Citrus Sinensis ID: 000556
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1426 | 2.2.26 [Sep-21-2011] | |||||||
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.986 | 0.981 | 0.693 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | yes | no | 0.982 | 0.984 | 0.674 | 0.0 | |
| Q949G3 | 1436 | Pleiotropic drug resistan | N/A | no | 0.976 | 0.969 | 0.684 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.988 | 0.967 | 0.680 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.988 | 0.967 | 0.679 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.986 | 0.974 | 0.667 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | no | no | 0.985 | 0.969 | 0.656 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.985 | 0.959 | 0.668 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.973 | 0.945 | 0.666 | 0.0 | |
| O24367 | 1441 | Pleiotropic drug resistan | N/A | no | 0.984 | 0.974 | 0.660 | 0.0 |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2118 bits (5488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1007/1453 (69%), Positives = 1193/1453 (82%), Gaps = 46/1453 (3%)
Query: 1 MEGSHDSYLASTSLRGNI---------SRWRTSSVGAFSKSLREEDDEEALKWAALEKLP 51
ME ++ S L +SLRG+ S WR + V FS+S R+EDDEEALKWAALEKLP
Sbjct: 1 MEPANLSNLRGSSLRGSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLP 60
Query: 52 TYNRLRKGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVG 111
T++RLRKGLL S+G A EVD+++LG Q+R+ L+ +LVKV + DNEKFLLKLK+RIDRVG
Sbjct: 61 TFDRLRKGLLFGSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVG 120
Query: 112 IDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDV 171
IDLP +EVRYEHLN++ +AY+ S++LP+F F T E + N L IL SRK+ LTILKD+
Sbjct: 121 IDLPTIEVRYEHLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDI 180
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYI 231
SGIIKP RMTLLLGPP+SGKTTLLLALAGKLD +LKV+G+V+YNGH++ EFVP+RTAAYI
Sbjct: 181 SGIIKPCRMTLLLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYI 240
Query: 232 SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATE 291
SQHD HIGEMTVRETL FSARCQGVGSR+E+L EL+RRE A IKPD DID+YMKA ATE
Sbjct: 241 SQHDLHIGEMTVRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATE 300
Query: 292 GQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIS 351
GQEANV+TDY LK+LGL++CADTMVGD+MIRGISGG++KRVTTGEM+VGP+ ALFMDEIS
Sbjct: 301 GQEANVVTDYVLKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEIS 360
Query: 352 TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREL 411
TGLDSSTT+ IVN L+Q V I GTAVISLLQPAPETY+LFDDIILLSDG IVYQGPR+
Sbjct: 361 TGLDSSTTYSIVNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDD 420
Query: 412 VLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVG 471
VLEFFESMGFKCP+RKGVADFLQEVTS+KDQ+QYW+ + +PYRF+T +EFAEA+QSFHVG
Sbjct: 421 VLEFFESMGFKCPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVG 480
Query: 472 QKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQIS 531
+K+ DEL TPFDK+K H AALT E YG GK+ELLK C RELLLMKRNSFVY+FK +Q++
Sbjct: 481 RKLGDELATPFDKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLT 540
Query: 532 SVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRD 591
+AL MTLF RT+M + + DGGIYAGALFF M+MFNG++E++MTI KLPVFYKQRD
Sbjct: 541 IMALITMTLFFRTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRD 600
Query: 592 FRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMAS 651
FFP WAYAIPSWILKIP++ +EV +WV LTYYVIG DPN RF KQ+LL + VNQMAS
Sbjct: 601 LLFFPSWAYAIPSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMAS 660
Query: 652 ALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAI 693
+FR I A GR+M VA+TF +D+K WW W YW SPM Y+ N+I
Sbjct: 661 GMFRFIGAVGRTMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSI 720
Query: 694 VANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAI 753
+ NEF G W P E++G V+KSRGFF AYWYW+G+GAL GF ++FN +++A+
Sbjct: 721 LVNEFDGKKWNHIVPGGNETLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLAL 780
Query: 754 TFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGS 813
+LN +KP+AV+ E+ E+ E+GE S S+ ++E+Q +
Sbjct: 781 AYLNPFDKPQAVLPEDGEN----------------AENGEVSSQITSTDGGDSISESQNN 824
Query: 814 HPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALM 873
K+GM+LPFEPHS+TFD+VVYSVDMPQEMK QG ED+LVLL G+SGAFRPGVLTALM
Sbjct: 825 ---KKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALM 881
Query: 874 GVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933
GVSGAGKTTLMDVL+GRKTGGYI G I ISGYPKKQETFARISGYCEQNDIHSP+VTVYE
Sbjct: 882 GVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYE 941
Query: 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAV 993
SL+YSAWLRLP +VD +TRKMF++EVMELVEL PL +LVGLPGV+GLSTEQRKRLTIAV
Sbjct: 942 SLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAV 1001
Query: 994 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053
ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFL
Sbjct: 1002 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFL 1061
Query: 1054 MKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFN 1113
MKRGGQEIYVGPLGRHSC LI YFE+ PGV KIK+GYNPATWMLEVTAS+QE+ LG+DF
Sbjct: 1062 MKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFT 1121
Query: 1114 DIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQY 1173
++++ S+LYRRNKALI EL P PGSKDL+F TQYSQS +TQ +ACLWKQHWSYWRNP Y
Sbjct: 1122 EVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAY 1181
Query: 1174 TAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSV 1233
TAVRF FT FIA++ G++FWD+G+K KSQDL NAMGSM+ A++FLG+Q SSVQPVV++
Sbjct: 1182 TAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAI 1241
Query: 1234 ERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFF 1293
ERTVFYRE+AAGMYS +P+A Q IEIPYIFVQSV Y +IVYAM+G++W KF WY F
Sbjct: 1242 ERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLF 1301
Query: 1294 FMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWA 1353
M+ TLL FTFYGM+ VA+TPN ++A+IV+ FYG+W LF GF+IPRPR+PVWWRWYYWA
Sbjct: 1302 IMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWA 1361
Query: 1354 NPVAWTLYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFV 1413
NPVAWTLYGL+ASQFGD++ ++ + ETV+ FLR YFGFKHDFLG+VA VLT +V +F F
Sbjct: 1362 NPVAWTLYGLVASQFGDIQTKLSDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFT 1421
Query: 1414 FALGIKQLNFQRR 1426
FA IK NFQRR
Sbjct: 1422 FAFAIKAFNFQRR 1434
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May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2054 bits (5322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 977/1448 (67%), Positives = 1169/1448 (80%), Gaps = 47/1448 (3%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSS-VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEG+ + AS S+R N S W+ S FS+S REEDDEEAL+WAALEKLPT++RLRKG
Sbjct: 1 MEGT-SFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKG 59
Query: 60 LLTTSR--GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
+LT S G E+D+ LG Q ++L+ +L+KV + ++EK L KLK RIDRVGIDLP +
Sbjct: 60 ILTASHAGGPINEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR++HL VE E ++ +ALP+F F + + N L ++P+RKK TIL DVSGI+KP
Sbjct: 120 EVRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
GRM LLLGPP+SGKTTLLLALAGKLD LK +GRVTYNGH M EFVP+RTAAYI Q+D H
Sbjct: 180 GRMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRET A++AR QGVGSRY++LTELARRE EA IKPDPDID++MKA++T G++ NV
Sbjct: 240 IGEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCADTMVGD+M+RGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSS
Sbjct: 300 MTDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN L+ +VHI +GTA+ISLLQPAPET++LFDDIIL+++G+I+Y+GPR+ V+EFFE
Sbjct: 360 TTYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+MGFKCP RKGVADFLQEVTS+KDQ QYW +++PYRF+ V EFAEAFQSFHVG++I DE
Sbjct: 420 TMGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L PFDK+KSH AALTT+ YG G +EL+KT SRE LLMKRNSFVY FK Q+ +A
Sbjct: 480 LALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLF RT+M K + DG +Y GALFF M+MFNG++E+SMTIAKLPVFYKQRD F+P
Sbjct: 540 MTLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPA 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
W Y++P W+LKIPISF+E A+ F+TYYVIG DPN GR FKQY+L + +NQMASALF+++
Sbjct: 600 WVYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMV 659
Query: 658 AATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFL 699
AA GR+M+VANTF +DIKKWW W YW SP+ Y QNAI+ANEF
Sbjct: 660 AALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFF 719
Query: 700 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 759
G+SW + NS E++GV LKSRGF HAYWYW+G GAL GF++LFN GFT+A+TFLN L
Sbjct: 720 GHSWSRAVENSSETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSL 779
Query: 760 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 819
KP+AVI EE S++ + + SAR E G +G N KKRG
Sbjct: 780 GKPQAVIAEEPASDETELQ-------SARSE-GVVEAGAN----------------KKRG 815
Query: 820 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879
M+LPFEPHS+TFD VVYSVDMPQEM QG ED+LVLL G++GAFRPGVLTALMGVSGAG
Sbjct: 816 MVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAG 875
Query: 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939
KTTLMDVL+GRKTGGYI GNITISGYPK Q+TFARISGYCEQ DIHSP VTVYESL+YSA
Sbjct: 876 KTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSA 935
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
WLRLP EVD RK+FIEEVMELVEL PL Q+LVGLPG SGLSTEQRKRLTIAVELVANP
Sbjct: 936 WLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANP 995
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFL+KRGG+
Sbjct: 996 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGE 1055
Query: 1060 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1119
EIYVGPLG S LI+YFE+I G+ KI +GYNPATWMLEV+ +SQE ALGVDF +++ S
Sbjct: 1056 EIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNS 1115
Query: 1120 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1179
ELY+RNK LI+ELS+P PGSKDLYFPTQYSQS TQ MA LWKQHWSYWRNP YTAVRF
Sbjct: 1116 ELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFL 1175
Query: 1180 FTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFY 1239
FT IA++ G++FWD+G KT+ QDL NAMGSM+TA++FLGLQ +SVQPVV+VERTVFY
Sbjct: 1176 FTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFY 1235
Query: 1240 REKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITL 1299
RE+AAGMYS +P+A AQ IEIPY+ VQ++VY +IVYAM+G++WTA KF WY FFMY +
Sbjct: 1236 REQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSF 1295
Query: 1300 LLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWT 1359
L FTFYGM+ VA+TPNHHIA++VS+ FYGIW LF GF+IPRP +PVWW WYYW PVAWT
Sbjct: 1296 LTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWT 1355
Query: 1360 LYGLIASQFGDVEDQMENGE-TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGI 1418
LYGLIASQFGD+ + M + +VK F+R+++G++ FLG+VA + F LF +FA+GI
Sbjct: 1356 LYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGI 1415
Query: 1419 KQLNFQRR 1426
K NFQ+R
Sbjct: 1416 KSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q949G3|PDR1_NICPL Pleiotropic drug resistance protein 1 OS=Nicotiana plumbaginifolia GN=PDR1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 2002 bits (5187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 984/1438 (68%), Positives = 1183/1438 (82%), Gaps = 46/1438 (3%)
Query: 13 SLRGNI-----SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGE 67
S+RG+I S WR + FS+S R+EDDEEALKWAALEKLPTY+RLRKG+L S+G
Sbjct: 21 SMRGSIRENSNSIWRNNGAEVFSRSARDEDDEEALKWAALEKLPTYDRLRKGILFGSQGA 80
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
A EVDV + G+ +R+ L+ +LVKV + DNEKFLLKLK+RIDRVGID P +EVR+EHLN++
Sbjct: 81 AAEVDVDDSGVLERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDFPSIEVRFEHLNID 140
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
+AY+ S+ALP+FT F + E + + + ILPS+K+ +TILKDVSGI+KP RMTLLLGPP
Sbjct: 141 ADAYVGSRALPTFTNFISNFVEGLLDSIHILPSKKRQVTILKDVSGIVKPCRMTLLLGPP 200
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
SGKTTLLLALAGKLDS+LKV+G+VTYNGH++ EFVP+RTAAYISQHD HIGEMTVRETL
Sbjct: 201 GSGKTTLLLALAGKLDSALKVTGKVTYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETL 260
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
FSARCQGVGSRYE+L EL+RRE A IKPD DID++MKA +TEGQEA V+TDY LK+LG
Sbjct: 261 EFSARCQGVGSRYEMLAELSRREKAANIKPDADIDMFMKAASTEGQEAKVVTDYILKILG 320
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++CADTMVGD+MIRGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSSTT+ IVN LK
Sbjct: 321 LDICADTMVGDQMIRGISGGQKKRVTTGEMIVGPSKALFMDEISTGLDSSTTYSIVNSLK 380
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q V I GTA+ISLLQPAPETY+LFDDIILLSDG IVY+GPRE VLEFFESMGFKCP+RK
Sbjct: 381 QSVRIMKGTALISLLQPAPETYNLFDDIILLSDGYIVYEGPREEVLEFFESMGFKCPERK 440
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
G ADFLQEVTS+KDQ+QYW +++PYRF+T +EFAEA+QSFHVG+K+SDEL+T FDKSKS
Sbjct: 441 GAADFLQEVTSKKDQQQYWIRRDEPYRFITSKEFAEAYQSFHVGRKVSDELKTTFDKSKS 500
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H AALTT+ YG GKR+LLK C RELLLM+RNSFVY+FK Q+ +AL MT+F RTKM
Sbjct: 501 HPAALTTQKYGIGKRQLLKVCTERELLLMQRNSFVYLFKFFQLLIIALMTMTIFFRTKMP 560
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ S DGGIY+GALFF M+MFNGL+E+ MT+ KLPVFYKQRDF F+P WAYAIPSWIL
Sbjct: 561 RDSAEDGGIYSGALFFVVIMIMFNGLSELPMTLYKLPVFYKQRDFLFYPSWAYAIPSWIL 620
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
KIP++F EV +WVFLTYYV+G DPN GRFFKQ+LL L VNQMASALFR IAA GR+M VA
Sbjct: 621 KIPVTFAEVGMWVFLTYYVMGFDPNVGRFFKQFLLLLLVNQMASALFRFIAAVGRTMGVA 680
Query: 668 NTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709
+TF D+K WW W YW SP+ Y+ NAI+ NEF G WK
Sbjct: 681 STFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIVAG 740
Query: 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769
E +G V+++RGFF AYWYW+G+GAL GFI++FN+ +++A+ +LN +KP+A I++E
Sbjct: 741 GTEPLGAAVVRARGFFPDAYWYWIGVGALAGFIVMFNIAYSVALAYLNPFDKPQATISDE 800
Query: 770 SESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSL 829
SE+N+ ++ + + + G+S S KK+GM+LPF+PHS+
Sbjct: 801 SENNESESSPQ--ITSTQEGDS--------------------ASENKKKGMVLPFDPHSI 838
Query: 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889
TFDEVVYSVDMP EM+ G +++LVLL +SGAFRPGVLTALMGVSGAGKTTLMDVL+G
Sbjct: 839 TFDEVVYSVDMPPEMRESGTSDNRLVLLKSVSGAFRPGVLTALMGVSGAGKTTLMDVLAG 898
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDS 949
RKTGGYI G+I ISGYPKKQ+TFARISGYCEQNDIHSP+VTV+ESL+YSAWLRLP +V+
Sbjct: 899 RKTGGYIDGSIKISGYPKKQDTFARISGYCEQNDIHSPYVTVFESLVYSAWLRLPQDVNE 958
Query: 950 ETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009
E R MF+EEVM+LVEL PL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTS
Sbjct: 959 EKRMMFVEEVMDLVELTPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1018
Query: 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1069
GLDARAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEIYVGPLGR
Sbjct: 1019 GLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRQ 1078
Query: 1070 SCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALI 1129
SC LI YFE+IPGV KI +GYNPATWMLEVTASSQE+ALGVDF D+++ S+LYRRNKALI
Sbjct: 1079 SCHLIKYFESIPGVSKIVEGYNPATWMLEVTASSQEMALGVDFTDLYKKSDLYRRNKALI 1138
Query: 1130 EELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLG 1189
+ELS P PG+ DL+F +++SQ +TQ MACLWKQHWSYWRNP YTAVR FT FIA++ G
Sbjct: 1139 DELSVPRPGTSDLHFDSEFSQPFWTQCMACLWKQHWSYWRNPAYTAVRLIFTTFIALIFG 1198
Query: 1190 SLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSG 1249
++FWD+G+K ++QDL NAMGSM+ A++FLG+Q SSVQPVVSVERTVFYREKAAGMYS
Sbjct: 1199 TMFWDIGTKVSRNQDLVNAMGSMYAAVLFLGVQNSSSVQPVVSVERTVFYREKAAGMYSA 1258
Query: 1250 LPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLT 1309
+P+A AQ +IEIPYIFVQ+ VY +IVY+M+G++WT KF W FFFM+ T L FTF+GM+T
Sbjct: 1259 IPYAFAQVLIEIPYIFVQATVYGLIVYSMIGFEWTVAKFFWDFFFMFFTFLYFTFFGMMT 1318
Query: 1310 VAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFG 1369
VA+TPN ++A+IV+ FY +W LF GF++PRPRIP+WWRWYYW P+AWTLYGL+ASQFG
Sbjct: 1319 VAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWGCPIAWTLYGLVASQFG 1378
Query: 1370 DVEDQM-ENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
D++D + + +TV+ FLR FGFKHDFLG+VA V+ F +F F FALGIK NFQRR
Sbjct: 1379 DLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAFTFALGIKAFNFQRR 1436
|
Excretes secondary metabolites such as terpenes. Involved in both constitutive and jasmonic acid-dependent induced defense. Confers some resistance to sclareol and B.cinerea. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2002 bits (5186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 983/1445 (68%), Positives = 1140/1445 (78%), Gaps = 36/1445 (2%)
Query: 13 SLRGNI-SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-------TTS 64
S+RG+ S WR FS+S REEDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 18 SMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGD 76
Query: 65 RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHL 124
G VDV LG ++R+ L+ +LV+V + DNEKFLLKLK R+DRVGID+P +EVR+EHL
Sbjct: 77 GGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHL 136
Query: 125 NVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLL 184
E E + + LP+ T E+ N LGILP+RK+ + +L DVSGIIKP RMTLLL
Sbjct: 137 EAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLL 196
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAG+L LK SG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 197 GPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVR 256
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A GQEANV TDY LK
Sbjct: 257 ETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILK 316
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLE+CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN
Sbjct: 317 ILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVN 376
Query: 365 CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
L+Q VHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFESMGFKCP
Sbjct: 377 SLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCP 436
Query: 425 KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDK 484
RKGVADFLQEVTS+KDQ+QYW +KPYRFVTV+EF AFQSFH G+ I++EL PFDK
Sbjct: 437 DRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDK 496
Query: 485 SKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRT 544
SKSH AAL T YGA +ELLK I RE+LLMKRNSFVY+F+ Q+ V+L MTLF RT
Sbjct: 497 SKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
KM + S+T GGIY GALFF M+MFNG +E+++T+ KLPVF+KQRD F+P W+Y IPS
Sbjct: 557 KMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPS 616
Query: 605 WILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSM 664
WILKIPI+F+EV +VFLTYYVIG D N G FFKQYLL LA+NQMA +LFR I R+M
Sbjct: 617 WILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNM 676
Query: 665 VVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF 706
+VAN F E +KKWW W YW SPM YAQNAI NE +G+SW K
Sbjct: 677 IVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI 736
Query: 707 --TPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 764
+ S E++GVQVLKSRG F A WYW+G GA+ GF +LFN FT+A+T+L R
Sbjct: 737 VNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQ 796
Query: 765 VITEESESNKQDN---RIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 821
++EE K+ N I G V LS+ S G + + S I+ + + +RGM+
Sbjct: 797 SVSEEELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIVDD--DTEVTQRGMV 852
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPF P SL+FD V YSVDMPQEMK QGV +D+L LL G+SG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP +VDS TRKMFIEEVMELVELK L +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
Y GPLG HS +LI YFE+IPGV KIKDGYNPATWMLEVT QE ALGVDF+DI++ SEL
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
Y+RNKALI++LS+P P S DLYFPTQYSQS+ TQ MACLWKQ+ SYWRNP Y AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 1182 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1241
IA+L G++FWD+G K KSQDLFNAMGSM+ A++F+G+ C+SVQPVV+VERTVFYRE
Sbjct: 1213 TVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRE 1272
Query: 1242 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1301
+AAGMYS P+A Q +IEIPY VQ+ VY +IVYAM+G++WTA KF WY FFM TLL
Sbjct: 1273 RAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLY 1332
Query: 1302 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1361
FTFYGM+ V +TPN+HIA+IVS+ FY IW LF GFVIPRPR+P+WWRWY WA PVAWTLY
Sbjct: 1333 FTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLY 1392
Query: 1362 GLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQL 1421
GL+ SQFGD+E ME+G VK F+ +YFGFKH +LG VA V+ F LF +F I +
Sbjct: 1393 GLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKF 1452
Query: 1422 NFQRR 1426
NFQ+R
Sbjct: 1453 NFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 2000 bits (5181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 982/1445 (67%), Positives = 1139/1445 (78%), Gaps = 36/1445 (2%)
Query: 13 SLRGNI-SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLL-------TTS 64
S+RG+ S WR FS+S REEDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 18 SMRGDSGSMWRRGD-DVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGD 76
Query: 65 RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHL 124
G VDV LG ++R+ L+ +LV+V + DNEKFLLKLK R+DRVGID+P +EVR+EHL
Sbjct: 77 GGGKGVVDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHL 136
Query: 125 NVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLL 184
E E + + LP+ T E+ N LGILP+RK+ + +L DVSGIIKP RMTLLL
Sbjct: 137 EAEAEVRVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLL 196
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
GPP SGKTTLLLALAG+L LK SG+VTYNGH M EFVPERTAAYISQHD HIGEMTVR
Sbjct: 197 GPPGSGKTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVR 256
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
ETLAFSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A GQEANV TDY LK
Sbjct: 257 ETLAFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILK 316
Query: 305 VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN 364
+LGLE+CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIVN
Sbjct: 317 ILGLEICADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVN 376
Query: 365 CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCP 424
L+Q VHI GTAVISLLQPAPETY+LFDDIILLSDGQIVYQGPRE VLEFFES GFKCP
Sbjct: 377 SLRQTVHILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCP 436
Query: 425 KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDK 484
RKGVADFLQEVTS+KDQ+QYW +KPYRFVTV+EF AFQSFH G+ I++EL PFDK
Sbjct: 437 DRKGVADFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDK 496
Query: 485 SKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRT 544
SKSH AAL T YGA +ELLK I RE+LLMKRNSFVY+F+ Q+ V+L MTLF RT
Sbjct: 497 SKSHPAALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRT 556
Query: 545 KMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPS 604
KM + S+T GGIY GALFF M+MFNG +E+++T+ KLPVF+KQRD F+P W+Y IPS
Sbjct: 557 KMKRDSVTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPS 616
Query: 605 WILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSM 664
WILKIPI+F+EV +VFLTYYVIG D N G FFKQYLL LA+NQMA +LFR I R+M
Sbjct: 617 WILKIPITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNM 676
Query: 665 VVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF 706
+VAN F E +KKWW W YW SPM YAQNAI NE +G+SW K
Sbjct: 677 IVANVFASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKI 736
Query: 707 --TPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 764
+ S E++GVQVLKSRG F A WYW+G GA+ GF +LFN FT+A+T+L R
Sbjct: 737 VNSSASNETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQ 796
Query: 765 VITEESESNKQDN---RIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 821
++EE K+ N I G V LS+ S G + + S I+ + + +RGM+
Sbjct: 797 SVSEEELKEKRANLNGEIVGDVHLSS--GSTRRPMGNGTENDSTIVDD--DTEVTQRGMV 852
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPF P SL+FD V YSVDMPQEMK QGV +D+L LL G+SG+FRPGVLTALMGVSGAGKT
Sbjct: 853 LPFTPLSLSFDNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKT 912
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISGYPKKQETFAR+SGYCEQNDIHSP VTVYESLL+SAWL
Sbjct: 913 TLMDVLAGRKTGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWL 972
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP +VDS TRKMFIEEVMELVELK L +LVGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 973 RLPEDVDSNTRKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSI 1032
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EI
Sbjct: 1033 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1092
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
Y GPLG HS +LI YFE+IPGV KIKDGYNPATWMLEVT QE ALGVDF+DI++ SEL
Sbjct: 1093 YAGPLGHHSSELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSEL 1152
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
Y+RNKALI++LS+P P S DLYFPTQYSQS+ TQ MACLWKQ+ SYWRNP Y AVRFFFT
Sbjct: 1153 YQRNKALIKDLSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFT 1212
Query: 1182 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1241
IA+L G++FWD+G K KSQDLFNAMGSM+ A++F+G+ C+SVQPVV+VERTVFYRE
Sbjct: 1213 TVIALLFGTIFWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRE 1272
Query: 1242 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1301
+AAGMYS P+A Q +IEIPY VQ+ VY +IVYAM+G++WTA KF WY FFM TLL
Sbjct: 1273 RAAGMYSAFPYAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLY 1332
Query: 1302 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1361
FTFYGM+ V +TPN+HIA+IVS+ FY IW LF GFVIPRPR+P+WWRWY WA PVAWTLY
Sbjct: 1333 FTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLY 1392
Query: 1362 GLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQL 1421
GL+ SQFGD+E ME+G VK F+ +YFGFKH +LG VA V+ F LF +F I +
Sbjct: 1393 GLVVSQFGDIETPMEDGTPVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKF 1452
Query: 1422 NFQRR 1426
NFQ+R
Sbjct: 1453 NFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1978 bits (5124), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 959/1437 (66%), Positives = 1164/1437 (81%), Gaps = 30/1437 (2%)
Query: 13 SLRGNISRWRTSS--VGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE 70
S+R S WR +S AF +S+REEDDEEALKWAA+EKLPTY+R+RKG+LT G E
Sbjct: 15 SVRRTASSWRGTSGRSDAFGRSVREEDDEEALKWAAIEKLPTYDRMRKGILTA--GGVEE 72
Query: 71 VDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEA 130
VD+ LGLQ+R+ LI +LV+ E DNE+FLLKL+ R++RVGID P +EVR+E+L+++ EA
Sbjct: 73 VDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEA 132
Query: 131 YLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASG 190
Y+ ++ +P+FT F++ D+ + + I+ S K+ ++IL D+SGII+PGRM+LLLGPP SG
Sbjct: 133 YVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSG 192
Query: 191 KTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFS 250
KT+LLLALAGKLDS+LKVSGRVTYNGHDM EFVP+RT+AYI QHD HIGEMTVRETLAFS
Sbjct: 193 KTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFS 252
Query: 251 ARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310
ARCQGVG+RY++LTEL+RRE EA IKPDPDIDVYMKAI+ EGQE+ V+TDY LK+LGLE+
Sbjct: 253 ARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKAISVEGQES-VVTDYILKILGLEI 311
Query: 311 CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHV 370
CADTMVGD MIRGISGG++KRVTTGEM+VGPA ALFMDEISTGLDSSTT+QIVN L+Q V
Sbjct: 312 CADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSV 371
Query: 371 HINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVA 430
HI GTA+I+LLQPAPETYDLFDDI+LLS+GQIVYQGPRE +LEFFE+MGFKCP+RKGVA
Sbjct: 372 HILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVA 431
Query: 431 DFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRA 490
DFLQEVTSRKDQ QYW +++PYR+++V +F+EAF+ FHVG+ + ELR PFD++++H A
Sbjct: 432 DFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPA 491
Query: 491 ALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHS 550
ALTT YG K EL K C SRE LLMKRNSFVYIFK+ Q+ + MT+FLRTKMH+ S
Sbjct: 492 ALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRS 551
Query: 551 LTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIP 610
+ DG I+ GA+F +FNG AE++M+IAKLP+FYKQRD F+P WAYA+P+W+LKIP
Sbjct: 552 VEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIP 611
Query: 611 ISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF 670
ISFLE AVW+ +TYYV+G DPN RFF+ Y+L + ++QMAS LFRL+AA GR MVVA+TF
Sbjct: 612 ISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTF 671
Query: 671 ------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP--NS 710
E+IKKWW W YW SP+ YAQNAI NEFLG+SW K S
Sbjct: 672 GSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQS 731
Query: 711 YESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEES 770
+++GVQVLK RG F A WYW+G+GAL G+I+LFN+ F + + +L+ L K +AV++EE
Sbjct: 732 NDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEE 791
Query: 771 ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLT 830
K NR V+L G ++ ++ + E G+ +KRGM+LPF P S+T
Sbjct: 792 LREKHVNRTGENVELLTLGTDSQNSPSDANAGRG----EITGADTRKRGMVLPFTPLSIT 847
Query: 831 FDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890
FD + YSVDMPQEMK +GV ED+L+LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+GR
Sbjct: 848 FDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGR 907
Query: 891 KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE 950
KTGGYI G+I+ISGYPKKQETFARI+GYCEQNDIHSP VTVYESLLYSAWLRLP EVDSE
Sbjct: 908 KTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSE 967
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
RKMF+EEVMELVEL L +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 968 ARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1027
Query: 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHS 1070
LDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLG +S
Sbjct: 1028 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNS 1087
Query: 1071 CQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIE 1130
C LI+YFE I GV KIKDGYNPATWMLEVT +QE LG++F +++R S+LY+RNK LI
Sbjct: 1088 CHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLIS 1147
Query: 1131 ELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGS 1190
ELS P PGS DL+FPTQ+SQ FTQ MACLWKQH SYWRNP YTA R FFT IA++ G+
Sbjct: 1148 ELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGT 1207
Query: 1191 LFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGL 1250
+F ++G K K DLFN++GSM+ A++F+G+Q +VQP+V VERTVFYREKAAGMYS L
Sbjct: 1208 IFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSAL 1267
Query: 1251 PWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTV 1310
P+A AQ +IEIP+IF+Q+VVY +IVY+++G+DWT EKF WY FFM+ T + FTFYGM+ V
Sbjct: 1268 PYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAV 1327
Query: 1311 AITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGD 1370
A+TPN IAAIVST FY IW +F GF+IPRPRIP+WWRWY WA PVAWTLYGL+ASQ+GD
Sbjct: 1328 AMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGD 1387
Query: 1371 VEDQ-MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
+ + +E+GE V+ ++R YFGF+HD+LG VA + F ALF FVFA IK NFQRR
Sbjct: 1388 ITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1966 bits (5092), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 951/1449 (65%), Positives = 1142/1449 (78%), Gaps = 43/1449 (2%)
Query: 13 SLRGNISRWRTSSVGAFSKSLR----EEDDEEALKWAALEKLPTYNRLRKGLLTTSR--- 65
SLR S WR+ FS+S E+DDEEAL+WAALE+LPTY+R+R+G+L S
Sbjct: 10 SLRREGSMWRSGG-DVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 66 ---GEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYE 122
GE EVDV LG ++ + LI +LV+ + D+E+FLLKL+ R+DRVGID P +EVR+E
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 123 HLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTL 182
+L VE + ++ ++ LP+ T E I N L ILP++K+ +T+L DVSGIIKP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242
LLGPP SGKTTLLLALAGKLD LKVSG+VTYNGH M EFVPERTAAYISQHD HIGEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYY 302
VRETLAFSARCQGVG+RYE+LTELARRE A IKPD DID+YMKA A GQE++V+TDY
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQI 362
LK+LGL++CADT+VG+EM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 363 VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFK 422
VN L+Q +HI GTAVISLLQPAPETY+LFDDIILLSDGQ+VYQGPRE VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 423 CPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPF 482
CP RKGVADFLQEVTSRKDQ QYW +++PYRFV V++FA+AF+SFHVG+ I +EL PF
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 483 DKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFL 542
D+++SH AAL T YG ++ELLK I RELLLMKRN+F+YIFK ++ +AL MT F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 543 RTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAI 602
RT M +H G IY GAL+FA VMFNG AE++MT+ KLPVF+KQRD FFP WAY I
Sbjct: 549 RTSM-RHDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 603 PSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGR 662
PSWIL+IPI+FLEV V+VF+TYYVIG DP+ RFFKQYLL LA+NQM+SALFR IA GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 663 SMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWK 704
MVV++TF D+KKWW W YW SP+SYAQNAI NEFLG+SW
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 705 KFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRA 764
+ P ++GV VLKSRG F A WYW+GLGAL G+ LLFNL +T+A++ L+ A
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHA 787
Query: 765 VITEESESNKQDNR----IRGTVQLSARGESGE--DISGRNSSSKSLILTEAQGSHPKKR 818
++E++ K N + G +R + E I+ +NS S S ++
Sbjct: 788 SMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINS------ADSSASRK 841
Query: 819 GMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGA 878
GM+LPF P S++F++V YSVDMP+ MK QG+ ED+L+LL G+SG+FRPGVLTALMGVSGA
Sbjct: 842 GMVLPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGA 901
Query: 879 GKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYS 938
GKTTLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESL++S
Sbjct: 902 GKTTLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFS 961
Query: 939 AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 998
AWLRLP EVDSE RKMFIEEVM+LVEL L +LVGLPGVSGLSTEQRKRLTIAVELVAN
Sbjct: 962 AWLRLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVAN 1021
Query: 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
PSIIFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG
Sbjct: 1022 PSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGG 1081
Query: 1059 QEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRC 1118
+EIYVGP+G++S +LI YFE I GV +IKDGYNPATWMLEVT+S+QE LGVDF++I+R
Sbjct: 1082 EEIYVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQ 1141
Query: 1119 SELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRF 1178
SELY+RNK LIEELS P PGS DL FPTQYS+S TQ +ACLWKQ+WSYWRNP YTAVR
Sbjct: 1142 SELYQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRL 1201
Query: 1179 FFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVF 1238
FT IA++ G++FW++G++T+K QDLFNAMGSM+ A++++G+Q SVQPVV VERTVF
Sbjct: 1202 LFTIVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVF 1261
Query: 1239 YREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYIT 1298
YRE+AAGMYS P+A Q IE+PYI VQ+++Y V+VY+M+G++WT KF WY FFMY T
Sbjct: 1262 YRERAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFT 1321
Query: 1299 LLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAW 1358
LL FTFYGM+ V +TPN IAAI+S+ FY +W LF G++IPRP+IPVWWRWY W PVAW
Sbjct: 1322 LLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAW 1381
Query: 1359 TLYGLIASQFGDVEDQME-NGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALG 1417
TLYGL+ASQFGD++ +E + TV F+ DYFGF H+FL +VA V F F F+F+
Sbjct: 1382 TLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFA 1441
Query: 1418 IKQLNFQRR 1426
I + NFQRR
Sbjct: 1442 IMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1952 bits (5058), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 963/1441 (66%), Positives = 1129/1441 (78%), Gaps = 36/1441 (2%)
Query: 19 SRWRTSSVGAFSKSLRE------EDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE-- 70
S W ++ G FS+S EDDEEAL+WAALEKLPTY+R+R+ +L
Sbjct: 27 SMWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGE 86
Query: 71 -----VDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLN 125
VDV +LG Q+R+ L+ +LV+V E DNE+FLLKLK RIDRVGID+P +EVR+EHL
Sbjct: 87 AGKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLE 146
Query: 126 VEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLG 185
E E + + LP+ T E N LGILP++K+ + IL DVSGI+KP RMTLLLG
Sbjct: 147 AEAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLG 206
Query: 186 PPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245
PP SGKTTLLLALAG+L +K SG+VTYNGH M +FVP+RTAAYISQHD HIGEMTVRE
Sbjct: 207 PPGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRE 266
Query: 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKV 305
TL+FSARCQGVGSR+++LTEL+RRE A IKPD DID +MKA A EGQE N+ITDY LK+
Sbjct: 267 TLSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKI 326
Query: 306 LGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365
LGL++CADTMVGD+M+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTTFQIV
Sbjct: 327 LGLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKS 386
Query: 366 LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPK 425
L+Q +HI GTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRE VLEFFE MGFKCP+
Sbjct: 387 LRQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPE 446
Query: 426 RKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKS 485
RKGVADFLQEVTSRKDQKQYW +KPYR+V V++FA AFQSFH G+ I++EL TPFDKS
Sbjct: 447 RKGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKS 506
Query: 486 KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTK 545
K+H AALTT YG ELLK I RE LLMKRNSFVYIF+ Q+ V+ MT+F RTK
Sbjct: 507 KNHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTK 566
Query: 546 MHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605
MH+ S+TDG I+ GALFF+ M+MFNGL+E+ +TI KLPVF+KQRD FFP W Y IPSW
Sbjct: 567 MHRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSW 626
Query: 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMV 665
ILKIP+SF+EV +VF++YYVIG DP+AGRFFKQYLL LA+NQMA+ALFR + R+M+
Sbjct: 627 ILKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMI 686
Query: 666 VANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFT 707
VAN F E +KKWW W YW SPM YAQNAI NEFLG+SW K
Sbjct: 687 VANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVL 746
Query: 708 PNSY--ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAV 765
NS E++GVQ L+SRG F A WYW+G GAL GFI+LFN FT+A+T+L K +
Sbjct: 747 NNSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPS 806
Query: 766 ITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFE 825
++EE KQ N + + S N+ + S I A S P +RGM+LPF
Sbjct: 807 VSEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEI---ADNSQPTQRGMVLPFA 863
Query: 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
P SLTFD + YSVDMPQEMK G++ED+L LL G+SG+FRPGVLTALMGVSGAGKTTLMD
Sbjct: 864 PLSLTFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMD 923
Query: 886 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945
VL+GRKTGGYI GNITISGYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP
Sbjct: 924 VLAGRKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPK 983
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
+VDS TRKMFIEEVMELVELKPL +LVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMD
Sbjct: 984 DVDSNTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMD 1043
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGP
Sbjct: 1044 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGP 1103
Query: 1066 LGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRN 1125
LG S +LI YFE I GV +IKDGYNPATWMLEV+ SQE ALGVDF DI+R SEL++RN
Sbjct: 1104 LGHQSSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRN 1163
Query: 1126 KALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIA 1185
KALI+ELS P PGS +LYFPT+YS S Q +ACLWK H SYWRNP Y A+R FFT IA
Sbjct: 1164 KALIQELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIA 1223
Query: 1186 VLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAG 1245
+L G++FWD+G KT KSQDLFNAMGSM++A++F+G+ SVQPVVSVERTVFYRE+AAG
Sbjct: 1224 LLFGTIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAG 1283
Query: 1246 MYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFY 1305
MYS P+A Q IE PY VQS++Y +IVY+M+G+ WTA KF WY FFM+ T L FTFY
Sbjct: 1284 MYSAFPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFY 1343
Query: 1306 GMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIA 1365
GM+ V +TP++H+A+IVS+ FYGIW LF GF+IPRP++P+WWRWY W PVAWTLYGL+A
Sbjct: 1344 GMMAVGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVA 1403
Query: 1366 SQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQR 1425
SQFGD+ M++G VK F+ +YF FKH +LG+VA V+ F LF F+F I +LNFQ+
Sbjct: 1404 SQFGDIMTPMDDGTPVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQK 1463
Query: 1426 R 1426
R
Sbjct: 1464 R 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1946 bits (5041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 948/1423 (66%), Positives = 1108/1423 (77%), Gaps = 35/1423 (2%)
Query: 35 EEDDEEALKWAALEKLPTYNRLRKGLL-----------TTSRGEAFEVDVSNLGLQQRQR 83
EEDDEEAL+WAAL+KLPTY+R+R +L G VDV +LG +R+
Sbjct: 50 EEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHERRA 109
Query: 84 LINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKF 143
L+ +LV+V + DNE+FLLKLK RI RVGID+P +EVR+EHL VE E + + +P+
Sbjct: 110 LLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVLNS 169
Query: 144 YTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203
T E+ N LGILP+RK+ L IL D+SGIIKP RMTLLLGPP SGKTT LLALAG+L
Sbjct: 170 ITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGRL- 228
Query: 204 SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
LK SG+VTYNGH M +FVP+RTAAYISQHD HIGEMTVRETL+FSARCQGVGSR+++L
Sbjct: 229 KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFDML 288
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
TEL RRE A IKPD D+D +MKA A EGQE+N+ITDY LK+LGLE+CADTMVGD+M+RG
Sbjct: 289 TELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMVRG 348
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
ISGG+RKRVTTGEM+VGPA A FMDEISTGLDSSTTFQIV L+Q +HI GTAVISLLQ
Sbjct: 349 ISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISLLQ 408
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK 443
PAPETYDLFDDIILLSDG IVYQGPRE VLEFFE MGFKCP+RKGVADFLQEVTSRKDQK
Sbjct: 409 PAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKDQK 468
Query: 444 QYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRE 503
QYW +KPYR+V ++EFA AFQSFH G+ I++EL TPFDKSKSH AALTT YG E
Sbjct: 469 QYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSAME 528
Query: 504 LLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFF 563
LLK I RELLL+KRNSFVYIF+ Q+ +V+ MT+F RTKMH+ S+ DG I+ GALFF
Sbjct: 529 LLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGALFF 588
Query: 564 ATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLT 623
A M+M NGL+E+ +TI KLPVF+KQRD FFP W Y IPSWILK P+SF+EV + F++
Sbjct: 589 AVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCFMS 648
Query: 624 YYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------- 670
YYVIG DPN GRFFKQYLL LAV+QMA+ALFR + R+++VAN F
Sbjct: 649 YYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVLGG 708
Query: 671 -----EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSY--ESIGVQVLKSRG 723
+ + KWW W YW SPM YAQNA+ NEFLG+SW K NS E++GVQ L SRG
Sbjct: 709 FILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMSRG 768
Query: 724 FFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTV 783
F A WYW+G GAL GFI+LFN+ FT+A+T+L K + I+EE KQ N I G V
Sbjct: 769 IFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQAN-INGNV 827
Query: 784 QLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQE 843
S +++ S+ + A S P +RGM+LPF P SLTF+++ YSVDMPQE
Sbjct: 828 LDVDTMASSNNLAIVGSTGTGSEI--ADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQE 885
Query: 844 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903
MK G++ED+L LL G+SG FRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNI+IS
Sbjct: 886 MKAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISIS 945
Query: 904 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
GYPKKQETFAR+SGYCEQNDIHSP VTV ESLL+SAWLRLP +VDS TRKMFIEEVMELV
Sbjct: 946 GYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELV 1005
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
ELKPL +LVGLPGV+GLS EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV
Sbjct: 1006 ELKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1065
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGV 1083
RNTV+TGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLG HS +LI YFE I GV
Sbjct: 1066 RNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGV 1125
Query: 1084 EKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLY 1143
KI DGYNPATWMLEVT SQE AL VDF DI+R SEL++RNKALI+ELS P PGS +LY
Sbjct: 1126 SKITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELY 1185
Query: 1144 FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQ 1203
FPTQYSQS Q +ACLWKQH SYWRNP Y A+R FFT IA++ G++FWD+G K +SQ
Sbjct: 1186 FPTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQ 1245
Query: 1204 DLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPY 1263
DLFNAMGSM+ A++F+G+ SVQPVVSVERTVFYRE+AAGMYS LP+A Q IE PY
Sbjct: 1246 DLFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPY 1305
Query: 1264 IFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVS 1323
VQSV+Y +IVY+M+G+ WT KF WY FFM+ TLL FTFYGM+ V +TP++H+A+IVS
Sbjct: 1306 TLVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVS 1365
Query: 1324 TLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENGETVKH 1383
+ FY IW LF GFVI RP PVWWRWY W PVAWTLYGLI SQ+GD+ M++G V
Sbjct: 1366 SAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDIVTPMDDGIPVNV 1425
Query: 1384 FLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
F+ +YF FKH +LG VA V+ F LF F+F I +LNFQ+R
Sbjct: 1426 FVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|O24367|TUR2_SPIPO Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1932 bits (5005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 947/1434 (66%), Positives = 1141/1434 (79%), Gaps = 30/1434 (2%)
Query: 13 SLRGNISRWRTSSVG-AFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEV 71
SLR ++S WR+ S F +S REEDDEEALKWAALEKLPTY+RLRKG++T GE EV
Sbjct: 18 SLRRSVSAWRSPSTSDVFGRSSREEDDEEALKWAALEKLPTYDRLRKGIMTGDGGEIQEV 77
Query: 72 DVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAY 131
D+ LG Q+R+ L+ KLV+ E DNE+FLLKL++R++RVGID P +EVR+EHLN+ EA+
Sbjct: 78 DIQGLGFQERKNLLEKLVRNAEEDNERFLLKLRNRMERVGIDNPTIEVRFEHLNINAEAF 137
Query: 132 LASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGK 191
+ ++ +P+ F+ I + L ++PS K+ ++IL DVSGIIKP RMTLLLGPP +GK
Sbjct: 138 VGNRGVPTLVNFFVNKAIWILSALHLMPSGKRPISILHDVSGIIKPCRMTLLLGPPGAGK 197
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSA 251
TTLLLALAGKLD++LKV+G VTYNGH M EFVP+RT+AYISQHD HIGEMTVRETLAFS+
Sbjct: 198 TTLLLALAGKLDNTLKVTGNVTYNGHGMHEFVPQRTSAYISQHDVHIGEMTVRETLAFSS 257
Query: 252 RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311
RCQGVG+RYE+LTEL+RRE EA IKPDPD+DVYMKA+A EGQE+ V+TDY LK+LGL++C
Sbjct: 258 RCQGVGTRYEMLTELSRREKEANIKPDPDVDVYMKAVAVEGQES-VVTDYILKILGLDIC 316
Query: 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVH 371
ADTMVGD MIRGISGG++KRVTTGEM+VGP+ ALFMDEISTGLDSSTTFQIVN L+Q VH
Sbjct: 317 ADTMVGDGMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTFQIVNSLRQSVH 376
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVAD 431
I GTA+I+LLQPAPETYDLFDDI+LLSDGQIVYQGPRE VLEFFESMGFKCP+RKGVAD
Sbjct: 377 ILGGTALIALLQPAPETYDLFDDILLLSDGQIVYQGPRENVLEFFESMGFKCPERKGVAD 436
Query: 432 FLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAA 491
FLQEVTSRKDQ+QYW + +PYRFV V EF+EAF+SFHVG K+ +EL TPFD+S++H AA
Sbjct: 437 FLQEVTSRKDQQQYWVRENEPYRFVPVNEFSEAFKSFHVGAKLHEELSTPFDRSRNHPAA 496
Query: 492 LTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551
LTT YG K ELLK CI RE LLMKRNSFVYIFK+ Q+ +AL MT+F RTK+ ++ L
Sbjct: 497 LTTSKYGISKMELLKACIDREWLLMKRNSFVYIFKVVQLIVLALIAMTVFFRTKLPRNGL 556
Query: 552 TDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
D I+ GA+F +FNG AE++M+IAKLPVFYKQRD F+PPWAYA+P+WILKIPI
Sbjct: 557 EDATIFFGAMFLGLVTHLFNGFAELAMSIAKLPVFYKQRDLLFYPPWAYALPTWILKIPI 616
Query: 612 SFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF- 670
SF+E VW+ +TYYVIG DPN R F+ YLL + ++Q+AS LFRL+AA GR MVVA+TF
Sbjct: 617 SFVECGVWIAMTYYVIGFDPNVVRMFRHYLLLVLISQVASGLFRLLAAVGRDMVVADTFG 676
Query: 671 -----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYES 713
E IKK+W W YW SP+ YAQNAI NEFLG+SW K + ++
Sbjct: 677 AFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNEFLGHSWNKLVDATGQT 736
Query: 714 IGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESN 773
+G + L++RG F WYW+G+GAL G+++LFN F + + +L+ L K + ++EE+
Sbjct: 737 LGERFLRNRGIFVDKNWYWIGVGALIGYMVLFNFLFILFLEWLDPLGKGQTTVSEEALQE 796
Query: 774 KQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDE 833
K+ NR V+L+ RG + G E + +K+GM+LPF P S+TFD
Sbjct: 797 KEANRTGANVELATRGSAATSDGGS---------VEIRKDGNRKKGMVLPFTPLSITFDN 847
Query: 834 VVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 893
V YSVDMPQEMK +GV EDKL+LL G+SGAFRPGVLTALMGVSG GKTTLMDVL+GRKTG
Sbjct: 848 VKYSVDMPQEMKDRGVTEDKLLLLKGVSGAFRPGVLTALMGVSGRGKTTLMDVLAGRKTG 907
Query: 894 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK 953
GYI G+I ISGYPK QETFARISGYCEQNDIHSP VTVYESLLYSAWLRLP EVD + RK
Sbjct: 908 GYIEGDIRISGYPKNQETFARISGYCEQNDIHSPHVTVYESLLYSAWLRLPAEVDEKQRK 967
Query: 954 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
MF++EVM+LVEL L SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 968 MFVDEVMDLVELNSLRGSLVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1027
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQL 1073
RAAAIVMR VRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGG+EIYVGPLGR S L
Sbjct: 1028 RAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGRQSSHL 1087
Query: 1074 ISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELS 1133
I YFE+I GV+KIK+ YNPATWMLEVT SQE LG++F +++R S+LY+RNK LI+ELS
Sbjct: 1088 IKYFESIDGVKKIKERYNPATWMLEVTTISQEEILGLNFAEVYRNSDLYKRNKDLIKELS 1147
Query: 1134 KPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFW 1193
P PGSKDL+F TQ+SQS Q +ACLWKQH SYWRNP YTA R FFT IA++ G++FW
Sbjct: 1148 TPPPGSKDLFFATQFSQSFVMQCLACLWKQHKSYWRNPSYTATRLFFTVVIALIFGTIFW 1207
Query: 1194 DMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWA 1253
D+G K S DL NAMGSM+ A++F+G+Q +VQP+V VERTVFYREKAAGMYS LP+A
Sbjct: 1208 DLGKKRSTSLDLINAMGSMYAAVLFIGIQNAQTVQPIVDVERTVFYREKAAGMYSALPYA 1267
Query: 1254 LAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAIT 1313
AQ +IE+P+I VQ+++Y ++VY+M+G+DWTA KF WY FFM+ T L FT+YGM+ VA+T
Sbjct: 1268 YAQVLIEVPHILVQTLLYGLLVYSMIGFDWTAAKFLWYMFFMFFTFLYFTYYGMMAVAMT 1327
Query: 1314 PNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVED 1373
PN IAAIV+ FY IW +F GF+IPRPRIP+WWRWYYWA PVAWTLYGL+ SQFG+ D
Sbjct: 1328 PNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTD 1387
Query: 1374 QMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
M + ETVK FLR + GF+HDFL +V ++ F LF +FA IK LNFQRR
Sbjct: 1388 TMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441
|
May be a general defense protein (By similarity). Seems involved in turion (dormant buds) formation. Confers resistance to the diterpenoid antifungal agent sclareol. Spirodela polyrrhiza (taxid: 29656) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1426 | ||||||
| 255543331 | 1429 | ATP-binding cassette transporter, putati | 0.987 | 0.985 | 0.721 | 0.0 | |
| 297743362 | 3142 | unnamed protein product [Vitis vinifera] | 0.987 | 0.448 | 0.727 | 0.0 | |
| 356555825 | 1427 | PREDICTED: pleiotropic drug resistance p | 0.985 | 0.985 | 0.718 | 0.0 | |
| 147816688 | 1471 | hypothetical protein VITISV_022715 [Viti | 0.995 | 0.964 | 0.715 | 0.0 | |
| 356519409 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.984 | 0.984 | 0.712 | 0.0 | |
| 297743360 | 1451 | unnamed protein product [Vitis vinifera] | 0.993 | 0.976 | 0.720 | 0.0 | |
| 359482652 | 1426 | PREDICTED: pleiotropic drug resistance p | 0.981 | 0.981 | 0.718 | 0.0 | |
| 255546581 | 1449 | ATP-binding cassette transporter, putati | 0.997 | 0.982 | 0.692 | 0.0 | |
| 359482654 | 1397 | PREDICTED: pleiotropic drug resistance p | 0.960 | 0.980 | 0.715 | 0.0 | |
| 297743343 | 1642 | unnamed protein product [Vitis vinifera] | 0.981 | 0.852 | 0.706 | 0.0 |
| >gi|255543331|ref|XP_002512728.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223547739|gb|EEF49231.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2177 bits (5641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1044/1447 (72%), Positives = 1214/1447 (83%), Gaps = 39/1447 (2%)
Query: 1 MEGSHDSYLASTSLR-GNISRWRTSSVGAFSKSLR--EEDDEEALKWAALEKLPTYNRLR 57
MEG+ + Y+A SLR G S WR++++ FSKS R E+DDEEALKWAA+E+LPTY+RL+
Sbjct: 1 MEGT-ELYIAGGSLRRGESSIWRSNAMEGFSKSSRGDEDDDEEALKWAAIERLPTYDRLK 59
Query: 58 KGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
KGLLTTS+GEA E+DV NLG +++ L+++LVKV E DNE FLLKLK+RIDRVGI+LP +
Sbjct: 60 KGLLTTSKGEANEIDVKNLGFHEKRTLLDRLVKVAEEDNELFLLKLKNRIDRVGIELPMI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVR+EHLNVE EA++ S+ALP+F F + E N+L ILPS KK L+IL+DVSGIIKP
Sbjct: 120 EVRFEHLNVETEAHVGSRALPTFFNFSIDIVEGFLNFLHILPSGKKSLSILQDVSGIIKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RMTLLLGPP+SGKTTLLLALAGKLD LK SGRVTYNGH+M EFVP+RTAAYISQHD H
Sbjct: 180 KRMTLLLGPPSSGKTTLLLALAGKLDPKLKFSGRVTYNGHEMNEFVPQRTAAYISQHDTH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAF+ARCQGVG RYE+++EL RRE + IKPDPDIDV+MKA+ATEGQEANV
Sbjct: 240 IGEMTVRETLAFAARCQGVGHRYEMISELLRREKASNIKPDPDIDVFMKAMATEGQEANV 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGLEVCAD MVG+EM+RG+SGG+RKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYILKILGLEVCADIMVGNEMLRGVSGGQRKRVTTGEMLVGPAKALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TT+QIVN +KQ++HI +GTAVISLLQP PETY+LFDDIILLSDGQIVYQGPRE VLEFFE
Sbjct: 360 TTYQIVNSIKQYIHILNGTAVISLLQPPPETYNLFDDIILLSDGQIVYQGPRENVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
MGFKCP+RKGVADFLQEVTSRKDQ QYW K+KPY FVTV EFAEAFQSF VG+++ E
Sbjct: 420 YMGFKCPERKGVADFLQEVTSRKDQAQYWADKDKPYSFVTVREFAEAFQSFLVGRRLEAE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L TPFDKSKSH AALTT+ YG GK ELLK C SRE+LLMKRNSFVYIFKLTQ++ +A+
Sbjct: 480 LSTPFDKSKSHPAALTTKKYGVGKMELLKACFSREILLMKRNSFVYIFKLTQLTIMAMVA 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MTLFLRT+MH+ S+T+GGIY GALFF+ +MFNGL+EIS+TIAKLPVFYKQR F+PP
Sbjct: 540 MTLFLRTEMHRDSVTNGGIYVGALFFSVVFIMFNGLSEISLTIAKLPVFYKQRSLLFYPP 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WA+++P WI KIPI+ ++VA+WVFLTYYVIG DPN GRFFKQYLL V+QMAS LFR I
Sbjct: 600 WAFSLPPWITKIPITLVQVAIWVFLTYYVIGFDPNVGRFFKQYLLLALVSQMASGLFRFI 659
Query: 658 AATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFL 699
AA GR+M+VANTF ++IKKWW W YW SP+ Y QNAIV NEFL
Sbjct: 660 AAAGRNMIVANTFGSFALLALFALGGFILSRDNIKKWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 700 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 759
G SW K P++ E++G+QVL+SRGFF HAYWYW+G+GAL GF LL+N FT+A+TFL L
Sbjct: 720 GNSWNKVLPDTTETLGIQVLESRGFFTHAYWYWIGVGALVGFTLLYNFFFTLALTFLGPL 779
Query: 760 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 819
+KP+AVI+E+S SN G++GE I +S LI+ E +H K++G
Sbjct: 780 QKPQAVISEDSASNTS-------------GKTGEVIQ-LSSVRTELIVEE---NHQKQKG 822
Query: 820 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879
M+LPFEPHS+TF+++ YSVDMPQEMK QG ED+L LL G+SGAFRPGVLTALMGVSGAG
Sbjct: 823 MVLPFEPHSITFNDIRYSVDMPQEMKRQGATEDRLELLRGVSGAFRPGVLTALMGVSGAG 882
Query: 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939
KTTLMDVL+GRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VTVYESLLYS+
Sbjct: 883 KTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPHVTVYESLLYSS 942
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
WLRLPPEV+SETRKMFIEEVMELVEL PL Q+LVGLPGVSGLSTEQRKRLTIAVELVANP
Sbjct: 943 WLRLPPEVNSETRKMFIEEVMELVELTPLRQALVGLPGVSGLSTEQRKRLTIAVELVANP 1002
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQ
Sbjct: 1003 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1062
Query: 1060 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1119
EIYVGPLGRHSCQLI YFEAI GV IKDGYNPATWMLEV++S+QE+ LG+DF I++ S
Sbjct: 1063 EIYVGPLGRHSCQLIKYFEAIEGVPDIKDGYNPATWMLEVSSSAQEMVLGLDFAAIYKNS 1122
Query: 1120 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1179
ELYRRNKALIEELS P GS DLYFPTQYSQS FTQ MACLWKQHWSYWRNP YTAVRF
Sbjct: 1123 ELYRRNKALIEELSTPPLGSNDLYFPTQYSQSFFTQCMACLWKQHWSYWRNPPYTAVRFL 1182
Query: 1180 FTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFY 1239
FT IA++ G++FWD+GSKT K QDLFNAMGSM+ AI+FLG+Q SSVQPVV+VERTVFY
Sbjct: 1183 FTTVIALMFGTMFWDLGSKTTKRQDLFNAMGSMYAAIVFLGIQNASSVQPVVAVERTVFY 1242
Query: 1240 REKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITL 1299
RE+AAGMYS LP+A AQ +IE+PYIF+Q+ VY +IVYAM+G++W+A KF WY FFMY TL
Sbjct: 1243 RERAAGMYSPLPYAFAQVVIELPYIFLQAAVYGLIVYAMIGFEWSAAKFFWYLFFMYFTL 1302
Query: 1300 LLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWT 1359
L +T+YGM+ VA+TPN +A+IVS+ FY IW LF GF+IPRPRIPVWWRWY W PVA+T
Sbjct: 1303 LFYTYYGMMAVAVTPNQQVASIVSSAFYSIWNLFSGFIIPRPRIPVWWRWYAWTCPVAYT 1362
Query: 1360 LYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIK 1419
LYGL++SQFGD++ +E+GETV+ F+R YF FKH+ LG VA + F LF F FA IK
Sbjct: 1363 LYGLVSSQFGDIKHTLESGETVEDFVRSYFDFKHELLGAVAAAVFGFATLFAFTFAFSIK 1422
Query: 1420 QLNFQRR 1426
NFQRR
Sbjct: 1423 FFNFQRR 1429
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743362|emb|CBI36229.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2173 bits (5631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1045/1436 (72%), Positives = 1208/1436 (84%), Gaps = 28/1436 (1%)
Query: 19 SRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLGL 78
S WR S FS+S R+EDDEEALKWAALEKLPTYNR+RKGLL S GEA EVD+ NLG
Sbjct: 1707 SIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAGEASEVDIHNLGF 1766
Query: 79 QQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALP 138
Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL ++ EA++ S+ALP
Sbjct: 1767 QEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTIDAEAHVGSRALP 1826
Query: 139 SFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLAL 198
SF EDI N L ILPSRKK LTIL DVSGIIKP RMTLLLGPP+SGKTTLLLAL
Sbjct: 1827 SFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGPPSSGKTTLLLAL 1886
Query: 199 AGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258
+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRETLAFSARCQGVG
Sbjct: 1887 SGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRETLAFSARCQGVGD 1946
Query: 259 RYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318
RY++L EL+RRE A IKPDPDIDV+MKA+ATEGQ+ NVITDY LK+LGLEVCADT+VGD
Sbjct: 1947 RYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKILGLEVCADTLVGD 2006
Query: 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+MIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN L+Q +HI +GTA+
Sbjct: 2007 QMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSLRQTIHILNGTAL 2066
Query: 379 ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFESMGF+CP+RKGVADFLQEVTS
Sbjct: 2067 ISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPERKGVADFLQEVTS 2126
Query: 439 RKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYG 498
RKDQ+QYW K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+KSH AAL TE YG
Sbjct: 2127 RKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTKSHPAALKTEKYG 2186
Query: 499 AGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYA 558
K+ELL CISRE LLMKRNSFVYIFKLTQ+ +A MT+FLRT+MHK+S DG IY
Sbjct: 2187 VRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEMHKNSTDDGSIYT 2246
Query: 559 GALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAV 618
GALFF M+MFNG++E++MTIAKLPVFYKQR F+P WAYA+PSWILKIPI+F+EVAV
Sbjct: 2247 GALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWILKIPITFVEVAV 2306
Query: 619 WVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF-------- 670
WVF++YYVIG DPN GR FKQYLL + VNQMASALFR IAA GR+M+VANTF
Sbjct: 2307 WVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIVANTFGSFSLLLL 2366
Query: 671 ----------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFTPNSYESIGVQVL 719
E++KKWW W YW SP+ YAQNAIV NEFLG SW K + +S ES+GV VL
Sbjct: 2367 FALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSSTDSTESLGVAVL 2426
Query: 720 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRI 779
KSRGFF AYWYW+G GAL GFIL+FN +T+A+T+LN EKP+AVITEESE++K +I
Sbjct: 2427 KSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVITEESENSKTGGKI 2486
Query: 780 ------RGTVQLSARGESGEDISGRNSSSKSLILTE--AQGSHPKKRGMILPFEPHSLTF 831
RG++ +A E ++I SS+ S + E A+ K+GM+LPF+P S+TF
Sbjct: 2487 ELSSHRRGSIDQTASTERRDEIGRSISSTSSSVRAEAIAEARRNNKKGMVLPFQPLSITF 2546
Query: 832 DEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891
D++ YSVDMP+EMK QGVLED+L LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL+GRK
Sbjct: 2547 DDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 2606
Query: 892 TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSET 951
TGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VT++ESLLYSAWLRLP +VDS+T
Sbjct: 2607 TGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADVDSKT 2666
Query: 952 RKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
RKMFIEEVMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 2667 RKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 2726
Query: 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSC 1071
DARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVGPLGRHS
Sbjct: 2727 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLGRHSS 2786
Query: 1072 QLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEE 1131
LI YF+ I GV KIKDGYNPATWMLEVT+S+QE LGVDF +I++ S+LYRRNK LI+E
Sbjct: 2787 HLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKDLIKE 2846
Query: 1132 LSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSL 1191
LS+P PGSKDLYFPTQYSQS FTQ MACLWKQ SYWRNP YTAVRFFFT FIA++ G++
Sbjct: 2847 LSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALIFGTM 2906
Query: 1192 FWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLP 1251
FWD+G+K +K QDL NAMGSM+ A++FLG+Q SSVQPVV+VERTVFYRE+AAGMYS +P
Sbjct: 2907 FWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMYSAMP 2966
Query: 1252 WALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVA 1311
+A AQA++EIPY+F Q+VVY VIVYAM+G++WTA KF WY FFM+ TLL FTFYGM+ VA
Sbjct: 2967 YAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGMMAVA 3026
Query: 1312 ITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDV 1371
TPN HIAAIV+ FYG+W LF GF++PR RIPVWWRWYYWA PVAWTLYGL+ SQFGD+
Sbjct: 3027 ATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQFGDI 3086
Query: 1372 EDQMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
+D+ E+ G+TV+ +L DYFGF+HDFLG+VA V+ F LF F+FA IK NFQRR
Sbjct: 3087 QDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 3142
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555825|ref|XP_003546230.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2170 bits (5624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1039/1447 (71%), Positives = 1200/1447 (82%), Gaps = 41/1447 (2%)
Query: 1 MEGSHDSYLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKG 59
MEGS D Y AS SLR S WR S V AFS+S REEDDEEALKWAALEKLPTYNRLRKG
Sbjct: 1 MEGS-DIYRASNSLRSRSSTVWRNSGVEAFSRSSREEDDEEALKWAALEKLPTYNRLRKG 59
Query: 60 LLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEV 119
LLT S G A E+DVS+LG+Q+RQ+L+ +LVKV E DNE+FLLKLK RIDRVG+D+P +EV
Sbjct: 60 LLTASHGVANEIDVSDLGIQERQKLLERLVKVAEEDNERFLLKLKERIDRVGLDIPTIEV 119
Query: 120 RYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGR 179
RYEHLN+E EA++ S+ALPSF T V E FN L + S+KKH+TILKDVSGIIKP R
Sbjct: 120 RYEHLNIEAEAFVGSRALPSFINSVTNVVEGFFNLLHVSTSKKKHVTILKDVSGIIKPRR 179
Query: 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239
MTLLLGPP+SGKTTLLLAL+GKLD +LKVSGRVTYNGH++ EFVP+RTAAYISQHD HIG
Sbjct: 180 MTLLLGPPSSGKTTLLLALSGKLDKTLKVSGRVTYNGHELNEFVPQRTAAYISQHDLHIG 239
Query: 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVIT 299
EMTVRETLAFSARCQGVGSRY++L+EL+RRE A IKPDPD+DVYMKA ATEGQE+N++T
Sbjct: 240 EMTVRETLAFSARCQGVGSRYDMLSELSRREKAANIKPDPDLDVYMKATATEGQESNIVT 299
Query: 300 DYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTT 359
DY LK+LGL++CADTMVGDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSSTT
Sbjct: 300 DYTLKILGLDICADTMVGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTT 359
Query: 360 FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
FQIV+ L+ +VHI +GTAVISLLQPAPETYDLFDDIIL+SDGQ+VY GPRE VL+FFESM
Sbjct: 360 FQIVSSLRHYVHILNGTAVISLLQPAPETYDLFDDIILISDGQVVYHGPREYVLDFFESM 419
Query: 420 GFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479
GF+CP+RKGVADFLQEVTS+KDQ QYW +++PYRFVTV +FAEAFQSFH+G K+ +EL
Sbjct: 420 GFRCPERKGVADFLQEVTSKKDQAQYWVRRDQPYRFVTVTQFAEAFQSFHIGGKLGEELT 479
Query: 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMT 539
PFD++KSH AALTT+ YG K+ELLK SRE LLMKRNSFVY+FKL+Q+ +AL MT
Sbjct: 480 VPFDRTKSHPAALTTKKYGINKKELLKANFSREYLLMKRNSFVYLFKLSQLFIMALVAMT 539
Query: 540 LFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWA 599
LFLRT+MH ++ D G+YAGA+FF VMFNGLAEISMTIAKLPVFYKQR+ F+P WA
Sbjct: 540 LFLRTEMHHENMDDAGVYAGAVFFMLITVMFNGLAEISMTIAKLPVFYKQRNLLFYPSWA 599
Query: 600 YAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAA 659
YAIPSWILKIP++ +EVAVWVFLTYYVIG DPN GRFFKQYL+ L V+QMAS LFR IAA
Sbjct: 600 YAIPSWILKIPVTIVEVAVWVFLTYYVIGFDPNVGRFFKQYLVLLIVSQMASGLFRTIAA 659
Query: 660 TGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 701
GR+M+VANTF DIK WW W YW SP+ Y QNA++ NEFL
Sbjct: 660 LGRNMIVANTFGAFAIITVVALGGFILSKRDIKSWWIWGYWISPLMYGQNALMVNEFLSN 719
Query: 702 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEK 761
SW T N +GV+ L+SR FF +YWYWLGLGAL GF+ LFN+ F +A+ FL +K
Sbjct: 720 SWHNATHN----LGVEYLESRAFFTDSYWYWLGLGALVGFVFLFNVMFGLALEFLGPFDK 775
Query: 762 PRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMI 821
P+A ITE+ SN+ GT+ + ++ G SS + L E+ SH KK+GM+
Sbjct: 776 PQATITEDESSNE------GTL-------ADIELPGIESSGRGDSLVES--SHGKKKGMV 820
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPFEPHS+TFDEVVYSVDMPQEMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAGKT
Sbjct: 821 LPFEPHSITFDEVVYSVDMPQEMKEQGVQEDRLVLLKGVSGAFRPGVLTALMGVSGAGKT 880
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISGYPKKQETFARISGYCEQNDIHSP VTVYESLLYSAWL
Sbjct: 881 TLMDVLAGRKTGGYIDGSIKISGYPKKQETFARISGYCEQNDIHSPHVTVYESLLYSAWL 940
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP VDS+TRKMFIEEVMELVEL P+ SLVGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 941 RLPSSVDSKTRKMFIEEVMELVELNPVRNSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1000
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQEI
Sbjct: 1001 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEI 1060
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
YVGPLGRHS LI YFE+I GV KIKDGYNPATWMLEVTA++QE++LGVDF D+++ S+L
Sbjct: 1061 YVGPLGRHSSHLIKYFESIEGVSKIKDGYNPATWMLEVTATAQELSLGVDFTDLYKNSDL 1120
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
YRRNK LI+EL +P PGSKDL+FPTQYSQS Q ACLWKQ WSYWRNP YTAVRFFFT
Sbjct: 1121 YRRNKQLIQELGQPAPGSKDLHFPTQYSQSFLVQCQACLWKQRWSYWRNPPYTAVRFFFT 1180
Query: 1182 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1241
FIA++ G++FWD+G K DL NA+GSM+TA++FLG+Q SSVQPVV++ERTVFYRE
Sbjct: 1181 TFIALMFGTIFWDLGGKHSTRGDLLNAIGSMYTAVLFLGVQNASSVQPVVAIERTVFYRE 1240
Query: 1242 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1301
KAAGMYS LP+A AQ ++E+PY+FVQ+V Y VIVYAM+G++WTAEKF WY FFMY TLL
Sbjct: 1241 KAAGMYSALPYAFAQILVELPYVFVQAVTYGVIVYAMIGFEWTAEKFFWYLFFMYFTLLY 1300
Query: 1302 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1361
+TFYGM+TV +TPNHHIA+IV+ FY +W LF GFV+ RP IPVWWRWYYWA PVAWT+Y
Sbjct: 1301 YTFYGMMTVGLTPNHHIASIVAAAFYAVWNLFSGFVVTRPSIPVWWRWYYWACPVAWTIY 1360
Query: 1362 GLIASQFGDVEDQM--ENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIK 1419
GL+ASQFGD+ + M E + VK FL DY+G KHDF+G+ A V+ LF +FA+ IK
Sbjct: 1361 GLVASQFGDLTEPMTSEGQKIVKDFLEDYYGIKHDFIGVSAVVVAGIAVLFALIFAVSIK 1420
Query: 1420 QLNFQRR 1426
NFQ+R
Sbjct: 1421 TFNFQKR 1427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147816688|emb|CAN77690.1| hypothetical protein VITISV_022715 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2164 bits (5606), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1048/1465 (71%), Positives = 1210/1465 (82%), Gaps = 46/1465 (3%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S FS+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK TIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKXTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK-----------------AIA 289
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MK A+A
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKEQNLLSLEFLKVLIGLMAVA 306
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
TEGQ+ NVITDY LK+LGLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDE
Sbjct: 307 TEGQKENVITDYTLKILGLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDE 366
Query: 350 ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPR 409
ISTGLDSSTT+QIVN L+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPR
Sbjct: 367 ISTGLDSSTTYQIVNSLRQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPR 426
Query: 410 ELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH 469
E VL+FFESMGF+CP+RKGVADFLQEVTSRKDQ+QYW K++PY FVTV+EFAEAFQSFH
Sbjct: 427 EDVLDFFESMGFRCPERKGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFH 486
Query: 470 VGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQ 529
+G+K+ EL TPFDK+KSH AAL TE YG K+ELL CISRE LLMKRNSFVYIFKLTQ
Sbjct: 487 IGRKLGHELATPFDKTKSHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQ 546
Query: 530 ISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQ 589
+ +A MT+FLRT+MHK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQ
Sbjct: 547 LIIMAAISMTIFLRTEMHKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQ 606
Query: 590 RDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQM 649
R F+P WAYA+PSWILKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQM
Sbjct: 607 RGLLFYPAWAYALPSWILKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQM 666
Query: 650 ASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQN 691
ASALFR IAA GR+M+VANTF E++KKWW W YW SP+ YAQN
Sbjct: 667 ASALFRFIAAAGRNMIVANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQN 726
Query: 692 AIVANEFLGYSW-KKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFT 750
AIV NEFLG SW K + +S ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T
Sbjct: 727 AIVVNEFLGKSWSKNSSTDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYT 786
Query: 751 MAITFLNQLEKPRAVITEESESNKQDNRI------RGTVQLSARGESGEDISGRNSSSKS 804
+A+T+LN EKP+AVITEESE++K +I RG++ +A E E+I SS+ S
Sbjct: 787 VALTYLNAFEKPQAVITEESENSKTGGKIELSSHRRGSIDQTASTERREEIGRSISSTSS 846
Query: 805 LILTEA--QGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSG 862
+ EA + K+GM+LPF+P S+TF+++ YSVDMP+EMK QGVLED+L LL G+SG
Sbjct: 847 SVRAEAIAEARRNNKKGMVLPFQPLSITFEDIRYSVDMPEEMKSQGVLEDRLELLKGVSG 906
Query: 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 922
AFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNI ISGYPKKQETFARI GYCEQN
Sbjct: 907 AFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNINISGYPKKQETFARIXGYCEQN 966
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
DIHSP VT++ESLLYSAWLRLP +VDS+TRKMFIEEVMELVEL PL SLVGLPGV+GLS
Sbjct: 967 DIHSPHVTIHESLLYSAWLRLPADVDSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLS 1026
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP I
Sbjct: 1027 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1086
Query: 1043 DIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTAS 1102
DIF+AFDEL L+KRGGQEIYVGPLGRHS LI YFE I GV KIK GYNPATWMLEVT S
Sbjct: 1087 DIFEAFDELLLLKRGGQEIYVGPLGRHSSHLIKYFEGIEGVSKIKGGYNPATWMLEVTTS 1146
Query: 1103 SQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWK 1162
+QE LGVDF +I++ S+LYRRNK LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWK
Sbjct: 1147 AQEFLLGVDFTEIYKNSDLYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWK 1206
Query: 1163 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQ 1222
Q SYWRNP YTAVRFFFT FIA++ G++FWD+G+K +K QDL NAMGSM+ A++FLG+Q
Sbjct: 1207 QRRSYWRNPPYTAVRFFFTTFIALIFGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQ 1266
Query: 1223 YCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYD 1282
SSVQPVV+VERTVFYRE+AAGMYS +P+A AQA++EIPY+F Q+VVY VIVYAM+G++
Sbjct: 1267 NSSSVQPVVAVERTVFYRERAAGMYSAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFE 1326
Query: 1283 WTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPR 1342
WTA KF WY FFM+ TLL FTFYGM+ VA TPN HIAAIV+ FYG+W LF GF++PR R
Sbjct: 1327 WTAAKFFWYLFFMFFTLLYFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTR 1386
Query: 1343 IPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMEN-GETVKHFLRDYFGFKHDFLGLVAG 1401
IPVWWRWYYWA PVAWTLYGL+ SQFGD++D+ E+ G+TV+ +L DYFGF+HDFLG+VA
Sbjct: 1387 IPVWWRWYYWACPVAWTLYGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAA 1446
Query: 1402 VLTCFVALFGFVFALGIKQLNFQRR 1426
V+ F LF F+FA IK NFQRR
Sbjct: 1447 VIVGFTILFLFIFAFAIKAFNFQRR 1471
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519409|ref|XP_003528365.1| PREDICTED: pleiotropic drug resistance protein 1-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2153 bits (5578), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1031/1448 (71%), Positives = 1199/1448 (82%), Gaps = 44/1448 (3%)
Query: 1 MEGSHDSYLASTSLRGNISR-WRTSSVGAFSKSLR--EEDDEEALKWAALEKLPTYNRLR 57
MEGS D Y A SLR N S WR S + AFS+S R E++DEEALKWAALEKLPTYNRLR
Sbjct: 1 MEGS-DIYRARNSLRANSSTVWRNSIMEAFSRSSRHEEDNDEEALKWAALEKLPTYNRLR 59
Query: 58 KGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKV 117
KGLLTTSRG A E+D++ LG Q+RQ+L+++L+ V E DNE LLKLK RIDRVGID+P +
Sbjct: 60 KGLLTTSRGVANEIDITELGFQERQKLLDRLINVAEEDNETLLLKLKERIDRVGIDIPTI 119
Query: 118 EVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKP 177
EVRYEHLNVE EAY+ S+ALP+F F T + E F L IL +KKH+TIL+DVSGIIKP
Sbjct: 120 EVRYEHLNVEAEAYVGSRALPTFLNFVTNMVESFFTSLHILSGKKKHVTILRDVSGIIKP 179
Query: 178 GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNH 237
RM LLLGPP+SGKTTLLLAL+GKLD +LKVSGRV YNGH+M EFVP+RTAAYISQHD H
Sbjct: 180 RRMALLLGPPSSGKTTLLLALSGKLDPTLKVSGRVNYNGHEMNEFVPQRTAAYISQHDVH 239
Query: 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV 297
IGEMTVRETLAFSARCQGVG+RY+LL+ELARRE EA IKPDPDIDVYMKA AT GQEA++
Sbjct: 240 IGEMTVRETLAFSARCQGVGTRYDLLSELARREKEAKIKPDPDIDVYMKAAATGGQEASL 299
Query: 298 ITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSS 357
+TDY LK+LGL++CADTM+GDEM+RGISGG+RKRVTTGEM+VGPA ALFMDEISTGLDSS
Sbjct: 300 VTDYVLKILGLDICADTMMGDEMLRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSS 359
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFE 417
TTFQIV L+Q+VHI +GTAVISLLQPAPETY+LFDDI+L+SDGQIVYQGPRE VLEFFE
Sbjct: 360 TTFQIVKSLRQYVHILNGTAVISLLQPAPETYELFDDIVLISDGQIVYQGPREYVLEFFE 419
Query: 418 SMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477
+GF+CP+RKGVADFLQEVTSRKDQ+QYW H+++ YRFVTV EFAEAFQSFHVG++I +E
Sbjct: 420 YVGFQCPERKGVADFLQEVTSRKDQEQYWIHRDESYRFVTVTEFAEAFQSFHVGRRIGEE 479
Query: 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAF 537
L TPFDKSKSH AALTT+ YG K+ELLK SRE LLMKRNSFVYIFKL Q++ +A+
Sbjct: 480 LATPFDKSKSHPAALTTKKYGVNKKELLKANFSREYLLMKRNSFVYIFKLFQLTILAILT 539
Query: 538 MTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPP 597
MT+FLRT+MH++SL DGG+Y GALFFA ++MFNGLAEISMTI KLP+FYKQRD F+P
Sbjct: 540 MTMFLRTEMHRNSLNDGGVYTGALFFAVVILMFNGLAEISMTIVKLPIFYKQRDLLFYPS 599
Query: 598 WAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLI 657
WAYAIPSWILKIPI+F+E AVWVFLTYYVIG DPN GR KQYL+ L +NQM+S LFR I
Sbjct: 600 WAYAIPSWILKIPITFIEAAVWVFLTYYVIGFDPNVGRLLKQYLVLLLINQMSSGLFRAI 659
Query: 658 AATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFL 699
AA GR+M+VA+TF DIK WW W YW SP+ Y QNAIV NEFL
Sbjct: 660 AALGRNMIVASTFGSFALLVLFALGGFVLSRNDIKNWWIWGYWISPLMYGQNAIVVNEFL 719
Query: 700 GYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQL 759
G SW FTPNS +++G+Q+L+SRGFF HAYWYW+G+GAL GF++LFN+ +T+A+T+LN
Sbjct: 720 GDSWNHFTPNSNKTLGIQILESRGFFTHAYWYWIGIGALIGFMILFNIIYTLALTYLNPY 779
Query: 760 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRG 819
+ P+ ITEESES + G + + R + SH KKRG
Sbjct: 780 DTPQTTITEESESGMTN----GIAESAGRA-----------------IAVMSSSHKKKRG 818
Query: 820 MILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879
MILPFEP+S+TFD++VYSVDMP EMK QGV ED+LVLL G+SGAFRPGVLTALMGVSGAG
Sbjct: 819 MILPFEPYSITFDQIVYSVDMPLEMKDQGVREDRLVLLKGVSGAFRPGVLTALMGVSGAG 878
Query: 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939
KTTLMDVL+GRKTGGYI GNI +SGYPK+QETFARISGYCEQNDIHSP VTVYESL+YSA
Sbjct: 879 KTTLMDVLAGRKTGGYIEGNIKVSGYPKRQETFARISGYCEQNDIHSPHVTVYESLVYSA 938
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
WLRLP EV++ TRKMFIEEVMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANP
Sbjct: 939 WLRLPAEVEAYTRKMFIEEVMELVELNPLRNSLVGLPGVNGLSTEQRKRLTIAVELVANP 998
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDELFLMKRGGQ
Sbjct: 999 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQ 1058
Query: 1060 EIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCS 1119
EIYVGPLGRHS Q+I YFE+I GV KIKDGYNPATWMLEVT +QE+ LGVDF++I+R S
Sbjct: 1059 EIYVGPLGRHSSQMIKYFESIEGVGKIKDGYNPATWMLEVTTPAQELNLGVDFHEIYRNS 1118
Query: 1120 ELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFF 1179
L RRNK LI EL P PGSKDL+FPTQY QS Q +ACLWKQHWSYWRNP YTAVRF
Sbjct: 1119 GLCRRNKRLISELGNPAPGSKDLHFPTQYPQSLLVQCLACLWKQHWSYWRNPPYTAVRFL 1178
Query: 1180 FTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFY 1239
T AVL G++FWD+G K QDLFNAMGSM+ A++F+G+Q +SVQPVV++ERTVFY
Sbjct: 1179 STTVTAVLFGTMFWDLGGKYSSRQDLFNAMGSMYNAVLFVGVQNSASVQPVVAIERTVFY 1238
Query: 1240 REKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITL 1299
RE+AAGMYS LP+ALAQ +IE+PY+FVQ+ Y VIVYAMMG++WT +KF WY FFMY TL
Sbjct: 1239 RERAAGMYSALPYALAQVIIELPYVFVQATSYSVIVYAMMGFEWTLQKFFWYVFFMYFTL 1298
Query: 1300 LLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWT 1359
FTFYGM+TVA+TPNHH+A++V++ FYGIW LF GFVI RP IPVWWRWYYWA PVAWT
Sbjct: 1299 CYFTFYGMMTVAVTPNHHVASVVASAFYGIWNLFSGFVIARPSIPVWWRWYYWACPVAWT 1358
Query: 1360 LYGLIASQFGDVEDQMENGE-TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGI 1418
+YGL+ASQFGD+ + M++ +V+ F+R + G KHDF+G+ A +++ F LF +FA+ I
Sbjct: 1359 IYGLVASQFGDITNVMKSENMSVQEFIRSHLGIKHDFVGVSAIMVSGFAVLFVIIFAVSI 1418
Query: 1419 KQLNFQRR 1426
K NFQRR
Sbjct: 1419 KAFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743360|emb|CBI36227.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2148 bits (5565), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1042/1447 (72%), Positives = 1203/1447 (83%), Gaps = 30/1447 (2%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S S+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVSSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK TIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKFTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MKA ATEGQ+ NVITDY LK+L
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDYTLKIL 306
Query: 307 GLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
GLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN L
Sbjct: 307 GLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSL 366
Query: 367 KQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFESMGF+CP+R
Sbjct: 367 RQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPER 426
Query: 427 KGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSK 486
KGVADFLQEVTSRKDQ+QYW K++PY FVTV++FAEAFQSFH G+K+ DEL TPFDK+K
Sbjct: 427 KGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTK 486
Query: 487 SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKM 546
SH AAL TE YG K+ELL CISRE LMKRNSFVYI +LTQ+ +A MT+FLRT+M
Sbjct: 487 SHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEM 546
Query: 547 HKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 606
HK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQR F+P WAYA+ SWI
Sbjct: 547 HKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWI 606
Query: 607 LKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVV 666
LKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQMASALFR IAA GR+M+V
Sbjct: 607 LKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIV 666
Query: 667 ANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFT 707
ANTF E++KKWW W YW SP+ YAQNAIV NEFLG SW K +
Sbjct: 667 ANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSS 726
Query: 708 PNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVIT 767
NS ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T+A+T+LN EKP+AVIT
Sbjct: 727 TNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVIT 786
Query: 768 EESESNKQDNRI------RGTV-QLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGM 820
EESE++K +I RG++ Q ++ E G IS +SS ++ + EA+ KRGM
Sbjct: 787 EESENSKTGGKIELSSHRRGSIDQTASTDEIGRSISSTSSSVRAEAIAEAR--RNTKRGM 844
Query: 821 ILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880
+LPF+P S+TFD++ YSVDMP+EMK QGVLED+L LL G+SGAFRPGVLTALMGVSGAGK
Sbjct: 845 VLPFQPLSITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGK 904
Query: 881 TTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW 940
TTLMDVL+GRKTGGYI GNI ISGYPKKQETF RISGYCEQNDIHSP VT++ESLLYSAW
Sbjct: 905 TTLMDVLAGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAW 964
Query: 941 LRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1000
LRLP +VDS+TRKMFIE+VMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANPS
Sbjct: 965 LRLPADVDSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPS 1024
Query: 1001 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060
IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQE
Sbjct: 1025 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQE 1084
Query: 1061 IYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSE 1120
IYVG LGRHS LI YFE I GV KIK GYNPATWMLEVT S+QE LGVDF +I++ S
Sbjct: 1085 IYVGLLGRHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSN 1144
Query: 1121 LYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFF 1180
LYRRNK LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWKQ SYWRNP YTAVRFFF
Sbjct: 1145 LYRRNKDLIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFF 1204
Query: 1181 TAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYR 1240
T FIA++ G++FWD+G+K K QDL NAMGSM+ A++FLG+Q SSVQPVV+VERTVFYR
Sbjct: 1205 TTFIALIFGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYR 1264
Query: 1241 EKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLL 1300
E+AAG+YS +P+A A A++EIPY+F Q+VVY VIVYAM+G++WTA KF WY FFM+ TLL
Sbjct: 1265 ERAAGIYSAMPYAFAHALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLL 1324
Query: 1301 LFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTL 1360
FTFYGM+ VA TPN HIAAIV+ FYG+W LF GF++PR RIPVWWRWYYWA PVAWTL
Sbjct: 1325 YFTFYGMMAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTL 1384
Query: 1361 YGLIASQFGDVEDQMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIK 1419
YGL+ SQFGD++D+ E+ G+TV+ +L DYFGF+HDFLG+VA V+ F LF F+FA IK
Sbjct: 1385 YGLVTSQFGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIK 1444
Query: 1420 QLNFQRR 1426
NFQRR
Sbjct: 1445 AFNFQRR 1451
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482652|ref|XP_003632801.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2138 bits (5539), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1035/1440 (71%), Positives = 1189/1440 (82%), Gaps = 41/1440 (2%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S S+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVSSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK TIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFINSAFNQIEDILNTLRILPSRKKKFTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MKA ATEGQ+ NVITDY LK+L
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAAATEGQKENVITDYTLKIL 306
Query: 307 GLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
GLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN L
Sbjct: 307 GLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSL 366
Query: 367 KQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFESMGF+CP+R
Sbjct: 367 RQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPER 426
Query: 427 KGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSK 486
KGVADFLQEVTSRKDQ+QYW K++PY FVTV++FAEAFQSFH G+K+ DEL TPFDK+K
Sbjct: 427 KGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKQFAEAFQSFHSGRKVGDELATPFDKTK 486
Query: 487 SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKM 546
SH AAL TE YG K+ELL CISRE LMKRNSFVYI +LTQ+ +A MT+FLRT+M
Sbjct: 487 SHPAALKTEKYGVRKKELLDACISREYWLMKRNSFVYILQLTQLIIMAAISMTIFLRTEM 546
Query: 547 HKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 606
HK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQR F+P WAYA+ SWI
Sbjct: 547 HKNSTDDGSIYMGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALSSWI 606
Query: 607 LKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVV 666
LKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQMASALFR IAA GR+M+V
Sbjct: 607 LKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIV 666
Query: 667 ANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFT 707
ANTF E++KKWW W YW SP+ YAQNAIV NEFLG SW K +
Sbjct: 667 ANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSS 726
Query: 708 PNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVIT 767
NS ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T+A+T+LN EKP+AVIT
Sbjct: 727 TNSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNAFEKPQAVIT 786
Query: 768 EESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPH 827
EESE++K G ++LS+ + RN+ KRGM+LPF+P
Sbjct: 787 EESENSKTG----GKIELSSHRREAIAEARRNT----------------KRGMVLPFQPL 826
Query: 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL 887
S+TFD++ YSVDMP+EMK QGVLED+L LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 827 SITFDDIRYSVDMPEEMKSQGVLEDRLKLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 886
Query: 888 SGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947
+GRKTGGYI GNI ISGYPKKQETF RISGYCEQNDIHSP VT++ESLLYSAWLRLP +V
Sbjct: 887 AGRKTGGYIEGNINISGYPKKQETFTRISGYCEQNDIHSPHVTIHESLLYSAWLRLPADV 946
Query: 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007
DS+TRKMFIE+VMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 947 DSKTRKMFIEKVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 1006
Query: 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVG LG
Sbjct: 1007 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGLLG 1066
Query: 1068 RHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKA 1127
RHS LI YFE I GV KIK GYNPATWMLEVT S+QE LGVDF +I++ S LYRRNK
Sbjct: 1067 RHSSCLIKYFEGIEGVSKIKGGYNPATWMLEVTTSAQEFLLGVDFTEIYKNSNLYRRNKD 1126
Query: 1128 LIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVL 1187
LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWKQ SYWRNP YTAVRFFFT FIA++
Sbjct: 1127 LIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALI 1186
Query: 1188 LGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMY 1247
G++FWD+G+K K QDL NAMGSM+ A++FLG+Q SSVQPVV+VERTVFYRE+AAG+Y
Sbjct: 1187 FGTMFWDLGTKRTKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGIY 1246
Query: 1248 SGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGM 1307
S +P+A A IEIPY+F Q+VVY VIVYAM+G++WTA KF WY FFM+ TLL FTFYGM
Sbjct: 1247 SAMPYAFAHVTIEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGM 1306
Query: 1308 LTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQ 1367
+ VA TPN HIAAIV+ FYG+W LF GF++PR RIPVWWRWYYWA PVAWTLYGL+ SQ
Sbjct: 1307 MAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQ 1366
Query: 1368 FGDVEDQMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
FGD++D+ E+ G+TV+ +L DYFGF+HDFLG+VA V+ F LF F+FA IK NFQRR
Sbjct: 1367 FGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546581|ref|XP_002514350.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223546806|gb|EEF48304.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2135 bits (5533), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1006/1452 (69%), Positives = 1194/1452 (82%), Gaps = 29/1452 (1%)
Query: 1 MEGSHDSYLASTSLRGNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGL 60
ME + + S L + WR +++ FSKS R+EDDEEALKWAALEKLPTY R+R+G+
Sbjct: 1 MENADTPRVGSARLSSS-DIWRNTTLEIFSKSSRDEDDEEALKWAALEKLPTYLRIRRGI 59
Query: 61 LTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVR 120
L G++ E+D+++LGL +++ L+ +LVK+ E DNEKFLLKLK RID+VG+D+P +EVR
Sbjct: 60 LIEQGGQSREIDINSLGLIEKRNLLERLVKIAEEDNEKFLLKLKDRIDKVGLDMPTIEVR 119
Query: 121 YEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRM 180
+EHL+VE EAY+ S+ALP+ F +FE NYL ILPSRKK L+IL DVSGIIKP RM
Sbjct: 120 FEHLSVEAEAYVGSRALPTMFNFSVNMFEAFLNYLHILPSRKKPLSILNDVSGIIKPRRM 179
Query: 181 TLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240
TLLLGPP+SGKTTLLLALAGKL LK SGRVTYNGH M EFVP+RT+AYISQ+D HIGE
Sbjct: 180 TLLLGPPSSGKTTLLLALAGKLTKDLKFSGRVTYNGHGMEEFVPQRTSAYISQYDIHIGE 239
Query: 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITD 300
MTVRETLAFSARCQGVGSRYE+L ELARRE EA IKPDPDID+YMKA A EGQEANV+TD
Sbjct: 240 MTVRETLAFSARCQGVGSRYEMLMELARREKEANIKPDPDIDIYMKAAALEGQEANVVTD 299
Query: 301 YYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTF 360
Y LK+LGLE+CADT+VGDEM RGISGG++KRVTTGEM+VGPA ALFMDEISTGLDS+TTF
Sbjct: 300 YILKILGLELCADTLVGDEMARGISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSTTTF 359
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMG 420
QIVN L+Q VHI SGTA+I+LLQPAPET++LFDDIILLSDGQIVYQGPRE VL+FFE MG
Sbjct: 360 QIVNSLRQSVHILSGTALIALLQPAPETFELFDDIILLSDGQIVYQGPRENVLDFFEYMG 419
Query: 421 FKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480
FKCP+RKGVADFLQEVTSRKDQ+QYW HK++PY FV+V EF+EAFQSFH+G+K+ DEL T
Sbjct: 420 FKCPERKGVADFLQEVTSRKDQEQYWAHKDQPYLFVSVNEFSEAFQSFHIGRKLGDELAT 479
Query: 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTL 540
PFDKSK+H +LTT+ YG K+EL K CISRE LLMKRNSFVYIFK+TQ+ + MTL
Sbjct: 480 PFDKSKAHPDSLTTKKYGVSKKELFKACISREYLLMKRNSFVYIFKMTQLIILGFITMTL 539
Query: 541 FLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAY 600
FLRT+MH+++ TDGG+Y GALFF +MFNG +E++MTI KLPVFYKQRD F+P WAY
Sbjct: 540 FLRTEMHRNTETDGGVYLGALFFTVTTIMFNGFSELAMTILKLPVFYKQRDLLFYPSWAY 599
Query: 601 AIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAAT 660
A+P+WILKIPI+F+EVAVWV +TYYVIG DPN RFFKQYL+ L NQMASALFRL AA
Sbjct: 600 ALPTWILKIPITFVEVAVWVVMTYYVIGFDPNIQRFFKQYLILLITNQMASALFRLTAAL 659
Query: 661 GRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS 702
GR+++VANT +++KKWW W YW SPM Y QNAI NEFLG S
Sbjct: 660 GRNIIVANTVGAFAMLTALVLGGFVISRDNVKKWWIWGYWFSPMMYVQNAISVNEFLGSS 719
Query: 703 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 762
W F PNS + +GV +LKSRG F AYWYW+G GAL G+I LFN FT+A+ +L+ KP
Sbjct: 720 WNHFPPNSTKPLGVTLLKSRGLFPEAYWYWIGFGALTGYIFLFNFLFTLALKYLDPFGKP 779
Query: 763 RAVITEESESNKQDNRIRGTVQLSA-------RGESGEDI-SGRNSSSKSLILTEAQGSH 814
+A+I++E+ S K R ++LS+ RG + + S R SS++ L+ A
Sbjct: 780 QAIISKEAYSEKTAVRTGEFIELSSKEKNFQERGSASHRVASSRTSSARVSSLSNA--FE 837
Query: 815 PKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 874
KRGM+LPF+P S+TF +V Y+V MPQEMK QG+ ED+L LL G+SGAFRPGVLTALMG
Sbjct: 838 NSKRGMVLPFQPLSITFADVRYAVQMPQEMKTQGITEDRLELLKGVSGAFRPGVLTALMG 897
Query: 875 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934
VSGAGKTTLMDVL+GRKTGGYI GNITISGYPKKQETFARISGYCEQ DIHSP VTVYES
Sbjct: 898 VSGAGKTTLMDVLAGRKTGGYIEGNITISGYPKKQETFARISGYCEQTDIHSPHVTVYES 957
Query: 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE 994
LLYSAWLRLPPEVDS+TR MF+EEVMELVEL L ++LVGLPGV+GLS EQRKRLT+AVE
Sbjct: 958 LLYSAWLRLPPEVDSDTRNMFVEEVMELVELTSLREALVGLPGVNGLSVEQRKRLTVAVE 1017
Query: 995 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054
LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIFDAFDEL L+
Sbjct: 1018 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLL 1077
Query: 1055 KRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFND 1114
KRGG+EIYVGP+GRH+C LI YFE I G+ KIKDGYNPATWMLEVT ++QEVALGVDF+D
Sbjct: 1078 KRGGEEIYVGPVGRHACHLIKYFEDIEGIPKIKDGYNPATWMLEVTTTAQEVALGVDFSD 1137
Query: 1115 IFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYT 1174
I++ SELYR+NKALI+ELS+P PGSKDLYFPTQYS+S TQ MACLWKQHWSYWRNP YT
Sbjct: 1138 IYKNSELYRKNKALIKELSRPLPGSKDLYFPTQYSKSFTTQCMACLWKQHWSYWRNPPYT 1197
Query: 1175 AVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVE 1234
AVR F FIA++ G++FW +G+K + QD+FNAMGSM+ A++FLG ++VQPVV++E
Sbjct: 1198 AVRLVFATFIALMFGTIFWKLGTKRSRRQDIFNAMGSMYAAVLFLGFHNSTAVQPVVAIE 1257
Query: 1235 RTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFF 1294
RTVFYRE+AAGMYS L +A Q MIE+PYI +Q+++Y VIVYAM+G++WT KF WY FF
Sbjct: 1258 RTVFYRERAAGMYSALAYAFGQVMIEVPYILIQTIIYGVIVYAMVGFEWTISKFFWYLFF 1317
Query: 1295 MYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWAN 1354
MY TLL FTFYGM+ VAITPNH+IAAIVS+ FY IW +F GF++PR RIP+WWRWYYWA
Sbjct: 1318 MYFTLLYFTFYGMMNVAITPNHNIAAIVSSAFYAIWNIFSGFIVPRTRIPIWWRWYYWAC 1377
Query: 1355 PVAWTLYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVF 1414
P+AWTLYGL+ASQFGD++++++ GETV+HFLR YFGF+HDF+G+VA VL LFGF+F
Sbjct: 1378 PIAWTLYGLVASQFGDIKEELDTGETVEHFLRSYFGFQHDFVGIVAVVLVGICVLFGFLF 1437
Query: 1415 ALGIKQLNFQRR 1426
A I+ NFQRR
Sbjct: 1438 AFSIRTFNFQRR 1449
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359482654|ref|XP_003632802.1| PREDICTED: pleiotropic drug resistance protein 1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2134 bits (5529), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1030/1440 (71%), Positives = 1184/1440 (82%), Gaps = 70/1440 (4%)
Query: 8 YLASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTTSRG 66
Y A SLR + S WR S FS+S R+EDDEEALKWAALEKLPTYNR+RKGLL S G
Sbjct: 7 YRAGGSLRKDSSSIWRNSGEEVFSRSSRDEDDEEALKWAALEKLPTYNRMRKGLLMGSAG 66
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNV 126
EA EVD+ NLG Q+++ L+ +LVK+ E DNEKFLLKL++RIDRVGIDLP++EVR+EHL +
Sbjct: 67 EASEVDIHNLGFQEKKNLVERLVKIAEEDNEKFLLKLRNRIDRVGIDLPEIEVRFEHLTI 126
Query: 127 EGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186
+ EA++ S+ALPSF EDI N L ILPSRKK LTIL DVSGIIKP RMTLLLGP
Sbjct: 127 DAEAHVGSRALPSFIYSAFNQIEDILNTLRILPSRKKKLTILHDVSGIIKPRRMTLLLGP 186
Query: 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRET 246
P+SGKTTLLLAL+GKLDSSLKV+G+VTYNGH M EFVP+RTA YISQHD HIGEMTVRET
Sbjct: 187 PSSGKTTLLLALSGKLDSSLKVTGKVTYNGHGMNEFVPQRTATYISQHDTHIGEMTVRET 246
Query: 247 LAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306
LAFSARCQGVG RY++L EL+RRE A IKPDPDIDV+MKA+ATEGQ+ NVITDY LK+L
Sbjct: 247 LAFSARCQGVGDRYDMLAELSRREKAANIKPDPDIDVFMKAVATEGQKENVITDYTLKIL 306
Query: 307 GLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
GLEVCADT+VGD+MIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTGLDSSTT+QIVN L
Sbjct: 307 GLEVCADTLVGDQMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTGLDSSTTYQIVNSL 366
Query: 367 KQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+Q +HI +GTA+ISLLQPAPETYDLFDDIILLSD QIVYQGPRE VL+FFESMGF+CP+R
Sbjct: 367 RQTIHILNGTALISLLQPAPETYDLFDDIILLSDSQIVYQGPREDVLDFFESMGFRCPER 426
Query: 427 KGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSK 486
KGVADFLQEVTSRKDQ+QYW K++PY FVTV+EFAEAFQSFH+G+K+ EL TPFDK+K
Sbjct: 427 KGVADFLQEVTSRKDQQQYWARKDEPYSFVTVKEFAEAFQSFHIGRKLGHELATPFDKTK 486
Query: 487 SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKM 546
SH AAL TE YG K+ELL CISRE LLMKRNSFVYIFKLTQ+ +A MT+FLRT+M
Sbjct: 487 SHPAALKTEKYGVRKKELLDACISREYLLMKRNSFVYIFKLTQLIIMAAISMTIFLRTEM 546
Query: 547 HKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWI 606
HK+S DG IY GALFF M+MFNG++E++MTIAKLPVFYKQR F+P WAYA+PSWI
Sbjct: 547 HKNSTDDGSIYTGALFFTVVMIMFNGMSELAMTIAKLPVFYKQRGLLFYPAWAYALPSWI 606
Query: 607 LKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVV 666
LKIPI+F+EVAVWVF++YYVIG DPN GR FKQYLL + VNQMASALFR IAA GR+M+V
Sbjct: 607 LKIPITFVEVAVWVFMSYYVIGFDPNVGRLFKQYLLLVLVNQMASALFRFIAAAGRNMIV 666
Query: 667 ANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFT 707
ANTF E++KKWW W YW SP+ YAQNAIV NEFLG SW K +
Sbjct: 667 ANTFGSFSLLLLFALGGFVLSRENVKKWWIWGYWSSPLMYAQNAIVVNEFLGKSWSKNSS 726
Query: 708 PNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVIT 767
+S ES+GV VLKSRGFF AYWYW+G GAL GFIL+FN +T+A+T+LN+ I
Sbjct: 727 TDSTESLGVAVLKSRGFFTEAYWYWIGAGALLGFILVFNFCYTVALTYLNE------AIA 780
Query: 768 EESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPH 827
E +N K+GM+LPF+P
Sbjct: 781 EARRNN-------------------------------------------KKGMVLPFQPL 797
Query: 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL 887
S+TFD++ YSVDMP+EMK QGVLED+L LL G+SGAFRPGVLTALMGVSGAGKTTLMDVL
Sbjct: 798 SITFDDIRYSVDMPEEMKSQGVLEDRLELLKGVSGAFRPGVLTALMGVSGAGKTTLMDVL 857
Query: 888 SGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947
+GRKTGGYI GNI ISGYPKKQETFARISGYCEQNDIHSP VT++ESLLYSAWLRLP +V
Sbjct: 858 AGRKTGGYIEGNINISGYPKKQETFARISGYCEQNDIHSPHVTIHESLLYSAWLRLPADV 917
Query: 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007
DS+TRKMFIEEVMELVEL PL SLVGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEP
Sbjct: 918 DSKTRKMFIEEVMELVELTPLKDSLVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEP 977
Query: 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067
TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KRGGQEIYVGPLG
Sbjct: 978 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQEIYVGPLG 1037
Query: 1068 RHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKA 1127
RHS LI YF+ I GV KIKDGYNPATWMLEVT+S+QE LGVDF +I++ S+LYRRNK
Sbjct: 1038 RHSSHLIKYFQGIEGVSKIKDGYNPATWMLEVTSSAQEFLLGVDFTEIYKNSDLYRRNKD 1097
Query: 1128 LIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVL 1187
LI+ELS+P PGSKDLYFPTQYSQS FTQ MACLWKQ SYWRNP YTAVRFFFT FIA++
Sbjct: 1098 LIKELSQPAPGSKDLYFPTQYSQSFFTQCMACLWKQRRSYWRNPPYTAVRFFFTTFIALI 1157
Query: 1188 LGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMY 1247
G++FWD+G+K +K QDL NAMGSM+ A++FLG+Q SSVQPVV+VERTVFYRE+AAGMY
Sbjct: 1158 FGTMFWDLGTKRKKQQDLSNAMGSMYAAVLFLGVQNSSSVQPVVAVERTVFYRERAAGMY 1217
Query: 1248 SGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGM 1307
S +P+A AQA++EIPY+F Q+VVY VIVYAM+G++WTA KF WY FFM+ TLL FTFYGM
Sbjct: 1218 SAMPYAFAQALVEIPYVFAQAVVYGVIVYAMIGFEWTAAKFFWYLFFMFFTLLYFTFYGM 1277
Query: 1308 LTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQ 1367
+ VA TPN HIAAIV+ FYG+W LF GF++PR RIPVWWRWYYWA PVAWTLYGL+ SQ
Sbjct: 1278 MAVAATPNQHIAAIVAAAFYGLWNLFSGFIVPRTRIPVWWRWYYWACPVAWTLYGLVTSQ 1337
Query: 1368 FGDVEDQMEN-GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
FGD++D+ E+ G+TV+ +L DYFGF+HDFLG+VA V+ F LF F+FA IK NFQRR
Sbjct: 1338 FGDIQDRFEDTGDTVEQYLNDYFGFEHDFLGVVAAVIVGFTVLFLFIFAFAIKAFNFQRR 1397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743343|emb|CBI36210.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2133 bits (5527), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1026/1452 (70%), Positives = 1195/1452 (82%), Gaps = 52/1452 (3%)
Query: 3 GSHDSYL--------ASTSLRGNISR-WRTSSVGAFSKSLREEDDEEALKWAALEKLPTY 53
G DSYL AS SLR N S WR+S FS+S R+EDDEEALKWAALEKLPTY
Sbjct: 215 GEGDSYLIFSFFGLQASGSLRRNGSSIWRSSGADVFSRSSRDEDDEEALKWAALEKLPTY 274
Query: 54 NRLRKGLLTTSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGID 113
NRLR+GLL S GEA E+D+ NLG Q+++ L+ +LVKV E DNEKFLLKLK+RIDRVGID
Sbjct: 275 NRLRRGLLMGSEGEASEIDIHNLGFQEKKNLVERLVKVAEEDNEKFLLKLKNRIDRVGID 334
Query: 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSG 173
+P++EVR+EHL ++ EA++ S+ALPSF F E I N + ILPS+K+ TIL DVSG
Sbjct: 335 VPEIEVRFEHLTIDAEAFVGSRALPSFHNFIFNKLEGILNAVRILPSKKRKFTILNDVSG 394
Query: 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQ 233
IIKP R+TLLLGPP+SGKTTLLLALAGKLD +LKV GRVTYNGH M EFVP+RTAAYISQ
Sbjct: 395 IIKPRRLTLLLGPPSSGKTTLLLALAGKLDPNLKVMGRVTYNGHGMNEFVPQRTAAYISQ 454
Query: 234 HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQ 293
HD HIGEMTVRETLAFSARCQGVG RY++L EL+RRE A IKPDPD+DV+MKA ATEGQ
Sbjct: 455 HDTHIGEMTVRETLAFSARCQGVGDRYDMLAELSRREKAANIKPDPDLDVFMKAAATEGQ 514
Query: 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353
+ NV+TDY LK+LGL++CADTMVGDEMIRGISGG+RKRVTTGEM+VGP+ ALFMDEISTG
Sbjct: 515 KENVVTDYTLKILGLDICADTMVGDEMIRGISGGQRKRVTTGEMLVGPSKALFMDEISTG 574
Query: 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
LDSSTTFQI+N LKQ +HI +GTAVISLLQPAPETY+LFDDIILLSD QIVYQGPRE VL
Sbjct: 575 LDSSTTFQIINSLKQTIHILNGTAVISLLQPAPETYNLFDDIILLSDSQIVYQGPREDVL 634
Query: 414 EFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQK 473
EFFES+GFKCP+RKG ADFLQEVTSRKDQ QYW K+ PY FVTV+EFAEAFQSFH+G+K
Sbjct: 635 EFFESIGFKCPERKGEADFLQEVTSRKDQAQYWARKDVPYSFVTVKEFAEAFQSFHIGRK 694
Query: 474 ISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSV 533
++DEL +PFD++KSH AALTT+ YG K+ELL +SRE LLMKRNSFVYIFKLTQ++ V
Sbjct: 695 VADELASPFDRAKSHPAALTTKKYGVRKKELLDANMSREYLLMKRNSFVYIFKLTQLAVV 754
Query: 534 ALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFR 593
A+ MTLFLRT+M+K+S DG IY GALFF M+MFNG+AE++MTIAKLPVFYKQRDF
Sbjct: 755 AVIAMTLFLRTEMNKNSTEDGSIYTGALFFTVVMIMFNGMAELAMTIAKLPVFYKQRDFL 814
Query: 594 FFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASAL 653
F+P WAYA+P+W+LKIPI+F+EVAVWVF+TYYVIG DPN R F+QYLL L VNQMAS L
Sbjct: 815 FYPAWAYALPTWVLKIPITFVEVAVWVFITYYVIGFDPNVERLFRQYLLLLLVNQMASGL 874
Query: 654 FRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVA 695
FR IAA GR+M+VA+TF +++KKWW W YW SP+ YAQNAIV
Sbjct: 875 FRFIAAAGRNMIVASTFGAFAVLMLMALGGFILSHDNVKKWWIWGYWSSPLMYAQNAIVV 934
Query: 696 NEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITF 755
NEFLG SW K NS ES+G+ VLKSRGFF A+WYW+G GAL GFI +FN +T+ + +
Sbjct: 935 NEFLGKSWSKNVTNSTESLGITVLKSRGFFTDAHWYWIGAGALLGFIFVFNFFYTLCLNY 994
Query: 756 LNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHP 815
LN EKP+AVITEES++ K ++++ ++ A+G+H
Sbjct: 995 LNPFEKPQAVITEESDNAK------------------------TATTEHMVEAIAEGNHN 1030
Query: 816 KKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGV 875
KK+GM+LPF+PHS+TFD++ YSVDMP+EMK QG LED+L LL G+SGAFRPGVLTALMGV
Sbjct: 1031 KKKGMVLPFQPHSITFDDIRYSVDMPEEMKSQGALEDRLELLKGVSGAFRPGVLTALMGV 1090
Query: 876 SGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL 935
SGAGKTTLMDVL+GRKTGGYI GNI+ISGYPKKQETFARISGYCEQNDIHSP VTV+ESL
Sbjct: 1091 SGAGKTTLMDVLAGRKTGGYIEGNISISGYPKKQETFARISGYCEQNDIHSPHVTVHESL 1150
Query: 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL 995
LYSAWLRLP +V+SETRKMFIEEVMELVEL PL +LVGLPGV+GLSTEQRKRLTIAVEL
Sbjct: 1151 LYSAWLRLPSDVNSETRKMFIEEVMELVELTPLRDALVGLPGVNGLSTEQRKRLTIAVEL 1210
Query: 996 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMK
Sbjct: 1211 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1270
Query: 1056 RGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1115
RGGQEIYVGPLGRHS LI+YFE I GV KIKDGYNPATWMLEVT +QE LGVDF +I
Sbjct: 1271 RGGQEIYVGPLGRHSSHLINYFEGIEGVSKIKDGYNPATWMLEVTTGAQEGTLGVDFTEI 1330
Query: 1116 FRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTA 1175
++ S+LYRRNK LI+ELS+P PG+KDLYF TQYSQ FTQF+ACLWKQ WSYWRNP YTA
Sbjct: 1331 YKNSDLYRRNKDLIKELSQPAPGTKDLYFATQYSQPFFTQFLACLWKQRWSYWRNPPYTA 1390
Query: 1176 VRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVER 1235
VRF FT FIA++ G +FWD+G++ + QDL NAMGSM+ A++FLG+Q SVQPV+ VER
Sbjct: 1391 VRFLFTTFIALMFGLIFWDLGTRRTRQQDLLNAMGSMYAAVLFLGVQNAQSVQPVIVVER 1450
Query: 1236 TVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFM 1295
TVFYRE+AAGMYS LP+A QA++EIPY+F Q+VVY VIVY M+G++WTA KF WY FFM
Sbjct: 1451 TVFYRERAAGMYSALPYAFGQALVEIPYVFAQAVVYGVIVYGMIGFEWTATKFFWYLFFM 1510
Query: 1296 YITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANP 1355
+ TLL FTFYGM+ VA TPN HIA+I++ FY +W LF GF++PR RIPVWWRWY W P
Sbjct: 1511 FCTLLYFTFYGMMAVAATPNQHIASIIAATFYTLWNLFSGFIVPRNRIPVWWRWYCWICP 1570
Query: 1356 VAWTLYGLIASQFGDVEDQ-MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVF 1414
VAWTLYGL+ASQFGD++ +EN +TVK FL DYFGFKHDFLG+VA V+ FV LF F+F
Sbjct: 1571 VAWTLYGLVASQFGDIQSTLLENNQTVKQFLDDYFGFKHDFLGVVAAVVVGFVVLFLFIF 1630
Query: 1415 ALGIKQLNFQRR 1426
A IK NFQ+R
Sbjct: 1631 AYAIKAFNFQKR 1642
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1426 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.976 | 0.980 | 0.540 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.978 | 0.962 | 0.489 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.959 | 0.968 | 0.487 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.437 | 0.438 | 0.736 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.526 | 0.511 | 0.562 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.515 | 0.505 | 0.583 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.446 | 0.437 | 0.636 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.450 | 0.445 | 0.603 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.427 | 0.430 | 0.632 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.438 | 0.438 | 0.596 | 0.0 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4107 (1450.8 bits), Expect = 0., P = 0.
Identities = 774/1433 (54%), Positives = 1031/1433 (71%)
Query: 21 WRTSSVGAFSKS--LREE-DDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFEVDVSNLG 77
W S+ AFS+S ++E +DEE L+WAAL++LPTY+R+R+G+ GE E+ + NL
Sbjct: 2 WN-SAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 78 LQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKAL 137
+++ L+++LV E D E+F +++ R D V + PK+EVR+++L VE ++ S+AL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 138 PSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXX 197
P+ F + E + + ++ ++ LTIL +SG+I+P R+TLLLGPP
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 198 XXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257
SG++TYNG+D+ E + RT+AY+SQ D H+ EMTVR+TL F+ RCQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317
+Y++L ELARRE AGI PD D+D++MK++A G E +++ +Y +K+LGL+ CADT+VG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
DEMI+GISGG++KR+TTGE++VGPA LFMDEIS GLDSSTT QI+ ++ H GT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 378 VISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437
VISLLQP+PETY+LFDD+IL+S+GQI+YQGPR+ VL+FF S+GF CP RK VADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 438 SRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVY 497
S+KDQ+QYW+ +PYR+V +FAEAF+S+ G+K++ +L PFDK +H AAL+T Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 498 GAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557
G K ELLK + + LMK+N+F+Y+FK Q+ VAL MT+F RT MH +++ DG IY
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 558 AGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVA 617
G+L+F+ +++FNG E+ M +AKLPV YK RD F+P WAY +PSW+L IP S +E A
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 618 VWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------- 670
WV +TYY IG DP RF +Q+LL+ +++QM+ LFR++ + GR M+VANTF
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 671 -----------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN-SYESIGVQV 718
+ I WW W YW SP+ YAQNA NEFLG++W+K N + +S+G+ +
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 719 LKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNR 778
LK R F+ YWYW T+ + LN K +AV++ E E ++++ +
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSRE-ELDEREKK 779
Query: 779 IRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSV 838
+G + E E + ++S S G + K RGM+LPF+P SL+F + Y V
Sbjct: 780 RKGDEFVV---ELREYL--QHSGS-------IHGKYFKNRGMVLPFQPLSLSFSNINYYV 827
Query: 839 DMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITG 898
D+P +K QG+LED+L LL ++GAFRPGVLTAL+GVSGAGKTTLMDVL+GRKTGG I G
Sbjct: 828 DVPLGLKEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEG 887
Query: 899 NITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
++ ISG+PK+QETFARISGYCEQND+HSP +TV ESLL+SA LRLP ++DSET++ F+ E
Sbjct: 888 DVYISGFPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHE 947
Query: 959 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
VMELVEL L +LVGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAI
Sbjct: 948 VMELVELTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1007
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1078
VMRTVRN V+TGRT+VCTIHQP IDIF++FDEL MKRGG+ IY GPLG+ SC+LI YFE
Sbjct: 1008 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFE 1067
Query: 1079 AIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG 1138
+I GV+KIK G+NPA WML+VTAS++E LGVDF +I+R S L +RNK LIE LSKP+
Sbjct: 1068 SIEGVQKIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNI 1127
Query: 1139 SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSK 1198
+K++ FPT+YSQS ++QF+ACLWKQ+ SYWRNPQYTAVRFF+T I+++LG++ W GSK
Sbjct: 1128 AKEIEFPTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSK 1187
Query: 1199 TRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAM 1258
Q LFNAMGSM+ A++F+G+ ++ QPVVS+ER V YRE+AAGMYS LP+A AQ
Sbjct: 1188 RDTQQQLFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVF 1247
Query: 1259 IEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHI 1318
IE PY+ QS +Y I YAM ++W+A KF WY FFMY +++ FTFYGM+T AITPNH++
Sbjct: 1248 IEFPYVLAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNV 1307
Query: 1319 AAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENG 1378
A+I++ FY +W LF GF+IP RIP+WWRWYYWANPVAWTLYGL+ SQ+GD E ++
Sbjct: 1308 ASIIAAPFYMLWNLFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLS 1367
Query: 1379 E-----TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
+ VK L D G+KHDFLG+ A ++ F F VFA IK NFQRR
Sbjct: 1368 DGIHQVMVKQLLEDVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3495 (1235.4 bits), Expect = 0., P = 0.
Identities = 707/1445 (48%), Positives = 954/1445 (66%)
Query: 12 TSLRGNISRWRTSS-VGAFSKS--LREEDDEEALKWAALEKLPTYNRLRKGLLT------ 62
+S R + S +R+SS + + + D E AL+WA +E+LPT R+R LL
Sbjct: 26 SSFRRHTSSFRSSSSIYEVENDGDVNDHDAEYALQWAEIERLPTVKRMRSTLLDDGDESM 85
Query: 63 TSRGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYE 122
T +G VDV+ LG +R +I KL+K E DN K L K++ RIDRVG++LP +EVRYE
Sbjct: 86 TEKGRRV-VDVTKLGAVERHLMIEKLIKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYE 144
Query: 123 HLNVEGEAYLAS-KALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMT 181
L V E + KALP+ V ++ G K + I+ DV+GIIKPGR+T
Sbjct: 145 SLKVVAECEVVEGKALPTLWNTAKRVLSELVKLTGAKTHEAK-INIINDVNGIIKPGRLT 203
Query: 182 LLLGPPXXXXXXXXXXXXXXXXXXXXVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241
LLLGPP SG ++YNGH + EFVP++T+AYISQ+D HI EM
Sbjct: 204 LLLGPPSCGKTTLLKALSGNLENNLKCSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEM 263
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TVRET+ FSARCQGVGSR +++ E+++RE E GI PD ++D YMKAI+ EG + ++ TDY
Sbjct: 264 TVRETVDFSARCQGVGSRTDIMMEVSKREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDY 323
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQ 361
LK+LGL++CA+ ++GD M RGISGG++KR+TT EM+VGP ALFMDEI+ GLDSST FQ
Sbjct: 324 ILKILGLDICAEILIGDVMRRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQ 383
Query: 362 IVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
IV L+Q HI+S T ++SLLQPAPE+YDLFDDI+L++ G+IVY GPR VL FFE GF
Sbjct: 384 IVKSLQQFAHISSATVLVSLLQPAPESYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGF 443
Query: 422 KCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTP 481
+CP+RKGVADFLQEV S+KDQ QYW H++ PY FV+VE ++ F+ +G+KI D L P
Sbjct: 444 RCPERKGVADFLQEVISKKDQAQYWWHEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKP 503
Query: 482 FDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541
+D+SKSH+ AL+ VY EL CISRE LLMKRN FVYIFK Q+ A MT+F
Sbjct: 504 YDRSKSHKDALSFSVYSLPNWELFIACISREYLLMKRNYFVYIFKTAQLVMAAFITMTVF 563
Query: 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYA 601
+RT+M + G Y ALFFA +++ +G E+SMT +L VFYKQ+ F+P WAYA
Sbjct: 564 IRTRMGI-DIIHGNSYMSALFFALIILLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYA 622
Query: 602 IPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATG 661
IP+ +LK+P+SF E VW L+YYVIG P A RFFKQ++L AV+ + ++FR +AA
Sbjct: 623 IPATVLKVPLSFFESLVWTCLSYYVIGYTPEASRFFKQFILLFAVHFTSISMFRCLAAIF 682
Query: 662 RSMVV---ANTFEDIKKWWKWAYWCSPMS---YAQNAIVANEF----LGYSWKKF-TP-- 708
+++V A +F + + + P S + + AN +G S +F P
Sbjct: 683 QTVVASITAGSFGILFTFVFAGFVIPPPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRW 742
Query: 709 NSYE----SIGVQVLKSRGFFAHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRA 764
N + ++G +L++RG + Y YW T+A+TFL RA
Sbjct: 743 NQMQPNNFTLGRTILQTRGMDYNGYMYWVSLCALLGFTVLFNIIFTLALTFLKSPTSSRA 802
Query: 765 VITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPF 824
+I+++ S Q GT + S ED S R ++ S + TE + M+LPF
Sbjct: 803 MISQDKLSELQ-----GTEK------STEDSSVRKKTTDSPVKTEEEDK------MVLPF 845
Query: 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM 884
+P ++TF ++ Y VDMP EM+ QG + KL LL+ ++GAFRPG+LTALMGVSGAGKTTL+
Sbjct: 846 KPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPGILTALMGVSGAGKTTLL 905
Query: 885 DVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 944
DVL+GRKT GYI G+I ISG+PK QETFAR+SGYCEQ DIHSP +TV ES++YSAWLRL
Sbjct: 906 DVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSPNITVEESVIYSAWLRLA 965
Query: 945 PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004
PE+D+ T+ F+++V+E +EL + SLVG+ GVSGLSTEQRKRLTIAVELVANPSIIFM
Sbjct: 966 PEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRKRLTIAVELVANPSIIFM 1025
Query: 1005 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
DEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQP IDIF+AFDEL L+KRGG+ IY G
Sbjct: 1026 DEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEAFDELVLLKRGGRMIYTG 1085
Query: 1065 PLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRR 1124
PLG+HS +I YFE++P + KIKD +NPATWML+V++ S E+ LGVDF I+ S LY+R
Sbjct: 1086 PLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIELGVDFAKIYHDSALYKR 1145
Query: 1125 NKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFI 1184
N L+++LS+P GS D+ F ++QS + QF + LWK + SYWR+P Y +R T
Sbjct: 1146 NSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSYWRSPSYNLMRMMHTLVS 1205
Query: 1185 AVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAA 1244
+++ G+LFW G Q +F G+++ ++FLG+ C+S ER V YRE+ A
Sbjct: 1206 SLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASALQYFETERNVMYRERFA 1265
Query: 1245 GMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTF 1304
GMYS +AL Q + EIPYIF+Q+ + ++ Y M+G+ +A K W + M+ +LL F +
Sbjct: 1266 GMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAYKVFWSLYSMFCSLLTFNY 1325
Query: 1305 YGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLI 1364
M V+ITPN +AAI+ +LFY + LF GF+IP+ ++P WW W Y+ P +WTL G I
Sbjct: 1326 LAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFI 1385
Query: 1365 ASQFGDVEDQME---NGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQL 1421
+SQ+GD+ +++ TV FL+DYFGF HD L + A V F +FA + +L
Sbjct: 1386 SSQYGDIHEEINVFGQSTTVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKL 1445
Query: 1422 NFQRR 1426
NFQRR
Sbjct: 1446 NFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3454 (1220.9 bits), Expect = 0., P = 0.
Identities = 691/1418 (48%), Positives = 941/1418 (66%)
Query: 36 EDDEEALKWAALEKLPTYNRLRKGLLTTSRGEAFE-----VDVSNLGLQQRQRLINKLVK 90
++ E AL+WA +++LPT+ RLR L+ GE E VDV+ LG +R +I KL+K
Sbjct: 19 DEAEHALQWAEIQRLPTFKRLRSSLVD-KYGEGTEKGKKVVDVTKLGAMERHLMIEKLIK 77
Query: 91 VTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLAS-KALPSFTKFYTTVFE 149
E DN K L K++ R++RVG++ P +EVRYEHL VE + KALP+ VF
Sbjct: 78 HIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLWNSLKHVFL 137
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPXXXXXXXXXXXXXXXXXXXXVS 209
D+ G+ + + ++ IL DVSGII PGR+TLLLGPP
Sbjct: 138 DLLKLSGVR-TNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCY 196
Query: 210 GRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
G ++YNGH + E VP++T+AYISQHD HI EMT RET+ FSARCQGVGSR +++ E+++R
Sbjct: 197 GEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSRTDIMMEVSKR 256
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E + GI PDP+ID YMKAI+ +G + ++ TDY LK+LGL++CA+T+VG+ M RGISGG++
Sbjct: 257 EKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNAMKRGISGGQK 316
Query: 330 KRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
KR+TT EM+VGP ALFMDEI+ GLDSST FQI+ L+Q HI + T +SLLQPAPE+Y
Sbjct: 317 KRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFVSLLQPAPESY 376
Query: 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHK 449
DLFDDI+L+++G+IVY GPR+ VL+FFE GF+CP+RKGVADFLQEV S+KDQ QYW H+
Sbjct: 377 DLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISKKDQGQYWLHQ 436
Query: 450 EKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCI 509
P+ FV+V+ ++ F+ +G+KI + L P+D SK+H+ AL+ VY K EL + CI
Sbjct: 437 NLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSLPKWELFRACI 496
Query: 510 SRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVM 569
SRE LLMKRN FVY+FK Q+ A+ MT+F+RT+M + G Y LFFAT +++
Sbjct: 497 SREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDI-DIIHGNSYMSCLFFATVVLL 555
Query: 570 FNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629
+G+ E+SMT+ +L VFYKQ+ F+P WAYAIP+ +LKIP+SF E VW LTYYVIG
Sbjct: 556 VDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVWTCLTYYVIGY 615
Query: 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAA---TGRSMVVANTFEDIKKW----WKWAYW 682
P RFF+Q+++ AV+ + ++FR IAA TG + + A +F + + + Y
Sbjct: 616 TPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITFVFAGFAIPYT 675
Query: 683 CSP----MSYAQNAIVANEFLGYSWKKFTPNSYE-------SIGVQVLKSRGFFAHAYWY 731
P + N I E +G S +F ++ ++G +L+SRG Y Y
Sbjct: 676 DMPGWLKWGFWVNPISYAE-IGLSVNEFLAPRWQKMQPTNVTLGRTILESRGLNYDDYMY 734
Query: 732 WXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGES 791
W T+A++FL R +I+++ S Q GT S +
Sbjct: 735 WVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQ-----GTKDSSVK--- 786
Query: 792 GEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLE 851
+N S I T P K MILPF+P ++TF ++ Y VD+P EMK QG E
Sbjct: 787 ------KNKPLDSSIKTNED---PGK--MILPFKPLTITFQDLNYYVDVPVEMKGQGYNE 835
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
KL LL+ ++GAFRPGVLTALMG+SGAGKTTL+DVL+GRKT GYI G I ISG+ K QET
Sbjct: 836 KKLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQET 895
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
FAR+SGYCEQ DIHSP +TV ESL+YSAWLRL PE++ +T+ F+++V+E +EL+ + +
Sbjct: 896 FARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDA 955
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
LVG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGR
Sbjct: 956 LVGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGR 1015
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYN 1091
T+VCTIHQP I IF+AFDEL L+KRGG+ IY GPLG+HS +I YF+ IPGV KI+D YN
Sbjct: 1016 TIVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYN 1075
Query: 1092 PATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQS 1151
PATWMLEVT+ S E L +DF I+ S+LY+ N L++ELSKP GS DL+F ++Q+
Sbjct: 1076 PATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQN 1135
Query: 1152 AFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGS 1211
+ QF +CLWK SYWR+P Y +R T + + G LFW+ G K Q+LF +G+
Sbjct: 1136 WWEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGA 1195
Query: 1212 MFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVY 1271
++ ++F+G+ C+S ER V YRE+ AGMYS +ALAQ + EIPYIF+QS +
Sbjct: 1196 IYGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEF 1255
Query: 1272 CVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWY 1331
+++Y M+G+ + K W + M+ LL F + M ++ITPN +AAI+ +LF+ +
Sbjct: 1256 VIVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFN 1315
Query: 1332 LFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMEN-GET--VKHFLRDY 1388
+F GF+IP+P+IP WW W+Y+ P +WTL +SQ+GD+ ++ GET V FL DY
Sbjct: 1316 IFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVASFLEDY 1375
Query: 1389 FGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
FGF HD L + A +L F ++A + +LNFQ+R
Sbjct: 1376 FGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2479 (877.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 462/627 (73%), Positives = 537/627 (85%)
Query: 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGL 860
S++S + EA G++ KKRGM+LPFEPHS+TFD VVYSVDMPQEM QG ED+LVLL G+
Sbjct: 799 SARSEGVVEA-GAN-KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQEDRLVLLKGV 856
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE 920
+GAFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI GNITISGYPK Q+TFARISGYCE
Sbjct: 857 NGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQTFARISGYCE 916
Query: 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980
Q DIHSP VTVYESL+YSAWLRLP EVD RK+FIEEVMELVEL PL Q+LVGLPG SG
Sbjct: 917 QTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQALVGLPGESG 976
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 977 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1036
Query: 1041 GIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVT 1100
IDIF+AFDELFL+KRGG+EIYVGPLG S LI+YFE+I G+ KI +GYNPATWMLEV+
Sbjct: 1037 SIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGYNPATWMLEVS 1096
Query: 1101 ASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACL 1160
+SQE ALGVDF +++ SELY+RNK LI+ELS+P PGSKDLYFPTQYSQS TQ MA L
Sbjct: 1097 TTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQSFLTQCMASL 1156
Query: 1161 WKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLG 1220
WKQHWSYWRNP YTAVRF FT IA++ G++FWD+G KT+ QDL NAMGSM+TA++FLG
Sbjct: 1157 WKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMGSMYTAVLFLG 1216
Query: 1221 LQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMG 1280
LQ +SVQPVV+VERTVFYRE+AAGMYS +P+A AQ IEIPY+ VQ++VY +IVYAM+G
Sbjct: 1217 LQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIVYGLIVYAMIG 1276
Query: 1281 YDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPR 1340
++WTA KF WY FFMY + L FTFYGM+ VA+TPNHHIA++VS+ FYGIW LF GF+IPR
Sbjct: 1277 FEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIPR 1336
Query: 1341 PRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQM-ENGETVKHFLRDYFGFKHDFLGLV 1399
P +PVWW WYYW PVAWTLYGLIASQFGD+ + M ++ +VK F+R+++G++ FLG+V
Sbjct: 1337 PSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSNMSVKQFIREFYGYREGFLGVV 1396
Query: 1400 AGVLTCFVALFGFVFALGIKQLNFQRR 1426
A + F LF +FA+GIK NFQ+R
Sbjct: 1397 AAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2287 (810.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 429/763 (56%), Positives = 553/763 (72%)
Query: 673 IKKWWKWAYWCSPMSYAQNAIVANEFLGYSW--KKFTPNSYESIGVQVLKSRGFFAHAYW 730
I WW WAYW SP++YA N +V NE W K + NS +G VL + + W
Sbjct: 710 IPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIKLGTMVLNTWDVYHQKNW 769
Query: 731 YWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNR--IRGTVQLSAR 788
YW T+A+T+LN L K ++ EE + + +R ++ +
Sbjct: 770 YWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENEDADQGKDPMRRSLSTADG 829
Query: 789 GESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQG 848
GE GR S + EA G K+GM+LPF P +++FD+V Y VDMP EM+ QG
Sbjct: 830 NRRGEVAMGRMSRDSA---AEASGGAGNKKGMVLPFTPLAMSFDDVKYFVDMPGEMRDQG 886
Query: 849 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908
V E +L LL G++GAFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI G++ ISG+PK
Sbjct: 887 VTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRISGFPKV 946
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
QETFARISGYCEQ DIHSP VTV ESL++SA+LRLP EV + + MF+++VMELVEL L
Sbjct: 947 QETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSL 1006
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
S+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNTVD
Sbjct: 1007 RDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVD 1066
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1088
TGRTVVCTIHQP IDIF+AFDEL LMKRGGQ IY GPLG++S +++ YFE+ PGV KI +
Sbjct: 1067 TGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPE 1126
Query: 1089 GYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQY 1148
YNPATWMLE ++ + E+ L VDF +++ S L++RNKAL++ELS P G+ DLYF TQ+
Sbjct: 1127 KYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQF 1186
Query: 1149 SQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNA 1208
SQ+ + QF +CLWKQ W+YWR+P Y VRF FT ++L+G++FW +G + DL
Sbjct: 1187 SQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMV 1246
Query: 1209 MGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQS 1268
+G+++ AIIF+G+ CS+VQP+V+VERTVFYRE+AAGMYS +P+A++Q E+PY+ +Q+
Sbjct: 1247 IGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPYAISQVTCELPYVLIQT 1306
Query: 1269 VVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYG 1328
V Y +IVYAM+G++W AEKF W+ F Y + L +T+YGM+TV++TPN +A+I ++ FYG
Sbjct: 1307 VYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYG 1366
Query: 1329 IWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME--NGE---TVKH 1383
I+ LF GF IPRP+IP WW WYYW PVAWT+YGLI SQ+GDVE +++ G TVK
Sbjct: 1367 IFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVETRIQVLGGAPDLTVKQ 1426
Query: 1384 FLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
++ D++GF+ DF+G VA VL F F F+FA I+ LNFQ R
Sbjct: 1427 YIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2278 (807.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 446/765 (58%), Positives = 543/765 (70%)
Query: 671 EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNS-----YESIGVQVLKSRGFF 725
+DI W W Y+ SPM Y Q A+V NEFL W +PN+ +++G +LKSRGFF
Sbjct: 710 DDIPSWLTWCYYTSPMMYGQTALVINEFLDERWG--SPNNDTRINAKTVGEVLLKSRGFF 767
Query: 726 AHAYWYWXXXXXXXXXXXXXXXXXTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQL 785
YW+W +A+ +LN L +A E +K +G
Sbjct: 768 TEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKH----KG---- 819
Query: 786 SARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMK 845
S G G S++ + SH K+GM+LPF+P SL F+ V Y VDMP EMK
Sbjct: 820 SHSGTGG-----------SVVELTSTSSHGPKKGMVLPFQPLSLAFNNVNYYVDMPAEMK 868
Query: 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905
QGV D+L LL + GAFRPGVLTAL+GVSGAGKTTLMDVL+GRKTGGY+ G+I ISGY
Sbjct: 869 AQGVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGY 928
Query: 906 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
PK Q TFAR+SGYCEQNDIHSP VTVYESL+YSAWLRL ++D++TR+MF+EEVMELVEL
Sbjct: 929 PKNQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVEL 988
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
KPL S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN
Sbjct: 989 KPLRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1048
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEK 1085
TVDTGRTVVCTIHQP IDIF++FDEL LMKRGGQ IY G LG HS +L+ YFEAI GV K
Sbjct: 1049 TVDTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPK 1108
Query: 1086 IKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFP 1145
IKDGYNPATWML+VT S E + VDF IF S + RRN+ LI+ELS P PGS DLYF
Sbjct: 1109 IKDGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFR 1168
Query: 1146 TQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDL 1205
T+Y+Q TQ AC WK +WS WR PQY A+RF T I VL G LFW G+K K QDL
Sbjct: 1169 TKYAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDL 1228
Query: 1206 FNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIF 1265
N G+M+ A++FLG ++VQP V++ERTVFYREKAAGMYS +P+A++Q +EI Y
Sbjct: 1229 NNFFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNT 1288
Query: 1266 VQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTL 1325
+Q+ VY +I+Y+M+GYDWT KF W++++M + FT YGM+ VA+TPN+ IA I +
Sbjct: 1289 IQTGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSF 1348
Query: 1326 FYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMEN---GE-TV 1381
F W LF GF+IPRP+IP+WWRWYYWA+PVAWTLYG+I SQ GD + + G+ ++
Sbjct: 1349 FLSFWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHITGVGDMSL 1408
Query: 1382 KHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
K L++ FGF +DFL +VA V ++ +F F FA GIK LNFQRR
Sbjct: 1409 KTLLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2178 (771.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 410/644 (63%), Positives = 502/644 (77%)
Query: 790 ESGEDIS-GRNSSSK-SLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQ 847
E G+D G N ++ S++ + + KRGM+LPF+P SL F+ V Y VDMP EMK Q
Sbjct: 812 EEGKDKQKGENRGTEGSVVELNSSSNKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQ 871
Query: 848 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907
GV D+L LL + GAFRPG+LTAL+GVSGAGKTTLMDVL+GRKTGGYI G+I+ISGYPK
Sbjct: 872 GVEGDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPK 931
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
Q TFAR+SGYCEQNDIHSP VTVYESL+YSAWLRL ++D +TR++F+EEVMELVELKP
Sbjct: 932 NQTTFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKP 991
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
L S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 992 LRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1051
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIK 1087
DTGRTVVCTIHQP IDIF++FDEL LMKRGGQ IY G LG HS +L+ YFEA+ GV KI
Sbjct: 1052 DTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKIN 1111
Query: 1088 DGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQ 1147
DGYNPATWML+VT S E + +DF IF S LYRRN+ LI++LS P PGSKD+YF T+
Sbjct: 1112 DGYNPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTK 1171
Query: 1148 YSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFN 1207
Y+QS TQ AC WKQ+WSYWR+PQY A+RF T I VL G +FW +G+KT QDL N
Sbjct: 1172 YAQSFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNN 1231
Query: 1208 AMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQ 1267
G+M+ A++FLG ++VQP +++ERTVFYREKAAGMYS +P+A++Q +EI Y +Q
Sbjct: 1232 FFGAMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQ 1291
Query: 1268 SVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFY 1327
+ VY +I+Y+M+G +WT KF W++++M + + FT YGM+ +A+TPN+ IA I + F
Sbjct: 1292 TGVYTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFL 1351
Query: 1328 GIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMEN----GET-VK 1382
+W LF GF+IPRP+IP+WWRWYYWA PVAWTLYGLI SQ GD +D M + G+ +K
Sbjct: 1352 SLWNLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGD-KDSMVHISGIGDIDLK 1410
Query: 1383 HFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
L++ FGF+HDFL +VA V ++ LF FVFA GIK LNFQRR
Sbjct: 1411 TLLKEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2115 (749.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 393/651 (60%), Positives = 501/651 (76%)
Query: 781 GTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDM 840
G Q E E+ G+ S+K TE + KK GM+LPF P +++FD+V Y VDM
Sbjct: 796 GKAQAILPKEEDEEAKGKAGSNKE---TEMESVSAKK-GMVLPFTPLAMSFDDVKYFVDM 851
Query: 841 PQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNI 900
P EM+ QGV E +L LL G++ AFRPGVLTALMGVSGAGKTTLMDVL+GRKTGGYI G++
Sbjct: 852 PAEMREQGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDV 911
Query: 901 TISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
+SG+PKKQETFARISGYCEQ DIHSP VTV ESL++SA+LRL EV E + MF+++VM
Sbjct: 912 RVSGFPKKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVM 971
Query: 961 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
ELVEL L ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM
Sbjct: 972 ELVELVDLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1031
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAI 1080
R VRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGG IY GPLGR+S +++ YFE+
Sbjct: 1032 RAVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESF 1091
Query: 1081 PGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSK 1140
PGV KI + YNPATWMLE ++ + E+ LGVDF ++++ S L +RNKAL++ELS P G+
Sbjct: 1092 PGVPKIPEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGAT 1151
Query: 1141 DLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTR 1200
DLYF TQ+SQ+ + QF +CLWKQ W+YWR+P Y VRF FT ++++GS+FW +G K
Sbjct: 1152 DLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRS 1211
Query: 1201 KSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIE 1260
QDL +G+++ A++F+G+ CS+VQP+V+VERTVFYREKAAGMYS +P+A++Q E
Sbjct: 1212 NVQDLTMVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCE 1271
Query: 1261 IPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAA 1320
+PY+ +Q+ Y +I+Y+M+G++W A KF W+ F Y + L +T+YGM+TV++TPN +A+
Sbjct: 1272 LPYVLIQTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVAS 1331
Query: 1321 IVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME---- 1376
I ++ FYGI+ LF GF IPRP+IP WW WYYW PVAWT+YGLI SQ+GDVE +
Sbjct: 1332 IFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGG 1391
Query: 1377 -NGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
G TVK +++D +GF+ D++G VAGVL F F F+FA IK LNFQ R
Sbjct: 1392 APGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2094 (742.2 bits), Expect = 0., Sum P(3) = 0.
Identities = 389/615 (63%), Positives = 488/615 (79%)
Query: 817 KRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVS 876
KRGM+LPF P +++FD V Y VDMP+EMK QGV +DKL LL ++G FRPGVLTALMGVS
Sbjct: 802 KRGMVLPFTPLTMSFDNVNYYVDMPKEMKEQGVSKDKLQLLKEVTGVFRPGVLTALMGVS 861
Query: 877 GAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936
GAGKTTLMDVL+GRKTGGYI G+I ISG+PK+QETFARISGYCEQNDIHSP VTV ESL+
Sbjct: 862 GAGKTTLMDVLAGRKTGGYIEGDIRISGFPKRQETFARISGYCEQNDIHSPQVTVKESLI 921
Query: 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV 996
YSA+LRLP EV + F++EVMELVEL+ L ++VGLPG++GLSTEQRKRLTIAVELV
Sbjct: 922 YSAFLRLPKEVTKYEKMRFVDEVMELVELESLKDAVVGLPGITGLSTEQRKRLTIAVELV 981
Query: 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056
ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL L+KR
Sbjct: 982 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1041
Query: 1057 GGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIF 1116
GGQ IY GPLG++S ++I YF+AI GV KIK+ YNPATWMLEV++ + E L +DF + +
Sbjct: 1042 GGQVIYAGPLGQNSHKIIEYFQAIHGVPKIKEKYNPATWMLEVSSMAAEAKLEIDFAEHY 1101
Query: 1117 RCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAV 1176
+ S LY++NK L++ELS P G+ DLYF T++SQS QF +CLWKQ +YWR P Y
Sbjct: 1102 KTSSLYQQNKNLVKELSTPPQGASDLYFSTRFSQSLLGQFKSCLWKQWITYWRTPDYNLA 1161
Query: 1177 RFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERT 1236
RFFFT AV+LGS+FW +G+K + DL +G+M+ A++F+G+ SSVQP+++VER+
Sbjct: 1162 RFFFTLAAAVMLGSIFWKVGTKRENANDLTKVIGAMYAAVLFVGVNNSSSVQPLIAVERS 1221
Query: 1237 VFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMY 1296
VFYRE+AA MYS LP+ALAQ + EIPY+ +Q+ Y +I+YAMM ++WT KF W++F +
Sbjct: 1222 VFYRERAAEMYSALPYALAQVVCEIPYVLIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSF 1281
Query: 1297 ITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPV 1356
++ L FT+YGM+TVA+TPN +AA+ + FYG++ LF GFVIPRPRIP WW WYYW PV
Sbjct: 1282 MSFLYFTYYGMMTVALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPV 1341
Query: 1357 AWTLYGLIASQFGDVEDQ-----MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFG 1411
AWT+YGLI SQ+GDVED M N T+K ++ +++G+ DF+ +A VL F F
Sbjct: 1342 AWTVYGLIVSQYGDVEDTIKVPGMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFA 1401
Query: 1412 FVFALGIKQLNFQRR 1426
F+FA GI+ LNFQ+R
Sbjct: 1402 FMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 0., Sum P(3) = 0.
Identities = 375/629 (59%), Positives = 473/629 (75%)
Query: 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGL 860
+ ++ ++ +A +K+GMILPF+P ++TF V Y VDMP+EM+ QGV E +L LL+ +
Sbjct: 798 NEETALVADANQVISEKKGMILPFKPLTMTFHNVNYYVDMPKEMRSQGVPETRLQLLSNV 857
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE 920
SG F PGVLTAL+G SGAGKTTLMDVL+GRKTGGY G+I ISG+PK+Q+TFARISGY E
Sbjct: 858 SGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGGYTEGDIRISGHPKEQQTFARISGYVE 917
Query: 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980
QNDIHSP VTV ESL +SA LRLP E+ E +K F+E+VM LVEL L +LVGLPG +G
Sbjct: 918 QNDIHSPQVTVEESLWFSASLRLPKEITKEQKKEFVEQVMRLVELDTLRYALVGLPGTTG 977
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 978 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1037
Query: 1041 GIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVT 1100
IDIF+AFDEL LMKRGGQ IY G LG HS L+ YF+ I GV I GYNPATWMLEVT
Sbjct: 1038 SIDIFEAFDELLLMKRGGQVIYGGKLGTHSQVLVDYFQGINGVPPISSGYNPATWMLEVT 1097
Query: 1101 ASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACL 1160
+ E ++F D+++ S+ +R +A I++LS P GS+ + F ++YSQ+ +QF+ CL
Sbjct: 1098 TPALEEKYNMEFADLYKKSDQFREVEANIKQLSVPPEGSEPISFTSRYSQNQLSQFLLCL 1157
Query: 1161 WKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLG 1220
WKQ+ YWR+P+Y VR FT A +LG++FWD+GSK SQDL MG++++A +FLG
Sbjct: 1158 WKQNLVYWRSPEYNLVRLVFTTIAAFILGTVFWDIGSKRTSSQDLITVMGALYSACLFLG 1217
Query: 1221 LQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMG 1280
+ SSVQP+VS+ERTVFYREKAAGMY+ +P+A AQ ++EIPYI Q+++Y VI Y +G
Sbjct: 1218 VSNASSVQPIVSIERTVFYREKAAGMYAPIPYAAAQGLVEIPYILTQTILYGVITYFTIG 1277
Query: 1281 YDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPR 1340
++ T KF Y FM++T FTFYGM+ V +TPN H+AA++S+ FY +W L GF++ +
Sbjct: 1278 FERTFSKFVLYLVFMFLTFTYFTFYGMMAVGLTPNQHLAAVISSAFYSLWNLLSGFLVQK 1337
Query: 1341 PRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQMENG---ETVKHFLRDYFGFKHDFLG 1397
P IPVWW W+Y+ PVAWTL G+I SQ GDVE + TVK F+ YFG+K + +G
Sbjct: 1338 PLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPLFHGTVKEFIEYYFGYKPNMIG 1397
Query: 1398 LVAGVLTCFVALFGFVFALGIKQLNFQRR 1426
+ A VL F ALF FAL +K LNFQRR
Sbjct: 1398 VSAAVLVGFCALFFSAFALSVKYLNFQRR 1426
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5811 | 0.9803 | 0.9568 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6802 | 0.9880 | 0.9670 | yes | no |
| Q9M9E1 | AB40G_ARATH | No assigned EC number | 0.6747 | 0.9824 | 0.9845 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6603 | 0.9845 | 0.9743 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6930 | 0.9866 | 0.9811 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6842 | 0.9761 | 0.9693 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6795 | 0.9880 | 0.9670 | N/A | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5211 | 0.9775 | 0.9633 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | PtrPDR12 | pleiotropic drug resistance, ABC transporter family protein (1424 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1426 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-97 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 4e-97 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-70 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-62 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-55 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 5e-54 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-45 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-44 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-43 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-40 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 9e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-37 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 6e-36 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-31 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 9e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-27 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 6e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 8e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-23 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-22 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-20 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-20 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-20 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 9e-20 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-19 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-18 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-18 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-18 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-18 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-18 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 6e-18 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-17 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-17 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-16 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-16 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-16 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-16 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-16 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-16 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-16 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-15 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-15 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-15 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-15 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 6e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-15 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-14 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-14 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-14 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-14 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-14 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-14 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-14 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 7e-14 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-14 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-14 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-14 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-13 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-13 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 2e-13 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 2e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-13 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-13 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-13 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-13 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 8e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 9e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 9e-13 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-12 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-12 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-12 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-12 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 4e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-12 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-12 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-12 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 7e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 7e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 7e-12 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 8e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-12 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 8e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-11 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 1e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-11 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-11 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-11 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-11 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-11 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-11 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-11 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-11 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-11 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 4e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 5e-11 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-11 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-11 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 7e-11 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 7e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 8e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 8e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-11 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 8e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-10 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-10 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-10 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-10 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-10 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-10 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-10 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-10 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 4e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 6e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 6e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 6e-10 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 7e-10 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-10 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 9e-10 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-09 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-09 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-09 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-09 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-09 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-09 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 3e-09 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-09 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 4e-09 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-09 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-09 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-09 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 7e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-09 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-08 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-08 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-08 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-08 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-08 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-08 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 3e-08 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 4e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-08 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 5e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 5e-08 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-08 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-08 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 6e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 8e-08 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 9e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 9e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-07 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-07 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-07 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 3e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-07 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-07 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-07 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 4e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 4e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 4e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 4e-07 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 5e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 5e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-07 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 5e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 5e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 7e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 8e-07 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-07 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-07 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-06 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-06 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-06 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-06 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-06 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 2e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-06 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-06 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-06 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-06 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-06 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 4e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 5e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-06 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-06 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-06 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 7e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 7e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-06 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-06 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-05 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-05 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 1e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 1e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-05 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-05 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 2e-05 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-05 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-05 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 2e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-05 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 3e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 3e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 3e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 5e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 6e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 6e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 6e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-05 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 7e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 7e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 8e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 8e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-04 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 1e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 1e-04 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-04 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-04 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-04 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 3e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 5e-04 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 5e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 7e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 7e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-04 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 0.001 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.001 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.001 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 0.001 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 0.001 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.001 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.001 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.001 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.001 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.002 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.002 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.002 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.002 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.002 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 0.002 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 0.002 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.003 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.003 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.003 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.003 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.004 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.004 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 0.004 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 2041 bits (5289), Expect = 0.0
Identities = 862/1450 (59%), Positives = 1084/1450 (74%), Gaps = 48/1450 (3%)
Query: 16 GNISRWRTSSVGAFSKSLREEDDEEALKWAALEKLPTYNRLRKGLLTT--------SRGE 67
G+ SR RTSSV ++DEEALKWAA+EKLPTY+RLR ++ + ++
Sbjct: 30 GSQSRRRTSSV---------DEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLL 80
Query: 68 AFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVE 127
EVDV+ L RQ+ I+ + KV E DNEKFL K ++RIDRVGI LP VEVR+EHL VE
Sbjct: 81 HKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVE 140
Query: 128 GEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPP 187
+ Y+ S+ALP+ + E LGI ++K LTILKD SGIIKP RMTLLLGPP
Sbjct: 141 ADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPP 200
Query: 188 ASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247
+SGKTTLLLALAGKLD SLKVSG +TYNG+ + EFVP +T+AYISQ+D H+G MTV+ETL
Sbjct: 201 SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETL 260
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
FSARCQGVG+RY+LL+ELARRE +AGI P+ ++D++MKA A EG ++++ITDY LK+LG
Sbjct: 261 DFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILG 320
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLK 367
L++C DT+VGDEMIRGISGG++KRVTTGEM+VGP LFMDEISTGLDSSTT+QIV CL+
Sbjct: 321 LDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQ 380
Query: 368 QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRK 427
Q VH+ T ++SLLQPAPET+DLFDDIILLS+GQIVYQGPR+ +LEFFES GFKCP+RK
Sbjct: 381 QIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERK 440
Query: 428 GVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKS 487
G ADFLQEVTS+KDQ+QYW + KPYR+++V EFAE F+SFHVG ++ +EL PFDKS+S
Sbjct: 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQS 500
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
H+AAL Y K ELLK C +E LLMKRN+FVY+FK QI VA T+FLRT+MH
Sbjct: 501 HKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMH 560
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ DG +Y GAL F+ + MFNG AE+++ I +LPVFYKQRD F PPW + +P+++L
Sbjct: 561 TRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLL 620
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
IPIS +E VWV +TYY IG P A RFFKQ LL + QMA+ +FRLIA+ R+M++A
Sbjct: 621 GIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIA 680
Query: 668 NT------------------FEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW-KKFTP 708
NT +I WW+WAYW SP+SY NA+ NE W K
Sbjct: 681 NTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMAS 740
Query: 709 NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITE 768
++ +G VL F WYW+G+GAL GF +LFN+ FT+A+T+LN L K +A+I+E
Sbjct: 741 DNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISE 800
Query: 769 ES--ESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILT-----EAQGSHPKKRGMI 821
E+ E +++ I ++ + + E R S+ + L EA KRGM+
Sbjct: 801 ETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMV 860
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
LPF P +++FD+V Y VDMP EMK QGV ED+L LL ++GAFRPGVLTALMGVSGAGKT
Sbjct: 861 LPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKT 920
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWL 941
TLMDVL+GRKTGGYI G+I ISG+PKKQETFARISGYCEQNDIHSP VTV ESL+YSA+L
Sbjct: 921 TLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFL 980
Query: 942 RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
RLP EV E + MF++EVMELVEL L ++VGLPGV+GLSTEQRKRLTIAVELVANPSI
Sbjct: 981 RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP IDIF+AFDEL LMKRGGQ I
Sbjct: 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1100
Query: 1062 YVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSEL 1121
Y GPLGR+S ++I YFEAIPGV KIK+ YNPATWMLEV++ + EV LG+DF + ++ S L
Sbjct: 1101 YSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSL 1160
Query: 1122 YRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFT 1181
Y+RNKAL++ELS P PG+ DLYF TQYSQS + QF +CLWKQ W+YWR+P Y VRFFFT
Sbjct: 1161 YQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFT 1220
Query: 1182 AFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYRE 1241
A+++G++FW +G+K + DL +G+M+ A++F+G+ CS+VQP+V+VERTVFYRE
Sbjct: 1221 LAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRE 1280
Query: 1242 KAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLL 1301
+AAGMYS LP+A+AQ + EIPY+ +Q+ Y +IVYAM+ ++WTA KF W++F + + L
Sbjct: 1281 RAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLY 1340
Query: 1302 FTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY 1361
FT+YGM+TV++TPN +AAI + FYG++ LF GF IPRP+IP WW WYYW PVAWT+Y
Sbjct: 1341 FTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVY 1400
Query: 1362 GLIASQFGDVEDQ-----MENGETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFAL 1416
GLI SQ+GDVED T+K +++D++G+ DF+G VA VL F F F+FA
Sbjct: 1401 GLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAF 1460
Query: 1417 GIKQLNFQRR 1426
I+ LNFQ R
Sbjct: 1461 CIRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1148 bits (2972), Expect = 0.0
Identities = 410/1458 (28%), Positives = 664/1458 (45%), Gaps = 194/1458 (13%)
Query: 93 EVDNEKFLLKLKSRIDRVGIDLP--KVEVRYEHLNVEGEAYLASKALPSFT----KFYTT 146
E + + ++ + ID I K+ V Y++L+ G A S P+F K T
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVA-ADSDYQPTFPNALLKILTR 60
Query: 147 VFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F + K ILK + G+IKPG +T++LG P SG +TLL +A D
Sbjct: 61 GFRKLKK-----FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFH 115
Query: 207 K-VSGRVTYNGHDMGEFVPERTA--AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
V G +TY+G E Y ++ D H +TV ETL F+ARC+ +R + +
Sbjct: 116 IGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGV 175
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+ ++ I D Y+ GL +T VG++ +RG
Sbjct: 176 SREEYAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRG 209
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGGERKRV+ E +G A D + GLDS+T + + LK +I T ++++ Q
Sbjct: 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQ 269
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQK 443
+ + Y+LFD +I+L +G +Y GP + ++FE MGFKCP R+ ADFL +TS ++
Sbjct: 270 CSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ER 328
Query: 444 QYWTHKEKP-YRFVTVEEFAEAFQSFHVGQKISDELRTPFDK---------------SKS 487
Q EK R T +EF +++ ++ E+ D+ +K
Sbjct: 329 QIKPGYEKKVPR--TPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQ 386
Query: 488 HRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMH 547
+ + Y +K C++R L MK N +F + +AL ++F
Sbjct: 387 SKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK- 445
Query: 548 KHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWIL 607
+ +D GALFFA F+ L EI+ P+ K R + + P A AI S I
Sbjct: 446 --NTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIIS 503
Query: 608 KIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA 667
+IP +E V+ + Y+++ AGRFF L+ S LFR I A +++ A
Sbjct: 504 EIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEA 563
Query: 668 NTFE------------------DIKKWWKWAYWCSPMSYAQNAIVANEFLGYSW--KKFT 707
T + W KW Y+ +P++YA +++ NEF G + ++
Sbjct: 564 MTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYV 623
Query: 708 PNS--YESIGV--QVLKSRG------------FFAHAY-----WYWLGLGALFGFILLFN 746
P+ Y+++GV +V G + ++ W G + GF + F
Sbjct: 624 PSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFF 683
Query: 747 LGFTMAITFLNQLE-KPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSL 805
+ + F + K ++ + G S+S
Sbjct: 684 FVYILLTEFNKGAKQKGEILVFRRGSLKRAKKA------------------GETSASNKN 725
Query: 806 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKL-----------QGVLEDKL 854
+ + G +L + D+V DM +E + ++K
Sbjct: 726 DI---------EAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKR 776
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
V+LN + G +PG LTALMG SGAGKTTL++VL+ R T G ITG + +F R
Sbjct: 777 VILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQR 836
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
GY +Q D+H P TV ESL +SA+LR P V + ++EEV++L+E++ ++VG
Sbjct: 837 SIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVG 896
Query: 975 LPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
+PG GL+ EQRKRLTI VELVA P ++F+DEPTSGLD++ A + + +R D G+ +
Sbjct: 897 VPG-EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAI 955
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPA 1093
+CTIHQP +F+ FD L L+++GGQ +Y G LG +S +I+YFE G K + NPA
Sbjct: 956 LCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPA 1014
Query: 1094 TWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPT---QYSQ 1150
WMLEV ++ D+++++R S Y+ K ++ L ++D P +Y+
Sbjct: 1015 EWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAA 1074
Query: 1151 SAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMG 1210
S + QF LW+ YWR P Y +FF T F A+ +G F+ +G Q L N M
Sbjct: 1075 SLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMF 1131
Query: 1211 SMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVV 1270
++F A + + P V+ RE+ + +S L + AQ +EIPY V +
Sbjct: 1132 AVFMATVLFNPLIQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTI 1191
Query: 1271 YCVIVYAMMGYDWTA-------EKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVS 1323
+ I Y +G+ W A E+ ++ + L F+ G + ++ PN AA+++
Sbjct: 1192 FFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLA 1251
Query: 1324 TLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME------- 1376
+L + + FCG + P R+P +W + Y +P + + L+++ DV +
Sbjct: 1252 SLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTF 1311
Query: 1377 ---NGETVKHFLRDY---------------------FGFKHDFLGLVAGVLTCFVALFG- 1411
+G+T +++ Y + + +DFL ++ + FG
Sbjct: 1312 NPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGI 1371
Query: 1412 ---FVFALGIKQLNFQRR 1426
F+F I + F
Sbjct: 1372 FIAFIFFNIIATVFFYWL 1389
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 2e-97
Identities = 109/239 (45%), Positives = 140/239 (58%), Gaps = 47/239 (19%)
Query: 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
LT+ + Y+V + K LLN +SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 886 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945
VL+GRKT G ITG I I+G P + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
EPTSGLD++AA ++R ++ D+G+ ++CTIHQP IF+ FD L L+KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 325 bits (835), Expect = 4e-97
Identities = 162/536 (30%), Positives = 267/536 (49%), Gaps = 36/536 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYPKKQETFAR 914
LL +SG +PG L A+MG SGAGKTTLM+ L+ R G +G++ ++G P +
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRA 99
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
IS Y +Q+D+ P +TV E L++ A LR+P V + ++ ++EV++ + L+ + +G
Sbjct: 100 ISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIG 159
Query: 975 LPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G+T+
Sbjct: 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTI 219
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPA 1093
+CTIHQP ++F+ FD++ LM G+ Y+G + S + YNPA
Sbjct: 220 ICTIHQPSSELFELFDKIILMA-EGRVAYLGS-PDQAVPFFSDLGH-----PCPENYNPA 272
Query: 1094 TWMLEV-------TASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPG---SKDLY 1143
+ ++V S+E + D F S++ R S G +
Sbjct: 273 DFYVQVLAVIPGSENESRERIEKI--CDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330
Query: 1144 FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQ 1203
Y+ S +TQF A L + S R+P VR T A+L+G ++ G + Q
Sbjct: 331 EGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQ 390
Query: 1204 DLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPY 1263
N G++F + + Q V V + E VF RE +G+Y + LA+ + E+P
Sbjct: 391 ---NINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 1264 IFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLF---TFYGMLTVAITPNHHIAA 1320
+ ++ I Y M+G + + F+++ L+ T +G L + +A
Sbjct: 448 FIILPALFTSITYWMIGLRSG---ATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMAL 504
Query: 1321 IVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLY---GLIASQFGDVED 1373
V F + LF GF I IPV+++W + ++W Y GL+ +Q+ DV++
Sbjct: 505 TVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDN 557
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 233 bits (596), Expect = 3e-70
Identities = 92/237 (38%), Positives = 138/237 (58%), Gaps = 45/237 (18%)
Query: 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL 887
+L+F + +V + LL +SG +PG LTA+MG SGAGK+TL++ L
Sbjct: 3 TLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNAL 55
Query: 888 SGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV 947
+GR+TG ++G + I+G P + +F +I GY Q+DI P +TV E+L+++A LR
Sbjct: 56 AGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----- 110
Query: 948 DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007
GLS +RKR++IA+ELV+NPS++F+DEP
Sbjct: 111 --------------------------------GLSGGERKRVSIALELVSNPSLLFLDEP 138
Query: 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
TSGLD+ +A VM +R DTGRT++C+IHQP +IF+ FD+L L+ + G+ IY G
Sbjct: 139 TSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 2e-62
Identities = 157/644 (24%), Positives = 272/644 (42%), Gaps = 88/644 (13%)
Query: 146 TVFEDIFNYLGILPSRKKH-LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204
++ + + L R++ +LK+VSG+ KPG + ++G +GKTTL+ ALA +
Sbjct: 18 GSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPK 77
Query: 205 SLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+K SG V NG + +AY+ Q D I +TVRE L F A +
Sbjct: 78 GVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAH-------LRMPR 130
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE-MIRG 323
+ ++E + V+ LGL CA+T +G ++G
Sbjct: 131 RVTKKEKRERVD-------------------EVLQA-----LGLRKCANTRIGVPGRVKG 166
Query: 324 ISGGERKRVTTG-EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL 382
+SGGERKR+ E++ P L LF DE ++GLDS + +V LK + T + ++
Sbjct: 167 LSGGERKRLAFASELLTDPPL-LFCDEPTSGLDSFMAYSVVQVLK-GLAQKGKTIICTIH 224
Query: 383 QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQ 442
QP+ E ++LFD IIL+++G++ Y G + + FF +G CP+ ADF +V +
Sbjct: 225 QPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG 284
Query: 443 KQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKR 502
+ + +E+ ++F +G+ + K+ L +
Sbjct: 285 SE-----NESRE--RIEKICDSFAVSDIGRDMLVNTNLWSGKAGG----LVKDSENMEGI 333
Query: 503 ELLKTCISRELLLMKRNSFVYIFK--------LTQISSVALAFMTLFLRTKMHKHSLTDG 554
+ ++ L+KR S++ + + L Q A+ ++L LT
Sbjct: 334 GYNASWWTQFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQG-----LTQK 387
Query: 555 GIYA--GALF-FATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPI 611
G+ GALF F T M N I++ A+LPVF ++ + AY + I ++P+
Sbjct: 388 GVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPL 447
Query: 612 SFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF- 670
+ A++ +TY++IG A F L V +A++ LI+ S +A T
Sbjct: 448 FIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVG 507
Query: 671 -----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYE- 712
+ I ++KW + S Y ++ N++ + T +
Sbjct: 508 PPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTG 567
Query: 713 ---SIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAI 753
S G +L++ F +L L L I F L A+
Sbjct: 568 PCPSSGEVILETLSFRNAD--LYLDLIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 192 bits (491), Expect = 1e-55
Identities = 83/210 (39%), Positives = 124/210 (59%), Gaps = 6/210 (2%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT-GNITISGYPKKQETFAR 914
+LN +S G + A++G SG+GKTTL+D +SGR GG T G I +G P+K + F +
Sbjct: 22 ILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQK 81
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
Y Q+DI P +TV E+L Y+A LRLP + RK +E V L+ L + +G
Sbjct: 82 CVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK----RVEDVLLRDLALTRIG 137
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R V+
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVI 197
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
TIHQP D+F FD + L+ G +Y G
Sbjct: 198 LTIHQPRSDLFRLFDRILLLSSGEI-VYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 5e-54
Identities = 59/216 (27%), Positives = 108/216 (50%), Gaps = 7/216 (3%)
Query: 1154 TQFMACLWKQHWSYWRNPQYT-AVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSM 1212
TQ A L ++ WR+P R +A++ G++F ++ + S N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDT----SLGGLNRPGLL 56
Query: 1213 FTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYC 1272
F +I+F + + PV ER V RE A+ +YS + LA+ ++E+P +Q++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1273 VIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYL 1332
+IVY M+G + +F + + +T L + G+ A+ P+ A+ + L L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1333 FCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQF 1368
GF IP +P W +W Y+ NP+ + + L A++F
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (439), Expect = 9e-45
Identities = 128/493 (25%), Positives = 232/493 (47%), Gaps = 57/493 (11%)
Query: 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLV-----------------LLNGLSGAFRPGV 868
P +L F +V Y V + MK +G +++ +LNG++G PG
Sbjct: 37 PITLKFMDVCYRVKF-ENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGE 95
Query: 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
+ A++G SG+GK+TL++ L+GR G TG I + ++ R G+ Q+DI P
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT-GFVTQDDILYPH 154
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988
+TV E+L++ + LRLP + + + + E V+ + L +++G + G+S +RKR
Sbjct: 155 LTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKR 214
Query: 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1048
++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V ++HQP ++ F
Sbjct: 215 VSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274
Query: 1049 DELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVT-------- 1100
D + ++ G+ ++ G ++YFE++ NPA ++L++
Sbjct: 275 DSVLVLSE-GRCLFFGKGS----DAMAYFESVGFSPSFP--MNPADFLLDLANGVCQTDG 327
Query: 1101 -------------ASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQ 1147
+S L S + N + S S D
Sbjct: 328 VSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSD----RI 383
Query: 1148 YSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFN 1207
+ F QF + L ++ ++ + +R F A+L G ++W S R QD
Sbjct: 384 SISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWH--SDFRDVQD--- 437
Query: 1208 AMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQ 1267
+G +F IF G+ + V ER +F +E+A+GMY+ + +A+ + ++P +
Sbjct: 438 RLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL 497
Query: 1268 SVVYCVIVYAMMG 1280
++ + Y M G
Sbjct: 498 PTIFLTVTYWMAG 510
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 6e-44
Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 19/245 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP--KKQ 909
L+G+S PG + L+G +GAGKTTL+ +L+G +G I + GY K+
Sbjct: 16 GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEP 73
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R GY Q P +TV E+L + A L + ++E R IEE++EL L+
Sbjct: 74 AKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKA 130
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1028
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R +
Sbjct: 131 NKKV-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE 185
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1088
G T++ + H + + D + ++ G I G +L F +E +
Sbjct: 186 GGVTILLSTHILE-EAEELCDRVIILNDGKI-IAEGTPE----ELKEKFGGKGVIELEPE 239
Query: 1089 GYNPA 1093
A
Sbjct: 240 RLELA 244
|
Length = 293 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 4e-43
Identities = 76/246 (30%), Positives = 126/246 (51%), Gaps = 38/246 (15%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
K+ IL DVS ++ G++ +LG SGKTTLL A++G+++ SG++ +NG
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
++ AY+ Q D + +TVRETL ++A + R++ I+ D
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILRL------------PRKSSDAIRKKRVED 125
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EMMVGP 341
V ++ A T +G +++GISGGER+RV+ +++ P
Sbjct: 126 VLLRD-----------------------LALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ L +DE ++GLDS T +V+ L Q N ++++ QP + + LFD I+LLS G
Sbjct: 163 KV-LILDEPTSGLDSFTALNLVSTLSQLARRNR-IVILTIHQPRSDLFRLFDRILLLSSG 220
Query: 402 QIVYQG 407
+IVY G
Sbjct: 221 EIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 8e-40
Identities = 40/91 (43%), Positives = 58/91 (63%)
Query: 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGT 376
G+E +RGISGGERKRV+ E +V A L D + GLDSST +I+ C++ + T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 377 AVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+SL Q + E YDLFD +++L +G+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (392), Expect = 9e-39
Identities = 131/489 (26%), Positives = 231/489 (47%), Gaps = 54/489 (11%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
TIL V+G+ PG + +LGP SGK+TLL ALAG++ + +G + N + + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
RT +++Q D +TVRETL F S L L ++E
Sbjct: 141 RTG-FVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQE--------------- 177
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EMMVGPALA 344
K + E +VI++ LGL C +T++G+ IRGISGGERKRV+ EM++ P+L
Sbjct: 178 KILVAE----SVISE-----LGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL- 227
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE ++GLD++ +++V L T V S+ QP+ Y +FD +++LS+G+ +
Sbjct: 228 LILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286
Query: 405 YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEA 464
+ G + +FES+GF ADFL ++ + Q + +EKP + +
Sbjct: 287 FFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPN---VKQSLVAS 343
Query: 465 FQSFHVGQ-KISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKR---NS 520
+ + + K + E+ + + +T+ + + R + T ++ +L++R
Sbjct: 344 YNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKER 403
Query: 521 FVYIFKLTQISSVALAFMTLFLRTKMHKHS-LTDGGIYAGALFFATAMVMFNGLAEISMT 579
F ++ V A + L M HS D G LFF + +F G+ +
Sbjct: 404 KHESFNTLRVFQVIAAALLAGL---MWWHSDFRDVQDRLGLLFF---ISIFWGVFPSFNS 457
Query: 580 IAKLP----VFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGR 635
+ P +F K+R + +Y + + +P+ + +++ +TY++ G P G
Sbjct: 458 VFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGA 517
Query: 636 FFKQYLLFL 644
F L+ L
Sbjct: 518 FLLTLLVLL 526
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 2e-37
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 51/296 (17%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
T L VS ++PG + LLGP +GKTTLL LAG L + SG + G+D+ +
Sbjct: 15 GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVK 71
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ R Y+ Q + E+TVRE L F AR G+
Sbjct: 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---------------------- 109
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+EA + L++ GLE ++ +R +SGG ++R++ ++
Sbjct: 110 ------------KEEAEERIEELLELFGLE-----DKANKKVRTLSGGMKQRLSIALALL 152
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS--LLQPAPETYDLFDDIIL 397
L +DE ++GLD + +I L++ T ++S +L+ E +L D +I+
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE---EAEELCDRVII 209
Query: 398 LSDGQIVYQGPRELVLEFFESMGFKC--PKRKGVADFLQEVTSRKDQKQYWTHKEK 451
L+DG+I+ +G E + E F G P+R +A+ L+ + K +++ E
Sbjct: 210 LNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEELAEILEA 265
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 6e-36
Identities = 57/216 (26%), Positives = 96/216 (44%), Gaps = 26/216 (12%)
Query: 503 ELLKTCISRELLLMKRNSFV-YIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGAL 561
LK + RE L R+ + +++L Q +AL F T+F + G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 562 FFATAMVMFNGLAEISMT-IAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWV 620
FF+ F+ L IS I + V ++ + P AY + ++++PIS L+ +++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 621 FLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF---------- 670
+ Y+++G + RFF L+ L AS L IAA S A+
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 671 --------EDIKKWWKWAYWCSPMSYAQNAIVANEF 698
+ + W +W Y+ +P++YA A+ ANEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 130 bits (328), Expect = 4e-34
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 2/101 (1%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ + ILKD SG++KPG M L+LG P SG +TLL ALA + + ++ V G + YNG
Sbjct: 12 TTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNG 71
Query: 217 HDMGEF--VPERTAAYISQHDNHIGEMTVRETLAFSARCQG 255
EF Y+S+ D H +TVRETL F+ RC+G
Sbjct: 72 IPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 59/219 (26%), Positives = 104/219 (47%), Gaps = 38/219 (17%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKK 908
K+ +L SG +PG + ++G G+G +TL+ L+ R T G + G+I +G P K
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIHYNGIPYK 75
Query: 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ E + Y + D+H P +TV E+L ++ +
Sbjct: 76 EFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------ 111
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
G V G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R
Sbjct: 112 -------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
Query: 1027 VD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
D T +++Q +I+D FD++ ++ G++IY G
Sbjct: 165 ADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 17/186 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA- 913
++ LS G + L+G +GAGKTT + +L+G R T +G I+GY + + A
Sbjct: 18 VDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT----SGTAYINGYSIRTDRKAA 73
Query: 914 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ GYC Q D +TV E L + A L+ P+ K +E ++ ++ L
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKR 130
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+
Sbjct: 131 AR-----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRS 184
Query: 1033 VVCTIH 1038
++ T H
Sbjct: 185 IILTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 9e-29
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
K +LK+VSG KPG +T ++GP +GK+TLL ALAG+ + L VSG V NG + +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
+ Y+ Q D +TVRETL F+A+ +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP--KKQ 909
K L+G+S PG+ L+G +GAGKTTLM +L+ G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSS--GTIRIDGQDVLKQP 67
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ R GY Q P TV E L Y AWL+ + S+ K ++EV+ELV L
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ +G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
R V+ + H D+ +++ ++ +G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLNKG 205
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 5e-27
Identities = 56/214 (26%), Positives = 99/214 (46%), Gaps = 31/214 (14%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---F 912
L+ +S + G ++G +G+GK+TL+ +L+G G +G + + G + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKEL 73
Query: 913 ARISGYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G QN P F TV E + + PE + E R +EE +ELV L+
Sbjct: 74 RRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLEG 126
Query: 968 L----IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L +L G G Q++R+ IA L +P I+ +DEPT+GLD ++ +
Sbjct: 127 LRDRSPFTLSG-----G----QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELL 177
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ G+T++ H + + D + +++ G
Sbjct: 178 KKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-26
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 703 WKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKP 762
W K S E++G VLKSRG F AYWYW+G+GAL GF +LFN+ FT+A+T+LN L K
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 763 RAVI 766
+A++
Sbjct: 61 QAIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 8e-25
Identities = 62/215 (28%), Positives = 99/215 (46%), Gaps = 27/215 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQET 911
+L+ LS + G +T ++G +G+GK+TL+ L+G + G + I+ K+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKE-- 73
Query: 912 FARISGYCEQNDIHSPFVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 966
A+ Y Q+ +TVYE +L + P + D E +EE +EL+ L+
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGLE 129
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1025
L V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 130 HLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ G TVV +H + A D L L+K G
Sbjct: 185 NREKGLTVVMVLHDLNL----AARYADHLILLKDG 215
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 58/211 (27%), Positives = 102/211 (48%), Gaps = 27/211 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S +PG A++G +GAGK+TL+ + G + T +G+I + G P ++E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 915 ISGYCEQN---DIHSPFVTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 966
I GY Q D P ++V + +L + R + D ++E +E V L
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAK----VDEALERVGLS 123
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L +G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R
Sbjct: 124 ELADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL 178
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ H G+ + + FD + L+ R
Sbjct: 179 RREGMTILVVTHDLGL-VLEYFDRVLLLNRT 208
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 65/219 (29%), Positives = 101/219 (46%), Gaps = 32/219 (14%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
K+ L G+S + G A++G SG+GK+TL+++L G R T G + IS +K+
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 910 ETFAR---ISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
R I G+ Q+ + P +T E++ LP + +K E EL+E
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVE------LPLLLAGVPKKERRERAEELLE 126
Query: 965 LKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
VGL S LS Q++R+ IA L +P II DEPT LD+ V
Sbjct: 127 R-------VGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEV 179
Query: 1020 MRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
M +R + G T+V H P ++ + D + ++ G
Sbjct: 180 MELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 94.8 bits (237), Expect = 3e-22
Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 912
L+ +S G + L+G +GAGKTTL+ ++ G + G I + G K+ E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG----EIKVLGKDIKKEPEEV 71
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + H + D + ++ G
Sbjct: 148 ILLSSHIL-EEAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 94.4 bits (236), Expect = 6e-22
Identities = 50/214 (23%), Positives = 82/214 (38%), Gaps = 55/214 (25%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
+L+ LS + G + ++G +GAGK+TL+ L+G + + G I ++ K
Sbjct: 10 GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPK 69
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ AR Y Q +EL+ L L
Sbjct: 70 E--LARKIAYVPQ-------------------------------------ALELLGLAHL 90
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 91 ADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR 145
Query: 1029 -TGRTVVCTIHQPGIDIFDAF---DELFLMKRGG 1058
G+TVV +H + A D + L+K G
Sbjct: 146 ERGKTVVMVLHDLNL----AARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.5 bits (241), Expect = 7e-22
Identities = 56/212 (26%), Positives = 95/212 (44%), Gaps = 25/212 (11%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L +S + G +TAL+G +GAGK+TL+ + G +G I I G P ++
Sbjct: 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRLR 76
Query: 916 SGYCEQNDIHSPF-----VTVYE---SLLYSA--WLRLPPEVDSETRKMFIEEVMELVEL 965
GY Q S +TV + Y W R + D E ++E +E V +
Sbjct: 77 IGYVPQ---KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGM 129
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ L +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 130 EDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE 184
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G+TV+ H G+ + FD + + R
Sbjct: 185 LRQEGKTVLMVTHDLGL-VMAYFDRVICLNRH 215
|
Length = 254 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 76/256 (29%), Positives = 111/256 (43%), Gaps = 52/256 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL D+S I G +T +LGP SGK+TLL LAG L SG V +G D+ P+
Sbjct: 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPK 72
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ AY+ Q + +TV E + G P
Sbjct: 73 ELAKKLAYVPQSPSAPFGLTVYELVLL------------------------GRYP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++ +E I + L++LGLE AD V + +SGGER+RV ++ A
Sbjct: 104 -HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRV-----LIARA 152
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
LA L +DE ++ LD + +++ L+ G V+ +L D +IL
Sbjct: 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARYADHLIL 211
Query: 398 LSDGQIVYQGPRELVL 413
L DG+IV QG E VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 2e-21
Identities = 36/87 (41%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Query: 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+RG+SGGERKRV+ +V LF+DE ++GLDSS+ Q+++ L++ T + S
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGR-TIICS 167
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG 407
+ QP+ E ++LFD ++LLS G+++Y G
Sbjct: 168 IHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 60/215 (27%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L+ LS G + AL G +GAGKTTL +L+G +++ G +I ++G P K +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG----SILLNGKPIKAKERR 70
Query: 914 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK---PLI 969
+ GY Q+ D +V E LL L+ + + + + ++L LK PL
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQAET--VLKDLDLYALKERHPLS 126
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
LS Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 127 -----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ 175
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
G+ V+ H D FL K + + +
Sbjct: 176 GKAVIVITH----------DYEFLAKVCDRVLLLA 200
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 1e-20
Identities = 61/213 (28%), Positives = 100/213 (46%), Gaps = 23/213 (10%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
+ L+ LS PG AL+G SG GKTTL+ +++G R G I ++G P +
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE 70
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ R G Q+ P +TV E++ + LR P+ + R + E++ELV L+ L
Sbjct: 71 R----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGL 123
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-V 1027
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++
Sbjct: 124 LNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR 178
Query: 1028 DTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ G T + H D +A D + +M G
Sbjct: 179 ELGITTIYVTH----DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-20
Identities = 62/218 (28%), Positives = 103/218 (47%), Gaps = 29/218 (13%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--- 907
D L+ L+ + G LTAL+G SGAGK+TL+++L G G I ++G
Sbjct: 331 PDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRDL 388
Query: 908 KQETFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
E + + + QN P++ T+ E++L L P D E I ++
Sbjct: 389 SPEAWRKQISWVSQN----PYLFAGTIRENIL----LARPDASDEE-----IIAALDQAG 435
Query: 965 LKPLIQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L + GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I+
Sbjct: 436 LLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQII 495
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++ ++ +TV+ H+ D DA D + ++ G
Sbjct: 496 LQALQELAK-QKTVLVITHRL-EDAADA-DRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 67/261 (25%), Positives = 108/261 (41%), Gaps = 62/261 (23%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+K + D+S + G + LLG +GKTT L L G+L + SG NG+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSI- 66
Query: 221 EFVPERTAA-----YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGI 275
+R AA Y Q D E+TVRE L F AR +G+
Sbjct: 67 --RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKS---------------- 108
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
E + L+VLGL A+ +SGG +++++
Sbjct: 109 ------------------EIKEEVELLLRVLGLTDKANKRART-----LSGGMKRKLSLA 145
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDL 391
++G L +DE ++GLD ++ I + + + G ++I S+ E L
Sbjct: 146 IALIGGPSVLLLDEPTSGLDPASRRAIWDLIL---EVRKGRSIILTTHSMD----EAEAL 198
Query: 392 FDDIILLSDGQIVYQG-PREL 411
D I ++SDG++ G P+EL
Sbjct: 199 CDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 48/208 (23%), Positives = 80/208 (38%), Gaps = 53/208 (25%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S G + AL+G SG+GK+TL+ ++G G I ++ +
Sbjct: 16 LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLR 75
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G Q+ P +TV E++
Sbjct: 76 RRIGMVFQDFALFPHLTVLENIAL------------------------------------ 99
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRT 1032
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G T
Sbjct: 100 ------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGIT 153
Query: 1033 VVCTIHQPGIDIFDAF---DELFLMKRG 1057
VV H D+ +A D + +++ G
Sbjct: 154 VVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 9e-20
Identities = 38/110 (34%), Positives = 64/110 (58%), Gaps = 5/110 (4%)
Query: 148 FEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLK 207
++++ NY +P + +L ++SG +KPG +T L+G +GKTTLL LAG+ + +
Sbjct: 6 WKNL-NY--TVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV- 61
Query: 208 VSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG 257
++G + NG + + R+ Y+ Q D H +TVRE L FSA +G+
Sbjct: 62 ITGEILINGRPLDKNFQ-RSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 1e-19
Identities = 62/247 (25%), Positives = 100/247 (40%), Gaps = 62/247 (25%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
L D+S IK G L++GP SGK+TLL L G L SG V +G D+ + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL---GPTSGEVLVDGKDLTKLSLKE 72
Query: 226 --RTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + Q+ D+ TV E +AF G+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL-------------------------- 106
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GP 341
+E + L+++GLE D +SGG+++RV ++ P
Sbjct: 107 --------PEEEIEERVEEALELVGLEGLR-----DRSPFTLSGGQKQRVAIAGVLAMDP 153
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLLQPAPETYDLFDDI 395
+ L +DE + GLD + +++ LK+ + G +I LL +L D +
Sbjct: 154 DI-LLLDEPTAGLDPAGRRELLELLKK-LK-AEGKTIIIVTHDLDLL------LELADRV 204
Query: 396 ILLSDGQ 402
I+L DG+
Sbjct: 205 IVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 2e-19
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 19/222 (8%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNIT 901
K+ G+ +K+ L ++ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 902 ISGYPKKQ--ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIE 957
++ +K+ + + G+ QN + P +TV E++ + + RK E
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAG---KSAGRRKRAAE 123
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
E++E++ L+ + S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 124 ELLEVLGLEDRLLKKK----PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1018 IVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
V+ +R + G+T++ H P ++ D + +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 7e-19
Identities = 29/80 (36%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1037
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1038 HQPGIDIFDAFDELFLMKRG 1057
H P A D + ++K G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-18
Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 18/189 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L GL+ A G + AL+G +GAGK+TL+ L+G R G + + Y +K R
Sbjct: 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERR 67
Query: 915 IS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLI 969
G Q+ + + V + + + L L + E R + E + V L
Sbjct: 68 QRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEA-EVERR---VREALTAVGASGLR 121
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 122 ERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAE 176
Query: 1030 GRTVVCTIH 1038
G TVV + H
Sbjct: 177 GMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 56/191 (29%), Positives = 88/191 (46%), Gaps = 16/191 (8%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--K 907
++G++ R G + +G +GAGKTT + +L+ R T G ++GY +
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVR 59
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ R G Q +T E+L L P+ ++E R EE++EL EL
Sbjct: 60 EPRKVRRSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEER---AEELLELFELGE 116
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
VG S R+RL IA L+ P ++F+DEPT+GLD R + +R
Sbjct: 117 AADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK 171
Query: 1028 DTGRTVVCTIH 1038
+ G T++ T H
Sbjct: 172 EEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 52/186 (27%), Positives = 92/186 (49%), Gaps = 12/186 (6%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA- 913
++G+S +PG +T L+G +GAGKTT + +L+G G T+ G+ +E
Sbjct: 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD--AGFATVDGFDVVKEPAEA 76
Query: 914 -RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G+ + +T E+L Y A L + + +EE+ + + ++ L+
Sbjct: 77 RRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRR 133
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R G+
Sbjct: 134 VG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKC 188
Query: 1033 VVCTIH 1038
++ + H
Sbjct: 189 ILFSTH 194
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-18
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 36/201 (17%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
LV L+ +S + RPG + L+G +GAGKTTL +++SG R T G + I+G P +
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI 72
Query: 910 ------ETFARISGYCEQNDIHSPF--VTVYESLL--------YSAWLRLPPEVDSETRK 953
TF Q F +TV E+++ L + E R+
Sbjct: 73 ARLGIGRTF--------QIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARE 122
Query: 954 MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
EE++E V L L G LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 123 R-AEELLERVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1014 RAAAIVMRTVRNTVDTGRTVV 1034
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-18
Identities = 70/269 (26%), Positives = 108/269 (40%), Gaps = 51/269 (18%)
Query: 806 ILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFR 865
IL K + LP + F+ V + D +L LS
Sbjct: 449 ILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYG-----------PDDPPVLEDLSLEIP 497
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQ---ETFARISGYCE 920
PG A++G SG+GK+TL+ +L G Y G I + G + R GY
Sbjct: 498 PGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGYVL 553
Query: 921 QNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETRKMFIEEVMELVELKPLIQSL--- 972
Q+ L+S +R PE E I E +L I++L
Sbjct: 554 QDP-----------FLFSGSIRENIALGNPEATDEE----IIEAAQLAGAHEFIENLPMG 598
Query: 973 ----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
VG G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ + +
Sbjct: 599 YDTPVGEGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-QIL 656
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
GRTV+ H+ + D + ++ +G
Sbjct: 657 QGRTVIIIAHRL--STIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 33/205 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFA 913
L +S + PG AL+G SGAGK+TL+ L+G T G + + T I+ K
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 914 RI-SGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETRKMFIEEVMELV 963
R G Q ++V E++L + + L P+ + + + +
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE-------KQRALAAL 129
Query: 964 ELKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
E VGL LS Q++R+ IA L+ P +I DEP + LD ++
Sbjct: 130 ER-------VGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQ 182
Query: 1019 VMRTVRN-TVDTGRTVVCTIHQPGI 1042
VM ++ + G TV+ ++HQ +
Sbjct: 183 VMDLLKRINREEGITVIVSLHQVDL 207
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 4e-18
Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 20/223 (8%)
Query: 850 LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909
+ L +S G L+G +G+GK+TL+ +L+G +G + + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG--LLKPTSGEVLVDGLDTSS 70
Query: 910 ET----FARISGYCEQNDIHSPFV-TVYESLLYSA-WLRLPPEVDSETRKMFIEEVMELV 963
E + G QN F TV + + + L LP E + E R + E +ELV
Sbjct: 71 EKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPRE-EIEER---VAEALELV 126
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L+ L+ LS Q++R+ IA L P I+ +DEPT+GLD + ++ +
Sbjct: 127 GLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELL 181
Query: 1024 RNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
+ + G+T++ H + + D + ++ G+ + G
Sbjct: 182 KKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 6e-18
Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQE 910
+L G+ R G + A++G SG+GK+TL+ ++ G R G I G +
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
Query: 911 TFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
R G Q + + TV+E++ + LR E ++ EE+ E+V
Sbjct: 74 RLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVLE 119
Query: 966 KPLIQSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
K L VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 120 K-L--EAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVID 176
Query: 1021 RTVRNTVDT-GRTVVCTIHQ 1039
+R+ G T + H
Sbjct: 177 DLIRSLKKELGLTSIMVTHD 196
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 1e-17
Identities = 61/193 (31%), Positives = 93/193 (48%), Gaps = 22/193 (11%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQETFA 913
L+G+S PG A++G SG+GK+TL+ L+G + G +T+ G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDP--LQGEVTLDGVPVSSLDQDEVR 408
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R C Q D H TV E+L + P+ E + +E V L +++L
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATDEE----LWAALERVGLADWLRALP 458
Query: 974 -GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
GL G + LS +R+RL +A L+A+ I+ +DEPT LDA A ++ +
Sbjct: 459 DGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517
Query: 1028 DTGRTVVCTIHQP 1040
+GRTVV H
Sbjct: 518 LSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-17
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 22/201 (10%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPK 907
+ L +S PG AL+G SGAGK+TL+++L G T G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+++ + Q+ PF+ ++ + L P D+E I E +E L
Sbjct: 391 -ADSWRDQIAWVPQH----PFL-FAGTIAENIRLARPDASDAE-----IREALERAGLDE 439
Query: 968 LIQSL-VGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
+ +L GL G +GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLE 499
Query: 1022 TVRNTVDTGRTVVCTIHQPGI 1042
+R + GRTV+ H+ +
Sbjct: 500 ALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+ +S + G + +G +GAGKTT M ++ G + G IT Y K E R
Sbjct: 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRR 73
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
I E + P +T E+L A L + I+EV+++V LK
Sbjct: 74 IGALIEAPGFY-PNLTARENLRLLARLLGIRKKR-------IDEVLDVVGLKD-----SA 120
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G TV+
Sbjct: 121 KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVL 180
Query: 1035 CTIHQ 1039
+ H
Sbjct: 181 ISSHL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 3e-17
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 55/254 (21%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ + LK VS I+ G ++GP SGK+TLL + G LD SG V +G D
Sbjct: 11 GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLL-NILGGLDRP--TSGEVRVDGTD 67
Query: 219 MGEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
+ + + AA ++ Q N + ++T E + GV + E R
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKK-----ERRERAE 122
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
E L+ +GL + E+ SGG+++R
Sbjct: 123 EL-----------------------------LERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 332 VTTGE-MMVGPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
V + P + + DE TG LDS T +++ L++ ++ +GT ++ ++ PE
Sbjct: 149 VAIARALANDPKI-ILADE-PTGNLDSETGKEVMELLRE-LNKEAGTTIV-VVTHDPELA 204
Query: 390 DLFDDIILLSDGQI 403
+ D II L DG+I
Sbjct: 205 EYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-17
Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 37/229 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 911
L ++ PG A++G SGAGK+TL+ ++ + G I +IT K ++
Sbjct: 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKL 77
Query: 912 FARISGYCEQNDIHSPFVTVYESLL---------YSAWLRLPPEVDSETRKMFIEEVMEL 962
RI G Q+ +TV E++L + + L E D E +
Sbjct: 78 RRRI-GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEED-------KERALSA 129
Query: 963 VELKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+E VGL LS Q++R+ IA L P +I DEP + LD + +
Sbjct: 130 LER-------VGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSK 182
Query: 1018 IVMRTVRN-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
VM ++ + G TV+ +HQ +D+ + + + + G+ ++ G
Sbjct: 183 QVMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 7e-17
Identities = 65/279 (23%), Positives = 110/279 (39%), Gaps = 54/279 (19%)
Query: 146 TVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
E++ LKDVS I+ G LL+GP SGK+TLL L G L +
Sbjct: 4 IEAENLSFRY------PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT 57
Query: 206 ---LKVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYE 261
+ V G T + + E + + Q+ D+ + TV + +AF
Sbjct: 58 SGEVLVDGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAF------------ 103
Query: 262 LLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321
L L E ++ E L+++GLE D
Sbjct: 104 GLENLGLPREE------------IEERVAE----------ALELVGLEELLD-----RPP 136
Query: 322 RGISGGERKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+SGG+++RV G + +GP + L +DE + GLD +++ LK+ + G +I
Sbjct: 137 FNLSGGQKQRVAIAGVLAMGPEI-LLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIII 194
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+ + D +++L DG+I+ G + E +
Sbjct: 195 VTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 17/187 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 912
+ G+S R G + L+G +GAGKTT + +L+ + T G T++G+ ++
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREV 71
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ +T +E+L A L V R+ I+E+++ V L L
Sbjct: 72 RRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRL 128
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GR 1031
V S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 V-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1032 TVVCTIH 1038
T++ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-16
Identities = 61/237 (25%), Positives = 102/237 (43%), Gaps = 29/237 (12%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
++ +S + G L+G SG GKTTL+ +++G + + G I I+ P
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVP-- 73
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R G Q+ P +TV E++ + L++ ++ K +EE +ELV L+
Sbjct: 74 --PEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGF 129
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1027
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++
Sbjct: 130 ADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQR 184
Query: 1028 DTGRTVVCTIHQPGIDIFDAF---DELFLMKRG-------GQEIYVGPLGRHSCQLI 1074
+ G T V H D +A D + +M G +EIY P R I
Sbjct: 185 ELGITFVYVTH----DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 55/201 (27%), Positives = 85/201 (42%), Gaps = 33/201 (16%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
L +N +S RPG + L+G +GAGKTTL ++++G + + G + I+G P +
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI 76
Query: 910 ------ETFARISGYCEQNDIHSPFVTVYESLL--------YSAWLRLPPEVDSETRKMF 955
TF Q P +TV E++ S L P E
Sbjct: 77 ARLGIARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARE 128
Query: 956 I-EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
E++E V L L G LS Q++RL IA L P ++ +DEP +GL+
Sbjct: 129 RARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPE 183
Query: 1015 AAAIVMRTVRNTVDT-GRTVV 1034
+ +R D G T++
Sbjct: 184 ETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 2e-16
Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT--GNITISGYPKKQE---T 911
L+ +S RPG AL+G +GAGK+TL +L T Y+ G I+++G+ ++
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
AR+ +Q + ++V ++L Y A L ++ R I E++ + L +
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGL-----A 123
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1030
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 124 ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+V+ H +D +A D L ++ RG
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHRG 208
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 2e-16
Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 23/242 (9%)
Query: 807 LTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEM---KLQGVLE---DKLVLLNGL 860
LT A +R + P E E S+ L GV + DK V+ NGL
Sbjct: 2 LTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVV-NGL 60
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARIS-GY 918
S G L+G +GAGK+T+ ++ G + G IT+ G P + AR G
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGV 118
Query: 919 CEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVM-ELVELKPLIQSLVGLP 976
Q D TV E+LL + + + TR+ IE V+ L+E L +S
Sbjct: 119 VPQFDNLDLEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-ESKADAR 169
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
VS LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T
Sbjct: 170 -VSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLT 228
Query: 1037 IH 1038
H
Sbjct: 229 TH 230
|
Length = 340 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 3e-16
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGN-ITISGYPKKQETFA 913
L+G++ + G L+G SGAGK+TL+ ++ + T G I N +S + +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ P VYE++ EV + + V +EL L
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVA------FALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LP + LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1033 VVCTIH 1038
VV H
Sbjct: 189 VVVATH 194
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 5e-16
Identities = 63/224 (28%), Positives = 103/224 (45%), Gaps = 27/224 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFA 913
L ++ G + A++G SGAGK+TL+ L+G T G I N I+ K+
Sbjct: 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKL 79
Query: 914 RIS-GYCEQNDIHSPFVTVYESLL-----YSAWLR----LPPEVDSETRKMFIEEVMELV 963
R G Q P ++V E++L Y++ R L + E + ++ + +
Sbjct: 80 RRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK---EDKAQALDALERVG 136
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L Q S LS Q++R+ IA LV P II DEP + LD +A VM +
Sbjct: 137 ILDKAYQR------ASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDIL 190
Query: 1024 R--NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
+ N D G TV+ +HQ +D+ + + + + G+ ++ GP
Sbjct: 191 KDINQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 52/180 (28%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYP-KKQETFAR--ISGY 918
G +T L+G +GAGKTTL+ ++ + +G +TI G + +F R I
Sbjct: 26 EEGEITGLLGENGAGKTTLLRMI-----ATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
+ +++ +T E+L Y A L + + K I E+ + ++L + VG
Sbjct: 81 FGERGLYAR-LTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG---- 132
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + GR V+ + H
Sbjct: 133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSH 191
|
Length = 245 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 6e-16
Identities = 67/254 (26%), Positives = 109/254 (42%), Gaps = 45/254 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L VS ++PG + +LGP +GK+TLL AL+G+L SG VT NG + + PE
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
A H + +LAF Q V ++ R + +G +P+ D +
Sbjct: 72 ELA-------RHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM------V 339
+A+A + GL R +SGGE++RV ++ V
Sbjct: 118 QALAATD------------LSGLA--------GRDYRTLSGGEQQRVQLARVLAQLWPPV 157
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
LF+DE ++ LD + + +Q G AV+++L D I+LL
Sbjct: 158 PSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIVLLH 215
Query: 400 DGQIVYQGPRELVL 413
G+++ G + VL
Sbjct: 216 QGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 57/241 (23%), Positives = 101/241 (41%), Gaps = 37/241 (15%)
Query: 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDV 886
+ F V +S ++ L+ +S R G A++G G+GK+TL+ +
Sbjct: 1 GRIEFRNVSFSYP-----------NQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKL 49
Query: 887 LSG--RKTGGYI-TGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRL 943
L+G + T G + I + I GY Q D+ + T+ +++ A
Sbjct: 50 LAGLYKPTSGSVLLDGTDIRQLDP-ADLRRNI-GYVPQ-DVTLFYGTLRDNITLGA---- 102
Query: 944 PPEVDSETRKMFIEEVMELVELKPLIQS-------LVGLPGVSGLSTEQRKRLTIAVELV 996
P D E I EL + + +G G GLS QR+ + +A L+
Sbjct: 103 -PLADDER----ILRAAELAGVTDFVNKHPNGLDLQIGERG-RGLSGGQRQAVALARALL 156
Query: 997 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056
+P I+ +DEPTS +D + + +R + +T++ H+P + D D + +M
Sbjct: 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLL-GDKTLIIITHRPSLL--DLVDRIIVMDS 213
Query: 1057 G 1057
G
Sbjct: 214 G 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.6 bits (194), Expect = 9e-16
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 26/215 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 912
LL+G+S RPG + A++G +GAGK+TL+ LSG G +T + ++ +P ++
Sbjct: 16 LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEE--L 73
Query: 913 ARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSETRK--MFIEEVMELVELKPLI 969
AR QN + PF TV E + R+P E + + + +L L
Sbjct: 74 ARHRAVLPQNSSLAFPF-TVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTV 1023
LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRD-----YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
R G V+ +H +++ + D + L+ +G
Sbjct: 185 RQLAREGGAVLAVLHD--LNLAAQYADRIVLLHQG 217
|
Length = 259 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 75.5 bits (187), Expect = 1e-15
Identities = 48/208 (23%), Positives = 83/208 (39%), Gaps = 60/208 (28%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 912
+L +S +PG A++G SG+GK+TL+ +L T G I + + E+
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLD--LESL 74
Query: 913 ARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ Y Q+ PF+ T+ E++L
Sbjct: 75 RKNIAYVPQD----PFLFSGTIRENIL--------------------------------- 97
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
SG QR+R+ IA L+ +P I+ +DE TS LD A+++ +R +
Sbjct: 98 ---------SGG---QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LAK 144
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G+TV+ H+ D + ++ G
Sbjct: 145 GKTVIVIAHRL--STIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 74/258 (28%), Positives = 110/258 (42%), Gaps = 55/258 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
LKDVS I PG L+GP +GK+TLL L G ++ + SG V +G D+ +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGK 71
Query: 225 -ERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGI-KPD 278
R I Q N I ++V E + L L RR +
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-M 337
P + K A L+ +GL A D++ SGG+++RV +
Sbjct: 118 PKEE---KQRALA----------ALERVGLLDKAYQRA-DQL----SGGQQQRVAIARAL 159
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDL----F 392
M P L L DE LD +++ Q+++ LK+ ++ G T ++SL Q DL
Sbjct: 160 MQQPKLIL-ADEPVASLDPASSRQVMDLLKR-INREEGITVIVSLHQV-----DLAREYA 212
Query: 393 DDIILLSDGQIVYQGPRE 410
D I+ L DG+IV+ GP
Sbjct: 213 DRIVGLKDGRIVFDGPPA 230
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-15
Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 26/177 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L +S G +TAL+G SG GK+TL+ D++ G G + + G
Sbjct: 16 LKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD----EGEVLLDGKDIYD 71
Query: 910 ETFARIS-----GYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
+ G Q +PF ++Y+++ Y L E +EE +
Sbjct: 72 LDVDVLELRRRVGMVFQKP--NPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKA 127
Query: 964 ELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 128 ALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 45/194 (23%), Positives = 86/194 (44%), Gaps = 22/194 (11%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---ETFARISGYCE 920
+T + G SGAGK+TL+ ++G + GG I N T+ +K+ R G
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980
Q P + V E+L + L + + E ++ ++E+++L+ L L+ +
Sbjct: 82 QQYALFPHLNVRENLAFG----LKRKRNRE-DRISVDELLDLLGLDHLLNR-----YPAQ 131
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LS +++R+ +A L A P ++ +DEP S LD ++ ++ ++ P
Sbjct: 132 LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------NLNIP 184
Query: 1041 GIDIFDAFDELFLM 1054
I + E +
Sbjct: 185 VIFVTHDLSEAEYL 198
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-15
Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L ++ G L+G SG GK+TL+ +++G T G I ++ P ++
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R QN P +TVYE++ + LR P+ + + R ++EV +L+ L+ L+
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNRKP 131
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 132 -----LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 61/190 (32%), Positives = 99/190 (52%), Gaps = 15/190 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
DKLV+ +GLS + G L+G +GAGKTT + +L G G+I++ G P
Sbjct: 19 DKLVV-DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRA 75
Query: 912 -FARIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
AR G Q D P TV E+LL + + L + R + + ++E +L+
Sbjct: 76 RHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENK 131
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ VG LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ +
Sbjct: 132 ADAKVG-----ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA 186
Query: 1029 TGRTVVCTIH 1038
G+T++ T H
Sbjct: 187 RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 3e-15
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 19/195 (9%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETF 912
VL +GLS G L G +G+GKTTL+ +++G G I + G
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG----TIKLDGGDIDDPDV 71
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
A Y + P +TV E+L + A E+D I +E V L PL
Sbjct: 72 AEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELD-------IAAALEAVGLAPLA--- 121
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G
Sbjct: 122 -HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGI 179
Query: 1033 VVCTIHQPGIDIFDA 1047
V+ H P + + A
Sbjct: 180 VIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 62/265 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK V+ +K G + ++GP SGK+TL +AG S SG + + G D+ E P+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH-PSYEVTSGTILFKGQDLLELEPDE 73
Query: 227 TAA---YIS-QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A +++ Q+ I ++ E L + ARR + +D
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRSARG----EEPLD 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTTGEM 337
+ + L +LG++ +E + G SGGE+KR +M
Sbjct: 116 --LLDFLKLLKAK-------LALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS-------LLQPAPETY 389
+ P LA+ +DEI +GLD + + + + +I+ ++P
Sbjct: 159 ALLEPKLAI-LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKP----- 212
Query: 390 DLFDDIILLSDGQIVYQGPRELVLE 414
D + +L DG+IV G EL E
Sbjct: 213 ---DYVHVLLDGRIVKSGDVELAKE 234
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 72/257 (28%), Positives = 102/257 (39%), Gaps = 62/257 (24%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
++DVS + G +T LLG +GKTTLL +A L SG+VT +G D T
Sbjct: 18 VRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVD--------T 66
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
S IG +T RE L + AR L L+R+E +A I
Sbjct: 67 VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LNGLSRKEIKARI-- 114
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
A + K L L D VG S G +++V
Sbjct: 115 -----------------AELS-----KRLQLLEYLDRRVG-----EFSTGMKQKVAIARA 147
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
+V L +DE ++GLD T + + +KQ N G AVI E L D +I+
Sbjct: 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIV 205
Query: 398 LSDGQIVYQGPRELVLE 414
L G++V +G E +
Sbjct: 206 LHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 6e-15
Identities = 65/230 (28%), Positives = 101/230 (43%), Gaps = 40/230 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S + G AL+G SG GK+TL+ +++G R T G + + G P R
Sbjct: 20 LEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG----EVLVDGEPVTGPGPDR 75
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
GY Q D P++TV +++ L L +E R E EL+EL VG
Sbjct: 76 --GYVFQQDALLPWLTVLDNVALG--LELQGVPKAEAR----ERAEELLEL-------VG 120
Query: 975 LPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1028
L G LS R+R+ +A L +P ++ +DEP S LDA + + + +
Sbjct: 121 LSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE 180
Query: 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFE 1078
TG+TV+ H DI DE + + V L ++++ E
Sbjct: 181 TGKTVLLVTH----DI----DEAVFL---ADRVVV--LSARPGRIVAEVE 217
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.2 bits (186), Expect = 7e-15
Identities = 62/264 (23%), Positives = 96/264 (36%), Gaps = 69/264 (26%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
IL VS + G + LLG +GKTTLL + G L SG + ++G D+ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPP 69
Query: 225 ERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSR-------YELLTELA-RRENE 272
A Y+ + E+TV E L A + R YEL L RR+
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
AG T+ SGGE++ +
Sbjct: 130 AG---------------------------------------TL---------SGGEQQML 141
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYD 390
+M P L L +DE S GL +I +++ + G ++ + Q A +
Sbjct: 142 AIARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIRE---LRDEGVTILLVEQNARFALE 197
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
+ D +L G++V +G +L
Sbjct: 198 IADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 1e-14
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 21/221 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+ +S + G L AL+G SGAGK+TL+ +++G G I N + R
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDR 77
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRL--PPEVDSETRKMFIEEVMELVELKPLIQSL 972
G+ Q+ P +TV +++ + +R P E + R +EE++ LV+L+ L
Sbjct: 78 KVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRAR---VEELLRLVQLEGLADRY 134
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1031
P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D G
Sbjct: 135 ---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGV 189
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGG-------QEIYVGP 1065
T V H + + D + ++ +G E+Y P
Sbjct: 190 TTVFVTHDQE-EALELADRVVVLNQGRIEQVGPPDEVYDHP 229
|
Length = 345 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-14
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 21/192 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETF 912
+++G+ PG LT L+G +G+GK+TL+ +L+G R G + + + G ++
Sbjct: 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR-- 73
Query: 913 ARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVELK 966
AR EQ+ + +TV + + S W P + + + EL
Sbjct: 74 ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRA-----LARTELS 128
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L +S LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 129 HLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVREL 183
Query: 1027 VDTGRTVVCTIH 1038
TG TVV +H
Sbjct: 184 AATGVTVVAALH 195
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-14
Identities = 49/191 (25%), Positives = 80/191 (41%), Gaps = 15/191 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+ L + LS G + G +GAGKTTL+ +L+G R G + +
Sbjct: 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YWQGEPIQNVR 70
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
E++ + Y +T E+L + W R ++ T I E + V L L
Sbjct: 71 ESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGLE 124
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
LP V LS Q++R+ +A ++ + +DEP + LD A++ +
Sbjct: 125 D----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQ 179
Query: 1030 GRTVVCTIHQP 1040
G V+ T HQP
Sbjct: 180 GGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 48/214 (22%), Positives = 87/214 (40%), Gaps = 32/214 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L ++ + +PG A++G +GAGKTTL+++L G I I I +K +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRK--SLR 76
Query: 914 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
+ G Q F+ T+ E++ + E + I
Sbjct: 77 SMIGVVLQ----DTFLFSGTIMENIRLG---------RPNATDEEVIEAAKEAGAHDFIM 123
Query: 971 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
L +G LS +R+ L IA ++ +P I+ +DE TS +D ++ +
Sbjct: 124 KLPNGYDTVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEAL 182
Query: 1024 RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ GRT + H+ I +A D++ ++ G
Sbjct: 183 EKLMK-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 2e-14
Identities = 61/271 (22%), Positives = 100/271 (36%), Gaps = 76/271 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
P+ + L DVS IK G L+G SGK+TL A+ G L SG + ++G D
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 219 MGEFVPE------RTAAYISQHD-----NHIGEMTVRETLAFSARCQGVGSRYELLTELA 267
+ + + + Q D N MT+ E +A R G S+ E + A
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQ-DPMSSLNPR--MTIGEQIAEPLRIHGKLSKKEAR-KEA 124
Query: 268 RRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327
G+ + V + +SGG
Sbjct: 125 VLLLLVGVGLPEE-----------------------------------VLNRYPHELSGG 149
Query: 328 ERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI--- 379
+R+RV + ALA L DE ++ LD S QI++ LK+ + G ++
Sbjct: 150 QRQRV-----AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK-LQEELGLTLLFIT 203
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
++ + D + ++ G+IV +G
Sbjct: 204 HDLGVVA------KIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 3e-14
Identities = 66/268 (24%), Positives = 97/268 (36%), Gaps = 69/268 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+LK V ++ G + ++GP SGK+TLL + G L SG V +G D+
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEA 70
Query: 226 ------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
R + Q +TV E +AF R S E + E+
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIREIVL----------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
K L+ +GL D + +SGG +KRV
Sbjct: 119 -----EK----------------LEAVGLRGAEDLYPAE-----LSGGMKKRV------- 145
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390
ALA L DE + GLD + I + L + + G I + +
Sbjct: 146 --ALARALALDPELLLYDEPTAGLDPIASGVIDD-LIRSLKKELGLTSIMVTHDLDTAFA 202
Query: 391 LFDDIILLSDGQIVYQGPRELVLEFFES 418
+ D I +L DG+IV +G E E S
Sbjct: 203 IADRIAVLYDGKIVAEGTPE---ELRAS 227
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 58/252 (23%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+D+S ++ G +T L+GP +GK+TLL A+ G L S SG + G + +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKR 74
Query: 226 RTAAYISQHDNHIGE--MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
Y+ Q + +TV++ + G + L +++ E
Sbjct: 75 LRIGYVPQKSSVDRSFPITVKDVVLL-----GRYGKKGWFRRLNKKDKE----------- 118
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ EA L+ +G+E D +G+ +SGG+++RV +
Sbjct: 119 -------KVDEA-------LERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQNPD 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL-LQPAPETYDLFDDIILLSDGQ 402
L +DE TG+D + +I + LK+ +++ L FD +I L +
Sbjct: 160 LLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---AYFDRVICL-NRH 215
Query: 403 IVYQGPRELVLE 414
++ GP E VL
Sbjct: 216 LIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 4e-14
Identities = 54/198 (27%), Positives = 91/198 (45%), Gaps = 23/198 (11%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQE 910
V+L+ L+ G + A++G SG+GK+TL++++ + G Y+ G T KK
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 911 TFARIS-GYCEQNDIHSPFV-----TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
F R GY QN F TV E+L L+ E R+ +E +E V
Sbjct: 72 KFRREKLGYLFQN-----FALIENETVEENLDLG--LKYKKLSKKEKREK-KKEALEKVG 123
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
L ++ + LS +++R+ +A ++ P +I DEPT LD + V+ +
Sbjct: 124 LNLKLKQKI-----YELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLL 178
Query: 1025 NTVDTGRTVVCTIHQPGI 1042
D G+T++ H P +
Sbjct: 179 ELNDEGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 4e-14
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 25/197 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI---TGNITISGYPKKQ 909
V+L+G+ G + A++G SG+GK+TL+ ++ G R G I +I +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELY 81
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
E R+ G Q +TV+E++ + LR E K+ + ELV +K
Sbjct: 82 EIRKRM-GVLFQQGALFSSLTVFENVAFP--LR-------EHTKLPESLIRELVLMK--- 128
Query: 970 QSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
LVGL G S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +
Sbjct: 129 LELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELI 188
Query: 1024 RNTVDT-GRTVVCTIHQ 1039
R D G TV+ H
Sbjct: 189 RELNDALGLTVIMVTHD 205
|
Length = 263 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.5 bits (179), Expect = 5e-14
Identities = 65/261 (24%), Positives = 101/261 (38%), Gaps = 70/261 (26%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
+ + LKDV+ I+ G ++GP SGK+TLL L G LD SG V NG D+
Sbjct: 13 LGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLL-NLLGGLDK--PTSGEVLINGKDL 69
Query: 220 GEFVPERTAA-------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + A ++ Q+ N + ++TV E + G + R E
Sbjct: 70 TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-----RRKRAAEE 124
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
L+VLGLE + +SGG+++RV
Sbjct: 125 L-----------------------------LEVLGLEDRLL----KKKPSELSGGQQQRV 151
Query: 333 TTGEMMVGPALA-----LFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVI----SLL 382
+ AL + DE TG LDS T +++ L++ ++ G +I
Sbjct: 152 -----AIARALINNPKIILADEP-TGNLDSKTAKEVLELLRE-LNKERGKTIIMVTHD-- 202
Query: 383 QPAPETYDLFDDIILLSDGQI 403
PE D +I L DG+I
Sbjct: 203 ---PELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 74.2 bits (182), Expect = 5e-14
Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 16/188 (8%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK-KQETFA 913
V++N LS G L+G +GAGK+T+ +L G + G IT+ G P + A
Sbjct: 18 VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLA 75
Query: 914 RIS-GYCEQNDIHSPFVTVYESLL-YSAWLRLPPEVDSETRKMFIEEVM-ELVELKPLIQ 970
R++ G Q D P TV E+LL + + + TR+ IE V+ L+E L +
Sbjct: 76 RVAIGVVPQFDNLDPEFTVRENLLVFGRYFGM------STRE--IEAVIPSLLEFARL-E 126
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S + V+ LS ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G
Sbjct: 127 SKADVR-VALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARG 185
Query: 1031 RTVVCTIH 1038
+T++ T H
Sbjct: 186 KTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 7e-14
Identities = 72/272 (26%), Positives = 109/272 (40%), Gaps = 63/272 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVP- 224
ILK V+ +K G + ++GP SGK+TL + G +V G + ++G D+ E P
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMG--HPKYEVTEGEILFDGEDILELSPD 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRYELLTELARRENEAGIKPDPDID 282
ER A I LAF GV + L + R GI P+ +
Sbjct: 77 ERARAGI--------------FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKE 122
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVTTGEM 337
+ KA ++LGL+ +E + G SGGE+KR ++
Sbjct: 123 LKEKA----------------ELLGLD--------EEFLERYVNEGFSGGEKKRNEILQL 158
Query: 338 MV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
++ P LA+ +DE +GLD + + G +I+ Q L D I
Sbjct: 159 LLLEPKLAI-LDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ------RLLDYIK 211
Query: 397 -----LLSDGQIVYQGPRELVLEFFESMGFKC 423
+L DG+IV G EL E E G+
Sbjct: 212 PDKVHVLYDGRIVKSGDPELA-EELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 56/188 (29%), Positives = 93/188 (49%), Gaps = 18/188 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+NG+S + + G + L+G +GAGKTT ++ G + G I I+ P + A
Sbjct: 16 VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR--A 73
Query: 914 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R+ GY Q S F +TV E++L +R + + R+ +EE++E + L +
Sbjct: 74 RLGIGYLPQE--ASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRK 128
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D G
Sbjct: 129 SKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1031 RTVVCTIH 1038
V+ T H
Sbjct: 184 IGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 8e-14
Identities = 54/187 (28%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 911
L G+S G + AL+G +GAGKTTL+ + G G I +IT
Sbjct: 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDIT------GLPP 69
Query: 912 FARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKP 967
R GY + P +TV E+LL A+ R + + +E V EL LK
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFPRLKE 124
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ L G LS +++ L IA L++ P ++ +DEP+ GL + + +R
Sbjct: 125 RRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR 179
Query: 1028 DTGRTVV 1034
D G T++
Sbjct: 180 DEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (180), Expect = 8e-14
Identities = 57/202 (28%), Positives = 87/202 (43%), Gaps = 38/202 (18%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT---GNITISGYPKKQ--- 909
LL+ +S RPG + A++G +GAGK+TL+ LS G ++ G + ++G P
Sbjct: 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWSP 71
Query: 910 ETFARISGYCEQNDIHS----PFVTVYE--SLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
AR Q HS PF TV E ++ + E D+ + + V
Sbjct: 72 AELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDAL-----VAAALAQV 122
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAAA 1017
+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 123 DLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQH 177
Query: 1018 IVMRTVRN-TVDTGRTVVCTIH 1038
V+R R + G V+ +H
Sbjct: 178 HVLRLARQLAHERGLAVIVVLH 199
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 33/89 (37%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI- 379
+RG+S +RKR+T G + LF+DE ++GLDS + IV LK+ +SG A++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA--DSGQAILC 163
Query: 380 SLLQPAPETYDLFDDIILL-SDGQIVYQG 407
++ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 1e-13
Identities = 63/244 (25%), Positives = 99/244 (40%), Gaps = 46/244 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L D+S ++PG LLGP GKTTLL +AG SG + +G D+ PE
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPE 70
Query: 226 RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
R + Q +TV E +AF + +GV E+ R E
Sbjct: 71 RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRARVREL----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPAL 343
L+++GLE + + +SGG+++RV + P+L
Sbjct: 115 ------------------LELVGLE-----GLLNRYPHELSGGQQQRVALARALAREPSL 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD+ ++ LK + G I + E L D I ++++G+I
Sbjct: 152 -LLLDEPLSALDAKLREELREELK-ELQRELGITTIYVTHDQEEALALADRIAVMNEGRI 209
Query: 404 VYQG 407
V G
Sbjct: 210 VQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-13
Identities = 73/276 (26%), Positives = 115/276 (41%), Gaps = 66/276 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
+LKDV+ I+ G +LLGP GK+TLL +AG + + SG + +G D+ + P
Sbjct: 17 EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPE 73
Query: 225 ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+R A + Q H MTV E +AF + +GV E+ +R E
Sbjct: 74 KRGIAMVFQNYALYPH------MTVYENIAFGLKLRGVPKA-----EIDKRVKEV----- 117
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
K+LGLE + +SGG+R+RV +
Sbjct: 118 ------------------------AKLLGLEHLLNR-----KPLQLSGGQRQRVALARAL 148
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
V +DE + LD+ + + +K+ +H GT I + E L D I+++
Sbjct: 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKK-LHERLGTTTIYVTHDQVEAMTLADRIVVM 207
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P EL ++ P VA F+
Sbjct: 208 NDGRIQQVGTPLEL---------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.9 bits (182), Expect = 1e-13
Identities = 68/285 (23%), Positives = 112/285 (39%), Gaps = 77/285 (27%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L D+S IK G + LLGP +GK+TLL +AG +GR+ NG + +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFD------ 68
Query: 228 AAYISQHDNHIG----------EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ ++ D +G MTV + +AF + + R +EA I+
Sbjct: 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR------------KERPSEAEIRA 116
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDEMIRGISGGERKRVTTGE 336
+V L + + D +SGG+R+RV
Sbjct: 117 --------------------------RVEELLRLVQLEGLADRYPAQLSGGQRQRVA--- 147
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
+ ALA L +DE LD+ ++ L++ +H G + + E +L
Sbjct: 148 --LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK-LHDRLGVTTVFVTHDQEEALEL 204
Query: 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
D +++L+ G+I GP + V + P + VA FL EV
Sbjct: 205 ADRVVVLNQGRIEQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 1e-13
Identities = 66/278 (23%), Positives = 101/278 (36%), Gaps = 94/278 (33%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L DVS ++PG + +LGP +GK+TLL AL+G+L SG V NG + ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPA 72
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A A + QH +L+F + V
Sbjct: 73 ELARRRAVLPQH----------SSLSFPFTVEEV-------------------------- 96
Query: 283 VYMKAI--ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
V M E + + L + L + +SGGE++RV
Sbjct: 97 VAMGRAPHGLSRAEDDALVAAALAQVDL-----AHLAGRDYPQLSGGEQQRV-------- 143
Query: 341 PALA---------------LFMDEISTGLDSS---TTFQIV-NCLKQHVHINSGTAVISL 381
LA L +DE ++ LD + ++ + G AVI +
Sbjct: 144 -QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-----GLAVIVV 197
Query: 382 LQPAPETYDL------FDDIILLSDGQIVYQGPRELVL 413
L +DL D I+LL G++V G VL
Sbjct: 198 L------HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-13
Identities = 67/260 (25%), Positives = 100/260 (38%), Gaps = 70/260 (26%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--- 218
KK + + VS +KPG +T LLGP +GKTT L LAG L+ +G T +G D
Sbjct: 15 KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVK 71
Query: 219 --------MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
+G FV + T Y +T RE L + A G+
Sbjct: 72 EPAEARRRLG-FVSDSTGLY--------DRLTARENLEYFAGLYGL-------------- 108
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
+G E + LG+E D VG G S G R+
Sbjct: 109 --------------------KGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQ 143
Query: 331 RVTTGEMMVGPALALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
+V +V L +DE +TGLD + + + L+ G ++ E
Sbjct: 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-----LGKCILFSTHIMQE 198
Query: 388 TYDLFDDIILLSDGQIVYQG 407
L D +++L G++VY+G
Sbjct: 199 VERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 55/221 (24%), Positives = 95/221 (42%), Gaps = 34/221 (15%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+ +L ++ + G A++G SG GK+TL+ +++G + T G + + G P
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG----EVLLDGRPVTG 69
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
GY Q D P++TV +++ L E+ +++ E EL+EL
Sbjct: 70 PGPDI--GYVFQEDALLPWLTVLDNVA------LGLELRGKSKAEARERAKELLEL---- 117
Query: 970 QSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
VGL G LS R+R+ IA L P ++ +DEP LDA + +
Sbjct: 118 ---VGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1025 NTV-DTGRTVVCTIHQPGIDIFDAF---DELFLMKRGGQEI 1061
+T +TV+ H D+ +A D + ++ I
Sbjct: 175 RLWEETRKTVLLVTH----DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 68/261 (26%), Positives = 111/261 (42%), Gaps = 55/261 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
L DV+ + G + LLGP SGK+TLL +AG L+ SGR+ NG D
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATRVHAR 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R ++ QH +TVR+ +AF R+ +A IK
Sbjct: 71 DRKIGFVFQHYALFKHLTVRDNIAFGLE--------------IRKHPKAKIK-------- 108
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
A V + L+++ LE +GD +SGG+R+RV +
Sbjct: 109 ----------ARV--EELLELVQLE-----GLGDRYPNQLSGGQRQRVALARALAVEPQV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQ-HVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE LD+ ++ + L++ H ++ T ++ Q E ++ D I+++S+G+I
Sbjct: 152 LLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ--EEAMEVADRIVVMSNGKI 209
Query: 404 --------VYQGP-RELVLEF 415
VY P V+ F
Sbjct: 210 EQIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 24/212 (11%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI----TGNITISGYPKKQETF 912
L+ +S + G + L+G +GAGKTT + ++ G I +G + G P
Sbjct: 16 LDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLDIAAR 69
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLR-LPPEVDSETRKMFIEEVMELVELKPLIQS 971
RI GY + P + V + L+Y A L+ L E E R+ I+E +E +EL
Sbjct: 70 NRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKE---EARRR-IDEWLERLELSEYANK 124
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
V LS ++++ ++ +P ++ +DEP SGLD ++ +R G+
Sbjct: 125 -----RVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGK 179
Query: 1032 TVVCTIHQPGIDIFDAF-DELFLMKRGGQEIY 1062
TV+ + HQ +++ + D + L+ +G +Y
Sbjct: 180 TVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 3e-13
Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 21/167 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQETF 912
LN LS + PG L L+G +GAGKTTLMDV++G R G G+ ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 913 ARISGYCEQNDIHSPF--VTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVE 964
AR G + + F +TV E+L S + L + +E R+ I+E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR-IDELLATIG 136
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 18/188 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT--GNITISGYPKKQETF 912
L G+S G + +G +GAGKTT + +LSG + T G + G + + ++++
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVP---WKRRKKFL 93
Query: 913 ARISGYCEQNDIHSPFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
RI Q + V +S L +A LPP + +E+ EL++L+ L+ +
Sbjct: 94 RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRL----DELSELLDLEELLDT 149
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1030
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G
Sbjct: 150 -----PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG 204
Query: 1031 RTVVCTIH 1038
TV+ T H
Sbjct: 205 TTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 60/254 (23%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
KK L VS + PG M LLGP +GKTTL+ LA S SG + +G D+
Sbjct: 11 GKKR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVL 64
Query: 221 EFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + R Y+ Q TVRE L + A +G+ P
Sbjct: 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PS 104
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ + D L+++ L + I +SGG R+RV + +
Sbjct: 105 KEVK---ARV-----------DEVLELVNL-----GDRAKKKIGSLSGGMRRRVGIAQAL 145
Query: 339 VG-PALALFMDEISTGLDSSTTFQIVNCLKQ----HVHINSGTAVISLLQPAPETYDLFD 393
VG P++ L +DE + GLD + N L + + I S T ++ ++ L +
Sbjct: 146 VGDPSI-LIVDEPTAGLDPEERIRFRNLLSELGEDRIVILS-THIVEDVE------SLCN 197
Query: 394 DIILLSDGQIVYQG 407
+ +L+ G++V++G
Sbjct: 198 QVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 4e-13
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT--GNITISGYPKKQETF 912
L+ +S + + G L+G SG+GK+TL + G + T G I G + + ++
Sbjct: 21 LDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80
Query: 913 ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
+ Q+ + S P +T+ E + + E RK + ++ V L +
Sbjct: 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVL 139
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ P LS QR+R+ IA L NP ++ DEPTS LD A ++ ++
Sbjct: 140 NR--YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 5e-13
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L G++ + G +TA++G +GAGK+TL L+G + + G I + Y +K R
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLR 81
Query: 915 IS-GYCEQNDIHSPF-VTVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
S G Q+ + F +VY+ + + A L+LP + E RK ++ ++ ++ L
Sbjct: 82 ESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK 137
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1030
LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G
Sbjct: 138 -----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG 192
Query: 1031 RTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
T++ H IDI + D +F+MK G
Sbjct: 193 LTIIIATHD--IDIVPLYCDNVFVMKEG 218
|
Length = 283 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-13
Identities = 49/170 (28%), Positives = 74/170 (43%), Gaps = 11/170 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
++ +S R G L+G SG+GK+TL +L+G + G I + +
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLR 366
Query: 914 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
R Q+ S P +TV + L LR+ R+ + E++ELV L P
Sbjct: 367 RRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLD 424
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
P LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 425 RY--PH--ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 8e-13
Identities = 68/247 (27%), Positives = 103/247 (41%), Gaps = 40/247 (16%)
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
L S+ F+ V +S K +L +S + PG A++G SG+GK+
Sbjct: 322 LKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIEPGEKVAIVGPSGSGKS 369
Query: 882 TLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLY 937
TL+ +L T G I I I RI G Q+ + F T+ E++
Sbjct: 370 TLIKLLLRLYDPTSGEILIDGIDIRDISLD-SLRKRI-GIVSQDPLL--FSGTIRENIAL 425
Query: 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLT 990
P+ E IEE ++L I +L VG GV LS QR+RL
Sbjct: 426 GR-----PDATDE----EIEEALKLANAHEFIANLPDGYDTIVGERGV-NLSGGQRQRLA 475
Query: 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050
IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+ D
Sbjct: 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHRL--STIKNADR 532
Query: 1051 LFLMKRG 1057
+ ++ G
Sbjct: 533 IIVLDNG 539
|
Length = 567 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 9e-13
Identities = 57/180 (31%), Positives = 88/180 (48%), Gaps = 20/180 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS------GY 918
RPG L+GV+GAGKTT +L+G T +G+ T++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
C Q D +T E L A LR P + IE+V ++ L SL
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEE-------IEKVANW-SIQSLGLSLYADRLA 2068
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
S +++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2069 GTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 9e-13
Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 34/203 (16%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP--- 906
D V+L+ +S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDLAL 68
Query: 907 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME----- 961
R G Q E++L++ +R + M +E V+E
Sbjct: 69 ADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAKLA 115
Query: 962 -----LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
+ EL ++VG G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 116 GAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174
Query: 1017 AIVMRTVRNTVDTGRTVVCTIHQ 1039
+MR + + GRTV+ H+
Sbjct: 175 HAIMRNMHDICA-GRTVIIIAHR 196
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 9e-13
Identities = 62/220 (28%), Positives = 101/220 (45%), Gaps = 25/220 (11%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--- 909
K L G+S + + G A++G SG+GK+TL ++ G +G++ + G KQ
Sbjct: 330 KKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDR 387
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
ETF + GY Q D+ TV E++ R D E I E +L + LI
Sbjct: 388 ETFGKHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEK----IIEAAKLAGVHELI 437
Query: 970 QSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
L +G PG + LS QR+R+ +A L +P ++ +DEP S LD +
Sbjct: 438 LRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062
++ G TVV H+P + D++ +++ G +
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 67.0 bits (165), Expect = 1e-12
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 14/103 (13%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F+Y P R K +LKDVS IKPG ++GP SGK+TLL L D +
Sbjct: 2 EFKNVSFSY----PGRPK--PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT 55
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRE 245
SG + +G D+ + E + AY+ Q D + T+RE
Sbjct: 56 ---SGEILIDGVDLRDLDLESLRKNIAYVPQ-DPFLFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 1e-12
Identities = 61/251 (24%), Positives = 93/251 (37%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HDMGEF 222
I+ V PG +T LLGP SGK+TLL LAG L +G V G H +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRR 71
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R A + Q + +TVR+ +A G P
Sbjct: 72 ARARRVALVEQDSDTAVPLTVRDVVAL------------------------GRIP----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A + + D L L AD + +SGGER+RV +
Sbjct: 103 -HRSLWAGDSPHDAAVVDRALARTELSHLADRDMST-----LSGGERQRVHVARALAQEP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD + + +++ +G V++ L D +++L G+
Sbjct: 157 KLLLLDEPTNHLDVRAQLETLALVRELA--ATGVTVVAALHDLNLAASYCDHVVVLDGGR 214
Query: 403 IVYQGPRELVL 413
+V GP VL
Sbjct: 215 VVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 1e-12
Identities = 47/179 (26%), Positives = 78/179 (43%), Gaps = 26/179 (14%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNIT 901
+ L+ +S G + ++G SGAGK+TL+ +++ R T G +
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQD 69
Query: 902 ISGYPKKQ-ETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
++ + + + G Q N + S TV+E++ + P E+ + +
Sbjct: 70 LTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAF------PLELAGVPKAEIKQR 121
Query: 959 VMELVELKPLIQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
V EL+EL VGL + LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 122 VAELLEL-------VGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
|
Length = 339 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 58/202 (28%), Positives = 81/202 (40%), Gaps = 44/202 (21%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L GLS PG AL+G SG GK+T++ D SG I + G +
Sbjct: 19 LKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGE---------ILLDGVDIRD 69
Query: 910 ---ETFARISGYCEQNDIHSP---FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
G Q P T+ E++ Y P D E +EE +
Sbjct: 70 LNLRWLRSQIGLVSQE----PVLFDGTIAENIRYGK----PDATDEE-----VEEAAKKA 116
Query: 964 ELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
+ I SL VG S LS Q++R+ IA L+ NP I+ +DE TS LDA +
Sbjct: 117 NIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 1017 AIVMRTVRNTVDTGRTVVCTIH 1038
+V + + GRT + H
Sbjct: 176 KLVQEAL-DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 28/170 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN LS PG L ++G +GAGKTT+MDV++G R G + G ++G P+ Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 914 RISGYCE--QNDIHSPFVTVYESLLYSA----------WLRLPPEVDSETRKMFIEEVME 961
R +G Q +TV+E+L + + RL E IEEV+E
Sbjct: 76 R-AGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDR-----IEEVLE 129
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ L L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 130 TIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 65/258 (25%), Positives = 103/258 (39%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L DVS ++PGR LLGP +GK+TL L + G+++ GHD+ P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-APRAA 72
Query: 228 AAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
A + Q +++VR+ L + A G L+R E A I
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARIAEL------ 116
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPAL 343
L LGL A+ D+ +R ++GG R+RV ++ PAL
Sbjct: 117 ------------------LARLGL---AER--ADDKVRELNGGHRRRVEIARALLHRPAL 153
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL---------QPAPETYDLFDD 394
L +DE + GLD ++ I HV + +S+L + D
Sbjct: 154 -LLLDEPTVGLDPASRAAIT----AHVRALARDQGLSVLWATHLVDEIEAD-------DR 201
Query: 395 IILLSDGQIVYQG-PREL 411
+++L G+++ G EL
Sbjct: 202 LVVLHRGRVLADGAAAEL 219
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 60/199 (30%), Positives = 91/199 (45%), Gaps = 26/199 (13%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGGYIT-GNITISGYP--KKQ 909
+L+G+ +PG + A++G SG+GKTTL+ ++ + G I G+ITI +Q
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 910 ETFARI----SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
+ R G+ QN P TV E+++ P V E ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELL-- 129
Query: 966 KPLIQSLVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1021 RTVRNTVDTGRTVVCTIHQ 1039
T+R RT+V H+
Sbjct: 185 NTIRQLAQEKRTMVIVTHE 203
|
Length = 250 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 2e-12
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 16/153 (10%)
Query: 866 PGV-LTALMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQ-ETFARISGYC 919
PG +TA+ G SG+GKTTL+ +++G R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q P ++V +L Y R++ E V+EL+ + L+ L G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---F 912
+LN LS + G +TAL+G +G GK+TL+ + T +G + + P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP--QSGTVFLGDKPISMLSSRQL 74
Query: 913 ARISGYCEQNDIHSPFVTVYESLLY------SAWLRLPPEVDSETRKMFIEEVMELVELK 966
AR Q+ + +TV E + Y S W RL S + + ME +
Sbjct: 75 ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRL-----SAEDNARVNQAMEQTRIN 129
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L + + LS QR+R +A+ L + ++ +DEPT+ LD +MR +R
Sbjct: 130 HLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184
Query: 1027 VDTGRTVVCTIHQPGIDIFDA---FDELFLMKRGG 1058
G+TVV +H D+ A D L ++ G
Sbjct: 185 NTQGKTVVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 75/272 (27%), Positives = 114/272 (41%), Gaps = 59/272 (21%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LKVSGRVTYNG 216
++H IL+D+S I+PGR+T LLG +GK+TLL ALAG L +V+G VT NG
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 217 HDMGEFVPERTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
+ R A A + Q + AFSAR + RY ARR
Sbjct: 71 EPLAAIDAPRLARLRAVLPQ--------AAQPAFAFSAREIVLLGRY----PHARRAGAL 118
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
+ D ++ +A+A G A +VG + + +SGGE RV
Sbjct: 119 THR---DGEIAWQALALAG-------------------ATALVGRD-VTTLSGGELARVQ 155
Query: 334 TGEMM---------VGPALALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVISL 381
++ P L +DE + LD + ++ V L + ++ V+++
Sbjct: 156 FARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNL----GVLAI 211
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
+ D I +L+DG IV G VL
Sbjct: 212 VHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+ +L GLS G + G +G GKTTL+ +L+G R G + N T +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ R Y P ++ E+L + W + IE+ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAA-----IHGGAQRTIEDALAAVGLTGFE 121
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPAAQ-----LSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1030 GRTVVCTIHQP 1040
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 2e-12
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 32/193 (16%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+G+S RPG + AL+G +GAGK+TLM +LSG G I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----EILIDGKP------VA 73
Query: 915 ISGYCEQND-----IH-----SPFVTVYESLLYSAWLRLP-PEVDSETRKMFIE--EVME 961
S + +H P ++V E++ +D + M E++
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLID--RKAMRRRARELLA 131
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
+ L +LVG LS QR+ + IA L + ++ +DEPT+ L + +
Sbjct: 132 RLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFD 186
Query: 1022 TVRNTVDTGRTVV 1034
+R G ++
Sbjct: 187 LIRRLKAQGVAII 199
|
Length = 500 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 70/251 (27%), Positives = 107/251 (42%), Gaps = 51/251 (20%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYN 215
S +K +L D++ I PG + +L GP SGKTT LL L G L S SLKV G+
Sbjct: 15 SLRKQ--VLFDINLEINPGEIVILTGPSGSGKTT-LLTLIGGLRSVQEGSLKVLGQ-ELY 70
Query: 216 GHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
G E V R YI Q N +G +T R Q V EL L+ +E
Sbjct: 71 GASEKELVQLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE- 120
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+A A L+ +GL D + D +SGG+++RV
Sbjct: 121 -----------RARA------------MLEAVGLG---DHL--DYYPHNLSGGQKQRVAI 152
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
+V P L + DE + LDS + +V +++ G ++ ++ D+ D
Sbjct: 153 ARALVHRPKL-VLADEPTAALDSKSGRDVVELMQKLAR-EQGCTIL-IVTHDNRILDVAD 209
Query: 394 DIILLSDGQIV 404
I+ + DG+++
Sbjct: 210 RIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 18/208 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITI-----SGYPKKQET 911
L ++ PG + L G SG+GKTTL+ ++ G ++ G++ + G +K+
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQELYGASEKELV 78
Query: 912 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R + GY Q F+T +++ + L L P + + + ++E V L +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLEAVGLGDHLD 136
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1029
P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+ ++ +
Sbjct: 137 YY---PH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ 191
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ H I D D + M+ G
Sbjct: 192 GCTILIVTHDN--RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 67/267 (25%), Positives = 116/267 (43%), Gaps = 52/267 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-R 226
LK+VS ++ G ++LGP SGK+ LL +AG + SG++ NG D+ PE R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+Y+ Q+ MTV + +A+ + + V +I+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLKKRKV--------------------DKKEIERKVL 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
IA ++LG+ + + +SGGE++RV +V L
Sbjct: 112 EIA--------------EMLGI-----DHLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T ++ LK+ + G V+ + E + L D + ++ +G+++
Sbjct: 153 LDEPFSALDVRTKEKLREELKK-IRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E V FK PK + VA+FL
Sbjct: 212 GKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 58/235 (24%), Positives = 101/235 (42%), Gaps = 41/235 (17%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK 908
+L +S G A++G SG+GK+T++ DV SG I I G +
Sbjct: 16 VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILIDGQDIR 66
Query: 909 ---QETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
++ R G Q ND T+ ++ Y EV + I +
Sbjct: 67 EVTLDSLRRAIGVVPQDTVLFND------TIGYNIRYGRPDATDEEVIEAAKAAQIHD-- 118
Query: 961 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
+++ ++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD +
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLIS 1075
+R V GRT + H+ I +A D++ ++K G + G H +L++
Sbjct: 178 AALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG----RIVERGTHE-ELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 4e-12
Identities = 70/263 (26%), Positives = 111/263 (42%), Gaps = 50/263 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GE 221
LKDV+ I G M ++GP +GK+TLL +L G +D + SG + +NG + G+
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGK 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + R I Q N + ++V E + G S + L L +E++A
Sbjct: 75 ELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRL--GYTSTWRSLFGLFSKEDKAQA---- 128
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ A+ G I D + A T+ SGG+++RV +V
Sbjct: 129 -----LDALERVG-----ILDKAYQR------ASTL---------SGGQQQRVAIARALV 163
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL----FDDI 395
+ DE LD + ++++ LK ++ G VI L DL D I
Sbjct: 164 QQPKIILADEPVASLDPESAKKVMDILKD-INQEDGITVIVNLH----QVDLAKKYADRI 218
Query: 396 ILLSDGQIVYQGP-RELVLEFFE 417
I L G+IV+ GP EL E +
Sbjct: 219 IGLKAGRIVFDGPASELTDEALD 241
|
Length = 258 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 4e-12
Identities = 47/209 (22%), Positives = 77/209 (36%), Gaps = 57/209 (27%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---E 910
+L +S + PG A++G SG+GK+TL ++ G R T G + + G Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG----RVRLDGADISQWDPN 72
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
GY Q+D ++F + E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059
T + H+P + D + +++ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 53/166 (31%), Positives = 77/166 (46%), Gaps = 21/166 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISG--YPKKQET 911
LN +S G ++G SG+GK+TL +L+G + + +G+I + G K+
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 912 --FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
F R Q+ S P TV L S LR S+ R I E+++ V L P
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQR---IAELLDQVGLPP 132
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
L P LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 SF--LDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-12
Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 39/199 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+L VS + PG +LGP SGK+TLL LAG LD G VT +G + +
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 227 TAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+S D H+ + TVRE L + + EL L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLAR---PDATDEELWAALER----VGLADWLR---- 455
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
L DT++G E +SGGER+R+ ++ A
Sbjct: 456 ----------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 345 LFMDEISTGLDSSTTFQIV 363
L +DE + LD+ T +++
Sbjct: 493 LLLDEPTEHLDAETADELL 511
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-12
Identities = 52/211 (24%), Positives = 90/211 (42%), Gaps = 14/211 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFA 913
+L LS PG A++G +GAGKTTL+ +L+G + G +T G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELR 105
Query: 914 RISGYC--EQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ G E ++ TV + +L + A + + E + + ++EL+ K L
Sbjct: 106 KRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLA 165
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--NTV 1027
G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 166 DRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAAS 220
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
++ H +I F L+K G
Sbjct: 221 PGAPALLFVTHHAE-EIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-12
Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 44/240 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
T L D++ I G +LLGP GKTT L +AG + + SGR+ G D+ + P
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPK 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R A + Q+ MTV + +AF + + V P +ID
Sbjct: 71 DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKV--------------------PKDEIDER 110
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
++ +A ++L +E + D + +SGG+R+RV G +V
Sbjct: 111 VREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
MDE + LD+ Q+ LK+ + GT I + E + D I +++DGQI
Sbjct: 152 FLMDEPLSNLDAKLRVQMRAELKR-LQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 56/186 (30%), Positives = 83/186 (44%), Gaps = 12/186 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L +S G L G SGAGK+TL+ ++ G R T G I +S ++ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ P TVYE++ LP V + + V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVA------LPLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1033 VVCTIH 1038
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 7e-12
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
T L D+S ++ G + LLGP +GKTTL+ + G L SG + G D+ +
Sbjct: 11 GKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKDIKKE 67
Query: 223 VPE--RTAAYISQHDNHIGEMTVRETLAFS 250
E R Y+ + + +TVRE L S
Sbjct: 68 PEEVKRRIGYLPEEPSLYENLTVRENLKLS 97
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 65/260 (25%), Positives = 104/260 (40%), Gaps = 63/260 (24%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK+++ I PG ++GP +GK+TLL + ++ S SG + G D+ + +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGK 72
Query: 226 ------RTAAYISQHDNHIGEMTVRET-----LAFSARCQGVGSRYELLTELARRENEAG 274
R I QH N I +TV E L + + + R+
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRF-------------- 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ D K A E + D + AD + SGG+++RV
Sbjct: 119 --SEED-----KERALSALERVGLADKAYQR------ADQL---------SGGQQQRVAI 156
Query: 335 GE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG-TAVISLLQPAPETYDL- 391
+ P L L DE LD T+ Q+++ LK+ ++ G T +I+L Q DL
Sbjct: 157 ARALAQQPDLIL-ADEPIASLDPKTSKQVMDYLKR-INKEDGITVIINLHQ-----VDLA 209
Query: 392 ---FDDIILLSDGQIVYQGP 408
D I+ L G+IV+ G
Sbjct: 210 KKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 7e-12
Identities = 62/190 (32%), Positives = 92/190 (48%), Gaps = 19/190 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-QETFARI 915
L+ +S R G + ALMG +GAGK+TL+ +LSG G+I I G + T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 916 -SG----YCEQNDIH-SPFVTVYESLLYSAWL-RLPPEVDSETRKMFIEEVMELVELKPL 968
+G Y E +H P +TV E+L +L +LP + R++ E E +L+ L
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1029 TGRTVVCTIH 1038
GR ++ H
Sbjct: 189 EGRVILYVSH 198
|
Length = 501 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 68/220 (30%), Positives = 104/220 (47%), Gaps = 22/220 (10%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ET 911
LL+ LS F G +T L+G +G+GK+TL+ +L GR G I + P + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKA 82
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELK 966
FAR Y Q + +TV E + A R P + R+ +EE + LV LK
Sbjct: 83 FARKVAYLPQQLPAAEGMTVRELV---AIGRYPWHGALGRFGAADREK-VEEAISLVGLK 138
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1025
PL L V LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
+ + G TV+ +H I++ + + + RGG+ I G
Sbjct: 194 SQERGLTVIAVLHD--INMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 56/218 (25%), Positives = 83/218 (38%), Gaps = 51/218 (23%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITISG---- 904
E K +L G++ + G + A+MG +G+GK+TL + G Y +T G I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 905 -----------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW--LRLPP 945
YP I G VT L +A R
Sbjct: 72 ELSPDERARAGIFLAFQYP------VEIPG-----------VTN-SDFLRAAMNARRGAR 113
Query: 946 EVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004
+ E K ++E EL+ L ++ V G S ++KR I L+ P + +
Sbjct: 114 GILPEFIK-ELKEKAELLGLDEEFLERYVNE----GFSGGEKKRNEILQLLLLEPKLAIL 168
Query: 1005 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
DEP SGLD A IV + + GR V+ H +
Sbjct: 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 70/286 (24%), Positives = 108/286 (37%), Gaps = 87/286 (30%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGH 217
+ + ++DVS ++PG + ++G SGK+TL LAL G L ++ SG V +G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 218 DMGEFVPE-------RTAAYISQH-----------DNHIGEMTVRETLAFSARCQGVGSR 259
D+ + A I Q + I E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREA------------------ 117
Query: 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
L + +R E +A+ L+ +GL D D
Sbjct: 118 LRLHGKGSRAEARK------------RAVE------------LLEQVGLP---DPERRDR 150
Query: 320 MIRGISGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINS 374
+SGG R+RV M+ ALA L DE +T LD +T QI++ LK
Sbjct: 151 YPHQLSGGMRQRV-----MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQ-REL 204
Query: 375 GTAVISLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
G AV+ + T+DL D ++++ G+IV GP E +L
Sbjct: 205 GMAVLFI------THDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 8e-12
Identities = 60/214 (28%), Positives = 106/214 (49%), Gaps = 27/214 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQE 910
V+L+ +S G +T+++G +GAGK+TL+ ++S + +G ITI G +E
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMS--RLLKKDSGEITIDGLELTSTPSKE 72
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP---PEVDSETRKMFIEEVMELVELKP 967
++S ++N I+S TV + + + R P + E R++ I E +E + L+
Sbjct: 73 LAKKLSILKQENHINSRL-TVRDLVGFG---RFPYSQGRLTKEDRRI-INEAIEYLHLED 127
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
L + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 128 LSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLA 182
Query: 1028 DT-GRTVVCTIHQPGIDIFDA---FDELFLMKRG 1057
D G+T+V +H DI A D + +K G
Sbjct: 183 DELGKTIVVVLH----DINFASCYSDHIVALKNG 212
|
Length = 252 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-12
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 12/186 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFA 913
L+ +S R G L G SGAGKTTL+ +L G T G ++ +Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ P TVYE++ +R E + + R + + V L+ +
Sbjct: 78 RRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRR---VGAALRQVGLEHKADAF 134
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G T
Sbjct: 135 ---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTT 189
Query: 1033 VVCTIH 1038
V+ H
Sbjct: 190 VIVATH 195
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 8e-12
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 11/175 (6%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQND 923
G + L+G +GAGKTT ++ G R G I + IS P I GY Q
Sbjct: 29 GEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI-GYLPQEA 87
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
++VY++L+ A L++ ++ +E R+ E+ME ++ L S+ G S LS
Sbjct: 88 SIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM----GQS-LSG 140
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
+R+R+ IA L ANP I +DEP +G+D + + R + + D+G V+ T H
Sbjct: 141 GERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
|
Length = 241 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-11
Identities = 65/255 (25%), Positives = 114/255 (44%), Gaps = 57/255 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L D++ IK G++T L+G +GK+TLL L G L + G + NG D+ + PE
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ +++SQ+ ++ T+RE + LL + E
Sbjct: 392 AWRKQISWVSQN-PYLFAGTIRENI--------------LLARPDASDEE---------- 426
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A +A + ++ K GL DT++G+ G+SGG+ +R+ ++ PA
Sbjct: 427 --IIAAL---DQAGL-LEFVPKPDGL----DTVIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDIIL 397
L +DE + LD+ T I+ L++ V+ + T+ L D I++
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQALQEL---AKQKTVLVI------THRLEDAADADRIVV 526
Query: 398 LSDGQIVYQG-PREL 411
L +G++V QG EL
Sbjct: 527 LDNGRLVEQGTHEEL 541
|
Length = 559 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 1e-11
Identities = 45/149 (30%), Positives = 78/149 (52%), Gaps = 11/149 (7%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFA-RISGYCEQNDIH 925
G L AL+G SG+GK+TL+ +++G + +G I ++G + R G+ Q+
Sbjct: 26 GSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHARDRKIGFVFQHYAL 83
Query: 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985
+TV +++ + +R P K +EE++ELV+L+ L P + LS Q
Sbjct: 84 FKHLTVRDNIAFGLEIRKHP---KAKIKARVEELLELVQLEGLGDRY---P--NQLSGGQ 135
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
R+R+ +A L P ++ +DEP LDA+
Sbjct: 136 RQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 1e-11
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 18/133 (13%)
Query: 881 TTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS----GYCEQNDIHSPFVTVYESLL 936
+TL+ +++G +G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV 996
+ + EE +E V L + V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 997 ANPSIIFMDEPTS 1009
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 1e-11
Identities = 41/180 (22%), Positives = 65/180 (36%), Gaps = 61/180 (33%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+G+S + R G + AL+G +GAGK+TLM +LSG + G I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDS----GEILVDGKEV------- 64
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
SP + R+ I V +L
Sbjct: 65 --------SFASP---------------------RDARRAGIAMVYQL------------ 83
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
S +R+ + IA L N ++ +DEPT+ L + + +R G V+
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 1e-11
Identities = 59/256 (23%), Positives = 99/256 (38%), Gaps = 61/256 (23%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+ L+ VS ++ G + LLG +GKTTLL + G + SGR+ ++G D+
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLP 71
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
P A AY+ + +TV E LL R ++ + D
Sbjct: 72 PHERARLGIAYVPEGRRIFPRLTVEEN---------------LLLGAYARRDKEAQERDL 116
Query: 280 DIDVYMKAIATEGQEANVITDYY--LKVLGLEVCADTMVGDEMIRG----ISGGERKRVT 333
+ +VY + + LK E +SGGE++ +
Sbjct: 117 E-EVY---------------ELFPRLK--------------ERRNQRAGTLSGGEQQMLA 146
Query: 334 TGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
+M P L L +DE S GL +I +K+ + G ++ + Q A ++
Sbjct: 147 IARALMSRPKL-LLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIA 204
Query: 393 DDIILLSDGQIVYQGP 408
D +L +G+IV G
Sbjct: 205 DRGYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 47/182 (25%), Positives = 86/182 (47%), Gaps = 18/182 (9%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND-IH 925
G + AL+GV+G+GK+TL L G +G I+I G P +Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 926 SPFVTVYESLL------YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
F + E ++ + WLR + D + + + V++ +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQI----VTAALARVDMVEFRHRQIG----- 141
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 1040 PG 1041
G
Sbjct: 202 LG 203
|
Length = 272 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 68/258 (26%), Positives = 105/258 (40%), Gaps = 49/258 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-VPER 226
L DVS I G + LLGP SGKTTLL +AG L+ SG + + G D + V ER
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERP--DSGTILFGGEDATDVPVQER 74
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ QH MTV + +AF R + + R EA I+
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPR----------SERPPEAEIR---------- 114
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
A V LK++ L+ AD +SGG+R+RV + L
Sbjct: 115 --------AKV--HELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKVLL 159
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI--- 403
+DE LD+ ++ L++ +H + + E ++ D +++++ G+I
Sbjct: 160 LDEPFGALDAKVRKELRRWLRR-LHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQV 218
Query: 404 -----VYQGPR-ELVLEF 415
VY P V F
Sbjct: 219 GTPDEVYDHPASPFVYSF 236
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 62/228 (27%), Positives = 102/228 (44%), Gaps = 36/228 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L+ +S G L AL+G SG+GKTTL+ +++G R G I G + P ++
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQE---- 73
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G+ Q+ +TV++++ + LR+ P + +V EL++ LV
Sbjct: 74 RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLK-------LV 124
Query: 974 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
L + + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 125 QLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1029 -TGRTVVCTIHQPGIDIFDAF---DELFLMKRG-------GQEIYVGP 1065
T V H D +A D + +M +G E+Y P
Sbjct: 185 ELHVTTVFVTH----DQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 60/218 (27%), Positives = 94/218 (43%), Gaps = 26/218 (11%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
D +L +S G AL+G SG+GK+TL++++ + +G I I G+ +
Sbjct: 12 GDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDY 69
Query: 911 TFA---RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
T A R G Q D+ TV E++ Y P E +EE
Sbjct: 70 TLASLRRQIGLVSQ-DVFLFNDTVAENIAYGR-----PGATREE----VEEAARAANAHE 119
Query: 968 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
I L +G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V
Sbjct: 120 FIMELPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQ 178
Query: 1021 RTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
+ + RT H+ I +A D + +++ G
Sbjct: 179 AALERLMK-NRTTFVIAHRLST-IENA-DRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 35/248 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
++ +S PG + L+G +GAGKTT ++ G G IT +G P QE RI
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEIKNRI- 74
Query: 917 GYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVG 974
GY E+ ++ P +TV + L Y A L+ P+ + + + E +E+V I+ L
Sbjct: 75 GYLPEERGLY-PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKEL-- 131
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
S ++++ ++ P ++ +DEP SGLD ++ + + G T++
Sbjct: 132 -------SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATII 184
Query: 1035 CTIHQPGIDIFDAFDEL---FLMKRGGQEIYVGPL-------GR-----HSCQLISYFEA 1079
+ H+ + +EL LM + GQ + G + G+ S +
Sbjct: 185 FSSHR-----MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEELAN 239
Query: 1080 IPGVEKIK 1087
IPG+ KI
Sbjct: 240 IPGILKIT 247
|
Length = 300 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETFARISGYCEQNDIHSP 927
++G +G+GK+ L++ ++G + G I N I+ P ++ Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM---ELVELKPLIQSLVGLPGVSGLSTE 984
+TVY+++ Y R + + E + + I E++ L+ KP LS
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPET-----------LSGG 133
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1044
+++R+ IA LV NP I+ +DEP S LD R + ++ V + +
Sbjct: 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEA 193
Query: 1045 FDAFDELFLMKRG 1057
+ D++ +M G
Sbjct: 194 WALADKVAIMLNG 206
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 73/275 (26%), Positives = 118/275 (42%), Gaps = 58/275 (21%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
FE++ F Y +LKDVS I G+ ++GP SGK+T+L L D S
Sbjct: 2 EFENVTFAY-------DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVS 54
Query: 206 LKVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELL 263
SG + +G D+ E ++ IG + ++T+ F+
Sbjct: 55 ---SGSILIDGQDIRE---------VTLDSLRRAIG-VVPQDTVLFNDTI---------- 91
Query: 264 TELARRENEAGIKPDP-DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
N +PD D +V A A + I D K++ DT+VG+ R
Sbjct: 92 -----GYNIRYGRPDATDEEVIEAAKAAQ------IHD---KIMRFPDGYDTIVGE---R 134
Query: 323 G--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
G +SGGE++RV ++ L +DE ++ LD+ T +I L+ ++ G I
Sbjct: 135 GLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD---VSKGRTTIV 191
Query: 381 LLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLE 414
+ + D II+L DG+IV +G EL+ +
Sbjct: 192 IAHRLSTIVNA-DKIIVLKDGRIVERGTHEELLAK 225
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 33/220 (15%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISG----Y 905
D L G++ G + AL+G +GAGK+TL +G + T +G + I G Y
Sbjct: 13 DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT----SGEVLIKGEPIKY 68
Query: 906 PKKQETFARIS-GYCEQN---DIHSPFVTVYESLLYSAW-LRLPPEVDSETR-KMFIEEV 959
KK R + G QN + +P TV E + + L L E + E R K ++ V
Sbjct: 69 DKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKRVKEALKAV 125
Query: 960 -MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
ME E KP P LS Q+KR+ IA L P II +DEPTSGLD A+
Sbjct: 126 GMEGFENKP--------P--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGIDIFDAF-DELFLMKRG 1057
+M+ + + G T++ + H +D+ + D++++M G
Sbjct: 176 IMKLLYDLNKEGITIIISTHD--VDLVPVYADKVYVMSDG 213
|
Length = 275 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (160), Expect = 2e-11
Identities = 64/215 (29%), Positives = 102/215 (47%), Gaps = 26/215 (12%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITG-NITISGYPKKQETFARISGYCEQNDIH 925
G + AL+G SG+GK+TL+ LSG TG G +I + G ++E R++ ++ +
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--GRLARDIRKSRAN 87
Query: 926 SPFV----------TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ ++ +V E++L A P T + + L+ L + VG+
Sbjct: 88 TGYIFQQFNLVNRLSVLENVLIGALGSTPF---WRTCFSWFTREQKQRALQALTR--VGM 142
Query: 976 PG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1029
VS LS Q++R+ IA L+ +I DEP + LD +A IVM T+R+
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064
G TVV T+HQ +D + E + R G Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-11
Identities = 73/282 (25%), Positives = 121/282 (42%), Gaps = 74/282 (26%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F ++ F Y P ++ L +VS I+PG ++G SGK+TLL L G +
Sbjct: 466 FRNVSFAY----PGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT- 518
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G V +G D+ + P R Y+ Q D + T+R+ +A A + E +
Sbjct: 519 --EGSVLLDGVDIRQIDPADLRRNIGYVPQ-DPRLFYGTLRDNIALGAP----YADDEEI 571
Query: 264 TELARRENEAG----IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
A AG ++ PD GL D +G E
Sbjct: 572 LRAAEL---AGVTEFVRRHPD--------------------------GL----DMQIG-E 597
Query: 320 MIRGISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
R +SGG+R+ V ++ P + L +DE ++ +D+ + + + LK+ + +G +
Sbjct: 598 RGRSLSGGQRQAVALARALLRDPPI-LLLDEPTSAMDNRSEERFKDRLKRWL---AGKTL 653
Query: 379 I------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ SLL DL D II++ +G+IV GP++ VLE
Sbjct: 654 VLVTHRTSLL-------DLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 19/158 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
+N +S + L+G +GAGK+TL+ +++G R T +G I G+P ++ +
Sbjct: 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHK 71
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
I E ++ +T E+L L P DS I+EV+ +V+L + G
Sbjct: 72 IGSLIESPPLYEN-LTARENLKVHTTLLGLP--DSR-----IDEVLNIVDL-----TNTG 118
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
S ++RL IA+ L+ +P ++ +DEPT+GLD
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 50/202 (24%), Positives = 92/202 (45%), Gaps = 27/202 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQETF 912
L + G A++G SG+GK+TL+ +L+G G+IT++G +Q
Sbjct: 354 LKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQALR 411
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
IS ++ + S T+ ++L + P+ E + ++ V L+ L++S
Sbjct: 412 ETISVLTQRVHLFSG--TLRDNLRLAN-----PDASDEE----LWAALQQVGLEKLLESA 460
Query: 973 -------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 461 PDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE 519
Query: 1026 TVDTGRTVV-CTIHQPGIDIFD 1046
+ G+T++ T G++ D
Sbjct: 520 HAE-GKTLLMVTHRLRGLERMD 540
|
Length = 573 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 3e-11
Identities = 73/276 (26%), Positives = 112/276 (40%), Gaps = 65/276 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T + D+S IK G LLGP GKTTLL +AG S SG + +G D+ + PE
Sbjct: 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPE 75
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
R + Q H MTV E +AF + + + E+ R EA
Sbjct: 76 KRPIGMVFQSYALFPH------MTVEENVAFGLKVRKKLKK----AEIKARVEEA----- 120
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
L+++GLE AD +SGG+++RV +
Sbjct: 121 ------------------------LELVGLEGFADRKPHQ-----LSGGQQQRVALARAL 151
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
V L +DE + LD+ Q+ LK+ + G + + E + D I ++
Sbjct: 152 VPEPKVLLLDEPLSALDAKLREQMRKELKE-LQRELGITFVYVTHDQEEALAMSDRIAVM 210
Query: 399 SDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
+DG+I G P E+ ++ P + VADF+
Sbjct: 211 NDGRIEQVGTPEEI---------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 60/260 (23%), Positives = 99/260 (38%), Gaps = 61/260 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHD---MGE 221
LKD+S I G +T L+GP GK+TLL L L G V +G D +
Sbjct: 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74
Query: 222 FVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
V E R + Q N ++ + +A+ R G+ + EL R EA
Sbjct: 75 DVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLK----EELDERVEEA------ 123
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGL--EVCADTMVGDEMIRGISGGERKRVTTGE- 336
L+ L EV G+SGG+++R+
Sbjct: 124 -----------------------LRKAALWDEVKDRLHA-----LGLSGGQQQRLCLARA 155
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLF 392
+ P + L +DE ++ LD +T +I + + + ++ ++ Q A +
Sbjct: 156 LANEPEV-LLLDEPTSALDPISTAKIEELIAE---LKKEYTIVIVTHNMQQAA----RVA 207
Query: 393 DDIILLSDGQIVYQGPRELV 412
D L +G++V GP E +
Sbjct: 208 DRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 66/279 (23%), Positives = 100/279 (35%), Gaps = 81/279 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL V + G + +LG SGK+TLL + G L G + +G D+ + E
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGEILIDGEDIPQLSEE 78
Query: 226 RTAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ Q +TV E +AF R E P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAFPLR-------------------EHTKLPES 119
Query: 280 DID--VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
I V MK L+++GL D +SGG RKRV
Sbjct: 120 LIRELVLMK----------------LELVGL----RGAAADLYPSELSGGMRKRV----- 154
Query: 338 MVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAP 386
ALA LF+DE ++GLD + I ++ +N G VI +
Sbjct: 155 ----ALARAIALDPELLFLDEPTSGLDPISAGVIDELIR---ELNDALGLTVIMVTHDLD 207
Query: 387 ETYDLFDDIILLSDGQIVYQGPRE--------LVLEFFE 417
+ D + +L+DG+++ +G E V +FF
Sbjct: 208 SLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQFFN 246
|
Length = 263 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-11
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 25/166 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L +S + + G L+G SG GKTTL+ +++G R+T G I G I+ P ++ +
Sbjct: 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDY- 78
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
G Q+ P +TV +++ Y + R M EV E V + LV
Sbjct: 79 ---GIVFQSYALFPNLTVADNIAYGL----------KNRGMGRAEVAERVAE---LLDLV 122
Query: 974 GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 123 GLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 64.4 bits (158), Expect = 4e-11
Identities = 64/259 (24%), Positives = 109/259 (42%), Gaps = 60/259 (23%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-GEFV 223
L L DVS ++PG + L+GP +GKTTL ++G L + SG V ++G D+ G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 224 PERTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
E I Q E+TV E + +A+ + + LL ARRE
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREER-------- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
EA + L+ +GL AD G+ +S G+++R+ E
Sbjct: 119 -------------EARERAEELLERVGLADLADRPAGE-----LSYGQQRRL---EIARA 157
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVI------SLLQPAPETY 389
+ P L L +DE + GL+ T ++ +++ + G V+ ++
Sbjct: 158 LATDPKL-LLLDEPAAGLNPEETEELAELIRE---LRERGITVLLVEHDMDVV------M 207
Query: 390 DLFDDIILLSDGQIVYQGP 408
L D + +L G+++ +G
Sbjct: 208 SLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 4e-11
Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 38/216 (17%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGY-P-KKQETFARISGYCEQ 921
G + +G +GAGK+T + +L+G T G + ++G P +++E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR----VNGKDPFRRREEYLRSIGLV-- 102
Query: 922 NDIHSPFVTVYESLLYSAW----------LRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ L W L+L E+ + ++ + E+++L+ ++
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1030
V LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 -----PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQ 207
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066
TV+ T H DI D + L+ + GQ ++ G L
Sbjct: 208 ATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 4e-11
Identities = 57/209 (27%), Positives = 91/209 (43%), Gaps = 18/209 (8%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFA 913
+L+ LS G L AL+G SG GKTTL+ ++G +TG I I+
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHK 78
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R QN P + V +++ + + P+ D R + + ++LV L
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAER---VADALKLVGLGDAAAH-- 133
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GR 1031
LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 134 -LP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 1032 TVVCTIHQPGIDIFDAF---DELFLMKRG 1057
T++C H D DA D+ +MK G
Sbjct: 191 TILCVTH----DQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 4e-11
Identities = 74/318 (23%), Positives = 130/318 (40%), Gaps = 71/318 (22%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---- 202
F+ + F Y P KK L D+S I G T L+G SGK+T+ + G L
Sbjct: 8 FKHVSFTY----PDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD 61
Query: 203 --DSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRY 260
+S + V G +T + + + E+ DN TV + +AF + V R
Sbjct: 62 NPNSKITVDG-ITLTAKTVWD-IREKVGIVFQNPDNQFVGATVGDDVAFGLENRAV-PRP 118
Query: 261 ELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320
E++ + + G+ DY D
Sbjct: 119 EMIKIVRDVLADVGM-----------------------LDYI---------------DSE 140
Query: 321 IRGISGGERKRVT-TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
+SGG+++RV G + V P + + +DE ++ LD + QI+ ++ + + VI
Sbjct: 141 PANLSGGQKQRVAIAGILAVEPKI-IILDESTSMLDPAGKEQILKLIR-KLKKKNNLTVI 198
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV--LEFFESMGFKCP---------KRK 427
S+ E ++ D +++L DG+++ QG P E+ +E + +G P K K
Sbjct: 199 SITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEK 257
Query: 428 GVADFLQEVTSRKDQKQY 445
G++ QE+ + + QY
Sbjct: 258 GIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 5e-11
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 63/252 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--- 224
L +VS I+ G ++G SGK+TLL LAG + SG V +G D+ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP----DPD 280
R Y+ Q D + T+R+ + A + +L A AG+ P+
Sbjct: 77 RRNIGYVPQ-DVTLFYGTLRDNITLGA---PLADDERIL-RAAEL---AGVTDFVNKHPN 128
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
GL D +G E RG+SGG+R+ V ++
Sbjct: 129 --------------------------GL----DLQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDI 395
L +DE ++ +D ++ ++ L+Q + T +I SLL DL D I
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQ--LLGDKTLIIITHRPSLL-------DLVDRI 208
Query: 396 ILLSDGQIVYQG 407
I++ G+IV G
Sbjct: 209 IVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 5e-11
Identities = 69/278 (24%), Positives = 119/278 (42%), Gaps = 66/278 (23%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F Y PSR ILK +S I PG+ L+G GK+T++ L D +
Sbjct: 2 EFKNVSFRY----PSRPDV-PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT 56
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SG + +G D+ + +SQ + + + T+ E + +
Sbjct: 57 ---SGEILLDGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRYG------------ 100
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
KPD + +A +AN I D+ ++ L DT+VG+ R
Sbjct: 101 -------------KPDATDEEVEEAAK----KAN-IHDF---IMSLPDGYDTLVGE---R 136
Query: 323 G--ISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G +SGG+++R+ ++ P + L +DE ++ LD+ + + L + T VI
Sbjct: 137 GSQLSGGQKQRIAIARALLRNPKI-LLLDEATSALDAESEKLVQEALDR-AMKGRTTIVI 194
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG-PRELV 412
S ++ A D I +L +GQ+V QG EL+
Sbjct: 195 AHRLSTIRNA-------DLIAVLQNGQVVEQGTHDELM 225
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 72/266 (27%), Positives = 107/266 (40%), Gaps = 46/266 (17%)
Query: 149 EDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV 208
E + + R IL D+S + PG ++GP +GKTTLL L G+ S
Sbjct: 29 EPLIELKNVSVRRNGK-KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--- 84
Query: 209 SGRVTYNGHDMG--EFVPE--RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SG VT G G E + E + +S H+ TVR+ + S +G E
Sbjct: 85 SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVL-SGFFASIGIYQED 143
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
LT A A L++LG + AD G
Sbjct: 144 LTAE------------------DLAAAQW----------LLELLGAKHLADRPFGS---- 171
Query: 323 GISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
+S GE++RV +V P L L +DE + GLD Q++N L++ A++ +
Sbjct: 172 -LSQGEQRRVLIARALVKDPEL-LILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFV 229
Query: 382 LQPAPETYDLFDDIILLSDGQIVYQG 407
A E F +LL +G++V QG
Sbjct: 230 THHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 5e-11
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 12/158 (7%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
L +S G L ++G SG GKTTL+++++G T G+I ++G + R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
G QN+ P++ V +++ + LR ++ R+ +++ LV L+ +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
LS R+R+ IA L P ++ +DEP LDA
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 6e-11
Identities = 66/252 (26%), Positives = 101/252 (40%), Gaps = 47/252 (18%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
+L+D+S I PG ++G SGK+TLL L G GR+ +G D+ +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS 544
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD-PDID 282
R Y+ Q D + ++RE +A P+ D +
Sbjct: 545 LRRQVGYVLQ-DPFLFSGSIRENIALGN-------------------------PEATDEE 578
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A E + L + DT VG E +SGG+R+R+ ++
Sbjct: 579 IIEAAQLAGAHEF---------IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD T I+ L Q I G VI ++ T D II+L G+
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ---ILQGRTVI-IIAHRLSTIRSADRIIVLDQGK 684
Query: 403 IVYQGPRELVLE 414
IV QG E +L
Sbjct: 685 IVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 6e-11
Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 64/271 (23%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F+++ F Y +L+D+S I G L+GP SGK+TL+ + D
Sbjct: 2 EFKNVTFRY------PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVD 55
Query: 206 LKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
SGR+ +GHD+ ++ R +SQ D + TV E +A+
Sbjct: 56 ---SGRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRP---------- 101
Query: 263 LTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322
R E E + A A E I + L DT++G+ R
Sbjct: 102 --GATREEVEEAAR---------AANAHE-----FIME-------LPEGYDTVIGE---R 135
Query: 323 GI--SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI- 379
G+ SGG+R+R+ ++ L +DE ++ LD+ + + L + + N T VI
Sbjct: 136 GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAAL-ERLMKNRTTFVIA 194
Query: 380 ---SLLQPAPETYDLFDDIILLSDGQIVYQG 407
S ++ A D I++L DG+IV +G
Sbjct: 195 HRLSTIENA-------DRIVVLEDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-11
Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 48/236 (20%)
Query: 177 PGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYIS 232
+T + G +GK+TLL +AG K D V +P +R +
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEG 292
Q + VRE LAF + + + EL
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDEL-------------------------- 115
Query: 293 QEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG-PALALFMDEIS 351
L +LGL+ + + +SGGE++RV + P L L +DE
Sbjct: 116 ----------LDLLGLD-----HLLNRYPAQLSGGEKQRVALARALAAQPEL-LLLDEPF 159
Query: 352 TGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ LD + Q++ LKQ + N VI + E L D I+++ DG++ Y G
Sbjct: 160 SALDRALRLQLLPELKQ-IKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 7e-11
Identities = 60/259 (23%), Positives = 106/259 (40%), Gaps = 97/259 (37%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
LKD++ + G + ++GP SGK++LL AL G+L+ K+SG V+ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG---------- 66
Query: 227 TAAYISQ---HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP---DPD 280
+ AY+SQ N T+RE + F G ++ R + IK +PD
Sbjct: 67 SIAYVSQEPWIQN----GTIRENILF-------GKPFD-----EERYEKV-IKACALEPD 109
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI--SGGERKRVTTGEMM 338
+++ TE +G+ +GI SGG+++R+
Sbjct: 110 LEILPDGDLTE------------------------IGE---KGINLSGGQKQRI------ 136
Query: 339 VGPALA---------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAV-----ISLLQ 383
+LA +D+ + +D+ I NC+ + +N+ T + + LL
Sbjct: 137 ---SLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL-LNNKTRILVTHQLQLLP 192
Query: 384 PAPETYDLFDDIILLSDGQ 402
A D I++L +G+
Sbjct: 193 HA-------DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-11
Identities = 65/253 (25%), Positives = 106/253 (41%), Gaps = 36/253 (14%)
Query: 815 PKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 874
M LP P E + + Q+ +L G+S A + G ++G
Sbjct: 321 AAAERMPLP-APQGALSVERLTAAPPGQKK----------PILKGISFALQAGEALGIIG 369
Query: 875 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 931
SG+GK+TL +L G +G++ + G +Q E R GY Q D+ T+
Sbjct: 370 PSGSGKSTLARLLVGIWP--PTSGSVRLDGADLRQWDREQLGRHIGYLPQ-DVELFDGTI 426
Query: 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTE 984
E++ R E D E + E L + LI L +G G + LS
Sbjct: 427 AENIA-----RFGEEADPEK----VIEAARLAGVHELILRLPQGYDTRIG-EGGATLSGG 476
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1044
QR+R+ +A L +P ++ +DEP S LD+ A + + G TVV H+P
Sbjct: 477 QRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--A 534
Query: 1045 FDAFDELFLMKRG 1057
+ D++ +++ G
Sbjct: 535 LASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-11
Identities = 54/182 (29%), Positives = 82/182 (45%), Gaps = 29/182 (15%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
L+ S +PG AL+G SG+GK+T+ +++G + G I G P+++
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 914 RISG---YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSE--TRKMFIEEVMELVELKPL 968
++ +Q DI TV ++L + W P+ D + I +V
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV--------- 597
Query: 969 IQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
I S G G + LS QR+RL IA LV NPSI+ +DE TS LD I+
Sbjct: 598 ITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDN 657
Query: 1023 VR 1024
+R
Sbjct: 658 LR 659
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 8e-11
Identities = 54/192 (28%), Positives = 83/192 (43%), Gaps = 24/192 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT---GNITISGYPKKQET 911
L G+S G + AL+G +GAGKTTL+ + G R G I +IT
Sbjct: 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDIT------GLPP 72
Query: 912 FARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKP 967
R Y + P +TV E+LL A+ R D E ++ +EEV EL LK
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYELFPRLKE 128
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 129 RRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELR 183
Query: 1028 DTGRTVVCTIHQ 1039
G + + Q
Sbjct: 184 KEGGMTILLVEQ 195
|
Length = 237 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 54/219 (24%), Positives = 93/219 (42%), Gaps = 30/219 (13%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETF 912
+L G+S + G + A++G SG+GK+TL+ +L G +G + +G + +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSS 74
Query: 913 ARISGYCEQNDIHSPFV----------TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+ + + F+ T E++ + +++ R E++E
Sbjct: 75 NERA---KLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEK 128
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1019
V L+ I P S LS +R+R+ IA LV PS++ DEPT LD A I+
Sbjct: 129 VGLEHRINHR---P--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058
M + ++T VV H + D + MK G
Sbjct: 184 MLELNRELNTSFLVV--THDLE--LAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 8e-11
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 32/187 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTL------MDVLSGRKTGGYITGNITISG---YPK 907
LN +S F P +TAL+G SG+GK+TL M+ L+ T ITG+I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 908 KQETF---ARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
+ +T I +Q + PF +++YE+++Y LRL D + +E+ ++
Sbjct: 78 RTDTVDLRKEIGMVFQQPN---PFPMSIYENVVYG--LRLKGIKDKQVLDEAVEKSLKGA 132
Query: 964 ----ELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
E+K L S +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 133 SIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISAGK 186
Query: 1019 VMRTVRN 1025
+ T+
Sbjct: 187 IEETLLG 193
|
Length = 252 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (155), Expect = 8e-11
Identities = 55/186 (29%), Positives = 86/186 (46%), Gaps = 13/186 (6%)
Query: 864 FRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISG---YPKKQETFA--RI 915
+ G + AL+G SG GKTT + ++ G +TG I + G Y + + A R
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRR 86
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
G Q P ++V+++++ A L+L D + E + L ++ +
Sbjct: 87 VGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKT 144
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--MRTVRNTVDTGRTV 1033
P +GLS Q++RL IA L P I+ MDEPTS LD + A + + T V T V
Sbjct: 145 PA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIV 203
Query: 1034 VCTIHQ 1039
+HQ
Sbjct: 204 THNMHQ 209
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 47/164 (28%), Positives = 83/164 (50%), Gaps = 24/164 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYPKKQETFA 913
L+ +S + G + +G +GAGK+T M +++G Y+ +G++ + G Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 914 --RISGYCEQNDIHSPF---VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R GY + H+P + V E L + A + + + K +EE++ELV L+P
Sbjct: 73 VQRNIGYLPE---HNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPE 126
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+G LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 127 QHKKIG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 50/161 (31%), Positives = 73/161 (45%), Gaps = 22/161 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFA 913
L G+S G +T ++G +G GKTTL+ L G K+G I+ P
Sbjct: 16 LRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----PHE 71
Query: 914 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R Y Q P +TV E+LL R I + E+ EL P+++
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLLTGLAAL-------PRRSRKIPD--EIYELFPVLK 122
Query: 971 SLVGLPGVSG-LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
++G G G LS Q+++L IA LV P ++ +DEPT G
Sbjct: 123 EMLGRRG--GDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 51/247 (20%), Positives = 95/247 (38%), Gaps = 46/247 (18%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
HL + D++ + G + +LGP +GK+TLL +AG SG + NG D
Sbjct: 12 GHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTAS 66
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
P ER + + Q +N +TV + + G+ P
Sbjct: 67 PPAERPVSMLFQENNLFAHLTVAQNIGL------------------------GLSPG--- 99
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+K A + ++ +GL + +SGG+R+RV +V
Sbjct: 100 ---LKLNAEQREKVEAA----AAQVGLAGF-----LKRLPGELSGGQRQRVALARCLVRE 147
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + LD + +++ + Q + ++ + + + D ++ L +G
Sbjct: 148 QPILLLDEPFSALDPALRAEMLALVSQ-LCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
Query: 402 QIVYQGP 408
+I QG
Sbjct: 207 RIAAQGS 213
|
Length = 231 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 55/201 (27%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY------P 906
K+ L +S + G + ++G SGAGK+TL+ ++G + +G++ + G
Sbjct: 17 KVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSG 74
Query: 907 KKQETFARISGYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
K+ R G Q N + S TV+E++ P E+ + E V+EL+E
Sbjct: 75 KELRKARRRIGMIFQHFNLLSSR--TVFENVAL------PLEIAGVPKAEIEERVLELLE 126
Query: 965 LKPLIQSLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L VGL + LS Q++R+ IA L NP ++ DE TS LD +
Sbjct: 127 L-------VGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSI 179
Query: 1020 MRTVRNT-VDTGRTVVCTIHQ 1039
+ +R+ + G T+V H+
Sbjct: 180 LALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 20/190 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+N +S G + L+G +GAGKTT ++ G R G I + I+ P + A
Sbjct: 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR--A 77
Query: 914 RIS-GYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSET--RKMFIEEVMELVELKPL 968
R+ GY Q S F +TV ++++ +R E D + RK ++ ++E + L
Sbjct: 78 RLGIGYLPQE--ASIFRKLTVEDNIMAVLEIR---EKDLKKAERKEELDALLEEFHITHL 132
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
S S LS +R+R+ IA L ANP I +DEP +G+D A + R +++ D
Sbjct: 133 RDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD 187
Query: 1029 TGRTVVCTIH 1038
G V+ T H
Sbjct: 188 RGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
R T L +VS +K G + L+GP SGK+TLL A+AG L + SG + +G D+
Sbjct: 8 RYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIA 64
Query: 221 EFVPE---RTAAYISQ 233
+ E R Y+ Q
Sbjct: 65 KLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-10
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ +S + G +L GP SGKTTLL +AG L +G + +G D+ +
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTIKLDGGDIDDPDVA 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQG 255
Y+ + +TV E L F A G
Sbjct: 73 EACHYLGHRNAMKPALTVAENLEFWAAFLG 102
|
Length = 207 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 64/263 (24%), Positives = 113/263 (42%), Gaps = 66/263 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L DVS I G +T ++GP +GK+T LL++ +L K SG +T +G ++ +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKST-LLSMMSRLLK--KDSGEITIDGLELTSTPSK 71
Query: 226 RTAAYIS--QHDNHIG-EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A +S + +NHI +TVR+ + F R+ P
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF--------GRF----------------P----- 102
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
Y + T+ E I + ++ L LE + D + +SGG+R+R +
Sbjct: 103 -YSQGRLTK--EDRRIINEAIEYLHLE-----DLSDRYLDELSGGQRQRA-----FIAMV 149
Query: 343 LA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------ 391
LA + +DE LD + QI+ L++ T V+ L +D+
Sbjct: 150 LAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-------HDINFASCY 202
Query: 392 FDDIILLSDGQIVYQGPRELVLE 414
D I+ L +G++V QG + +++
Sbjct: 203 SDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 45/164 (27%), Positives = 72/164 (43%), Gaps = 19/164 (11%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISG-----YPKKQ 909
LL ++ G + LMG SG GK+TL+ + G G + TG + ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R G Q+ + P ++V ++LL++ LP + R+ +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQD---P--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 60/220 (27%), Positives = 97/220 (44%), Gaps = 32/220 (14%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ- 909
D +L+ L+ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVME------ 961
R G V + E++L+S +R + E V+
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAG 571
Query: 962 ----LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ EL + VG G LS QR+R+ IA LV NP I+ DE TS LD + A
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 1018 IVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++MR +R + GRTV+ H+ + A D + ++++G
Sbjct: 631 LIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 2e-10
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 11/164 (6%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-E 910
V L+G+S + G L+G SG GKTTL+ +++G +T +G I + G
Sbjct: 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT--SGEILLDGKDITNLP 68
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R QN P +TV+E++ + LRL ++ K + E ++LV+L+
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFG--LRLK-KLPKAEIKERVAEALDLVQLEGYAN 125
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 126 RKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 2e-10
Identities = 50/173 (28%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 847 QGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906
QG E +L +L G+ + G AL+G SG+GK+TL+ +L+G G +G +++ G P
Sbjct: 18 QG--EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVGQP 73
Query: 907 -------KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV 959
+ + A+ G+ Q+ + P + E++ A LR E ++R
Sbjct: 74 LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR----NGA 127
Query: 960 MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L+E L + L LP + LS +++R+ +A P ++F DEPT LD
Sbjct: 128 KALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-10
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 41/194 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L+ VS + PG L+GP +GK+TLL L G +D + G + NG + + +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
A++ QH + T+ E + LAR +
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIR-----------------LARPD-------------- 422
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
A E +EA V L DT +G+ G+SGG+ +R+ + A
Sbjct: 423 --ASDAEIREALERAGLDEFVAALPQGLDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 345 LFMDEISTGLDSST 358
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-10
Identities = 64/252 (25%), Positives = 98/252 (38%), Gaps = 56/252 (22%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
++ VS ++ G + LLGP +GKTT + L L + SGR T GHD+ V E
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDV---VREPR 69
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + Q + E+T E L AR GV E R +E
Sbjct: 70 EVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-----ERRERIDEL--------- 115
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
L +GL D +++ SGG R+R+ +V
Sbjct: 116 --------------------LDFVGL-----LEAADRLVKTYSGGMRRRLEIARSLVHRP 150
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETYDLFDDIILLSD 400
LF+DE + GLD T + +++ + + LL E L D + ++
Sbjct: 151 EVLFLDEPTIGLDPQTRAHVWEYIEK---LKEEFGMTILLTTHYMEEAEQLCDRVAIIDH 207
Query: 401 GQIVYQG-PREL 411
G+I+ +G P EL
Sbjct: 208 GRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-10
Identities = 73/287 (25%), Positives = 105/287 (36%), Gaps = 88/287 (30%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
G+ + + + DVS ++ G L+G SGK+TL LAG L S SG + ++
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 216 GHDM----GEFVP-ERTAAYISQH-----DNHIGEMTVRETLAFSARCQGVGSRYELLTE 265
G D+ GE R + Q + MTV + LA R G GS E
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGDILAEPLRIHGGGSGAE---- 404
Query: 266 LARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325
RR + ++ V D +S
Sbjct: 405 --RRAR---------VAELLE----------------------LVGLPPEFLDRYPHELS 431
Query: 326 GGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
GG+R+RV + ALA L +DE + LD S Q++N LK
Sbjct: 432 GGQRQRVA-----IARALALEPKLLILDEPVSALDVSVQAQVLNLLKD------------ 474
Query: 381 LLQPAPETYDLF------------DDIILLSDGQIVYQGPRELVLEF 415
L + TY LF D + ++ DG+IV +GP E V E
Sbjct: 475 LQEELGLTY-LFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 63/228 (27%), Positives = 92/228 (40%), Gaps = 57/228 (25%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGRKTGGYITGNITISGYPKK 908
+N L+ G L+G SG+GKTT M ++ SG I I G +
Sbjct: 16 AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE---------IFIDGEDIR 66
Query: 909 QET---FARISGYCEQNDIHSPFVTVYE------SLLYSAWLRLPPEVDSETRKMFIEEV 959
++ R GY Q P +TV E LL W + E + +E+
Sbjct: 67 EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADEL 117
Query: 960 MELVELKPLIQSLVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
+ LV L P P LS Q++R+ +A L A+P ++ MDEP LD
Sbjct: 118 LALVGLDP--AEFADRYP--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP----- 168
Query: 1019 VMRT------VRNTVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ R R + G+T+V H DI +AF D + +MK G
Sbjct: 169 ITRDQLQEEFKRLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 3e-10
Identities = 56/206 (27%), Positives = 93/206 (45%), Gaps = 13/206 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L GL+ F +T L+G +G GK+TL LSG R G + Y K+
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLAL 75
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R Q+ F T +S + + L TR+ ++E + LV+ +
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR--VDEALTLVDAQHFRHQ- 132
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 133 ----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNH 188
Query: 1033 VVCTIHQPGID-IFDAFDELFLMKRG 1057
V+ + H ID I++ D ++++++G
Sbjct: 189 VIISSHD--IDLIYEISDAVYVLRQG 212
|
Length = 271 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-10
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 17/147 (11%)
Query: 872 LMGVSGAGKTTLMDVLSG--RKTGG--YITGNITISGYPKKQETFARISGYCEQNDIHSP 927
L+G SG GKTT + +++G T G YI G PK R QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYALYP 85
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987
+TVY+++ + LR P+ + + R + EV EL++++ L+ LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 988 RLTIAVELVANPSIIFMDEPTSGLDAR 1014
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 6e-10
Identities = 66/264 (25%), Positives = 110/264 (41%), Gaps = 55/264 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
LT + DVS ++PG + L+GP +GKTTL + G S SG V + G D+ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R A I+ Q +TV E +A A + G L AR+E
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENVAVGAHARL-GLSGLLGRPRARKE---------- 122
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
+ +E L+ +GL AD G+ +S G+++R+ E
Sbjct: 123 ----EREARERAREL-------LEFVGLGELADRPAGN-----LSYGQQRRL---EIARA 163
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV------ISLLQPAPETYD 390
+ P L L +DE + GL+ T ++ +++ + G + + L+
Sbjct: 164 LATQPKL-LLLDEPAAGLNPEETEELAELIRE-LRDRGGVTILLIEHDMKLV------MG 215
Query: 391 LFDDIILLSDGQIVYQGPRELVLE 414
L D I++L+ G+++ +G E V
Sbjct: 216 LADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 6e-10
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 73/292 (25%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+T L DVS I G + ++G +GK+TLL + L+ SG V +G D+
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINL-LERP--TSGSVFVDGQDLT 71
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
+ I QH N + TV E +AF GV E+ +R E
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPK-----AEIKQRVAEL- 125
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
L+++GL AD +SGG+++RV
Sbjct: 126 ----------------------------LELVGLSDKADR-----YPAQLSGGQKQRVA- 151
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINS--GTAVISLLQPAPE 387
+ ALA L DE ++ LD TT I+ LK IN G ++ L+ E
Sbjct: 152 ----IARALANNPKILLCDEATSALDPETTQSILELLKD---INRELGLTIV-LITHEME 203
Query: 388 -TYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTS 438
+ D + +L G++V +G V E F + PK +F+ E
Sbjct: 204 VVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLE 247
|
Length = 339 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 6e-10
Identities = 58/271 (21%), Positives = 107/271 (39%), Gaps = 53/271 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
T+L D+S I+ G + L+G GKTTLL A+AG + ++ ++GR+ D+ P
Sbjct: 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPH 77
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R A + Q+ + V + +AF R Q + ++A R +A
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAERVADA----------- 121
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
LK++GL + +SGG ++R+ +
Sbjct: 122 ------------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDV 158
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQ-HVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LD++ + + H + T ++ + + L D ++ DG++
Sbjct: 159 LLLDEPLSALDANIRANMREEIAALHEELPELT-ILCVTHDQDDALTLADKAGIMKDGRL 217
Query: 404 VYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P+ L + P A+FL
Sbjct: 218 AAHGEPQAL---------YDAPADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-10
Identities = 67/237 (28%), Positives = 101/237 (42%), Gaps = 54/237 (22%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGY-- 905
+LNG+S G A++G SGAGK+T++ DV SG ITI G
Sbjct: 277 PILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS---------ITIDGQDI 327
Query: 906 -PKKQETFARISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV 959
Q++ R G Q ND T+ ++ Y P+ +E +
Sbjct: 328 RDVTQQSLRRAIGIVPQDTVLFND------TIAYNIKYGR-----PDATAEE----VGAA 372
Query: 960 MELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
E ++ IQSL VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 373 AEAAQIHDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALD 431
Query: 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1069
+ +R V GRT + H+ I DA DE+ ++ G + G H
Sbjct: 432 THTEQAIQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG----RIVERGTH 481
|
Length = 497 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 6e-10
Identities = 80/325 (24%), Positives = 123/325 (37%), Gaps = 71/325 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFV 223
++ ++ I G LLGP GKTT+L +AG D SGR+ +G D+
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD-----SGRIMLDGQDITHVP 82
Query: 224 PE-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E R + Q MTV E +AF R Q + E+ R EA
Sbjct: 83 AENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPRVMEA--------- 128
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
L+++ LE A +SGG+++RV +V
Sbjct: 129 --------------------LRMVQLEEFA-----QRKPHQLSGGQQQRVAIARAVVNKP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + LD Q+ N LK + G + + E + D I+++ DG+
Sbjct: 164 KVLLLDESLSALDYKLRKQMQNELKA-LQRKLGITFVFVTHDQEEALTMSDRIVVMRDGR 222
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE-------VTSRKDQKQYWTHKEKPYR 454
I G PRE+ ++ PK VA F+ E V R D+++ + E
Sbjct: 223 IEQDGTPREI---------YEEPKNLFVARFIGEINIFDATVIERLDEQRVRANVEGREC 273
Query: 455 FVTVEEFAEAFQSFHVGQKISDELR 479
+ V + GQK+ LR
Sbjct: 274 NIYVN------FAVEPGQKLHVLLR 292
|
Length = 375 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 7e-10
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 31/222 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
++ ++ G L+G SG+GKTT + +++ T G I IS
Sbjct: 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLD---PVEL 73
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPLI 969
R GY Q P +TV E++ P+ D E K +E+++LV L P
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIA------TVPKLLGWDKERIKKRADELLDLVGLDP-S 126
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNT 1026
+ P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 127 EYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE 184
Query: 1027 VDTGRTVVCTIHQPGIDIFDAF---DELFLMKRGGQEIYVGP 1065
G+T+V H DI +A D + +M G Y P
Sbjct: 185 --LGKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 24/207 (11%)
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904
K G E +L +L G+ + G A++G SG+GK+TL+ VL+G +G + + G
Sbjct: 14 KTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLG 71
Query: 905 YP---KKQETFARIS----GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIE 957
P ++ A + G+ Q+ P +T E++ LP E+ E+
Sbjct: 72 QPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRA 125
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD----A 1013
L+E L + L P LS +++R+ +A P ++F DEPT LD
Sbjct: 126 GAKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183
Query: 1014 RAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
+ A ++ R + G T+V H P
Sbjct: 184 KIADLLFALNR---ERGTTLVLVTHDP 207
|
Length = 228 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 8e-10
Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 53/184 (28%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 906
L ++ +TAL+G SG GK+TL+ D++ G + + G + + G Y
Sbjct: 23 LKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNIYD 78
Query: 907 KKQETFA---RISGYCEQ--NDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
K + R+ G Q N PF ++Y+++ Y LRL D E +
Sbjct: 79 PKVDVVELRRRV-GMVFQKPN----PFPMSIYDNVAYG--LRLHGIKDKE--------LD 123
Query: 961 ELVELKPLIQSL--VGL----------PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
E+VE SL L + GLS Q++RL IA L P ++ MDEPT
Sbjct: 124 EIVE-----SSLKKAALWDEVKDRLHKSAL-GLSGGQQQRLCIARALAVKPEVLLMDEPT 177
Query: 1009 SGLD 1012
S LD
Sbjct: 178 SALD 181
|
Length = 253 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 9e-10
Identities = 57/246 (23%), Positives = 101/246 (41%), Gaps = 49/246 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+DVS +KPG ++GP +GK+TLL A+ G L + SG + G + +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEKER-- 67
Query: 226 RTAAYISQHDNHIGEM--TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ Y+ Q + + +VR+ + G+ L L++ +
Sbjct: 68 KRIGYVPQRRSIDRDFPISVRDVVLM-----GLYGHKGLFRRLSKAD------------- 109
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
KA E L+ +GL + + D I +SGG+++RV +V
Sbjct: 110 --KAKVDEA----------LERVGL-----SELADRQIGELSGGQQQRVLLARALVQDPD 152
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL--LQPAPETYDLFDDIILLSDG 401
L +DE G+D T I L++ + T ++ L + FD ++LL +
Sbjct: 153 LLLLDEPFAGVDPKTQEDIYELLRE-LRREGMTILVVTHDLGLVL---EYFDRVLLL-NR 207
Query: 402 QIVYQG 407
+V G
Sbjct: 208 TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 9e-10
Identities = 62/248 (25%), Positives = 99/248 (39%), Gaps = 62/248 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L ++ I G L+GP +GK+TLL + + L SG + NG D+ + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 228 AAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Y+ + D + + V E +AF+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKRVPAA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+++GL + +SGGE++RV +V
Sbjct: 121 ----------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAIVN 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYDLFDD----I 395
L DE + LD TT++I+N LK+ IN +GT V+ A +L D +
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKK---INKAGTTVVV----ATHAKELVDTTRHRV 206
Query: 396 ILLSDGQI 403
I L G++
Sbjct: 207 IALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 48/198 (24%), Positives = 72/198 (36%), Gaps = 49/198 (24%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
S KK IL D+S + G + L G +GKTTL LAG + S SG + NG +
Sbjct: 8 SYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPI 64
Query: 220 GEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
++ Y+ Q D + +VRE L +
Sbjct: 65 KAKERRKSIGYVMQDVDYQLFTDSVREELLLGLK-------------------------- 98
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG-EM 337
E N + LK L L + +SGG+++R+ +
Sbjct: 99 ------------ELDAGNEQAETVLKDLDLYALKE-----RHPLSLSGGQKQRLAIAAAL 141
Query: 338 MVGPALALFMDEISTGLD 355
+ G L L DE ++GLD
Sbjct: 142 LSGKDL-LIFDEPTSGLD 158
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-09
Identities = 57/256 (22%), Positives = 105/256 (41%), Gaps = 56/256 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L +S +I+PG L+G SGK+TL+ + + SG++ +GHD+ ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASL 404
Query: 226 -RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
R A +SQ D + T+ +A+ Q + E
Sbjct: 405 RRQVALVSQ-DVVLFNDTIANNIAYGRTEQADRAEIE----------------------- 440
Query: 285 MKAIATEGQEANVITDYYLK--VLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ Y + V L + DT +G+ + +SGG+R+R+ ++ A
Sbjct: 441 -----------RALAAAYAQDFVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDA 488
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLFDDIILL 398
L +DE ++ LD+ + + L + + T VI S ++ A D I+++
Sbjct: 489 PILILDEATSALDNESERLVQAAL-ERLMQGRTTLVIAHRLSTIEKA-------DRIVVM 540
Query: 399 SDGQIVYQGPRELVLE 414
DG+IV +G +L
Sbjct: 541 DDGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 1e-09
Identities = 47/201 (23%), Positives = 84/201 (41%), Gaps = 43/201 (21%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQET 911
+V + +S + + G + AL+G +GAGK+TLM +L G + G I + G
Sbjct: 17 VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG----EIRVDGKE----- 67
Query: 912 FARISGYCEQND--------IHSPFV-----TVYESLLYSAWLRLPPEVD-SETRKMFIE 957
RI D +H F+ TV E+++ +D + R I+
Sbjct: 68 -VRIKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 958 EVMEL----VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
E+ E V+ V+ LS +++R+ I L ++ +DEPT+ L
Sbjct: 123 ELSERYGLPVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 1014 RAAAIVMRTVRNTVDTGRTVV 1034
+ A + +R G+T++
Sbjct: 174 QEADELFEILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 63/257 (24%), Positives = 91/257 (35%), Gaps = 56/257 (21%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEM 241
LLGP GKTTLL LAG SG + +G D+ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY 301
TV E +AF + + V E+ R EA
Sbjct: 58 TVEENVAFGLKMRKVPR-----AEIKPRVLEA---------------------------- 84
Query: 302 YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTF 360
L + D +SGG+++RV +V P + L +DE + LD
Sbjct: 85 ------LRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI-LLLDEPLSALDKKLRD 137
Query: 361 QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PRELVLEFFESM 419
Q+ LK + G + + E + D I ++ G+I G P E+ E
Sbjct: 138 QMQLELKT-IQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE----- 191
Query: 420 GFKCPKRKGVADFLQEV 436
P VA F+ E+
Sbjct: 192 ----PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 1e-09
Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 34/159 (21%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI----------TGNITISGYPKKQETFA 913
G+ TAL G SG+GKT+L+++++G R G I I + P ++
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFL---PPEKR--- 76
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
RI GY Q+ P TV +L Y W ++ + ++++ L+ ++ L L
Sbjct: 77 RI-GYVFQDARLFPHYTVRGNLRYGMW---------KSMRAQFDQLVALLGIEHL---LD 123
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
PG LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 124 RYPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-09
Identities = 51/160 (31%), Positives = 70/160 (43%), Gaps = 25/160 (15%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG--YPKKQETFARISG----Y 918
PG + AL+G +GAGK+TLM VLSG G ITI+ Y K A G Y
Sbjct: 29 YPGEIHALLGENGAGKSTLMKVLSGIHEPT--KGTITINNINYNKLDHKLAAQLGIGIIY 86
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLP-------PEVDSETRKMFIEEVMELVELKPLIQS 971
E + I +TV E+L R +D ++ ++ V LK +
Sbjct: 87 QELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE 141
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
V LS ++ L IA L+ + +I MDEPTS L
Sbjct: 142 KVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176
|
Length = 510 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-09
Identities = 67/258 (25%), Positives = 108/258 (41%), Gaps = 32/258 (12%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP----KKQET 911
+L+G+ + R G L L+G +GAGKTTL+ ++G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 912 FARISGYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
R++ + + F V E R +++ +E ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTG----V 129
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
P V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 130 AQFADRP-VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1030 GRTVVCTIHQPGIDIFDAF-DELFLMKRGGQEIYVGPLGRHSCQLIS-----YFEAIPGV 1083
G+T V IH +D+ + DEL L+ G V G + L + F+A V
Sbjct: 189 GKTAVAAIHD--LDLAARYCDELVLLADGR----VRAAGPPADVLTADTLRAAFDARTAV 242
Query: 1084 EKIKDGYNPATWMLEVTA 1101
G +PAT VT
Sbjct: 243 -----GTDPATGAPTVTP 255
|
Length = 402 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 2e-09
Identities = 52/222 (23%), Positives = 96/222 (43%), Gaps = 32/222 (14%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLS--GRKTGGYIT-GNITISGYPK 907
+ +S PG + ++G SG+GK+T LM +L GR T G + + G +
Sbjct: 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSE 82
Query: 908 KQET--FARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
++ + Q+ + S P +T+ + + + L +R + +EL+
Sbjct: 83 REMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLH-----GKGSRAEARKRAVELL 137
Query: 964 ELKPLIQSLVGLPGVSG-------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
E VGLP LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 138 EQ-------VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 1017 AIVMRTVRN-TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
A ++ +++ + G V+ H G+ + + D + +M +G
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 62/241 (25%), Positives = 98/241 (40%), Gaps = 49/241 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+DVS I G + ++LGP GKTTLL +AG + S G + NG + ER
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGPGAER 76
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q++ + + V + +AF + +G+ RRE
Sbjct: 77 --GVVFQNEALLPWLNVIDNVAFGLQLRGIEKA-------QRRE---------------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGPALAL 345
I L ++GLE + I +SGG R+RV + V P L L
Sbjct: 112 -----------IAHQMLALVGLE---GA--EHKYIWQLSGGMRQRVGIARALAVEPQL-L 154
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQI 403
+DE LD+ T Q+ L + +G V+ + E L +++LS G++
Sbjct: 155 LLDEPFGALDALTREQMQELLLD-LWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRV 213
Query: 404 V 404
V
Sbjct: 214 V 214
|
Length = 259 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 55/219 (25%), Positives = 82/219 (37%), Gaps = 55/219 (25%)
Query: 158 LPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH 217
+ + L+ILK V ++K G ++GP SGK+TLL LAG D S SG V G
Sbjct: 16 VGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQ 72
Query: 218 DMGEFVPERTAAYISQHDNH-------IGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
+ + + AA ++H I +T E +A +G S
Sbjct: 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSA----------- 121
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI---RGISGG 327
+A A L+ +GL G + +SGG
Sbjct: 122 -------------DSRAGAKA----------LLEAVGL--------GKRLTHYPAQLSGG 150
Query: 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCL 366
E++RV G LF DE + LD +T +I + L
Sbjct: 151 EQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 2e-09
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 872 LMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
L+G SG GKTTL+ +L+G + G + ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988
+TV E++ + +R +V K + E + LV+L+ LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADR-----KPHQLSGGQQQR 108
Query: 989 LTIAVELVANPSIIFMDEPTSGLDAR 1014
+ +A LV P I+ +DEP S LD +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-09
Identities = 56/211 (26%), Positives = 105/211 (49%), Gaps = 23/211 (10%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYPKKQ--- 909
L L+ G AL+G SGAGKT+L++ L G ++ G++ I+G ++
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE--VMELVELKP 967
E++ + + QN P T+ +++L P+ E + +E V E + L P
Sbjct: 419 ESWRKHLSWVGQNP-QLPHGTLRDNVLLGN-----PDASDEQLQQALENAWVSEFLPLLP 472
Query: 968 L-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ + +G +GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N
Sbjct: 473 QGLDTPIG-DQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NA 530
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+T + HQ ++ +D++++M+ G
Sbjct: 531 ASRRQTTLMVTHQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 3e-09
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L D+S I+ G + +LGP +GK+TLL LAG L S SG + +G D+ P+
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDLASLSPK 69
Query: 226 ---RTAAYISQ 233
R AY+ Q
Sbjct: 70 ELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 62/221 (28%), Positives = 88/221 (39%), Gaps = 54/221 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L DVS I+ G L GP +GKTTLL L G L S G+V G D+ + R
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDV-NRLRGR 72
Query: 227 TAAYISQH------DNHI-GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + D + + TV E +A +G R E+ RR A
Sbjct: 73 QLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKER-----EIQRRVGAA------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L+ +GLE AD +SGGE++RV +V
Sbjct: 122 -----------------------LRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIV 153
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
P L L DE + LD + +I++ LK+ ++ GT VI
Sbjct: 154 NSPPL-LLADEPTGNLDPDLSERILDLLKR-LNK-RGTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 3e-09
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 49/254 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK+ + + G +LG SGK+TLL LAG D G +T NG ++
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEI------ 402
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
+ E +RET++ + + S L R+N PD D +
Sbjct: 403 ----------ASLDEQALRETISVLTQRVHLFS-----GTL--RDNLRLANPDAS-DEEL 444
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
A + ++ +T +G E R +SGGER+R+ ++ A
Sbjct: 445 WAALQQVGLEKLLES-------APDGLNTWLG-EGGRRLSGGERRRLALARALLHDAPLW 496
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDIILLSD 400
+DE + GLD T Q++ L +H G ++ + T+ L D II+L +
Sbjct: 497 LLDEPTEGLDPITERQVLALLFEHA---EGKTLLMV------THRLRGLERMDRIIVLDN 547
Query: 401 GQIVYQGPRELVLE 414
G+I+ +G +L
Sbjct: 548 GKIIEEGTHAELLA 561
|
Length = 573 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (144), Expect = 3e-09
Identities = 56/200 (28%), Positives = 95/200 (47%), Gaps = 16/200 (8%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQET--FARISGYC 919
+ G TAL+G +G+GK+TL+ L+G + T G + G+I +S K++E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPE--VDSETRKMFIEEVMELVELKPLIQSLVGLPG 977
Q P ++E + P + E + E +E+V L
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFE- 144
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1037
LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 145 ---LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201
Query: 1038 HQPGIDIFDAFDELFLMKRG 1057
H D+ D D ++L+++G
Sbjct: 202 HLMD-DVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 48/191 (25%), Positives = 77/191 (40%), Gaps = 18/191 (9%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
D L +GLS G + G +G+GKTTL+ +L+G G + N ++
Sbjct: 11 DGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGG--PLDFQR 68
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
++ AR Y ++V E+L + + E +EE + V L
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENL---RFWH--ADHSDEQ----VEEALARVGLNGFE 119
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
V LS Q++R+ +A L++ + +DEPT+ LD A +
Sbjct: 120 DRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCAR 174
Query: 1030 GRTVVCTIHQP 1040
G VV T HQ
Sbjct: 175 GGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 42/116 (36%), Positives = 57/116 (49%), Gaps = 18/116 (15%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF- 222
+L D+S I G+M LLGP SGKTTLL +AG L+ + SG + ++G D+
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLH 70
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE--NEAGIK 276
+R ++ QH MTV + +AF LT L RRE N A IK
Sbjct: 71 ARDRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK 114
|
Length = 353 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-09
Identities = 49/216 (22%), Positives = 82/216 (37%), Gaps = 47/216 (21%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L G++ + G + ALMG +G+GK+TL + G G I G
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG----------- 63
Query: 916 SGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
DI + E ++ A+ PPE+ F+ V E
Sbjct: 64 ------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE----------- 103
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
G S ++KR I L+ P + +DEP SGLD A +V + + G++
Sbjct: 104 -------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 1033 VVCTIHQPGIDIFDAFDELFLM------KRGGQEIY 1062
V+ H + + D + ++ K G +E+
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELA 192
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-09
Identities = 51/188 (27%), Positives = 83/188 (44%), Gaps = 29/188 (15%)
Query: 849 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYIT---GNITIS 903
+ LNGLS G ++G +GAGK+TL++ ++G T G I ++T
Sbjct: 14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 904 GYPKKQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR-----LPPEVDSETRK 953
K+ AR+ +G P +T+ E+L A R L ++ R
Sbjct: 74 SVAKRANLLARVFQDPLAGTA-------PELTIEENLAL-AESRGKKRGLSSALNERRRS 125
Query: 954 MFIEEVMELVE-LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
F E + L L+ + +GL LS QR+ L++ + + P I+ +DE T+ LD
Sbjct: 126 SFRERLARLGLGLENRLSDRIGL-----LSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 1013 ARAAAIVM 1020
+ A VM
Sbjct: 181 PKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 4e-09
Identities = 54/183 (29%), Positives = 82/183 (44%), Gaps = 30/183 (16%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK-- 908
D ++L+ +S PG A++G SG+GK+TL+ +L G +T +G++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAGL 520
Query: 909 -QETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ R G QN + S +++E++ A L L +E E +
Sbjct: 521 DVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARMA 565
Query: 967 PLIQSLVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
L + + +P G LS QR+RL IA LV P I+ DE TS LD R A
Sbjct: 566 GLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Query: 1018 IVM 1020
IV
Sbjct: 626 IVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 40/212 (18%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISG---YPKKQ 909
++G+S + G + ++G SG+GK+ L + G K I G I G +
Sbjct: 20 AVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSE 79
Query: 910 ETFARISG----YCEQNDIHS--PFVTV----YESLLYSAWLRLPPEVDSETRKMFIEEV 959
+ +I G Q+ + S P +T+ E L ++K E
Sbjct: 80 KELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKERA 131
Query: 960 MELVELKPLIQSLVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+EL+EL VG+P LS R+R+ IA+ L NP ++ DEPT+ L
Sbjct: 132 IELLEL-------VGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTAL 184
Query: 1012 DARAAAIVMRTVRNTV-DTGRTVVCTIHQPGI 1042
D A ++ ++ + G ++ H G+
Sbjct: 185 DVTVQAQILDLLKELQREKGTALILITHDLGV 216
|
Length = 316 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 49/252 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHDMGEFVP 224
IL ++S IKPG + ++G SGK+TL KL V +GRV +GHD+ P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 225 E---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
R + Q +N + ++R+ +A + DP +
Sbjct: 72 AWLRRQVGVVLQ-ENVLFNRSIRDNIALA---------------------------DPGM 103
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+ EA + + + L DT+VG++ G+SGG+R+R+ ++
Sbjct: 104 SME------RVIEAAKLAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHN 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L DE ++ LD + I+ + I +G VI ++ T D II++ G
Sbjct: 157 PRILIFDEATSALDYESEHAIMRNMHD---ICAGRTVI-IIAHRLSTVKNADRIIVMEKG 212
Query: 402 QIVYQGPRELVL 413
+IV QG + +L
Sbjct: 213 RIVEQGSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 5e-09
Identities = 46/215 (21%), Positives = 94/215 (43%), Gaps = 44/215 (20%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
L ++ G L A++G G+GK++L+ L G K G ++ +I+
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIA---------- 69
Query: 914 RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
Y Q P++ T+ E++L+ D E E+V++ L+P ++
Sbjct: 70 ----YVSQ----EPWIQNGTIRENILFGK------PFDEE----RYEKVIKACALEPDLE 111
Query: 971 SL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR-AAAIVMRT 1022
L +G G++ LS Q++R+++A + ++ I +D+P S +DA I
Sbjct: 112 ILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENC 170
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + +T + HQ + + D++ ++ G
Sbjct: 171 ILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 6e-09
Identities = 54/251 (21%), Positives = 101/251 (40%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL D+S + G++T L+GP GK+TLL A L SG V +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP---QSGTVFLGDKPISMLSSR 72
Query: 226 RTAAYIS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A ++ QH +TVRE +A+ G P
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY------------------------GRSP----- 103
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++ E N + ++ + AD + D +SGG+R+R ++
Sbjct: 104 -WLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD + +++ +++ G V+++L + D +++L++G
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMRELN--TQGKTVVTVLHDLNQASRYCDHLVVLANGH 215
Query: 403 IVYQGPRELVL 413
++ QG E V+
Sbjct: 216 VMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 49/164 (29%), Positives = 79/164 (48%), Gaps = 12/164 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG---YPKKQE 910
L G+ F +TAL+G SG GK+T + L+ G ITGN+++ G Y ++
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNED 80
Query: 911 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
+ G Q PF ++YE+++Y LRL D +E ++ +
Sbjct: 81 VVQLRKQVGMVFQQPNPFPF-SIYENVIYG--LRLAGVKDKAVLDEAVETSLKQAAIWDE 137
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
++ + +S LS Q++R+ IA L P +I +DEPTS LD
Sbjct: 138 VKDHLHESALS-LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 7e-09
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 20/197 (10%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
+L G+ + G + ++G SG+GK+TL+ ++ G I + ++ K
Sbjct: 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNI 71
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ G Q P +TV E++ + P +V ++ E +EL+E
Sbjct: 72 NELRQKVGMVFQQFNLFPHLTVLENITLA-----PIKVKGMSKAEAEERALELLEK---- 122
Query: 970 QSLVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+ ++
Sbjct: 123 ---VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK 179
Query: 1025 NTVDTGRTVVCTIHQPG 1041
+ + G T+V H+ G
Sbjct: 180 DLAEEGMTMVVVTHEMG 196
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 8e-09
Identities = 48/182 (26%), Positives = 79/182 (43%), Gaps = 31/182 (17%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
LL +S PG L+G +GAGK+TL+ +L+G +G +T R
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LR 67
Query: 915 ISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
+ GY Q P TV + ++ + L E++ + + L EL+ L++ L
Sbjct: 68 V-GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEEL 126
Query: 973 ---------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 127 DGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1014 RA 1015
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 9e-09
Identities = 61/201 (30%), Positives = 93/201 (46%), Gaps = 31/201 (15%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
D LVL +S PG +TAL+G SG+GK+T++ +L + GG + + G P
Sbjct: 26 DTLVL-QDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG----QVLLDGKP--- 77
Query: 910 ETFARISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELV----- 963
IS Y E +HS V E +L++ L+ ++ E V E
Sbjct: 78 -----ISQY-EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSF--ECVKEAAQKAHA 129
Query: 964 -----ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
EL + VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1019 VMRTVRNTVDTGRTVVCTIHQ 1039
V + + + RTV+ H+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR 208
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 48/217 (22%), Positives = 88/217 (40%), Gaps = 46/217 (21%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
EDK +L G++ + G + A+MG +G+GK+TL ++G + +G I G Q+
Sbjct: 11 EDKEIL-KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 911 TFARISGYCEQNDIHSPFVTVYESL---LYSAWLRLPPEVDSETRKMFI----------- 956
+ E L+ A+ + P E+ + F+
Sbjct: 66 LLE---------------LEPDERARAGLFLAF-QYPEEIPGVSNLEFLRSALNARRSAR 109
Query: 957 -EEVMELVELKPLIQSLVGLPGVS----------GLSTEQRKRLTIAVELVANPSIIFMD 1005
EE ++L++ L+++ + L G+ G S ++KR I + P + +D
Sbjct: 110 GEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
E SGLD A IV + + R+ + H +
Sbjct: 170 EIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 1e-08
Identities = 54/246 (21%), Positives = 95/246 (38%), Gaps = 53/246 (21%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L D+S ++ G + LLGP +GKTT + + G + SG V ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLD-IAAR 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+ + +M V + L + A+ +G+ ARR
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR--------------- 108
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPALA 344
D +L+ L L A ++ + +S G +++V ++ P L
Sbjct: 109 -------------IDEWLERLELSEYA-----NKRVEELSKGNQQKVQFIAAVIHDPEL- 149
Query: 345 LFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE +GLD ++ L + +G VI +L D ++LL+ G
Sbjct: 150 LILDEPFSGLDPVNVELLKDVIRELAR-----AGKTVILSTHQMELVEELCDRVLLLNKG 204
Query: 402 QIVYQG 407
+ V G
Sbjct: 205 RAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 46/186 (24%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 906
L ++ +TAL+G SG GK+TL+ D++ G + I G + G Y
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDGQDIYD 72
Query: 907 KKQETFA---RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
KK + R+ G Q +PF +++Y+++ Y P + K ++E++E
Sbjct: 73 KKIDVVELRRRV-GMVFQKP--NPFPMSIYDNIAYG------PRLHGIKDKKELDEIVE- 122
Query: 963 VELKPLIQSL--VGLPG-VS--------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+SL L V GLS Q++RL IA L P ++ +DEPTS L
Sbjct: 123 -------ESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSAL 175
Query: 1012 DARAAA 1017
D A
Sbjct: 176 DPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 1e-08
Identities = 54/218 (24%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR---KTGGYIT-GNITISGYPKKQ--E 910
L +S + +PG ++G +G+GK++L+ L R + G I + IS
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLRS 78
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLR--LPPE---VDSETRKMFIEEVMELVEL 965
+ I Q + +L+S +R L P D E + + +E V L
Sbjct: 79 RISIIP----Q-----------DPVLFSGTIRSNLDPFGEYSDEE-----LWQALERVGL 118
Query: 966 KPLIQSLV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
K ++SL GL V LS QR+ L +A L+ I+ +DE T+ +D A++
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+T+R TV+ H+ +D D + ++ +G
Sbjct: 179 QKTIR-EAFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 46/157 (29%), Positives = 77/157 (49%), Gaps = 12/157 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L ++ G L ++G SG GKTTL+++++G Y G+IT+ G P + R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
G QN+ P+ V +++ + L V+ R ++++ V L+ + +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 61/258 (23%), Positives = 100/258 (38%), Gaps = 54/258 (20%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228
+D+S I G + LG +GK+T L L G L L SG+V NG D P R
Sbjct: 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKVRVNGKD-----PFRRR 92
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
+ + M + L + E+L + PD D + + +
Sbjct: 93 EEYLRSIGLV--MGQKLQLWW---DLPALDSLEVLKLIYE-------IPD---DEFAERL 137
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMD 348
D+ ++L L + + + R +S G+R R ++ P LF+D
Sbjct: 138 -----------DFLTEILDL----EGFLKWPV-RKLSLGQRMRAELAAALLHPPKVLFLD 181
Query: 349 EISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI-------ILLSDG 401
E + GLD + I LK++ T +++ T+ FDDI +L+ G
Sbjct: 182 EPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-FDDIATLCDRVLLIDQG 233
Query: 402 QIVYQGPRELVLEFFESM 419
Q+V+ G + E F
Sbjct: 234 QLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 58/240 (24%), Positives = 94/240 (39%), Gaps = 49/240 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
L +VS + GR+ LGP +GK+T + + G L SG V G D+ + E
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY- 284
R Y+ +H+ +M VRE L F A +Y
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIA------------------------------GIYG 104
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
MK + + +I E+ + I +S G R+RV + ++
Sbjct: 105 MKGQLLKQRVEEMI----------ELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV 154
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE +TGLD + +I N +K I +I E + D +I+++ G+IV
Sbjct: 155 LILDEPTTGLDPNQLVEIRNVIKN---IGKDKTIILSTHIMQEVEAICDRVIIINKGKIV 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 65/270 (24%), Positives = 100/270 (37%), Gaps = 54/270 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
L VS IK G LLGP GKTTLL +AG + SG + +G D+ P
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPH 70
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R + Q+ +TV E +AF R + + E+ R EA
Sbjct: 71 KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA----------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ + EG + +SGG+++RV +V
Sbjct: 115 LDLVQLEGYA-----------------------NRKPSQLSGGQQQRVAIARALVNEPKV 151
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE LD + LK+ + G + + E + D I +++ G+I
Sbjct: 152 LLLDEPLGALDLKLRKDMQLELKR-LQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210
Query: 405 YQG-PRELVLEFFESMGFKCPKRKGVADFL 433
G P E+ E P + VADF+
Sbjct: 211 QIGTPEEIYEE---------PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 2e-08
Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L G+S + G + ++G SG+GK+TL+ L+G G IT + G K R
Sbjct: 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRR 77
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
G Q P +TV E++ + P +V ++ E+ +EL+E VG
Sbjct: 78 KVGMVFQQFNLFPHLTVLENVTLA-----PVKVKKLSKAEAREKALELLEK-------VG 125
Query: 975 LPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
L + LS Q++R+ IA L +P ++ DEPTS LD V+ +++ +
Sbjct: 126 LADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE 185
Query: 1030 GRTVVCTIHQ 1039
G T++ H+
Sbjct: 186 GMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 60/225 (26%), Positives = 94/225 (41%), Gaps = 27/225 (12%)
Query: 842 QEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901
M+L V E L LSG R G + L+G +GAGK+TL+ ++G +G +G+I
Sbjct: 2 ILMQLNDVAES--TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQ 56
Query: 902 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
+G P + AR Y Q +P W L +TR + +
Sbjct: 57 FAGQPLEAWSATELARHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLND 108
Query: 959 VMELVEL-KPLIQSLVGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLD 1012
V + L L +S L G QR RL + + ANP+ ++ +DEP + LD
Sbjct: 109 VAGALALDDKLGRSTNQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLD 164
Query: 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + R + G +V + H + A +L+KRG
Sbjct: 165 VAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHA-HRAWLLKRG 208
|
Length = 248 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 52/159 (32%), Positives = 76/159 (47%), Gaps = 21/159 (13%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQETFARIS-G 917
+TAL+G SG GK+TL+ D++ G K ITG +T+ G Y RI G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 918 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
Q +PF +++YE++ Y LR D + +E + L ++ +
Sbjct: 87 MVFQKP--NPFPMSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSH 142
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 54/209 (25%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 871 ALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS---GYCEQN---DI 924
A++G +GAGK+TL +G +G++ I G P +E + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984
SP TV + + + + +D ET + + ++ L+ L + P LS
Sbjct: 92 FSP--TVEQDIAFGP---INLGLDEETVAHRVSSALHMLGLEELRDRV---P--HHLSGG 141
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGID 1043
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDL- 200
Query: 1044 IFDAFDELFLMKRGG-------QEIYVGP 1065
+ + D +++M +G +EI++ P
Sbjct: 201 VPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 3e-08
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 5/101 (4%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+T L+D+S ++ G L+GP GK+TLL +AG + SG V +G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSR 259
+ P Y+ Q D + +TV + +A QGV
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKA 106
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 68/265 (25%), Positives = 109/265 (41%), Gaps = 55/265 (20%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
I+P K L+ +S ++ G ++GP SGK+TL + G SG V +G
Sbjct: 324 IVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVG---IWPPTSGSVRLDG 379
Query: 217 HDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
D+ ++ E + Y+ Q D + TV E +A R+ EN
Sbjct: 380 ADLKQWDRETFGKHIGYLPQ-DVELFPGTVAENIA----------RF--------GEN-- 418
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
DP+ K I EA + + +L L DT++G +SGG+R+R+
Sbjct: 419 ---ADPE-----KII-----EAAKLAGVHELILRLPDGYDTVIGPGGA-TLSGGQRQRIA 464
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPET 388
+ G + +DE ++ LD + N +K + T V+ SLL
Sbjct: 465 LARALYGDPKLVVLDEPNSNLDEEGEQALANAIK-ALKARGITVVVITHRPSLLGCV--- 520
Query: 389 YDLFDDIILLSDGQIVYQGPRELVL 413
D I++L DG+I G R+ VL
Sbjct: 521 ----DKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 4e-08
Identities = 61/281 (21%), Positives = 110/281 (39%), Gaps = 73/281 (25%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
FE++ F+Y +K LKD++ IKPG ++GP +GKTTL+ L D
Sbjct: 5 FENVNFSY------DEKKPV-LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ- 56
Query: 207 KVSGRVTYNG---HDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G++ +G D+ + Q D + T+ E +
Sbjct: 57 --KGQILIDGIDIRDISRKSLRSMIGVVLQ-DTFLFSGTIMENIRLG------------- 100
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL--GLEVCADTMVGDEMI 321
+P+ + ++A G ++ L G DT++G+
Sbjct: 101 ------------RPNATDEEVIEAAKEAG------AHDFIMKLPNGY----DTVLGE--- 135
Query: 322 RG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G +S GER+ + M+ L +DE ++ +D+ T I L++ + G I
Sbjct: 136 NGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK---LMKGRTSI 192
Query: 380 ------SLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
S ++ A D I++L DG+I+ +G + +L
Sbjct: 193 IIAHRLSTIKNA-------DKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 14/158 (8%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSG-RKTGGYITGNITISGYPKKQETFARISGYCE 920
+TAL+G SG GK+TL+ D++ G R TG + I R G
Sbjct: 34 VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVF 93
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q +PF ++YE++ Y R+ E + +T +E+ ++ L ++ + +
Sbjct: 94 QRP--NPFPKSIYENVAYGP--RIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSAL- 148
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
LS Q++RL IA L NP +I MDEP S LD A A
Sbjct: 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 47/209 (22%), Positives = 71/209 (33%), Gaps = 49/209 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+ D+S + G + GP +GKTTLL LAG L +G V + G + E
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNV-RE 71
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
Y+ E+T E L F N A I
Sbjct: 72 SYHQALLYLGHQPGIKTELTALENLHF-------------WQRFHGSGNAATIW------ 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+A+A + + GLE D + +S G+++RV + + PA
Sbjct: 113 ---EALA------------QVGLAGLE--------DLPVGQLSAGQQRRVALARLWLSPA 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVH 371
+DE T LD + + H
Sbjct: 150 PLWILDEPFTALDKEGVALLTALMAAHAA 178
|
Length = 209 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 5e-08
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 28/196 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ---ET 911
L+ +S RPG A++G G+GK+TL+ +L G + T G ++ + G +Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG----SVLLDGVDIRQIDPAD 536
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
R GY Q D + T+ +++ A P D E I EL + ++
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA-----PYADDEE----ILRAAELAGVTEFVRR 586
Query: 972 -------LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+G G LS QR+ + +A L+ +P I+ +DEPTS +D R+ ++
Sbjct: 587 HPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLK 645
Query: 1025 NTVDTGRTVVCTIHQP 1040
+ G+T+V H+
Sbjct: 646 RWL-AGKTLVLVTHRT 660
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 5e-08
Identities = 51/186 (27%), Positives = 77/186 (41%), Gaps = 32/186 (17%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYI---TGNITISGYPKKQETFARISGYCEQN 922
G L L+G +GAGKTTL+ R G I G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 923 DIHS-----PFVTVYESLLYS-----AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
H P ++V +++ WLR P D + + + V L L
Sbjct: 58 --HEFAWDFP-ISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRP 110
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
VG LS QR+R+ +A L PS++ +DEP +GLD ++ G
Sbjct: 111 VG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 1033 VVCTIH 1038
++ T H
Sbjct: 166 ILMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 56/215 (26%), Positives = 85/215 (39%), Gaps = 40/215 (18%)
Query: 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG- 904
L +EDK +L GL+ RPG + A+MG +G+GK+TL L+GR+ G + G
Sbjct: 7 LHVSVEDKAIL-RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGK 65
Query: 905 --------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP 944
YP I G Q + + V R
Sbjct: 66 DLLELSPEDRAGEGIFMAFQYP------VEIPGVSNQFFLQTALNAVRS-------YRGQ 112
Query: 945 PEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1003
+D + +EE + L+++ L+ V + G S ++KR I V P +
Sbjct: 113 EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNV----GFSGGEKKRNDILQMAVLEPELCI 168
Query: 1004 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
+DE SGLD A IV V + D R+ + H
Sbjct: 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD---M 219
T+L DVS I+ G + LLGP SGK+TLL +AG L+ SG + +G D +
Sbjct: 11 GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-LEE--PDSGSILIDGEDLTDL 67
Query: 220 GEFVP--ERTAAYISQHDNHIGEMTVRETLAF 249
+ +P R + Q +TV E +A
Sbjct: 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIAL 99
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 6e-08
Identities = 62/251 (24%), Positives = 101/251 (40%), Gaps = 45/251 (17%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD---M 219
+LKD+S I+PG ++GP SGK+TL+ L D + SG + +G D +
Sbjct: 340 GKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDI 396
Query: 220 GEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ +SQ D + T+RE +A G
Sbjct: 397 SLDSLRKRIGIVSQ-DPLLFSGTIRENIAL------------------------GRPDAT 431
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
D ++ E + L DT+VG E +SGG+R+R+ ++
Sbjct: 432 DEEIEEALKLANAHEF---------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALL 481
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DE ++ LD+ T I + LK+ + T +I+ T D II+L
Sbjct: 482 RNPPILILDEATSALDTETEALIQDALKK-LLKGRTTLIIAHR---LSTIKNADRIIVLD 537
Query: 400 DGQIVYQGPRE 410
+G+IV +G E
Sbjct: 538 NGRIVERGTHE 548
|
Length = 567 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 54/215 (25%), Positives = 86/215 (40%), Gaps = 27/215 (12%)
Query: 849 VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY------ITGNITI 902
V +L LS PG +TAL+G +GAGK+TL+ L+G TGG +TG++T+
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 903 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAW--LRLPPEVDSETRKMFIE 957
+G P AR+ Q + + E +L + R + ++
Sbjct: 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEI-AW 127
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVEL---------VANPSIIFMDEPT 1008
+ + L L+ V+ LS + R+ A L P + +DEPT
Sbjct: 128 QALALAGATALVGR-----DVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 1009 SGLDARAAAIVMRTVRNTVDTGRTVVCTI-HQPGI 1042
+ LD ++ TVR V I H P +
Sbjct: 183 AALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 6e-08
Identities = 42/173 (24%), Positives = 70/173 (40%), Gaps = 44/173 (25%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
+ +LL LS G A++G +GAGK+TL+ +L+G G ++G + + G K
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
GY +Q+ +T +EE+ E +
Sbjct: 387 -----IGYFDQH--------------RDELD------PDKTV---LEELSEGFPDGDEQE 418
Query: 971 SL-----VGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 419 VRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-08
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 26/194 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGRKTGGYITGNITISGYPKKQ 909
L+GL+ RPG AL+G SGAGK+TL +L SGR I + G +Q
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGR---------ILLDGVDLRQ 406
Query: 910 ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
E AR++ + + + +V E++ Y EV++ R E + L
Sbjct: 407 LDPAELRARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--AL 462
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ +G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + +
Sbjct: 463 PEGYDTYLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-E 520
Query: 1026 TVDTGRTVVCTIHQ 1039
T+ GRT + H+
Sbjct: 521 TLMKGRTTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 38/231 (16%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKKQ 909
E++LV LN +S F + ++G SG+GK+TL+ +G Y G I + Y +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY--GTIQVGDIYIGDK 93
Query: 910 ETFARISGYCEQNDIHS--------PFV-----------TVYESLLYSAWLRLPPEVDSE 950
+ + I + V T+ + +++ + +++
Sbjct: 94 KNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK 153
Query: 951 TRKMFIEEVMEL----VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006
F M L +E P GLS Q++R+ IA L P I+ DE
Sbjct: 154 KLAKFYLNKMGLDDSYLERSPF-----------GLSGGQKRRVAIAGILAIQPEILIFDE 202
Query: 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
PT+GLD + +M+ + + +TV H + + DE+ +M +G
Sbjct: 203 PTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLEVADEVIVMDKG 252
|
Length = 320 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 58/207 (28%), Positives = 87/207 (42%), Gaps = 28/207 (13%)
Query: 844 MKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS 903
M+L V L LS R G + L+G +GAGK+TL+ ++G G +G+I +
Sbjct: 1 MQLNDVAVSTR--LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFA 55
Query: 904 G-----YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE 958
G + AR Y Q + V++ L L P + +E + E
Sbjct: 56 GQPLEAWS--AAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNE 109
Query: 959 VMELVELKPLIQSLVGLPGVSGLSTE-QRKRLTIAVEL----VANPS--IIFMDEPTSGL 1011
V E + L + V +SG E QR RL AV L NP+ ++ +DEP + L
Sbjct: 110 VAEALGLDDKLGRSVN--QLSG--GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSL 164
Query: 1012 DARAAAIVMRTVRNTVDTGRTVVCTIH 1038
D A + R + G VV + H
Sbjct: 165 DVAQQAALDRLLSELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 8e-08
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 44/186 (23%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L+G++ +TALMG SG+GK+TL+ V N I YP+ AR+
Sbjct: 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-----------NRLIELYPE-----ARV 61
Query: 916 SG--YCEQNDIHS--------------------PFVTVYESLLYSAWLRLPPEVDSETRK 953
SG Y + DI P ++++E++ L+L V S+ ++
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALG--LKLNRLVKSK-KE 118
Query: 954 MF--IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ + +E +L ++ + P LS Q++RL IA L P ++ DEPT+ L
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANL 177
Query: 1012 DARAAA 1017
D A
Sbjct: 178 DPENTA 183
|
Length = 250 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 52/188 (27%), Positives = 82/188 (43%), Gaps = 18/188 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L GLS + G TAL+G +GAGK+TL+ L+G G + + G E +
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVR 78
Query: 917 ---GYCEQNDIHSPFV-TVYESLLYSAW-LRL-PPEVDSETRKMFIEEVMELVELKPLIQ 970
G Q+ F TV++ + + + L EV+ EE ++ V +
Sbjct: 79 SKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRV-----EEALKAVRMWDFRD 133
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
LS Q+KR+ IA L +P +I +DEP + LD R +M + + G
Sbjct: 134 K-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQG 188
Query: 1031 RTVVCTIH 1038
+TV+ H
Sbjct: 189 KTVIVATH 196
|
Length = 274 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-08
Identities = 54/205 (26%), Positives = 89/205 (43%), Gaps = 31/205 (15%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITG-NITISGYPKKQETFARISGYCEQ 921
G + +MG+SG+GK+T + +L+ T G +I G NI + +E + G Q
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78
Query: 922 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG- 980
P +T+ ++ L + RK E+ +EL++L VGL
Sbjct: 79 QFALFPHMTILQNTSLGPELL---GWPEQERK---EKALELLKL-------VGLEEYEHR 125
Query: 981 ----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 1035
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1036 TIHQPGIDIFDAF---DELFLMKRG 1057
H D+ +A D + +MK G
Sbjct: 186 ITH----DLDEAIRIGDRIVIMKAG 206
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 48/206 (23%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-----GE 221
+LK ++ + G + LLG +GK+TLLL L G L SG V +G + G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDGEPLDYSRKGL 63
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + Q D+ + V + +AF G+ E+ RR EA
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------- 111
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L +G + +SGGE+KRV +
Sbjct: 112 ----------------------LTAVGASGLR-----ERPTHCLSGGEKKRVAIAGAVAM 144
Query: 341 PALALFMDEISTGLDSSTTFQIVNCL 366
L +DE + GLD + Q++ L
Sbjct: 145 RPDVLLLDEPTAGLDPAGREQMLAIL 170
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 1e-07
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 33/193 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+ ++ ++PG + ++GP SGK+TL LAG+ D + G V + G D+ E PE
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 226 RTAAYISQHDNHIGEMTVRETLAFS--ARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
A GE +AF GV +++ L T L + G +P D
Sbjct: 74 DRA----------GEGIF---MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV-GPA 342
+++ + K+ L++ D + + G SGGE+KR +M V P
Sbjct: 121 -----------QDLMEE---KIALLKMPEDLLTRSVNV-GFSGGEKKRNDILQMAVLEPE 165
Query: 343 LALFMDEISTGLD 355
L + +DE +GLD
Sbjct: 166 LCI-LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 17/168 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-------KK 908
+L+ +S + G + A++G SG+GK+TL+ +L G T +G++ +G P K
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E + G+ Q P T E++ +P + + +E++ L
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENV------AMPLLIGKKKPAEINSRALEMLAAVGL 135
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 136 EHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Query: 320 MIRGISGGERKRVTTGEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+ +SGG+R+RV ++ P L L +DE ++GLD ++ +++ L++ G V
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDL-LLLDEPTSGLDPASRERLLELLRELA--EEGRTV 133
Query: 379 ISLLQPAPETYDLFDDIILLSDGQ 402
I + D +I+L DG+
Sbjct: 134 IIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 60/274 (21%), Positives = 98/274 (35%), Gaps = 64/274 (23%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
K L +VS I+ G ++G SGK+TL LAG S SG + +G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 219 MGEFVPERTAA----YISQH-DNHIG-EMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ + + Q + + TV L+ R G+ + + EL +
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD---Q 127
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
G+ P +L E+ SGG+R+R+
Sbjct: 128 VGLPPS-----------------------FLDRRPHEL--------------SGGQRQRI 150
Query: 333 TTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLLQPA 385
++ P L L +DE ++ LD S QI+N L + G + +L+
Sbjct: 151 AIARALIPEPKL-LILDEPTSALDVSVQAQILNLL-LELKKERGLTYLFISHDLALV--- 205
Query: 386 PETYDLFDDIILLSDGQIVYQGPRELVLEFFESM 419
+ D I ++ +GQIV GP E +L
Sbjct: 206 ---EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-07
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 31/217 (14%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L++VS + PG L+G +GK+TLL LAG+L+ SG VT G V
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVT---RPKGLRV-- 68
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
Y+SQ E TV + + +G G ELL EL D +
Sbjct: 69 ---GYLSQEPPLDPEKTVLDYVI-----EGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 286 KAIATEGQ---EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ EA L LG D V +SGG R+RV ++
Sbjct: 121 ALLEELDGWTLEARAEEA--LLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEP 172
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
L +DE + LD + + + LK++ GT ++
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRY----PGTVIV 205
|
Length = 530 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 38/193 (19%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNI-TISGYPKKQETFARISGYCEQND 923
RPG + ++G +G GK+T + +L+G + N+ P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGE-----LKPNLGRYEDPPSWDEVIKRFRGTELQN- 151
Query: 924 IHSPFVTVYESLLYSAWLR----------LPPEVDSETRKM--------FIEEVMELVEL 965
Y LY LR +P V + ++ +EV+E + L
Sbjct: 152 --------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGL 203
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ ++ VS LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 204 ENVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRE 258
Query: 1026 TVDTGRTVVCTIH 1038
+ G+ V+ H
Sbjct: 259 LAEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 58/259 (22%), Positives = 96/259 (37%), Gaps = 53/259 (20%)
Query: 150 DIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVS 209
I G P LT + G +T ++GP SGK+TLL +AG S
Sbjct: 5 KIRFSYGEQPMHFD-LTFAQ--------GEITAIVGPSGSGKSTLLNLIAGFE---TPQS 52
Query: 210 GRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
GRV NG D+ P +R + + Q +N +TV + + G+ +L E
Sbjct: 53 GRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL-----GLSPGLKLTAE--D 105
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
R+ + K + E +SGGE
Sbjct: 106 RQAIEVALARVGLAGLEKRLPGE--------------------------------LSGGE 133
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
R+RV ++V L +DE LD + ++++ L +H + V+ + +
Sbjct: 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLD-LVLDLHAETKMTVLMVTHQPEDA 192
Query: 389 YDLFDDIILLSDGQIVYQG 407
L ++ L +G+I QG
Sbjct: 193 KRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 52/206 (25%), Positives = 97/206 (47%), Gaps = 31/206 (15%)
Query: 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 920
F G +TA++G SG+GK+TL+++++G +T +G + I+G A +S +
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ--SGRVLINGVDVTAAPPADRPVSMLFQ 77
Query: 921 QNDIHSPFVTVYES--LLYSAWLRLPPE----VDSETRKMFIEEVMELVELKPLIQSLVG 974
+N++ +TV ++ L S L+L E ++ ++ + + +
Sbjct: 78 ENNLF-AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKR------------ 124
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGR 1031
LPG LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T
Sbjct: 125 LPGE--LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKM 180
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
TV+ HQP D + + G
Sbjct: 181 TVLMVTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 29/74 (39%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1044
++RL IA LV P ++FMDEPT GLD A ++ +R V + G VV H +
Sbjct: 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1045 FDAFDELFLMKRGG 1058
A D L +MK+G
Sbjct: 217 LLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 2e-07
Identities = 62/264 (23%), Positives = 115/264 (43%), Gaps = 45/264 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+ ++++ I G T ++GP GK+TLL L+ + G V +G + + +
Sbjct: 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASK 77
Query: 226 RTAAYI---SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A I +Q+ G++TV+E +A +G L T R+E+E +
Sbjct: 78 EVARRIGLLAQNATTPGDITVQELVA-----RGRYPHQPLFTRW-RKEDEEAV------- 124
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
T+ +A IT + D+ + +SGG+R+R ++
Sbjct: 125 -------TKAMQATGITH---------------LADQSVDTLSGGQRQRAWIAMVLAQET 162
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ +DE +T LD S ++ L + ++ G + ++L + +I L +G+
Sbjct: 163 AIMLLDEPTTWLDISHQIDLLELLSE-LNREKGYTLAAVLHDLNQACRYASHLIALREGK 221
Query: 403 IVYQG-PRELVL-EFFESM-GFKC 423
IV QG P+E+V E E + G +C
Sbjct: 222 IVAQGAPKEIVTAELIERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-07
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 37/216 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQETFAR 914
L GLS + G AL+G +G GK+TL+ +L T + G I ++G P
Sbjct: 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLL----TRAWDPQQGEILLNGQP-------- 403
Query: 915 ISGYCEQNDIHSPFVTVYESL-LYSAWLR------LPPEVDSETRKMFIEEVMELVELKP 967
I+ Y E + V + + L+SA LR P D + EV++ V L+
Sbjct: 404 IADYSEA-ALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQVGLEK 457
Query: 968 LIQSLVGLP---GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
L++ GL G G LS +++RL IA L+ + ++ +DEPT GLDA ++
Sbjct: 458 LLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILEL 517
Query: 1023 VRNTVDTGRTVVCTIHQ-PGIDIFDAFDELFLMKRG 1057
+ +TV+ H+ G+ + FD + +M G
Sbjct: 518 LA-EHAQNKTVLMITHRLTGL---EQFDRICVMDNG 549
|
Length = 574 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 16/177 (9%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP------KKQ 909
+L +S + G L+G SG GK+TL +L G + G ++ G K++
Sbjct: 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDRKQR 83
Query: 910 ETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
F R Q+ + P +TV + + LR +D +K I E++++V L+
Sbjct: 84 RAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGLRS 141
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 142 ED--ADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 51/219 (23%), Positives = 90/219 (41%), Gaps = 39/219 (17%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
IL D++ I+ G+M ++G SGK+TLL + G L+ SG+V NG +
Sbjct: 8 FGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEK--FDSGQVYLNGQE--- 61
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-EAGIKPDPD 280
T S+ + RE L + + + L+ EN + G+K
Sbjct: 62 -----TPPLNSKKASKF----RREKLGY------LFQNFALIENETVEENLDLGLK---- 102
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
Y K E +E L+ +GL + + + +SGGE++RV ++
Sbjct: 103 ---YKKLSKKEKREKKK---EALEKVGLNLKLKQKIYE-----LSGGEQQRVALARAILK 151
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
P + DE + LD ++++ L + + G +I
Sbjct: 152 PPPLILADEPTGSLDPKNRDEVLDLLLELN--DEGKTII 188
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 67/277 (24%), Positives = 105/277 (37%), Gaps = 74/277 (26%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
+ +T LKDVS + G + ++G +GK+TL+ + G L+ SG V +G
Sbjct: 10 VFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERP--TSGSVLVDG 66
Query: 217 HDMGEFVP------ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
D+ R I QH N + TV E +A GV E+ R
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPK-----AEIEERV 121
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
E L+++GLE AD +SGG+++
Sbjct: 122 LE-----------------------------LLELVGLEDKADA-----YPAQLSGGQKQ 147
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385
RV + ALA L DE ++ LD TT I+ L+ IN + +L
Sbjct: 148 RVG-----IARALANNPKVLLCDEATSALDPETTQSILALLRD---INRELGLTIVLI-- 197
Query: 386 PETY------DLFDDIILLSDGQIVYQGPRELVLEFF 416
T+ + D + ++ G++V +G V E F
Sbjct: 198 --THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVF 229
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 3e-07
Identities = 63/254 (24%), Positives = 105/254 (41%), Gaps = 58/254 (22%)
Query: 828 SLTFDEV--VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
S+ F+ V +YS P M+ +G L+ +S G AL+G +G+GK+TLM
Sbjct: 2 SIKFENVDYIYSPGTP--MEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQ 51
Query: 886 VLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP 945
+ +G ITI+GY ET G + V++ P
Sbjct: 52 HFNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQF----------P 94
Query: 946 EVDSETRKMFIEEVMELVELKPL----------IQSLVGLPGVSGLSTE----------- 984
E ++F V++ VE P ++L L V GLS +
Sbjct: 95 EA-----QLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV-GLSEDLISKSPFELSG 148
Query: 985 -QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID 1043
Q +R+ IA + P I+ +DEP +GLD +M+ ++ G TV+ H D
Sbjct: 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-D 207
Query: 1044 IFDAFDELFLMKRG 1057
+ + D++ +++ G
Sbjct: 208 VAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 54/237 (22%), Positives = 92/237 (38%), Gaps = 49/237 (20%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL ++S ++ G L+ GP GK+TLL +A + + SG + + G D+ PE
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDISTLKPE 77
Query: 226 R---TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+Y +Q G+ TV + L F +++ +PDP
Sbjct: 78 IYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI----------RNQQPDP--- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ L+ L DT++ + I +SGGE++R++ +
Sbjct: 115 ---AIFLDD-----------LERFAL---PDTIL-TKNIAELSGGEKQRISLIRNLQFMP 156
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
L +DEI++ LD S VN + AV+ + E D +I L
Sbjct: 157 KVLLLDEITSALDESNK-HNVNEIIHRYVREQNIAVLWVTHDKDEINHA-DKVITLQ 211
|
Length = 225 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----VP 224
+DVS + PG + ++G SGK+TLL LAG+L G TY E +
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 225 E-------RTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
E RT ++ Q+ M V R +G+R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
Y AT D+ +V E+ + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 337 MMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+V P L +FMDE + GLD S ++++ L+ V + G AVI + L +
Sbjct: 162 NLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLV-RDLGLAVIIVTHDLGVARLLAQRL 219
Query: 396 ILLSDGQIVYQGPRELVLE 414
+++ G++V G + VL+
Sbjct: 220 LVMQQGRVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 3e-07
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 19/187 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
LL +S G L L G +GAGKTTL+ +++G G I K++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 916 SGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
C ++ I +P++T+ E+ LY ++ + I E+ L L+ LI
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYP 124
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 125 CGL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGA 179
Query: 1033 VVCTIHQ 1039
V+ T HQ
Sbjct: 180 VLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 47/172 (27%), Positives = 80/172 (46%), Gaps = 14/172 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTT---LMDVLSGRKTGGYITGNITISG---YPKKQE 910
L G+S + A +G SG GK+T L + ++ + G I I G Y K +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 911 T--FARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ G Q +PF +++E++ Y LR+ D+ + +EE ++ L
Sbjct: 79 VDELRKNVGMVFQRP--NPFPKSIFENVAYG--LRVNGVKDNAFIRQRVEETLKGAALWD 134
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
++ + + LS Q++RL IA + +PS++ MDEP S LD + A V
Sbjct: 135 EVKDKLKESAFA-LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKV 185
|
Length = 250 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 55/241 (22%), Positives = 91/241 (37%), Gaps = 50/241 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
IL ++S ++ G + GP GK+TLL +A L S SG + + G D+ PE
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVA-SLISP--TSGTLLFEGEDVSTLKPEA 74
Query: 226 --RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ +Y +Q G+ TV + L F + R +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ--------------IRNR-----RPDRAAAL 114
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPA 342
+ A D L + I +SGGE++R+ + P
Sbjct: 115 DLLARFALP-------DSIL--------------TKNITELSGGEKQRIALIRNLQFMPK 153
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+ L +DEI++ LD S I + ++V AV+ + + D +I L G
Sbjct: 154 I-LLLDEITSALDESNKRNIEEMIHRYVR-EQNVAVLWITHDKDQAIRHADKVITLQPGH 211
Query: 403 I 403
Sbjct: 212 A 212
|
Length = 223 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 51/167 (30%), Positives = 80/167 (47%), Gaps = 30/167 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG--YITGN-ITISGYPKKQET 911
L G++ + G +L+G SG GK+TL++++SG + T G + G IT G P +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG-PDRMVV 59
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-----K 966
F QN P++TV E+ + A R+ P++ R+ +EE + LV L K
Sbjct: 60 F--------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADK 110
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
Q LS ++R+ IA L P ++ +DEP LDA
Sbjct: 111 RPGQ----------LSGGMKQRVAIARALSIRPKVLLLDEPFGALDA 147
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 4e-07
Identities = 71/253 (28%), Positives = 105/253 (41%), Gaps = 50/253 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK +S ++ G ++GP SGK+TL L G SG V +G D+ ++ E
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVG---IWPPTSGSVRLDGADLRQWDRE- 406
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
Q HIG + Q V EL + EN A + D + K
Sbjct: 407 ------QLGRHIGYLP-----------QDV----ELF-DGTIAENIARFGEEADPE---K 441
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG-PALAL 345
I EA + + +L L DT +G+ +SGG+R+R+ + G P L +
Sbjct: 442 VI-----EAARLAGVHELILRLPQGYDTRIGEGG-ATLSGGQRQRIALARALYGDPFL-V 494
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDIILLSD 400
+DE ++ LDS + + GT V+ S L D I++L D
Sbjct: 495 VLDEPNSNLDSEGEAALAAAIL-AAKARGGTVVVIAHRPSALASV-------DKILVLQD 546
Query: 401 GQIVYQGPRELVL 413
G+I GPRE VL
Sbjct: 547 GRIAAFGPREEVL 559
|
Length = 580 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 63/273 (23%), Positives = 101/273 (36%), Gaps = 65/273 (23%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+ + DV+ I+ G +L+GP SGKTT L + ++ + SG + +G D+ +
Sbjct: 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDL 68
Query: 223 VPE---RTAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
P R Y+ Q IG +TV E +A + G
Sbjct: 69 DPVELRRKIGYVIQ---QIGLFPHLTVAENIATVPKLLGWDK------------------ 107
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
+ D L ++GL+ D +SGG+++RV
Sbjct: 108 ----------------ERIKKRADELLDLVGLDPSE---YADRYPHELSGGQQQRVG--- 145
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
V ALA L MDE LD T Q+ +K + G ++ + E L
Sbjct: 146 --VARALAADPPILLMDEPFGALDPITRKQLQEEIK-ELQKELGKTIVFVTHDIDEALKL 202
Query: 392 FDDIILLSDGQIVYQG-PRELVL----EFFESM 419
D I ++ G+IV P E++ +F E
Sbjct: 203 ADRIAVMDAGEIVQYDTPDEILANPANDFVEDF 235
|
Length = 309 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 4e-07
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 20/165 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L+ +S PG AL+G SG+GK+TL++++ + +G I + G+ T A +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 917 GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV------MELVELKPL 968
D+ T+ ++ Y + D IE + V+ PL
Sbjct: 406 RQVALVSQDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQDFVDKLPL 457
Query: 969 -IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ + +G GV LS QR+RL IA L+ + I+ +DE TS LD
Sbjct: 458 GLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 51/246 (20%), Positives = 100/246 (40%), Gaps = 46/246 (18%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+HL + D++ + G + ++GP +GK+TLL +AG ++ SG + N
Sbjct: 11 EHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQSHTGL 65
Query: 223 VP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
P +R + + Q +N +TVR+ + G+ P
Sbjct: 66 APYQRPVSMLFQENNLFAHLTVRQNIGL------------------------GLHPG--- 98
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
+K A + ++ + +G+ AD + D + +SGG+R+RV +V P
Sbjct: 99 ---LKLNAEQQEKVVDAA----QQVGI---ADYL--DRLPEQLSGGQRQRVALARCLVRP 146
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + LD +++ +KQ T ++ + + + I ++S G
Sbjct: 147 NPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQG 205
Query: 402 QIVYQG 407
+I
Sbjct: 206 KIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 4e-07
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 13/153 (8%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-TGNITISGYPKKQ--ETFARISGYC 919
R G + +MG+SG+GK+TL+ ++ T G + I+ +K+ E +
Sbjct: 48 REGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMV 107
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q+ P TV E++ + ++ V R+ E +ELV L+
Sbjct: 108 FQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD----- 159
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 160 ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 14/176 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQE 910
L+G+S F LTAL+G SG GK+T + L+ ITG I G Y K +
Sbjct: 20 LHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMD 79
Query: 911 TFA--RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-KP 967
+ G Q PF +VY+++ Y L++ D E +EE ++ + K
Sbjct: 80 LVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
+L S Q++R+ IA L P ++ +DEPTS LD +++ + T+
Sbjct: 137 TKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
|
Length = 251 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 4e-07
Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)
Query: 869 LTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGY----PKKQETFARIS-GYCE 920
+TA++G SG GKTTL+ + ++ G + G I G P+ T R G
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVF 90
Query: 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980
Q P +++Y+++ + R+ +EE ++ L ++S + PG
Sbjct: 91 QKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTR- 146
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 58/262 (22%), Positives = 94/262 (35%), Gaps = 71/262 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTT---LLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
++ +S ++ G LLGP +GKTT +LL L S+ + GE
Sbjct: 21 LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC----------GEP 70
Query: 223 VPERT------AAYISQHDNHIGEMTVRETLAFSARCQGVGS-----RYELLTELARREN 271
VP R + Q DN + TVRE L R G+ + L E A+ EN
Sbjct: 71 VPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLEN 130
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
+A D + +SGG ++R
Sbjct: 131 KA--------------------------------------------DAKVGELSGGMKRR 146
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
+T +V L +DE +TGLD + L+ + G ++ E L
Sbjct: 147 LTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRS--LLARGKTILLTTHFMEEAERL 204
Query: 392 FDDIILLSDGQIVYQG-PRELV 412
D + ++ +G+ + +G P L+
Sbjct: 205 CDRLCVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-07
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+ VS + G +T +LG GKTTLL L G L SG + +G D+ + P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPH 70
Query: 226 RTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSR------YEL---LTE-LARR 269
A AY+ Q +TV E L SR YEL L E L RR
Sbjct: 71 ERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRR 128
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 49/178 (27%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 872 LMGVSGAGKTTLMDVLS----GRKTGGYITGN-ITISGYPKKQETFA--RISGYCEQNDI 924
L+G SGAGK++L+ VL+ R I GN S P + R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYN 92
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984
P +TV E+L+ + P V ++ + +L++ L P LS
Sbjct: 93 LWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRYP--LHLSGG 145
Query: 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +TG T V H+ +
Sbjct: 146 QQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 11/155 (7%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISG---YPKKQETFA--RISG 917
P +TA +G SG GK+T++ L+ G + G + + G Y + A R G
Sbjct: 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88
Query: 918 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977
Q P +++ ++++ A L+L + + +E+ + L ++ + PG
Sbjct: 89 MVFQRPNPFPTMSIRDNVV--AGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 147 -GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 5e-07
Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 17/177 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L+ +S R G + +L G +GAGK+TLM VLSG G G I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 917 GYCEQND---IHS-----PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E+ IH ++V E++ + +D + M++ L +LK
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYD--AMYLRAQKLLAQLKLD 134
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
I P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 135 IN--PATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 54/213 (25%), Positives = 88/213 (41%), Gaps = 21/213 (9%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
LL+ L+ RPG + G SGAGKT+L+ L+G + G+ I P
Sbjct: 407 TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGL----WPWGSGRI-SMPADSALL-- 459
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
+ Q + P T+ E+L Y P+ + V+ V L L + L
Sbjct: 460 ---FLPQRP-YLPQGTLREALCYP---NAAPDFSDAE----LVAVLHKVGLGDLAERLDE 508
Query: 975 L-PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1033
LS +++RL A L+ P +F+DE TS LD + + ++ + TV
Sbjct: 509 EDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATV 567
Query: 1034 VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066
+ H+P + F + +L L+ G + P
Sbjct: 568 ISVGHRPTLWNFHS-RQLELLDDAGGQNLKPPA 599
|
Length = 604 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQET 911
L+ +S + G + AL+G +G+GK+TL+ ++G +G I I G E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 912 FARISGYCEQ 921
R GY Q
Sbjct: 71 LRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 62/251 (24%), Positives = 102/251 (40%), Gaps = 53/251 (21%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
K +LK VS I G + ++G SGK+TLL L G LD+ SG V +NG +
Sbjct: 15 KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNP--TSGEVLFNGQSLS- 70
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
N ++ + L F + + LL + EN
Sbjct: 71 ----------KLSSNERAKLR-NKKLGF------IYQFHHLLPDFTALEN---------- 103
Query: 282 DVYMKAIAT--EGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
V M + +EA L+ +GLE + + +SGGER+RV +V
Sbjct: 104 -VAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSE-----LSGGERQRVAIARALV 157
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FD 393
P+L + DE + LD++ +I+ L ++ T+ + + T+DL D
Sbjct: 158 NQPSL-VLADEPTGNLDNNNA-KIIFDLMLELNRELNTSFLVV------THDLELAKKLD 209
Query: 394 DIILLSDGQIV 404
++ + DGQ+
Sbjct: 210 RVLEMKDGQLF 220
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 6e-07
Identities = 51/192 (26%), Positives = 85/192 (44%), Gaps = 20/192 (10%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISGYPKKQETF- 912
LN ++ +TAL+G SG GK+T + L+ G I GN+ G F
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 913 ----ARISGYCEQNDIHSPFV-TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q +PF+ ++Y+++ Y P++ K ++E++E K
Sbjct: 83 ILELRRKIGMVFQTP--NPFLMSIYDNISYG------PKIHGTKDKKKLDEIVEQSLKKS 134
Query: 968 LIQSLVGLP---GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ + V LS Q++RL IA L P++I MDEPTS LD + + +
Sbjct: 135 ALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194
Query: 1025 NTVDTGRTVVCT 1036
N ++ ++ T
Sbjct: 195 NLKESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 7e-07
Identities = 47/224 (20%), Positives = 77/224 (34%), Gaps = 49/224 (21%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ + +S + G + GP GKTTLL LAG L SG V +NG + E
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP---DSGEVRWNGTALAEQRD 69
Query: 225 ERT--AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E Y+ E++ E L F A G G++ + LA
Sbjct: 70 EPHRNILYLGHLPGLKPELSALENLHFWAAIHG-GAQRTIEDALAA-------------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+GL D +S G+++R+ + + A
Sbjct: 115 -----------------------VGLTGFEDLPAAQ-----LSAGQQRRLALARLWLSRA 146
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
+DE +T LD + + L+ H+ G +++ Q
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDLG 189
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 7e-07
Identities = 56/210 (26%), Positives = 96/210 (45%), Gaps = 41/210 (19%)
Query: 865 RPGVLTALMGVSGAGKTTL-------MDVLSGRKTGGYITGNITISGYPKKQETFARISG 917
+PG + G +G+GK++L +D+ G+ + I IS P +R+S
Sbjct: 45 KPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK----IVIDGIDISKLPL-HTLRSRLS- 98
Query: 918 YCEQNDIHSPFVTVYESLLYSAWLR--LPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ + + +L+S +R L PE +++ E +E+ +LK +++SL G
Sbjct: 99 -----------IILQDPILFSGSIRFNLDPECKCTDDRLW--EALEIAQLKNMVKSLPG- 144
Query: 976 PGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
G+ + TE QR+ +A V SI+ MDE T+ +D I+ + V T
Sbjct: 145 -GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVM-TA 202
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
RTVV H+ I DA D + ++ RG
Sbjct: 203 FADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-07
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1044
++RL IA LV P ++FMDEPT GLD A ++ +R V D G V+ H G+
Sbjct: 154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVAR 213
Query: 1045 FDAFDELFLMKRG 1057
A L +M++G
Sbjct: 214 LLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 20/156 (12%)
Query: 869 LTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQETFA--RISGYCE 920
+TAL+G SG GK+T + L+ + I G + + G Y K + + G
Sbjct: 32 ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVF 91
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG---LP 976
Q +PF +++Y+++ Y P + K +++++E K + V
Sbjct: 92 QKP--NPFPMSIYDNVAYG------PRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKK 143
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS Q++RL IA + P +I MDEPTS LD
Sbjct: 144 SALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 9e-07
Identities = 56/258 (21%), Positives = 91/258 (35%), Gaps = 69/258 (26%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------ 221
+ V+ ++ G + LGP +GKTT + L L + SG G+D+
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVR 65
Query: 222 ----FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
VP+ + ++T RE L R G L + E E +
Sbjct: 66 RSIGIVPQYASVDE--------DLTGRENLEMMGRLYG----------LPKDEAEERAEE 107
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
L++ L D + SGG R+R+
Sbjct: 108 ------------------------LLELFEL-----GEAADRPVGTYSGGMRRRLDIAAS 138
Query: 338 MVGPALALFMDEISTGLDSST---TFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
++ LF+DE +TGLD T + + LK+ G ++ E L D
Sbjct: 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-----EGVTILLTTHYMEEADKLCDR 193
Query: 395 IILLSDGQIVYQG-PREL 411
I ++ G+I+ +G P EL
Sbjct: 194 IAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 26/217 (11%)
Query: 840 MPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT 897
M E+K G L +LN +S + R G A+ G SG GK+TL+ +++ T G +
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 898 --GNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 955
G +S K E + + YC Q TV ++L++ +R R
Sbjct: 62 FEGE-DVSTL--KPEAYRQQVSYCAQTPALFG-DTVEDNLIFPWQIR----NRRPDRAAA 113
Query: 956 IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
++ ++ L I + ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD-LLARFALPDSILT----KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1016 A----AIVMRTVRNTVDTGRTVVCTIHQP--GIDIFD 1046
++ R VR + V+ H I D
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDKDQAIRHAD 202
|
Length = 223 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 9e-07
Identities = 43/161 (26%), Positives = 71/161 (44%), Gaps = 13/161 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ--ET 911
+N S G + +MG+SG+GK+TL+ +L+ T G I I+ + E
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ Q+ P TV E++ + ++ P+ + E R E +ELV L+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREER---ALEALELVGLEGYADK 160
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 161 YPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALD 196
|
Length = 386 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 47/177 (26%), Positives = 75/177 (42%), Gaps = 56/177 (31%)
Query: 866 PGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQETFARISGY 918
+TAL+G SG GK+T + D++ K I G + + G Q+ Y
Sbjct: 28 ENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG----QDI------Y 73
Query: 919 CEQNDIHS-------------PF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV- 963
D++ PF +++Y+++ Y P K ++E++E
Sbjct: 74 KSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG------PRTHGIKDKKKLDEIVEKSL 127
Query: 964 -------ELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
E+K L +S +GL G Q++RL IA L P ++ MDEPTS LD
Sbjct: 128 KGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 57/251 (22%), Positives = 96/251 (38%), Gaps = 59/251 (23%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF 222
+L D+S +K G + LGP +GKTT + + G + SG +T++G +
Sbjct: 11 GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKN 67
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R A I + +T RE L AR G+
Sbjct: 68 IEALRRIGALIEAPGFY-PNLTARENLRLLARLLGI--------------------RKKR 106
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
ID L V+GL+ + ++G S G ++R+ ++G
Sbjct: 107 IDE------------------VLDVVGLKD-----SAKKKVKGFSLGMKQRLGIALALLG 143
Query: 341 -PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV-IS--LLQPAPETYDLFDDII 396
P L L +DE + GLD ++ + + G V IS LL E + D I
Sbjct: 144 NPDL-LILDEPTNGLDPDGIKELRELI--LSLRDQGITVLISSHLLS---EIQKVADRIG 197
Query: 397 LLSDGQIVYQG 407
+++ G+++ +G
Sbjct: 198 IINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 62/256 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+DVS I G L GP +GK+TLL + G+ + G++ NGHD+ + R
Sbjct: 17 ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSR-LKGR 72
Query: 227 TAAYISQH------DNH-IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
++ + D + + TV E +A R G R E+ RR +E
Sbjct: 73 EIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPR-----EIRRRVSEV------ 121
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L ++GL+ A + +SGGE++RV +V
Sbjct: 122 -----------------------LDLVGLKHKARALPSQ-----LSGGEQQRVAIARAIV 153
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLLQPAPETYDLFDD---- 394
L DE + LD +++I+ ++ IN GT V+ A +L +
Sbjct: 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEE---INRLGTTVLM----ATHDLELVNRMRHR 206
Query: 395 IILLSDGQIVYQGPRE 410
++ L DG++V R
Sbjct: 207 VLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVPE 225
ILK V+ IK G + L+GP SGK+TL + G +V G + + G D+ + PE
Sbjct: 15 ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMG--HPKYEVTEGEILFKGEDITDLPPE 72
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 13/101 (12%)
Query: 323 GISGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
G SGGE+KR ++++ P LA+ DE +GLD + + + +I+
Sbjct: 104 GFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 382 LQPAPETYDLFDDII-----LLSDGQIVYQGPRELVLEFFE 417
Q L D I +L DG+IV G +EL LE +
Sbjct: 163 YQ------RLLDYIKPDRVHVLYDGRIVKSGDKELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 65/212 (30%), Positives = 97/212 (45%), Gaps = 25/212 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQN 922
RP + ALMG +GAGK+TL+ L G +K +G+I G +E + S +N
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFKSSKEALEN 73
Query: 923 DI---HSPFVTVYE-SLLYSAWL-RLPPE---VDSETRKMFIEEVMELVELKPLIQSLVG 974
I H V + S++ + WL R P + VD + KM+ + EL I
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQD--KMYRDTKAIFDELDIDIDPRAK 131
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
V+ LS Q + + IA N I+ MDEPTS L + + +R + G +V
Sbjct: 132 ---VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIV 188
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066
H+ +IF DE+ ++ R GQ I PL
Sbjct: 189 YISHKME-EIFQLCDEITIL-RDGQWIATQPL 218
|
Length = 491 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 50/182 (27%), Positives = 80/182 (43%), Gaps = 21/182 (11%)
Query: 871 ALMGVSGAGKTTLMDVL--------SGRKTGG---YITGNI-TISGYPKKQETFARISGY 918
+MG SG+GK+TL+ VL S K G Y +I I ++E G
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEV-----GM 94
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
Q P +++Y+++ Y L+ + K +EE + V L + + P
Sbjct: 95 VFQQPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPA- 151
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
S LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H
Sbjct: 152 SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSH 210
Query: 1039 QP 1040
P
Sbjct: 211 NP 212
|
Length = 257 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 70/258 (27%), Positives = 110/258 (42%), Gaps = 46/258 (17%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
IL D+S IK T ++G SGK+TL L G + SG + NG + + +R
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDI--DR 543
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q N++ + E FS GS E L G K + D
Sbjct: 544 HT--LRQFINYLPQ----EPYIFS------GSILENLL--------LGAKENVSQDEIWA 583
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
A A + D LG T + +E ISGG+++R+ ++ + L
Sbjct: 584 ACEI----AEIKDDIENMPLGY----QTELSEEG-SSISGGQKQRIALARALLTDSKVLI 634
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTA--VISLLQPAPETYDLFDDIILLSDGQIV 404
+DE ++ LD+ T +IVN L +++ T V L A ++ D II+L G+I+
Sbjct: 635 LDESTSNLDTITEKKIVNNL---LNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKII 687
Query: 405 YQGP-RELVLE--FFESM 419
QG EL+ F+ S+
Sbjct: 688 EQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 42/194 (21%), Positives = 69/194 (35%), Gaps = 62/194 (31%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ +L+D++ ++ G +LGP GK+TLL +AG + SG V +G + P
Sbjct: 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGPGP 72
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+ Y+ Q D + +TV + +A +G
Sbjct: 73 DI--GYVFQEDALLPWLTVLDNVALGLELRGKSKA------------------------- 105
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
EA L+++GL D +SGG R+RV A+A
Sbjct: 106 ---------EARERAKELLELVGLAGFEDKYPHQ-----LSGGMRQRV---------AIA 142
Query: 345 ---------LFMDE 349
L +DE
Sbjct: 143 RALATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 2e-06
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ ++S + PG + LLGP +GKTT + G L+ + G +T+NG + + +
Sbjct: 16 KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKN 72
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
R Y+ + +MTV + L + A +G+
Sbjct: 73 RI-GYLPEERGLYPKMTVEDQLKYLAELKGM 102
|
Length = 300 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 10/102 (9%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLL--LALAGKLDSSLKVSGRVTYNGHD- 218
KH LKD++ I ++T L+GP GK+TLL L L +V G V +G +
Sbjct: 19 DKH--ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNI 76
Query: 219 --MGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGV 256
V E R + Q N M++ + +A+ R G+
Sbjct: 77 YDPKVDVVELRRRVGMVFQKPNPF-PMSIYDNVAYGLRLHGI 117
|
Length = 253 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-06
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 49/248 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK V+ + PG + LLG +GK+TL+ L+G + + G +T N + + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLA 77
Query: 228 A----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID- 282
A I Q + I E+TV E L + R LT + G+ ID
Sbjct: 78 AQLGIGIIYQELSVIDELTVLENL-YIGR---------HLT-----KKVCGV---NIIDW 119
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
M+ A L +GL+V D V + +S ++ + + ++ A
Sbjct: 120 REMRVRAAM----------MLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLMLDA 164
Query: 343 LALFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399
+ MDE ++ L + F I+N L+ GTA++ + E + D ++
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLR-----KEGTAIVYISHKLAEIRRICDRYTVMK 219
Query: 400 DGQIVYQG 407
DG V G
Sbjct: 220 DGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-06
Identities = 55/240 (22%), Positives = 96/240 (40%), Gaps = 47/240 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L+D++ ++ G + ++LGP GKTTLL +AG + G +T +G + ER
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAER 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ Q++ + V++ +AF + GV +R A
Sbjct: 73 GVVF--QNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIA------------- 109
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ LK +GLE I +SGG+R+RV + L
Sbjct: 110 ------HQM-------LKKVGLE-----GAEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQIV 404
+DE LD+ T Q+ L + +G V+ + E + +++LLS G++V
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 56/259 (21%), Positives = 93/259 (35%), Gaps = 68/259 (26%)
Query: 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA-- 228
+S ++ G + L+GP +GK+TLL +AG L SG + + G + + A
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 229 -AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
AY+SQ M V + L ++
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLT----------------------------------LHQPD 96
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI---SGGE--RKRVTTGEMMVGPA 342
A+ + EV + D++ R + SGGE R R+ + V P
Sbjct: 97 KTRTEAVASALN---------EVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPD 147
Query: 343 L-----ALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+ L +DE LD + ++++ L Q G AV+ T D
Sbjct: 148 INPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-----QGIAVVMSSHDLNHTLRHADR 202
Query: 395 IILLSDGQIVYQGPRELVL 413
+ LL G+++ G R+ VL
Sbjct: 203 VWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 53/182 (29%), Positives = 83/182 (45%), Gaps = 29/182 (15%)
Query: 847 QGVLE---DKLVLLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLSGRKTGGYITGN 899
+G+L+ D V++ +S RPG L+G SG+GK+T L+ +++ + G
Sbjct: 289 KGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GE 341
Query: 900 ITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL-PPEVDSE 950
I G P R ++ I F SL + LR+ P + +
Sbjct: 342 IWFDGQPLHN--LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA 399
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
R+ + VME V L P ++ P + S QR+R+ IA L+ PS+I +DEPTS
Sbjct: 400 QREQQVIAVMEEVGLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSS 455
Query: 1011 LD 1012
LD
Sbjct: 456 LD 457
|
Length = 529 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDI 1044
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H +
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVAR 216
Query: 1045 FDAFDELFLMKRG 1057
A L +MK+G
Sbjct: 217 LLA-HRLLVMKQG 228
|
Length = 258 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 44/205 (21%), Positives = 70/205 (34%), Gaps = 47/205 (22%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234
+ G L+ G +GKTTLL LAG L SG++ +G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLG-- 88
Query: 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI-ATEGQ 293
H+ G+K D + + G+
Sbjct: 89 --HLP----------------------------------GLKADLSTLENLHFLCGLHGR 112
Query: 294 EANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353
A + L ++GL DT+V R +S G++KR+ + + PA +DE
Sbjct: 113 RAKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYAN 167
Query: 354 LDSSTTFQIVNCLKQHVHINSGTAV 378
LD + + H+ V
Sbjct: 168 LDLEGITLVNRMISAHLRGGGAALV 192
|
Length = 214 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 35/181 (19%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
L+ +N ++ R + +L+G +GAGKTT+ + L+G + TGG I I G P Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 910 ------ETFARISGYCEQNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETR 952
TF + + E +TV E+LL +S L+ P +E+
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 953 KM-FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ +E V L G L+ Q++RL IA +V P I+ +DEP +GL
Sbjct: 130 ALDRAATWLERVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGL 184
Query: 1012 D 1012
+
Sbjct: 185 N 185
|
Length = 255 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 3e-06
Identities = 54/195 (27%), Positives = 76/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
++ D+S I G LLGP +GK+T+ L G + G++T +GE VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ Q DN E TVRE L R G ++ RE EA I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+ LE AD V +SGG ++R+T ++
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 153 DPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 66/259 (25%), Positives = 112/259 (43%), Gaps = 67/259 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL---DSSLKVSGR-VTYNGHDMGEFV 223
LK ++ + G M LLGP +GK+TL L G L + + G + Y+ + E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 224 PERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+T + Q+ D+ + TV E +AF G+ E+ +R EA
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGP 341
+KA+ EG E ++ +SGG++KRV G + + P
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG--TAVISLLQPAPETYDL------FD 393
+ + +DE ++GLD QI+ L +N T +IS T+D+ D
Sbjct: 157 EI-IVLDEPTSGLDPMGASQIMKLLYD---LNKEGITIIIS-------THDVDLVPVYAD 205
Query: 394 DIILLSDGQIVYQG-PREL 411
+ ++SDG+I+ +G P+E+
Sbjct: 206 KVYVMSDGKIIKEGTPKEV 224
|
Length = 275 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 56/205 (27%), Positives = 80/205 (39%), Gaps = 41/205 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L+IL V ++K G L+G SGK+TLL LAG D S SG V+ G + +
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDE 79
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN---EAGIKPDPDI 281
E A ++H + F V + L+ L EN A ++ +
Sbjct: 80 EARAKLRAKH------------VGF------VFQSFMLIPTLNALENVELPALLRGESSR 121
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
A A L+ LGL D + +SGGE++RV G
Sbjct: 122 QSRNGAKA------------LLEQLGLGKRLDHLPAQ-----LSGGEQQRVALARAFNGR 164
Query: 342 ALALFMDEISTGLDSSTTFQIVNCL 366
LF DE + LD T +I + L
Sbjct: 165 PDVLFADEPTGNLDRQTGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 39/166 (23%), Positives = 76/166 (45%), Gaps = 25/166 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
++ L G L+G SG GKTT++ +++G +T +G I + G + +
Sbjct: 30 ISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVP 82
Query: 917 GYCEQNDIHS--------PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E +++ P +TV+E++ + ++ P + R + E + +V+L+
Sbjct: 83 A--ENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEF 137
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
Q LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 138 AQR-----KPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 50/212 (23%), Positives = 85/212 (40%), Gaps = 56/212 (26%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYI--TGNITISGYP-- 906
E + +L LS + G AL+G SG+GK+TL+ +L TG G IT+ G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLL----TGDLKPQQGEITLDGVPVS 67
Query: 907 KKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
++ + + Q P+ L+ LR
Sbjct: 68 DLEKALSSLISVLNQ----RPY-------LFDTTLR------------------------ 92
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ +
Sbjct: 93 ----NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE- 143
Query: 1027 VDTGRTVV-CTIHQPGIDIFDAFDELFLMKRG 1057
V +T++ T H GI + D++ ++ G
Sbjct: 144 VLKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 3e-06
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 29/153 (18%)
Query: 870 TALMGVSGAGKTTLMDVLSG--RKTGGYITGN--------ITISGYPKKQETFARISGYC 919
TA+ G SGAGKT+L++ +SG R G I N I P+K+ RI GY
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKR----RI-GYV 81
Query: 920 EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q+ P V +L Y + F ++++ L+ ++PL L P
Sbjct: 82 FQDARLFPHYKVRGNLRYG--------MAKSMVAQF-DKIVALLGIEPL---LDRYP--G 127
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 20/166 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP------KK 908
LN +S + + G AL+G SG GK+TL +L G + G N++ G P +
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG----NVSWRGEPLAKLNRAQ 83
Query: 909 QETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
++ F R Q+ I + P TV E + LR +D R E++ V+L
Sbjct: 84 RKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLD 141
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 142 DSVLD--KRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 3e-06
Identities = 37/187 (19%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
R G + L+G +G GK+T + +L+G+ + N+ G + I +++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGK-----LKPNL---GKFDDPPDWDEILDEFRGSEL 75
Query: 925 HSPFVTVYESLLYSAWL-----RLPPEVDSETRKM--------FIEEVMELVELKPLIQS 971
+ F + E + +P V + ++ ++E+++ +EL+ ++
Sbjct: 76 QNYFTKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
+ LS + +R+ IA L + F DEP+S LD + R +R +
Sbjct: 136 -----NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDN 190
Query: 1032 TVVCTIH 1038
V+ H
Sbjct: 191 YVLVVEH 197
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-06
Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 45/252 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S + G A++G +G+GK+TL +L+G G IT+ G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 915 IS---GYCEQNDIHSP---FV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ G QN P FV TV + + + E R+ +E V + +
Sbjct: 79 VRRQVGMVFQN----PDNQFVGATVQDDVAFGL------ENIGVPREEMVERVDQALRQV 128
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ L P LS Q++R+ IA L P II +DE TS LD R V+ TVR
Sbjct: 129 GMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQL 186
Query: 1027 VDTGR-TVVCTIHQPGIDIFDAF--DELFLMKRGG-------QEIYVGPLGRHSCQLISY 1076
+ TV+ H D+ +A D + +M +G +EI+ + L
Sbjct: 187 KEQKGITVLSITH----DLDEAAQADRVIVMNKGEILEEGTPEEIF-----KSGHMLQEI 237
Query: 1077 FEAIPGVEKIKD 1088
+P K+K+
Sbjct: 238 GLDVPFSVKLKE 249
|
Length = 279 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-06
Identities = 50/179 (27%), Positives = 70/179 (39%), Gaps = 36/179 (20%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
D L ++G+S R G L+G SG+GK+TL L G I G +K+
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKE 357
Query: 910 ETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRL--PPEVDSETRKMFIEEV 959
R + F Y SL + LR+ P +E + IE +
Sbjct: 358 MRPLR-------RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEAL 410
Query: 960 MELVELKPLIQSLVGLPGVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
E VGL + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 411 EE-----------VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (123), Expect = 4e-06
Identities = 52/187 (27%), Positives = 91/187 (48%), Gaps = 23/187 (12%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FARIS 916
L+ F +TA +G +GAGKTT + +L+G +G + + G K ET R S
Sbjct: 949 LNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGG--KDIETNLDAVRQS 1004
Query: 917 -GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
G C Q++I +TV E +L+ A L+ E ++ +E ++E L
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNE---- 1057
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTVRNTVDTGRT 1032
LS +++L++A+ V + ++ +DEPTSG+D R+ ++ R +GRT
Sbjct: 1058 -EAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR----SGRT 1112
Query: 1033 VVCTIHQ 1039
++ + H
Sbjct: 1113 IIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 68/261 (26%), Positives = 108/261 (41%), Gaps = 57/261 (21%)
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--------MG 220
+DVS + PG + ++G SGKTTLL ++G+L +G VTY D M
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 221 EFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
E ER ++ Q+ M V R +G+R+
Sbjct: 80 E--AERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARH-------------- 123
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
Y I E Q+ +L+ EV D D++ R SGG ++R+
Sbjct: 124 ---------YGN-IRAEAQD-------WLE----EVEIDLDRIDDLPRTFSGGMQQRLQI 162
Query: 335 GEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
+V P L +FMDE + GLD S ++++ L+ V G AV+ + L D
Sbjct: 163 ARNLVTRPRL-VFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARLLAD 220
Query: 394 DIILLSDGQIVYQGPRELVLE 414
++++ GQ+V G + VL+
Sbjct: 221 RLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 55/173 (31%), Positives = 82/173 (47%), Gaps = 41/173 (23%)
Query: 870 TALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQ---ETFARIS 916
TA +G SG GK+T + D + G + +TG IT+ G Y + E AR+
Sbjct: 48 TAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDGEDIYDPRLDVVELRARV- 102
Query: 917 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETR-KMFIEEVME--------LVELK 966
G Q +PF ++YE++ Y P + R K ++E++E E+K
Sbjct: 103 GMVFQKP--NPFPKSIYENVAYG------PRIHGLARSKAELDEIVETSLRKAGLWEEVK 154
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
+ PG +GLS Q++RL IA + +P +I MDEP S LD A A V
Sbjct: 155 DRLHE----PG-TGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 34/163 (20%)
Query: 869 LTALMGVSGAGKTTLMDVLS-------GRKTGG---YITGNITISGYPKKQETFARISGY 918
+TA++G SG GK+T + L+ KT G Y NI Y +E +
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 919 CEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--------ELKPLI 969
++ + PF ++Y+++ Y P++ K ++E++E ELK +
Sbjct: 111 FQKPN---PFPKSIYDNVTYG------PKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL 161
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
GLS Q++RL IA L P +I MDEPTS LD
Sbjct: 162 HD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 52/195 (26%), Positives = 76/195 (38%), Gaps = 52/195 (26%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
++ +S + G LLGP +GK+T+ + G +G++T +G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 227 TAA------YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ Q DN E TVRE L V RY ++ RE EA I
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLL-------VFGRY---FGMSTREIEAVIPS--- 155
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L+ LE AD V D +SGG ++R+T ++
Sbjct: 156 ---------------------LLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 341 PALALFMDEISTGLD 355
L +DE +TGLD
Sbjct: 190 DPQLLILDEPTTGLD 204
|
Length = 340 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-06
Identities = 54/186 (29%), Positives = 93/186 (50%), Gaps = 24/186 (12%)
Query: 863 AFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCE 920
G + A++G SGAGK+TL+++++G +T +G I I+G A +S +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQ 78
Query: 921 QNDIHSPFVTVYES--LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
+N++ + +TV ++ L S L+L ++E R+ +E V L ++ L PG
Sbjct: 79 ENNLFA-HLTVAQNIGLGLSPGLKL----NAEQREK-VEAAAAQVGLAGFLKRL---PGE 129
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVV 1034
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 --LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLL 184
Query: 1035 CTIHQP 1040
H P
Sbjct: 185 MVTHHP 190
|
Length = 231 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 62/250 (24%), Positives = 93/250 (37%), Gaps = 65/250 (26%)
Query: 177 PGR-MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG---HDM--GEFVP--ERTA 228
P R +T L GP SGKT+L+ +AG GR+ NG D G F+P +R
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRI 78
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
Y+ Q TVR L + M
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYG----------------------------------MWKS 104
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGPALALFM 347
D + +LG+E D G +SGGE++RV G ++ P L L M
Sbjct: 105 MRAQ------FDQLVALLGIEHLLDRYPGT-----LSGGEKQRVAIGRALLTAPEL-LLM 152
Query: 348 DEISTGLDSSTTFQIVNCLK---QHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
DE LD +I+ L+ ++I ++ + E L D +++L +G++
Sbjct: 153 DEPLASLDLPRKREILPYLERLRDEINI----PILYVSHSLDEVLRLADRVVVLENGKVK 208
Query: 405 YQGPRELVLE 414
GP E V
Sbjct: 209 ASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 5e-06
Identities = 71/287 (24%), Positives = 121/287 (42%), Gaps = 75/287 (26%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGE 221
+LK +S ++ G + +++GP SGK+TLL L G + D SG +T +G D+G
Sbjct: 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD-----SGSITVDGEDVG- 67
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL---LTELARREN--EAGIK 276
I ++ R + V ++ L LT L EN A
Sbjct: 68 ------------DKKDILKL--RRKVGM------VFQQFNLFPHLTVL---ENVTLA--- 101
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
P +K EA L+ +GL AD +SGG+++RV
Sbjct: 102 P-------VKVKKLSKAEAREKALELLEKVGLADKADAYPA-----QLSGGQQQRVAIAR 149
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-F-- 392
+ + P + LF DE ++ LD ++++ +K G +I + T+++ F
Sbjct: 150 ALAMDPKVMLF-DEPTSALDPELVGEVLDVMKDLA--EEGMTMIIV------THEMGFAR 200
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
D +I + G+I+ +GP E EFF++ PK + FL ++
Sbjct: 201 EVADRVIFMDQGKIIEEGPPE---EFFDN-----PKSERTRQFLSKI 239
|
Length = 240 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 5e-06
Identities = 61/223 (27%), Positives = 85/223 (38%), Gaps = 50/223 (22%)
Query: 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
+L +VS I G M ++G SGK+TLL L G LD+ SG V +NG M +
Sbjct: 19 SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTP--TSGDVIFNGQPMSK 75
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA------GI 275
A E+ ++ L F + + LL + EN A
Sbjct: 76 LSSAAKA-----------ELRNQK-LGF------IYQFHHLLPDFTALENVAMPLLIGKK 117
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
KP E N L +GLE A+ + +SGGER+RV
Sbjct: 118 KP---------------AEINSRALEMLAAVGLEHRANHRPSE-----LSGGERQRVAIA 157
Query: 336 EMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
+V P L L DE + LD+ I L ++ GTA
Sbjct: 158 RALVNNPRLVL-ADEPTGNLDARNADSIFQLL-GELNRLQGTA 198
|
Length = 233 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-06
Identities = 54/197 (27%), Positives = 85/197 (43%), Gaps = 34/197 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L GL+ PG + AL+G SG+GK+T+ +L + TGG + + G P Q
Sbjct: 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ----- 547
Query: 915 ISGYCEQNDIHSPFVTV-YESLLYSAWLRLPPEVDSETRKMFIEEVMELV---------- 963
+ + +H V E +L+S +R + EE+M
Sbjct: 548 ----YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHDFIM 601
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
E + VG G S LS Q++R+ IA LV P ++ +DE TS LDA + +
Sbjct: 602 EFPNGYDTEVGEKG-SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQLL 656
Query: 1024 RNTVDT-GRTVVCTIHQ 1039
+ + RTV+ H+
Sbjct: 657 QESRSRASRTVLLIAHR 673
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 32/211 (15%)
Query: 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889
FD+V +S D QGV +S +PG A++G +GAGK+TL+++L
Sbjct: 336 EFDDVSFSYDN----SRQGV--------EDVSFEAKPGQTVAIVGPTGAGKSTLINLL-- 381
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLY----SAWLRL-- 943
++ +G I I G I + + V ++ L+ +R+
Sbjct: 382 QRVFDPQSGRILIDG--------TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGR 433
Query: 944 PPEVDSETRKMF-IEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
P D E R + + +E KP ++VG G LS +R+RL IA L+ +P I
Sbjct: 434 PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPI 492
Query: 1002 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+ +DE TS LD A V + + + GRT
Sbjct: 493 LILDEATSALDVETEAKVKAAL-DELMKGRT 522
|
Length = 588 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 50/166 (30%), Positives = 78/166 (46%), Gaps = 16/166 (9%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQ 909
+ LN +S G + ++G SGAGK+TL+ ++L +G I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 910 ETFARIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
T AR G Q N + S TV+ ++ LP E+D+ + +V EL+ L
Sbjct: 77 LTKARRQIGMIFQHFNLLSSR--TVFGNV------ALPLELDNTPKDEIKRKVTELLALV 128
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L P S LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 129 GLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 53/254 (20%), Positives = 98/254 (38%), Gaps = 44/254 (17%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDMGE---- 221
+K+V+ ++ G + L+GP GKTT L A+ L +V+GR+ +G D+
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 222 -FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
R + Q N M+V + + + G+ R L+ E+A R D +
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLM-EVAERSLRGAALWD-E 137
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
+ +K AT G+SGG+++R+ +
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE ++ LD ++T +I + + + T +I + + + D
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTD---LKKVTTIIIVTHNMHQAARVSDTTSFFLV 222
Query: 401 GQIVYQGPRELVLE 414
G +V GP + +
Sbjct: 223 GDLVEHGPTDQLFT 236
|
Length = 252 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-06
Identities = 46/162 (28%), Positives = 82/162 (50%), Gaps = 11/162 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT-ISGYPKKQETF 912
+LN +S G + AL+G SG+GKTTL+ +++G +T G+I + T +S +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARD--- 73
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G+ Q+ +TV++++ + L + P + +V +L+E+ L
Sbjct: 74 -RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 131 DRYP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 7e-06
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 12/193 (6%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISGYPKKQ 909
+L+ + G + ++G SG+GK+TL+ + L +G I + ++ PK
Sbjct: 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVD 71
Query: 910 ETFARI-SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
E R +G Q P +T E++++ P V +++ ++ EL+ L
Sbjct: 72 ERLIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGL 126
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ +
Sbjct: 127 AERAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184
Query: 1029 TGRTVVCTIHQPG 1041
G T+V H+ G
Sbjct: 185 EGMTMVIVTHEIG 197
|
Length = 240 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-06
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK----QETF 912
L+G+ RPG L G +GAGK+TLM +LSG G G I SG P K ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 913 ARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQS 971
Q P ++V E++ + LP + + + ++ ++L +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVT 136
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 137 R----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD 186
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 8e-06
Identities = 54/206 (26%), Positives = 89/206 (43%), Gaps = 17/206 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L ++ + G ++G +G+GK+TL L+G R G + + +G K + +
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRK 77
Query: 915 ISGYCEQNDIHSPFV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ G QN + FV TV E L + L LPP E RK + E+ K +S
Sbjct: 78 LVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPP---IEIRKRVDRALAEIGLEKYRHRS 133
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
L G G + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 134 PKTLSGGQG------QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
T+V H ++ D + +M RG
Sbjct: 188 TIVYITHN--LEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 9e-06
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 154 YLGILPSRKK--HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGR 211
YL I RK+ T LKD+S +K G LLGP GKTTLL +AG L+ + +G
Sbjct: 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LE--RQTAGT 60
Query: 212 VTYNGHDMGEFVPER 226
+ G D+ P++
Sbjct: 61 IYQGGRDITRLPPQK 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 65/282 (23%), Positives = 115/282 (40%), Gaps = 46/282 (16%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTL---LLALAGKLDSSLKVSGRVTYNGH 217
R LT+L ++ + G L+GP SGK+T+ L+ L + ++V G Y+
Sbjct: 9 RFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMP 68
Query: 218 D-MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
G VP ++ Q N IG M + F + + EA
Sbjct: 69 GRNGPLVPA-DEKHLRQMRNKIG-MVFQSFNLFPHKT------------VLDNVTEA--- 111
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
V + +A E + L ++GL AD M +SGG+++RV
Sbjct: 112 -----PVLVLGMARAEAEKRAME--LLDMVGLADKADHMPAQ-----LSGGQQQRVAIAR 159
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+ + P + LF DE+++ LD +++N +++ + T ++ + + D +
Sbjct: 160 ALAMRPKVMLF-DEVTSALDPELVGEVLNVIRRLASEHDLTMLL-VTHEMGFAREFADRV 217
Query: 396 ILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV QG P E+ F+ PK + +FL +V
Sbjct: 218 CFFDKGRIVEQGKPDEI---------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 64/249 (25%), Positives = 98/249 (39%), Gaps = 43/249 (17%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNGHDMGEFVP 224
+L +++ IKPG ++GP SGK+TL KL L G+V +G D+ P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-----TKLLQRLYTPQHGQVLVDGVDLAIADP 526
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R R GV + +L + R+N A P +
Sbjct: 527 ----------------AWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHV 563
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ A G + L +T VG E +SGG+R+R+ +VG
Sbjct: 564 IHAAKLAGAHDFIS--------ELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L DE ++ LD + I+ +++ I G VI + T D II+L GQI
Sbjct: 615 LIFDEATSALDYESEALIMRNMRE---ICRGRTVIIIAHRL-STVRACDRIIVLEKGQIA 670
Query: 405 YQGPRELVL 413
G E +L
Sbjct: 671 ESGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 61/258 (23%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L V ++ G + L+GP +GKTTLL A+ G L + +G V G D V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDD----VEA 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID--V 283
+A S+ + + T +L+F + V E+ R + + + D
Sbjct: 70 LSARAASRRVASVPQDT---SLSFEFDVRQV-------VEMGRTPHRSRFDTWTETDRAA 119
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+A+ G D + +SGGER+RV ++ AL
Sbjct: 120 VERAMERTGVAQFA--------------------DRPVTSLSGGERQRV-----LLARAL 154
Query: 344 A-----LFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
A L +DE + LD T ++V L ++ G ++ + D++
Sbjct: 155 AQATPVLLLDEPTASLDINHQVRTLELVRRL-----VDDGKTAVAAIHDLDLAARYCDEL 209
Query: 396 ILLSDGQIVYQGPRELVL 413
+LL+DG++ GP VL
Sbjct: 210 VLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 51/224 (22%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ +S + G + GP SGKTTLL LAG S ++GRV NG +
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAG---LSPPLAGRVLLNGGPLDFQRD 69
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R Y+ ++V E L F S ++ LAR
Sbjct: 70 SIARGLLYLGHAPGIKTTLSVLENLRFWHA---DHSDEQVEEALAR-------------- 112
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+GL D + +S G+++RV +++
Sbjct: 113 -----------------------VGL-----NGFEDRPVAQLSAGQQRRVALARLLLSGR 144
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
+DE +T LD + + + H G V++ Q
Sbjct: 145 PLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQDLG 187
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 1e-05
Identities = 66/248 (26%), Positives = 98/248 (39%), Gaps = 66/248 (26%)
Query: 177 PGRMTLLLGPPASGKTTLL---LALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQ 233
G + LLGP +GKTTLL L L ++KV+G G +VP+R
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR------- 57
Query: 234 H----DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
H D I +V T+ S R +G RR A
Sbjct: 58 HEFAWDFPI---SVAHTV-MSGRTGHIG--------WLRRPCVADFAA------------ 93
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA----- 344
L+ +GL AD VG+ +SGG+R+RV +V ALA
Sbjct: 94 ---------VRDALRRVGLTELADRPVGE-----LSGGQRQRV-----LVARALATRPSV 134
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404
L +DE TGLD T + + +GTA++ + D ++LL +G+++
Sbjct: 135 LLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLAQAMATCDRVVLL-NGRVI 191
Query: 405 YQG-PREL 411
G P++L
Sbjct: 192 ADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 28/206 (13%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG--------- 904
L +L+GL+ + G AL+G SG+GK+T++ +L + G I + G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGR 70
Query: 905 ----YPKKQETFARIS---GYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFI 956
P ++ ++ G Q+ P TV +++ + L L ++E R
Sbjct: 71 NGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKR---- 126
Query: 957 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016
MEL+++ L +P + LS Q++R+ IA L P ++ DE TS LD
Sbjct: 127 --AMELLDMVGLADKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELV 182
Query: 1017 AIVMRTVRN-TVDTGRTVVCTIHQPG 1041
V+ +R + T++ H+ G
Sbjct: 183 GEVLNVIRRLASEHDLTMLLVTHEMG 208
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 1e-05
Identities = 52/189 (27%), Positives = 81/189 (42%), Gaps = 13/189 (6%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSG-RKTGGYITGNITISGYPK 907
+L+ +S F +T+LMG +G+GKTT + D +SG R +G + G +I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
E F R G Q P + L +L P E R + + E+
Sbjct: 96 VLE-FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPR--KEFRGVAQARLTEVGLWDA 152
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ L P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1028 DTGRTVVCT 1036
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 19/165 (11%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVL--------SGRKTGGYITGNITISGYPKKQE- 910
+S F +TA++G SG GK+T++ + S R TG + + I Y + +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDRGVDP 80
Query: 911 -TFARISGYCEQNDIHSPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ R G Q P +++Y++++ Y R+ E + ++ V E+K
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
++S LS Q++RL IA + P +I MDEP S LD
Sbjct: 141 RLKS-----NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 58/252 (23%), Positives = 100/252 (39%), Gaps = 59/252 (23%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGE-FVPERT 227
D++ +K G + L+G SGK+ LA+ G L L + SG + +G + + R
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
A I Q N T+ A E L L + +A +A
Sbjct: 64 IATIMQ--NPRTAFNPLFTMGNHAI--------ETLRSLGKLSKQA------------RA 101
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA--- 344
+ E EA +GL + + + +SGG +R +M+ AL
Sbjct: 102 LILEALEA----------VGLPDPEEVL--KKYPFQLSGGMLQR-----VMIALALLLEP 144
Query: 345 --LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDII 396
L DE +T LD +++ L++ + GT ++ + T+DL D++
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLRELRQLF-GTGILLI------THDLGVVARIADEVA 197
Query: 397 LLSDGQIVYQGP 408
++ DG+IV +G
Sbjct: 198 VMDDGRIVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 60/253 (23%), Positives = 109/253 (43%), Gaps = 55/253 (21%)
Query: 828 SLTFDEV--VYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885
++ FD V Y P E + ++ ++ F G A++G +G+GK+TL+
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLIQ 51
Query: 886 VLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSPFVTVY---ESLLYSA 939
++ + T G +T +ITI+ K ++ + R + V+ ES L+
Sbjct: 52 NINALLKPTTGTVTVDDITITH--KTKDKYIR--------PVRKRIGMVFQFPESQLFED 101
Query: 940 WLRLPPEVDSETRKMFIEEV--------MEL------VELKPLIQSLVGLPGVSGLSTEQ 985
+ + KM ++EV M+L + P +S Q
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPF-----------QMSGGQ 150
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPGIDI 1044
+++ I L NP II +DEPT+GLD ++ VMR +++ D +T++ H ++
Sbjct: 151 MRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EV 209
Query: 1045 FDAFDELFLMKRG 1057
DE+ +MK G
Sbjct: 210 ARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 64/225 (28%), Positives = 91/225 (40%), Gaps = 41/225 (18%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
ILKD+S PG +LG +GK+TLL +AG +D +NG P
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FNGEAR--PAPG 67
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK-PDPDIDVY 284
Y+ Q TVRE + +GV + L NE K +PD D
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDALDRF----NEISAKFAEPDAD-- 116
Query: 285 MKAIATEGQEANVITDYYLKVLG-------LEVCADTM---VGDEMIRGISGGERKRVTT 334
M A+ E E I D LE+ D + D + +SGGER+RV
Sbjct: 117 MDALLAEQAELQEIID----AADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVAL 172
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
+++ L +DE + LD+ + V L+QH+ GT V
Sbjct: 173 CRLLLSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVA 213
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 1e-05
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 27/224 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNI-------TISGYPK 907
++ +S + G + ++G SGAGKTTL +++G T G + + T G P
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG-PD 358
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ R G Q P TV ++L + L LP E+ K I M + +
Sbjct: 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDEL--ARMKAVITLKMVGFDEEK 416
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ L P LS +R R+ +A L+ P I+ +DEPT +D I V +++
Sbjct: 417 AEEILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSI 470
Query: 1028 -----DTGRTVVCTIHQPGID-IFDAFDELFLMKRGGQEIYVGP 1065
+ +T + H +D + D D LM R G+ + +G
Sbjct: 471 LKAREEMEQTFIIVSHD--MDFVLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 37/116 (31%), Positives = 57/116 (49%), Gaps = 28/116 (24%)
Query: 303 LKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSS 357
L++LGL AD + +SGGER+RV ++ ALA L +DE ++ LD +
Sbjct: 82 LELLGLAHLADRPFNE-----LSGGERQRV-----LLARALAQEPPILLLDEPTSHLDIA 131
Query: 358 TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL------FDDIILLSDGQIVYQG 407
+++ L++ T V+ L +DL D +ILL DG+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 41/193 (21%), Positives = 70/193 (36%), Gaps = 43/193 (22%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-- 224
+L +V+ I G + L+GP GK+TLL + G L +G + N + + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY 284
+R + Q ++V + L F+ G+ ARR
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFALPATLKGN--------ARRNA------------- 114
Query: 285 MKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
+ L+ GL + +SGG+R RV ++ A
Sbjct: 115 --------------ANAALERSGL-----DGAFHQDPATLSGGQRARVALLRALLAQPKA 155
Query: 345 LFMDEISTGLDSS 357
L +DE + LD +
Sbjct: 156 LLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 23/101 (22%)
Query: 325 SGGERKRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
SGG R+RV M+ ALA L DE +T LD + QI++ LK + GTA+I
Sbjct: 155 SGGMRQRV-----MIAMALALNPKLLIADEPTTALDVTVQAQILDLLK-ELQREKGTALI 208
Query: 380 SLLQPAPETYDL------FDDIILLSDGQIVYQGPRELVLE 414
+ T+DL D + ++ G+IV +GP E + +
Sbjct: 209 LI------THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 62/268 (23%), Positives = 107/268 (39%), Gaps = 59/268 (22%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
FE + F Y P+R L ++ ++PG L+GP +GK+TL L D
Sbjct: 340 FEQVNFAY----PARPDQPA-LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ- 393
Query: 207 KVSGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
SGR+ +G D+ + P R + D + +V E + +
Sbjct: 394 --SGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYG-------------- 437
Query: 265 ELARRENEAGIKPDP-DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+PD D +V A A E + L DT +G+ +
Sbjct: 438 -----------RPDATDEEVEAAARAAHAHEF---------ISALPEGYDTYLGERGVT- 476
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI---- 379
+SGG+R+R+ ++ A L +DE ++ LD+ + Q+V + + T +I
Sbjct: 477 LSGGQRQRIAIARAILKDAPILLLDEATSALDAESE-QLVQQALETLMKGRTTLIIAHRL 535
Query: 380 SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + A D I+++ G+IV QG
Sbjct: 536 ATVLKA-------DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 63/264 (23%), Positives = 102/264 (38%), Gaps = 76/264 (28%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK +S I G T LLGP +GK+TLLL L G L GRV MG V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG---IYLPQRGRVKV----MGREVNAEN 73
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
++ D+ + TV + +AF G+ E+ RR EA
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMM 338
LK + + D+ +S G++KRV G +
Sbjct: 123 -----------------------LKAVRMWDFR-----DKPPYHLSYGQKKRVAIAGVLA 154
Query: 339 VGPALALFMDEISTGLDSS---TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL---- 391
+ P + + +DE LD T +I++ L H T +++ T+D+
Sbjct: 155 MDPDV-IVLDEPMAYLDPRGQETLMEILDRL----HNQGKTVIVA-------THDVDLAA 202
Query: 392 --FDDIILLSDGQIVYQGPRELVL 413
D +I+L +G+++ +G + L+
Sbjct: 203 EWADQVIVLKEGRVLAEGDKSLLT 226
|
Length = 274 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 18/179 (10%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT--GGYITGN-ITISGYPKKQETFARISGYCEQND 923
G + A+MG SGAGK+TL+++++G G I N + +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVD-SETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
+TV +++ L L P + + ++ + + + V + + L P LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRL---PE--QLS 130
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1040
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL 189
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 56/225 (24%), Positives = 96/225 (42%), Gaps = 27/225 (12%)
Query: 823 PFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTT 882
P EPH +V+ + + V+ ++ +S + R G + + G+ GAG+T
Sbjct: 247 PHEPH--EIGDVILEA---RNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTE 301
Query: 883 LMDVLSGRKTGGYITGNITISGYP-----KKQETFARISGYCEQNDIHS--PFVTVYESL 935
L+ L G G + GN+ I+G P Q A I+ E H P + V +++
Sbjct: 302 LVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNI 360
Query: 936 LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV------GLPGVSGLSTEQRKRL 989
S + S KM I+ EL + IQ L LP + LS +++
Sbjct: 361 TLSV-------LKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLP-IGRLSGGNQQKA 412
Query: 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
+A L+ NP ++ +DEPT G+D A + + + G ++
Sbjct: 413 VLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 51/210 (24%), Positives = 87/210 (41%), Gaps = 16/210 (7%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTT----LMDVLSGRKTGGYITGNITISGYPKKQET 911
L+ L+ + + G + AL+G SG+GK+ ++ +L T +G I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 912 F-ARISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R QN + P T+ + + + I E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARAL---ILEALEAVGLPDP 115
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1027
+ L P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G ++ H G+ + DE+ +M G
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDDG 202
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 14/170 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYIT-GNITISGYPKK 908
L+ +S F +TAL+G SG GK+T + D++ G + G I I
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 909 QETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q +PF +++E++ Y LR+ D +E + L
Sbjct: 82 VVELRRRVGMVFQKP--NPFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWD 137
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
++ + + GLS Q++RL IA L P ++ MDEP S LD A
Sbjct: 138 EVKDRLHESAL-GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 52/232 (22%), Positives = 90/232 (38%), Gaps = 54/232 (23%)
Query: 834 VVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG 893
V Y+ D+P +L +S + G ++G +GAGK+TL +L+ +
Sbjct: 14 VRYAPDLPP-------------VLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFL 58
Query: 894 GYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPP 945
G I I G + P + SL L+S +R
Sbjct: 59 EAEEGKIEIDG----------------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNL 102
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
+ E I + + E G LS QR+ L +A L+ P ++ +D
Sbjct: 103 DPFDEYSDEEIYGALRVSE------------GGLNLSQGQRQLLCLARALLKRPRVLVLD 150
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
E T+ +D A++ +T+R T T++ H+ I D +D++ +M G
Sbjct: 151 EATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TIID-YDKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 2e-05
Identities = 19/109 (17%), Positives = 41/109 (37%)
Query: 1261 IPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAA 1320
+ + V + +I+ + G + L + G L ++ N A
Sbjct: 145 LGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLAYIALGALLGSLFKNSEAAI 204
Query: 1321 IVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFG 1369
+V ++ + F G + P P +P + +W + P + GL+ +G
Sbjct: 205 LVISILILLLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPIDGLLRIIYG 253
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 57/219 (26%), Positives = 89/219 (40%), Gaps = 39/219 (17%)
Query: 868 VLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISG---YPKKQETFA--RISGYC 919
+ ALMG SG GK+TL+ + L + G + + G Y + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 920 EQNDIHSPFVTVYES----LLYSAWLRLPPEVDSETR-----KMFIEEVMELVELKPLIQ 970
Q P +T+Y++ + + ++ E+D +EV + + P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYP--- 147
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S LS QR+RL IA L P I+ MDEPT+ +D A + + +
Sbjct: 148 --------SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKE 198
Query: 1031 RTVVCTIHQPG----IDIFDAFDELFLMKRGGQEIYVGP 1065
T+V H P + + AF L+L G+ I VGP
Sbjct: 199 YTIVLVTHSPAQAARVSDYVAF--LYL----GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 33/162 (20%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFA 913
+L+ +S +PG + L+G +GAGK+TL+ V+ G G I K+
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-----------KRNGKL 67
Query: 914 RISGYCEQN---DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
RI GY Q D P L + +LRL P +K I ++ V+ LI
Sbjct: 68 RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLID 115
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 116 A----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 14/165 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYP--KKQET 911
L ++ + +TA++G SG GK+T + L+ +TG + +G K +
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 912 FARIS---GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+ G Q +PF ++++++ Y R+ + + + +E+ ++ V L
Sbjct: 88 LVELRKNIGMVFQKG--NPFPQSIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWD 143
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
++ + + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 144 EVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-05
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 35/198 (17%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP-KKQ-E 910
+L +GLS G L + G +GAGKT+L+ +L+G R G + G P ++Q +
Sbjct: 15 ILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ----GEPIRRQRD 70
Query: 911 TFARISGYC-EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ + Y Q I +T E+L + RL D E L
Sbjct: 71 EYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDDEA----------------LW 111
Query: 970 QSL--VGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
++L VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 112 EALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171
Query: 1023 VRNTVDTGRTVVCTIHQP 1040
+ + G V+ T HQ
Sbjct: 172 LAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 34/227 (14%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKK 908
+ L +S G A++G +G+GK+T+ +L+G + G I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG----EIKIDGITIS 74
Query: 909 QETFARIS---GYCEQN-DIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+E I G QN D + F+ TV + + + + V + K I+++ +
Sbjct: 75 KENLKEIRKKIGIIFQNPD--NQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKK 129
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1019
V ++ + LS Q++R+ IA L NP II DE TS LD + +
Sbjct: 130 VGMEDYLDK-----EPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAF--DELFLMKRGGQEIYVG 1064
M +R T +T++ H D+ +A D++ + G+ I G
Sbjct: 185 MVDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISG 917
+S R G A++G +G+GK+TL +L+G T G I N + RI
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRM 91
Query: 918 -YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
+ + N +P + + + LRL +++ E R+ I E + +V L P +
Sbjct: 92 IFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--- 146
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
L+ Q++R+ +A L+ P II DE + LD
Sbjct: 147 -PHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 55/258 (21%), Positives = 98/258 (37%), Gaps = 61/258 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEFV 223
++ VS +K G + LLGP +GKTT + G K D SG++ +G D+ +
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-----SGKILLDGQDITKLP 68
Query: 224 PERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ A Y+ Q + ++TV E + +G+ S+ E +L
Sbjct: 69 MHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGL-SKKEREEKL------------- 114
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ L+ + + +SGGER+RV +
Sbjct: 115 --------------------EELLEEFHITHLRKSKAS-----SLSGGERRRVEIARALA 149
Query: 340 -GPALALFMDEISTGLDSSTTF---QIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
P L +DE G+D +I+ LK + G V+ ET + D
Sbjct: 150 TNPKF-LLLDEPFAGVDPIAVQDIQKIIKILK-----DRGIGVLITDHNVRETLSITDRA 203
Query: 396 ILLSDGQIVYQG-PRELV 412
++ +G+++ +G P E+
Sbjct: 204 YIIYEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 3e-05
Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 46/237 (19%)
Query: 181 TLLLGPPASGKTTLLLALAG--KLDSS-LKVSGRVTYNGHDMGEFVPERTA-AYISQHDN 236
T + G SGKTTL+ +AG + D + ++GR ++ PE+ Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEAN 296
++VR L RY G+K E
Sbjct: 86 LFPHLSVRGNL-----------RY-------------GMK------------RARPSERR 109
Query: 297 VITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDS 356
+ + +++LG+ + G +SGGE++RV G ++ L MDE LD
Sbjct: 110 ISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164
Query: 357 STTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413
++I+ L + +H G ++ + E L D +++L DG++ GP V
Sbjct: 165 PRKYEILPYL-ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 3e-05
Identities = 48/187 (25%), Positives = 86/187 (45%), Gaps = 26/187 (13%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
G LT ++G G GK++L+ + G + G + + P + T +R + Y
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR-NRYSVAYAA 85
Query: 925 HSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVG 974
P++ TV E++ + S K + V + L+P I Q+ +G
Sbjct: 86 QKPWLLNATVEENITF----------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIG 135
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGRT 1032
G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D RT
Sbjct: 136 ERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRT 194
Query: 1033 VVCTIHQ 1039
+V H+
Sbjct: 195 LVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 3e-05
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 28/160 (17%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYIT--------GNITISGYPKKQETFA 913
+TAL+G SG GK+T + D++ G + G+I + + KK
Sbjct: 31 VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKK----- 85
Query: 914 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
G Q +PF ++++++ Y LR+ E D + + +EE ++ L ++
Sbjct: 86 --VGMVFQKP--NPFPKSIFDNVAYG--LRIHGEDDEDFIEERVEESLKAAALWDEVKDK 139
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ + GLS Q++RL IA + +P +I MDEP S LD
Sbjct: 140 LDKSAL-GLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178
|
Length = 250 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 64/219 (29%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L L + VL + GVSG+GK+TL+ G Y +G + + K
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPKF------- 57
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSL 972
S + +FI+++ L+++ L Q L
Sbjct: 58 --------------------------------SRNKLIFIDQLQFLIDVGLGYLTLGQKL 85
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G
Sbjct: 86 ------STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLG 139
Query: 1031 RTVVCTIHQPGIDIFDAFDELFLM-----KRGGQEIYVG 1064
TV+ H D+ + D + K GG+ ++ G
Sbjct: 140 NTVILIEHNL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 3e-05
Identities = 43/176 (24%), Positives = 80/176 (45%), Gaps = 18/176 (10%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
+L+GLS P ++G +GAGK+++++ L + G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLT-- 1306
Query: 916 SGYCEQNDIHSPFVTVYES-LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-QSLV 973
D+ + +S +L+S +R + SE + E +E +K +I ++
Sbjct: 1307 -------DLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPF 1359
Query: 974 GL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1360 GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIR 1415
|
Length = 1495 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-05
Identities = 66/222 (29%), Positives = 100/222 (45%), Gaps = 41/222 (18%)
Query: 860 LSGA---FRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG---YITGNITISGYPKKQET 911
LSGA PG + AL+G +GAGK+T+M VL+G + G Y+ +T +G QE
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE- 78
Query: 912 FARISGYCEQNDIHS-----PFVTVYESLLY-----SAWLRLPPEVDSETRKMFIEEVME 961
A I IH P +T+ E++ + + R+ + +KM+ E
Sbjct: 79 -AGIG------IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMYAEADKL 125
Query: 962 LVELKPLIQS--LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L L S LVG LS +++ + IA L +I MDEPT L +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061
R +R GR +V H+ +IF+ D++ + R GQ I
Sbjct: 181 FRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 67/273 (24%), Positives = 115/273 (42%), Gaps = 55/273 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
ILK ++ I G + ++GP SGK+TL +AG + + G + + G + + PE
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-LEGDILFKGESILDLEPEE 80
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELA---RRENEAGIKPDPDIDV 283
A H+G LAF + G LA +R+ + + DP ++
Sbjct: 81 RA--------HLGIF-----LAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDP-LEF 126
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM-MVGPA 342
+I + LK++G++ + + + G SGGE+KR +M ++
Sbjct: 127 L-----------EIINE-KLKLVGMD---PSFLSRNVNEGFSGGEKKRNEILQMALLDSE 171
Query: 343 LALFMDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVI------SLLQPAPETYDLFD 393
LA+ +DE +GLD I +N L S ++I LL Y D
Sbjct: 172 LAI-LDETDSGLDIDALKIIAEGINKLM-----TSENSIILITHYQRLLD-----YIKPD 220
Query: 394 DIILLSDGQIVYQGPRELVLEFFESMGFKCPKR 426
+ ++ +G+I+ G EL E E G+ K+
Sbjct: 221 YVHVMQNGKIIKTGDAELAKE-LEKKGYDWLKQ 252
|
Length = 252 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 946 EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
EV ++K+ I + + + K ++LVG S LS Q++R++IA ++ NP I+ +D
Sbjct: 548 EVVDVSKKVLIHDFVSALPDK--YETLVG-SNASKLSGGQKQRISIARAIIRNPKILILD 604
Query: 1006 EPTSGLDARAAAIVMRTVRN 1025
E TS LD ++ +V +T+ N
Sbjct: 605 EATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 48/180 (26%), Positives = 80/180 (44%), Gaps = 18/180 (10%)
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---------PKKQETFARISGYCEQN 922
L+G SGAGK++L+ VL+ + +G + I+G K R G Q
Sbjct: 33 LLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQ 90
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
P +TV ++L+ + P V ++ + +L+E L P LS
Sbjct: 91 YNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLKPYADRFP--LHLS 143
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
Q++R+ IA L+ P ++ DEPT+ LD A ++ +R +TG T V H+ +
Sbjct: 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEV 203
|
Length = 242 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 60/251 (23%), Positives = 100/251 (39%), Gaps = 43/251 (17%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T+L +S G++T L+G SGK+TLL L S G + + + + +
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSK 81
Query: 226 ---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R AY+ Q MTVRE +A +G RY L R
Sbjct: 82 AFARKVAYLPQQLPAAEGMTVRELVA-------IG-RYPWHGALGRF------------- 120
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
G + + ++GL+ A +V +SGGER+R ++ +
Sbjct: 121 ---------GAADREKVEEAISLVGLKPLAHRLVDS-----LSGGERQRAWIAMLVAQDS 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE ++ LD + ++ L + G VI++L D ++ L G+
Sbjct: 167 RCLLLDEPTSALDIAHQVDVL-ALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGE 225
Query: 403 IVYQG-PRELV 412
++ QG P EL+
Sbjct: 226 MIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 4e-05
Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 31/160 (19%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-----YPKKQETFARISGYCEQ 921
G TA++G +G GK+TL+ LS T G++ + G Y K+ AR G Q
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKE--VARRIGLLAQ 88
Query: 922 NDIHSPFVTVYESL---------LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
N +TV E + L++ W + + ++ T+ M + L + QS
Sbjct: 89 NATTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLAD-----QS- 140
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 141 -----VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 4e-05
Identities = 61/244 (25%), Positives = 110/244 (45%), Gaps = 47/244 (19%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
+ DVS K G+ ++GP +GKTTL+ L D + G++ +G D+
Sbjct: 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDI-------- 399
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-EAGIKPDPDIDVYMK 286
N + ++R+++A + G+ +R + REN G + D +VY
Sbjct: 400 --------NTVTRESLRKSIATVFQDAGLFNR-------SIRENIRLGREGATDEEVY-- 442
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
E +A D+ LK DT+VG+ R +SGGER+R+ ++ A L
Sbjct: 443 ----EAAKAAAAHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAILKNAPILV 494
Query: 347 MDEISTGLDSSTTFQI---VNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
+DE ++ LD T ++ ++ L++ N T +I+ DL ++ L G++
Sbjct: 495 LDEATSALDVETEARVKNAIDALRK----NRTTFIIAHRLSTVRNADL---VLFLDQGRL 547
Query: 404 VYQG 407
+ +G
Sbjct: 548 IEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 52/208 (25%), Positives = 81/208 (38%), Gaps = 34/208 (16%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVL-------SGR---KTGGYITGNITI 902
+L +L +S G AL G SGAGK+TL+ L SGR + G
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 903 SG----YPKKQETFARISGYCEQNDIHSPFVT----VYESLLYSAWLRLPPEVDSETRKM 954
S +++ GY Q P V+ V E LL P E
Sbjct: 80 SPREVLEVRRKTI-----GYVSQFLRVIPRVSALEVVAEPLLERGV---PREAARA---- 127
Query: 955 FIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
EL+ + + L LP + S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 128 ---RARELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAA 183
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
+V+ + G ++ H +
Sbjct: 184 NRQVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 62/269 (23%), Positives = 110/269 (40%), Gaps = 80/269 (29%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK ++ IK G +T +LG +GK+TL L G L S SGR+ ++G
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDG----------- 67
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
+ + +S + L +L RE+ + DPD ++
Sbjct: 68 -----------------KPIDYSRKG---------LMKL--RESVGMVFQDPDNQLF--- 96
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTM---VGDEMIR-GI-----------SGGERKRV 332
A+V D + L++ D + V + + R GI S G++KRV
Sbjct: 97 ------SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRV 150
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL- 391
++V L +DE + GLD +I+ L + T +I+ T+D+
Sbjct: 151 AIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA-------THDID 203
Query: 392 -----FDDIILLSDGQIVYQG-PRELVLE 414
D++ ++ +G+++ QG P+E+ E
Sbjct: 204 IVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
|
Length = 283 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDM-----G 220
LK+++ I ++T L+GP GK+TLL +L L +++ G+V ++G D+
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKID 76
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
R + Q N M++ + +A+ R G+ + EL
Sbjct: 77 VVELRRRVGMVFQKPNPF-PMSIYDNIAYGPRLHGIKDKKEL 117
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-05
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
R +SGGE++RV + DE + LD T + N L++ V + + V++
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT- 225
Query: 382 LQPAPETY-DLFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVTSR 439
PE DL D I L +G+I +G P E+V F E G +++ + + +
Sbjct: 226 -SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME--GVSEVEKECEVEVGEPIIKV 282
Query: 440 KDQKQYW 446
++ + +
Sbjct: 283 RNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 32/162 (19%), Positives = 49/162 (30%), Gaps = 50/162 (30%)
Query: 192 TTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA----AYISQHDNHIGEMTVRETL 247
+TLL + G L SG + +G D + + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQ---PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307
F R + A E L+ +G
Sbjct: 58 FFGLR-----------DKEADARAEE----------------------------ALERVG 78
Query: 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
L D + SGG+++RV ++ L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 6e-05
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 50/233 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK V+ I+ G L+G GK+TLL ++G + SG V G + E P+R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG---LAQPTSGGVILEGKQITEPGPDRM 57
Query: 228 AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKA 287
+ Q+ + + +TVRE +A + +L +L++ E A
Sbjct: 58 VVF--QNYSLLPWLTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 288 IATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFM 347
I + ++ ++GL AD G +SGG ++RV + L +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 348 DEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
DE LD+ T + L Q + T ++ T+D+ D+ +LLSD
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDV-DEALLLSD 183
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 41/155 (26%), Positives = 74/155 (47%), Gaps = 26/155 (16%)
Query: 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHS 926
T ++G+SG+GK+TL +L G +G I ++G+ K T + Y Q
Sbjct: 503 TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFINYLPQE---- 556
Query: 927 PFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VGL-----PG 977
P++ ++ E+LL A V + I E+ E+K I+++ +G
Sbjct: 557 PYIFSGSILENLLLGA----KENVSQDE----IWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 609 GSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 6e-05
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 13/163 (7%)
Query: 869 LTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPKKQETFA----RISGYCEQND 923
+TAL+G SG GK+T + + I G + I G K + + +Q +
Sbjct: 30 ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN 89
Query: 924 IHSPFV-TVYESLLYSAWLR-LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981
+ FV ++YE++ Y+ L + D E + + + ++ V L ++ + ++ L
Sbjct: 90 V---FVKSIYENISYAPKLHGMIKNKDEE--EALVVDCLQKVGLFEEVKDKLKQNALA-L 143
Query: 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
S Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 144 SGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 7e-05
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDM 219
L VS P +T L+GP SGK+TLL ++ L+ + ++G + YNGH++
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNI 74
|
Length = 252 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 60/247 (24%), Positives = 96/247 (38%), Gaps = 51/247 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
IL +S I G+ ++G +GK+T+L L D + SG +T +G D+ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN---SGSITIDGQDI--RDVTQ 332
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ + IG + L + T +
Sbjct: 333 QSLRRA-----IGIVPQDTVLFNDTIAYNIKYGRPDATAEE-----------------VG 370
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG--ISGGERKRVTTGEMMVGPALA 344
A A Q + I L DT VG+ RG +SGGE++RV ++
Sbjct: 371 AAAEAAQIHDFIQS-------LPEGYDTGVGE---RGLKLSGGEKQRVAIARTILKNPPI 420
Query: 345 LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----SLLQPAPETYDLFDDIILLSD 400
L +DE ++ LD+ T I L++ V T VI S + A D+II+L +
Sbjct: 421 LILDEATSALDTHTEQAIQAALRE-VSAGRTTLVIAHRLSTIIDA-------DEIIVLDN 472
Query: 401 GQIVYQG 407
G+IV +G
Sbjct: 473 GRIVERG 479
|
Length = 497 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 7e-05
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 16/172 (9%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGG--YITGNITISGYP 906
+L+ L+ + +TA +G SG GK+T + D++ G G Y G T S
Sbjct: 97 VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156
Query: 907 KKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
E RI ++ +PF +++++++ Y R D + + +E+ ++ L
Sbjct: 157 SSLELRTRIGMVFQKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAAL 211
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
++ + G + LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 212 WDEVKDDLDKAG-NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 7e-05
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 30/213 (14%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ 909
K+ L+ +S G + L+G +GAGKTTL+ L G R T G I I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-L 968
++ E + S +TV E+L + R F E + + EL P L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF--------AERDQFQERIKWVYELFPRL 127
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 128 HERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIE 181
Query: 1029 TGRTVVCTIHQPGIDIF----DAFDELFLMKRG 1057
R + G+ IF +A L L RG
Sbjct: 182 QLR-------EQGMTIFLVEQNANQALKLADRG 207
|
Length = 237 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 7e-05
Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 16/192 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L G++ RPG + L G SGAGK+TL+ ++ G R + G I I+ ++ F
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFL 77
Query: 914 RIS-GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R G Q+ H + TVY+++ +P + + V ++ L+
Sbjct: 78 RRQIGMIFQD--HHLLMDRTVYDNV------AIPLIIAGASGDDIRRRVSAALDKVGLLD 129
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1031 RTVVCTIHQPGI 1042
TV+ H G+
Sbjct: 188 VTVLMATHDIGL 199
|
Length = 222 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 8e-05
Identities = 43/175 (24%), Positives = 70/175 (40%), Gaps = 17/175 (9%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIH 925
G + G +GAGKTTL+ VL+G +G I I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 926 SPFVTVYESLLYSAWL--RLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
++ E+L + L R ++ + +V L +L V LS
Sbjct: 94 KADLSTLENLHFLCGLHGRRAKQMPGSA--------LAIVGLAGYEDTL-----VRQLSA 140
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
Q+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 141 GQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+LK++S +K G LLG SGK+TLL L G L G +T +G
Sbjct: 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ---QGEITLDGVP 65
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 7/97 (7%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE--RTAAYIS 232
+ G + + GP +GKT+LL LAG +G V + G + E + Y+
Sbjct: 24 LNAGELVQIEGPNGAGKTSLLRILAGLARP---DAGEVLWQGEPIRRQRDEYHQDLLYLG 80
Query: 233 QHDNHI-GEMTVRETLAFSARCQGVGSRYELLTELAR 268
H I E+T E L F R G G L LA+
Sbjct: 81 -HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQ 116
|
Length = 204 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 8e-05
Identities = 48/180 (26%), Positives = 75/180 (41%), Gaps = 22/180 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQE--- 910
L G+S +TAL+G SG GK+T + L+ R I G++ + G Q+
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 911 --TFARISGYCEQNDIHSPF-VTVYESLLYSA----------WLRLPPEVDSETRKMFIE 957
+ G Q+ +PF ++ E++ Y RL D + +E
Sbjct: 121 LVELRKRVGMVFQSP--NPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVE 178
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ L + + GLS Q++RL IA L +P +I MDEP S LD A +
Sbjct: 179 RSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 1e-04
Identities = 44/183 (24%), Positives = 76/183 (41%), Gaps = 44/183 (24%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE--RTAAYIS 232
++PG LLG +GKTT L G D+++ SG T G + + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTG--DTTV-TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEG 292
Q D +T RE L AR +GV +
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGVPA---------------------------------- 2044
Query: 293 QEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEIST 352
+E + ++ ++ LGL + AD + G SGG +++++T ++G + +DE +T
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 353 GLD 355
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 1e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE- 225
+L++VS I+PG ++GP SGK+TL + G L SGRV +G D+ ++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 226 --RTAAYISQHDN 236
Y+ Q D
Sbjct: 74 LGDHVGYLPQDDE 86
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 1e-04
Identities = 64/276 (23%), Positives = 107/276 (38%), Gaps = 48/276 (17%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFVP 224
L D+ +K G T L+G SGK+TLL L G L + V V + E P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 225 ERTAAYISQH--DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
R + ++ + E TV + +AF + G+
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPK------------------------ 117
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
++A I L+++GL ++ +SGG+ +RV ++
Sbjct: 118 ----------EKAEKIAAEKLEMVGLA----DEFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
L +DE + GLD +++ L + +H SG V+ + + D D + LL G
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQ-LFESIH-QSGQTVVLVTHLMDDVADYADYVYLLEKGH 221
Query: 403 IVYQG-PRELVLE--FFESMGFKCPKRKGVADFLQE 435
I+ G P ++ E F ++ PK AD LQ+
Sbjct: 222 IISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 65/252 (25%), Positives = 101/252 (40%), Gaps = 62/252 (24%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LK +S IK G LLG GK+TLL L D G + NG + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADY---- 407
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL-TELARRENEAGIKPDPDIDVYM 285
E +R+ ++ V R L L R+N P+
Sbjct: 408 ------------SEAALRQAISV------VSQRVHLFSATL--RDNLLLAAPN------- 440
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVG-----DEMIRGISGGERKRVTTGEMMVG 340
A++ V L+ +GLE + G E R +SGGE++R+ ++
Sbjct: 441 ---ASDEALIEV-----LQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-----FDDI 395
A L +DE + GLD+ T QI+ L +H V+ + T+ L FD I
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHA---QNKTVLMI------THRLTGLEQFDRI 543
Query: 396 ILLSDGQIVYQG 407
++ +GQI+ QG
Sbjct: 544 CVMDNGQIIEQG 555
|
Length = 574 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 149 EDIFN----YLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-- 202
ED+FN YL I ILKD++ I + ++GP SGK+TLL L +
Sbjct: 8 EDVFNISRLYLYI-----NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI 62
Query: 203 -DSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGS 258
DS +KV G+V Y G D+ + + + Q N +++ + +A+ + G+
Sbjct: 63 YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKE 122
Query: 259 RYEL 262
+ E+
Sbjct: 123 KREI 126
|
Length = 257 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-04
Identities = 53/215 (24%), Positives = 90/215 (41%), Gaps = 50/215 (23%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G TA +G +G+GK+T+M +L+G G + I+ K + D
Sbjct: 33 GSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNK-------------D 79
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP------------LIQS 971
I V L++ PE ++F E V++ V P L +
Sbjct: 80 IKQIRKKV--GLVFQF-----PE-----SQLFEETVLKDVAFGPQNFGVSQEEAEALARE 127
Query: 972 LVGLPGVSG---------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
+ L G+S LS Q +R+ IA L P I+ +DEPT+GLD + +M
Sbjct: 128 KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTL 187
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +G T+V H D+ + D ++++++G
Sbjct: 188 FKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 16/151 (10%)
Query: 874 GVSGAGKTTLMDVLSGRK---TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930
G SG GK+TL+ +++G + +G G ++ P + R G Q+ P ++
Sbjct: 36 GPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAE----RGVGMVFQSYALYPHLS 91
Query: 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLT 990
V E++ S L+L E + +V E+++L L+ P LS QR+R+
Sbjct: 92 VAENM--SFGLKLA-GAKKEEINQRVNQVAEVLQLAHLLDRK---P--KALSGGQRQRVA 143
Query: 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
I LVA PS+ +DEP S LDA A + MR
Sbjct: 144 IGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-04
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
S LS Q++R++IA L+ +I DEPT LD+ + VM + D G TV+ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1039 QPGI 1042
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 1e-04
Identities = 48/169 (28%), Positives = 82/169 (48%), Gaps = 25/169 (14%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETF 912
+++ L+ + G + L+G SG GKTT++ +++G + G I I G + T
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG---EDVTH 72
Query: 913 ARISGYCEQNDI----HS----PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
I +Q DI S P +++ E++ Y L++ V E RK ++E +ELV+
Sbjct: 73 RSI----QQRDICMVFQSYALFPHMSLGENVGYG--LKML-GVPKEERKQRVKEALELVD 125
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
L V +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 126 LAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-04
Identities = 38/151 (25%), Positives = 52/151 (34%), Gaps = 59/151 (39%)
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
L+G SG GK+TL ++ G T G I G DI
Sbjct: 43 GLVGESGCGKSTLGRLILGLEEPTSG----EILFEG-----------------KDIT--- 78
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI------QSLVGLPGVSGLS 982
++ E R+ + E++E V L + LS
Sbjct: 79 -----------------KLSKEERRERVLELLEKVGLPEEFLYRYPHE----------LS 111
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013
QR+R+ IA L NP +I DEP S LD
Sbjct: 112 GGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 42/162 (25%), Positives = 73/162 (45%), Gaps = 20/162 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR 914
+L G+ G + AL+G +GAGK+TLM +++G +G + I G P + T A+
Sbjct: 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAK 82
Query: 915 ISGY----CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL-VELKPLI 969
Q + P ++V E++L+ LP S +KM + + L +L
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASM-QKM-KQLLAALGCQLDLDS 136
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ L R+ + I L+ + I+ +DEPT+ L
Sbjct: 137 SA-------GSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 65/280 (23%), Positives = 104/280 (37%), Gaps = 70/280 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
+ +++ I G +L+GP SGKTT + + ++ + SG + +G D+ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 226 -RTAAYISQHDNHIG---EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
R Y+ Q IG MTV E +A + + A
Sbjct: 74 RRKIGYVIQ---QIGLFPHMTVEENIALVPKLLKWPK--------EKIRERA-------- 114
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
D L ++GL+ D +SGG+++RV V
Sbjct: 115 ------------------DELLALVGLD---PAEFADRYPHELSGGQQQRVG-----VAR 148
Query: 342 ALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396
ALA L MDE LD T Q+ K + G ++ + E + L D I
Sbjct: 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFK-RLQQELGKTIVFVTHDIDEAFRLADRIA 207
Query: 397 LLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQE 435
++ +G+IV G P E+ + P VA+F+
Sbjct: 208 IMKNGEIVQVGTPDEI---------LRSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-04
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 27/217 (12%)
Query: 832 DEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-R 890
EVV V+ L + + +S R G + + GV+G G++ L++ +SG R
Sbjct: 254 GEVVLEVE-----DLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR 308
Query: 891 KTGGYITGNITISGYPKKQETFARIS-----GYCEQNDIH---SPFVTVYESLLYSAWLR 942
K +G I ++G R Y ++ +++ E+L+
Sbjct: 309 KP---ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG-RHD 364
Query: 943 LPPE-----VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA 997
P +D + F E++E +++ S LS +++L +A EL
Sbjct: 365 KKPFSRGGFLDRRAIRKFARELIEEFDVRA--PSP--DAPARSLSGGNQQKLILARELAR 420
Query: 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
P ++ +PT GLD A + + D G+ V+
Sbjct: 421 RPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 46/192 (23%), Positives = 72/192 (37%), Gaps = 56/192 (29%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+LKD+S I G ++GP +GK+TLL LAG+L +SG V GE V
Sbjct: 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKV-----GETV- 385
Query: 225 ERTAAYISQHDNHI-GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
Y QH + + + TV E
Sbjct: 386 --KIGYFDQHRDELDPDKTVLE-------------------------------------- 405
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ +G E V YL G + ++ + +SGGE+ R+ ++++ P
Sbjct: 406 ELSEGFPDGDEQEVRA--YLGRFGF--TGEDQ--EKPVGVLSGGEKARLLLAKLLLQPPN 459
Query: 344 ALFMDEISTGLD 355
L +DE + LD
Sbjct: 460 LLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 61/261 (23%), Positives = 92/261 (35%), Gaps = 66/261 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG SG + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
A AY+SQ M V L Q +R ELL ++A
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLH---QPDKTRTELLNDVAGALA----------- 114
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE--MMVG 340
+ D LG +SGGE +RV + +
Sbjct: 115 ---------------LDDK----LG-----------RSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 341 PAL-----ALFMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
P L +DE LD S ++++ L Q G A++ T
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-----QGLAIVMSSHDLNHTLRHA 199
Query: 393 DDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 200 HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 53/266 (19%), Positives = 97/266 (36%), Gaps = 59/266 (22%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----- 222
+ D I G + +++G SGK+T + L ++ + +G++ +G ++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVEL 65
Query: 223 --VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
V + + Q MT+ + + G E R+E
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKE---------- 108
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
KA+ LK++GLE DE+ SGG ++RV +
Sbjct: 109 -----KALEL------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARALAA 146
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD + + LK+ + ++ + E + D I+++
Sbjct: 147 EPDILLMDEAFSALDPLIRDSMQDELKK-LQATLQKTIVFITHDLDEAIRIGDRIVIMKA 205
Query: 401 GQIVYQG-PREL--------VLEFFE 417
G+IV G P E+ V EF
Sbjct: 206 GEIVQVGTPDEILRNPANEYVEEFIG 231
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 2e-04
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 38/240 (15%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG----RKTGGYITGNITIS--- 903
+ K VL N +S G + ++G SGAGK+ LM VL G T G I ++ +
Sbjct: 11 DGKEVLKN-ISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKC 69
Query: 904 GYPKKQETFARISGYC------EQNDIHSPFVTVYESL-------------LYSA----- 939
GY ++ C E+ D + + + LY
Sbjct: 70 GYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLD 129
Query: 940 -WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 998
L E+ E ++ + ++L+E+ L + + LS +++R+ +A +L
Sbjct: 130 NVLEALEEIGYEGKEA-VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKE 186
Query: 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
P + DEPT LD + A +V + V +G ++V T H P + I D D+ ++ G
Sbjct: 187 PFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 62/251 (24%), Positives = 95/251 (37%), Gaps = 65/251 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER- 226
L +VS I G + L+G +GKTTLL L G ++ SGR+ ++G D+ ++ +
Sbjct: 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKI 77
Query: 227 ---TAAYISQHDNHIGEMTVRETLA----FSARCQ---GVGSRYELLTELA-RRENEAGI 275
A + + MTV E LA F+ R Q + YEL L RR AG
Sbjct: 78 MREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAG- 136
Query: 276 KPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTG 335
TM SGGE++ + G
Sbjct: 137 --------------------------------------TM---------SGGEQQMLAIG 149
Query: 336 EMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
++ L +DE S GL QI + ++Q G + + Q A + L D
Sbjct: 150 RALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKLADRG 207
Query: 396 ILLSDGQIVYQ 406
+L +G +V +
Sbjct: 208 YVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 22/176 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YP 906
L +S +TA +G SG GK+TL+ D++ + I G I + G Y
Sbjct: 41 LFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNIYD 96
Query: 907 KKQE--TFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
KK + R G Q +PF ++YE+++Y LRL + +E +
Sbjct: 97 KKVDVAELRRRVGMVFQRP--NPFPKSIYENVVYG--LRLQGINNRRVLDEAVERSLRGA 152
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
L ++ + GLS Q++RL IA + P ++ +DEPTS LD + +
Sbjct: 153 ALWDEVKDRLHENAF-GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 34/193 (17%), Positives = 60/193 (31%), Gaps = 55/193 (28%)
Query: 864 FRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQND 923
F G LT + G +G+GK+T++D + G G A +
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAI------GLALG----------GAQSATRRRSGVKAG 61
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983
V+ LI + + L G G
Sbjct: 62 CIVAAVSAE-----------------------------------LIFTRLQLSG--GEKE 84
Query: 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGID 1043
L +A+ + + +DE GLD R + + + G V+ H P +
Sbjct: 85 LSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP--E 142
Query: 1044 IFDAFDELFLMKR 1056
+ + D+L +K+
Sbjct: 143 LAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 2e-04
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 29/249 (11%)
Query: 799 NSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLN 858
+ SS LI T G +P + + + V+ + D+ V L+
Sbjct: 9 DESSDGLITTTTATDTTDPSG-----DPAASSGETVIEARDL-------NVFYGDEQALD 56
Query: 859 GLSGAFRPGVLTALMGVSGAGKTTLM---DVLSGRKTGGYITGNITISG---YPKKQETF 912
+S +TA++G SG GK+T + + ++ + G +T G Y +
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 913 A--RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
A R G Q +PF ++Y+++ Y ++ D + R +EE + L +
Sbjct: 117 ALRRRIGMVFQKP--NPFPKSIYDNVAYGLKIQGYDG-DIDER---VEESLRRAALWDEV 170
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ + G+ LS Q++RL IA + +P +I MDEP S LD A + + + +
Sbjct: 171 KDQLDSSGLD-LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE 229
Query: 1030 GRTVVCTIH 1038
TVV H
Sbjct: 230 -YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 133 ASKALPSFTKFYTTVFEDIFN-YLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGK 191
SK + + ++ + + G + LKD+S I G ++G +GK
Sbjct: 9 VSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFW--ALKDISFEIYKGERVGIIGHNGAGK 66
Query: 192 TTLLLALAG--KLDS-SLKVSGRVTYNGHDMGE-FVPERTAAY 230
+TLL +AG K S +KV+G+V ++G F PE T
Sbjct: 67 STLLKLIAGIYKPTSGKVKVTGKVAP-LIELGAGFDPELTGRE 108
|
Length = 249 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 48/184 (26%), Positives = 79/184 (42%), Gaps = 37/184 (20%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----E 910
+L +S F G + ++G SGAGK+TL+ +++ + G+I I G K +
Sbjct: 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLIN--RLIDPTEGSILIDGVDIKTIDVID 74
Query: 911 TFARISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+I +Q P + TV +++ Y L+ VD E
Sbjct: 75 LRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVDVE----------------- 112
Query: 968 LIQSLVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
S+VGL V LS + +R++IA L NP ++ +DEPTS LD + I+
Sbjct: 113 YYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEE 172
Query: 1022 TVRN 1025
+
Sbjct: 173 LIVK 176
|
Length = 241 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 53/255 (20%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---V 223
ILKD+S + G + ++GP +GK+TL+ + +D + G + +G D+
Sbjct: 18 ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVID 74
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
R + Q H+ E TV++ + + +G
Sbjct: 75 LRRKIGMVFQQP-HLFEGTVKDNIEYGPMLKG---------------------------- 105
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
E NV +YYL ++GL + ++ +SGGE +RV+ +
Sbjct: 106 ----------EKNVDVEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPE 151
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE ++ LD ++T +I+ L + VI + + + D L+ G +
Sbjct: 152 VLLLDEPTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGIL 210
Query: 404 VYQGPRELVLEFFES 418
V +FF +
Sbjct: 211 VEYAK---TYDFFTN 222
|
Length = 241 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 51/170 (30%), Positives = 75/170 (44%), Gaps = 36/170 (21%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYI-----TGNITISGYPKKQETFARIS 916
+TAL+G SG GK+T + D+ G G I NI +S E RIS
Sbjct: 44 VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNI-LSPEVDPIEVRMRIS 102
Query: 917 GYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV--------ELKP 967
++ + PF +++E++ Y +R R+ +EE +E E+K
Sbjct: 103 MVFQKPN---PFPKSIFENVAYGLRIR------GVKRRSILEERVENALRNAALWDEVKD 153
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ L LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 154 RLGDLA-----FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-04
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 971 SLVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LVGL LS Q++R+ +A L P + DEPT+GLD + ++
Sbjct: 150 ELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFD 209
Query: 1025 NTVDTGRTVVCTIH 1038
N G+T++ H
Sbjct: 210 NLNKQGKTIILVTH 223
|
Length = 305 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 28/253 (11%), Positives = 69/253 (27%), Gaps = 25/253 (9%)
Query: 1170 NPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQP 1229
+ +L G G S + + + +I + + +
Sbjct: 48 ASALIIAPILYLIIFGLLFGLREGLSGRLYHWSNPSLDYLAFIVPGVILMSVLFSGIFSF 107
Query: 1230 VVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAM---MGYDWTAE 1286
++ R + + S + +PY+ V S++ +++ + +G +
Sbjct: 108 SSALFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLGVPFLGS 167
Query: 1287 KFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVW 1346
+ + L +L+ A+ V L G P +P W
Sbjct: 168 LLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLILPLGFLSGVFFPLELLPAW 227
Query: 1347 WRWYYWANPVAWTLYGLIASQFGDVEDQMENGETVKHFLRDYFGFKHDFLGLVAGVLTCF 1406
+ + NP+ + + LR + G+ +L
Sbjct: 228 LQGISYINPLTYAI----------------------DALRYVYLGGWRNDGIWISLLILL 265
Query: 1407 VALFGFVFALGIK 1419
+ F+ +
Sbjct: 266 LFAVVFLLLGLLL 278
|
Length = 286 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 3e-04
Identities = 63/245 (25%), Positives = 105/245 (42%), Gaps = 44/245 (17%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITISGYPKKQETFARISGYCEQND 923
G + AL+G SG GK+TL+ +L+G + G + + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 924 IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL------KPLIQSLVGLPG 977
P +TV +++ + P+ + +R + E++ LV + KP
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEIASR---VNEMLGLVHMQEFAKRKP---------- 147
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCT 1036
LS QR+R+ +A L P ++ +DEP LD + + V + ++ G T V
Sbjct: 148 -HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMV 206
Query: 1037 IHQPGIDIFDAFD---ELFLMKRGG-------QEIYVGPLGRHSCQLISYFEAIPGV--E 1084
H D +A + +M RG +EIY P R+S + I GV E
Sbjct: 207 TH----DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKE 262
Query: 1085 KIKDG 1089
+ +DG
Sbjct: 263 RQEDG 267
|
Length = 377 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 60/258 (23%), Positives = 105/258 (40%), Gaps = 52/258 (20%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
+ + + + LK +S I+ G + +GP +GKTT L L+G L + SG V
Sbjct: 25 SLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVA 81
Query: 216 GHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
G VP +R ++ + IG + G + +L +L ++
Sbjct: 82 G-----LVPWKRRKKFLRR----IGVV--------------FGQKTQLWWDLPVIDSFYL 118
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ +Y A + + +++ +L LE DT V R +S G+R R
Sbjct: 119 LA-----AIYDLPPARFKKRLDELSE----LLDLEELLDTPV-----RQLSLGQRMR--- 161
Query: 335 GEMMVGPAL-----ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389
+ AL LF+DE + GLD I N LK++ GT V+ +
Sbjct: 162 --AEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIE 218
Query: 390 DLFDDIILLSDGQIVYQG 407
L ++++ G+++Y G
Sbjct: 219 ALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 53/267 (19%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM-----GE 221
+LK ++ +T L+G GK+TL + L+G L G V + G + G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGL 72
Query: 222 FVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ A + Q + I + +AFS R GV E+ RR +EA
Sbjct: 73 LALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPE-----AEITRRVDEA------- 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
L + + I+ +S G++KRV +V
Sbjct: 121 ---------------------------LTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVL 153
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
A L +DE + GLD + Q++ +++ V G VI Y++ D + +L
Sbjct: 154 QARYLLLDEPTAGLDPAGRTQMIAIIRRIV--AQGNHVIISSHDIDLIYEISDAVYVLRQ 211
Query: 401 GQIVYQG-PRELVL--EFFESMGFKCP 424
GQI+ G P E+ E E G P
Sbjct: 212 GQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 50/216 (23%), Positives = 92/216 (42%), Gaps = 24/216 (11%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--KQ 909
D +L G+S +TA++G SG GK+T + L+ + + + G + Q
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 910 ETFAR---ISGYCEQNDIHSPF-----VTVYESLLYSAWL---RLPPEVDSETRKMFIEE 958
+ R ++ Q + P ++VY+++ Y + R E+D +E
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD-----IVES 129
Query: 959 VMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
++ +L I+ + + LS Q++RL IA L P ++ MDEP GLD A+
Sbjct: 130 ALKDADLWDEIKHKIHKSALD-LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMK 188
Query: 1019 VMRTVRN-TVDTGRTVVCTIHQ-PGIDIFDAFDELF 1052
V +++ + + T+V H + F F
Sbjct: 189 VESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFF 224
|
Length = 261 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 4e-04
Identities = 54/220 (24%), Positives = 98/220 (44%), Gaps = 40/220 (18%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFAR 914
LNG++ + G L A++G G GK++L+ L K G++ +++ P++ A
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQ----AW 709
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-- 972
I QND ++ E++L+ L + ++V+E L P ++ L
Sbjct: 710 I-----QND------SLRENILFGKALNEK----------YYQQVLEACALLPDLEILPS 748
Query: 973 -----VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT- 1026
+G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 749 GDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPE 807
Query: 1027 -VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
V +T + H GI D + +M GG+ +G
Sbjct: 808 GVLKNKTRILVTH--GISYLPQVDVIIVMS-GGKISEMGS 844
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 25/200 (12%)
Query: 869 LTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKKQET--FARISGYCE 920
+TAL+G SG GK+T + L+ I G ++I G Y + + G
Sbjct: 40 VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVF 99
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMF---IEEVMELVELKPLIQSLVGLP 976
Q +PF +++Y+++ Y P + +K +E + L + P
Sbjct: 100 QKP--NPFPMSIYDNVAYG------PRIHGANKKDLDGVVENALRSAALWDETSDRLKSP 151
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
+S LS Q++RL IA L P II DEPTS LD + A + + N + T+V
Sbjct: 152 ALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN-LKKDYTIVIV 209
Query: 1037 IH--QPGIDIFDAFDELFLM 1054
H Q I D + FLM
Sbjct: 210 THNMQQAARISD-YTGFFLM 228
|
Length = 258 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 49/177 (27%), Positives = 77/177 (43%), Gaps = 29/177 (16%)
Query: 871 ALMGVSGAGKTTLMDVLSGRKTGGYI----TGNITISGYPKKQETFARISGYCEQNDIHS 926
L+G +GAGK+TL+ +L+G I +G +T+ G R+S +
Sbjct: 52 GLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG---------RVSSLLGLGGGFN 96
Query: 927 PFVTVYESL-LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985
P +T E++ L L L + E I+E++E EL I LP V S+
Sbjct: 97 PELTGRENIYLNGRLLGLSRKEIDE----KIDEIIEFSELGDFID----LP-VKTYSSGM 147
Query: 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGI 1042
+ RL A+ P I+ +DE + DA R +R + G+TV+ H P
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS 204
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-04
Identities = 53/250 (21%), Positives = 97/250 (38%), Gaps = 48/250 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L +S I G ++G +GK+TLL A+AG L + SG++ +G D+ +
Sbjct: 20 RALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT---SGQILIDGVDVTKKSVA 76
Query: 226 RTAAYISQ-----HDNHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDP 279
+ A +++ E+T+ E LA + R + G L
Sbjct: 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRR------------ 124
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
+ + +A G LGLE +G +SGG+R+ ++ +
Sbjct: 125 --SSFRERLARLG-------------LGLENRLSDRIGL-----LSGGQRQALSLLMATL 164
Query: 340 GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI---SLLQPAPETYDLFDDII 396
P L +DE + LD T ++ + V + T ++ ++ D + +I
Sbjct: 165 HPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMED----ALDYGNRLI 220
Query: 397 LLSDGQIVYQ 406
+L G+IV
Sbjct: 221 MLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 5e-04
Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 50/200 (25%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L L +++ I G++T+++G GK++LLLA+ G++ + G+V ++ + E
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSF 70
Query: 225 ERT-------AAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
E T AY +Q + TV E + F + RY+ +T+ +
Sbjct: 71 EATRSRNRYSVAYAAQ-KPWLLNATVEENITFGSPFN--KQRYKAVTDACSLQ------- 120
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI--SGGERKRVTTG 335
PDID+ L T +G+ RGI SGG+R+R+
Sbjct: 121 -PDIDL------------------------LPFGDQTEIGE---RGINLSGGQRQRICVA 152
Query: 336 EMMVGPALALFMDEISTGLD 355
+ +F+D+ + LD
Sbjct: 153 RALYQNTNIVFLDDPFSALD 172
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 24/110 (21%), Positives = 42/110 (38%), Gaps = 12/110 (10%)
Query: 960 MELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELV--ANPSIIFMDEPTSGLDARAAA 1017
E + + L Q L+ + G S RL +A+ L P ++ +DE TS LDA A
Sbjct: 38 GEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA 97
Query: 1018 IVMRTVRNTVD------TGRTVVCTIHQPGI----DIFDAFDELFLMKRG 1057
+++ + TV+ T + + FD ++
Sbjct: 98 LLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1039
LS Q++R+ IA L NPS+I +DE TS LD A ++ VR + T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH- 201
Query: 1040 PGIDIFDAF--DELFLMKRG 1057
D+ +A D + +M +G
Sbjct: 202 ---DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 40/166 (24%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGR---KTGGYITGNITISGYPKKQETFARISGY 918
G+ + ++G +G GKTT + +L+G G T+S Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVS-Y-KPQYIKADYEG- 76
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
TV + LL S D T F E+ + ++++ ++ V
Sbjct: 77 -----------TVRD-LLSSI------TKDFYTHPYFKTEIAKPLQIEQILDREV----- 113
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 114 PELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 7e-04
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 53/258 (20%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMG 220
K ++ DVS + G + LLGP +GKTT + G + D SG++ + D+
Sbjct: 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-----SGKILLDDEDIT 69
Query: 221 EFVPERTA----AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIK 276
+ + A Y+ Q + ++TV + + R + L + R+E
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLE-----IREKDLKKAERKE------ 118
Query: 277 PDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
E + + L+ + D+ +SGGER+RV
Sbjct: 119 -----------------ELDAL----LEEFHITHLRDSKAY-----SLSGGERRRVEIAR 152
Query: 337 -MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
+ P L DE G+D I +K + G V+ ET D+ D
Sbjct: 153 ALAANPKFILL-DEPFAGVDPIAVIDIQRIIKH--LKDRGIGVLITDHNVRETLDICDRA 209
Query: 396 ILLSDGQIVYQG-PRELV 412
++SDG+++ +G P E+V
Sbjct: 210 YIISDGKVLAEGSPEEIV 227
|
Length = 243 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 55/261 (21%), Positives = 101/261 (38%), Gaps = 49/261 (18%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN-GHDMGEF 222
L L +VS I G ++G SGKTT + L L L +G + + + +
Sbjct: 19 ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWIFKDEKNKK 75
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVG-----SRYELLTELARRENEAGIKP 277
+ + I + ++ + VG + Y+L E I
Sbjct: 76 KTKEKEKVLE--KLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF--------EQTI-- 123
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR---GISGGERKRVT- 333
+ DI ++ +EA Y++++GL+ + R +SGG+++RV
Sbjct: 124 EKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDE-------SYLQRSPFELSGGQKRRVAL 176
Query: 334 TGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
G + + P L DE + GLD +I+ +++ T ++ T+DL D
Sbjct: 177 AGILAMEPDF-LVFDEPTAGLDPQGVKEILEIFD-NLNKQGKTIILV-------THDL-D 226
Query: 394 DI-------ILLSDGQIVYQG 407
++ I DG+I+ G
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 24/168 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS--GRKTGG--YITGNITISGYPKKQETF 912
L+G+S G A++G SG GK+TL +L+ TGG Y G + + +
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKADPEAQKL 89
Query: 913 ARISGYCEQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETRKMFIEEVMELVE 964
R I F Y SL + L + + + R+ +M V
Sbjct: 90 LR-------QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVG 142
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
L+P + P + S QR+R+ IA L+ +P ++ DEP S LD
Sbjct: 143 LRP--EHYDRYPHM--FSGGQRQRIAIARALMLDPDVVVADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 47/184 (25%), Positives = 70/184 (38%), Gaps = 52/184 (28%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS---GRKTGGYITGNITISGYPKKQETFA 913
+ G+ F +TAL+G SG+GK+T + L+ +TG I G
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI-------- 87
Query: 914 RISGYCEQNDIHSPFVTVYE--SLLYSAWLRLPP-------------EVDSETRKMFIEE 958
DI+ + VYE + + R P E K ++E
Sbjct: 88 ---------DINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDE 138
Query: 959 VMELVELKP----------LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
++E LK L +S + L G Q++RL IA + P I+ MDEP
Sbjct: 139 IVE-TSLKQAALWDQVKDDLHKSALTLSG------GQQQRLCIARAIAVKPDILLMDEPA 191
Query: 1009 SGLD 1012
S LD
Sbjct: 192 SALD 195
|
Length = 267 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-04
Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 19/190 (10%)
Query: 858 NGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITI---SGYPKKQET 911
+S + G + G+ G+G+T LM+ L G R G I S ++
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG 339
Query: 912 FARISGYCEQNDIHSPF-----VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
A I+ N F + + SL + + E EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 967 --PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ Q++ L G Q+K L I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQNITELSG-----GNQQKVL-ISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1025 NTVDTGRTVV 1034
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 8e-04
Identities = 59/250 (23%), Positives = 102/250 (40%), Gaps = 38/250 (15%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
PS ++ + +LK +S I G M ++G SGK+TL+ L G LD + RV G D
Sbjct: 15 PSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVA--GQD 71
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
+ + A RE F + RY LL+ L +N
Sbjct: 72 VATLDADALAQL------------RREHFGF------IFQRYHLLSHLTAAQN------- 106
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ + + + L+ LGLE + +SGG+++RV+ +
Sbjct: 107 VEVPAVYAGLERKQRLLRAQE--LLQRLGLEDRVEYQPSQ-----LSGGQQQRVSIARAL 159
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ + DE + LDS + +++ L Q + G VI ++ P+ + +I +
Sbjct: 160 MNGGQVILADEPTGALDSHSGEEVMAILHQLR--DRGHTVI-IVTHDPQVAAQAERVIEI 216
Query: 399 SDGQIVYQGP 408
DG+IV P
Sbjct: 217 RDGEIVRNPP 226
|
Length = 648 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 45/162 (27%), Positives = 77/162 (47%), Gaps = 14/162 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY--ITGNITISGYPKKQETFAR 914
L ++ G AL+G SG+GK+T+ ++L T Y G I + G+ + T A
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 915 ISGYC---EQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQ 970
+ QN +H T+ ++ Y+ + E E +M M+ + + +
Sbjct: 415 LRNQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMDNGLD 471
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 472 TVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALD 512
|
Length = 582 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 8e-04
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 25/156 (16%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFAR--ISGYCEQN 922
G A++G SGAGK+TL+++++G T +G++T++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 923 DIHSPFVTVYE--SLLYSAWLRLPPE----VDSETRKMFIEEVMELVELKPLIQSLVGLP 976
++ +TV + L + L+L + + R+M IE+++ LP
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLAR------------LP 127
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 128 G--QLSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.001
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 316 VGDEMIRGISGGERKRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINS 374
V + + G+SGG+++RV + + P + L +DE ++ LD T ++ LK +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDV-LLLDEPTSALDPITRREVRALLKS-LQAQL 150
Query: 375 GTAVISLLQPAPETYDLFDDIILLSDGQ 402
G V+ + E L D +++L DG+
Sbjct: 151 GITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 51/265 (19%), Positives = 102/265 (38%), Gaps = 67/265 (25%)
Query: 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG-- 220
K +++DVS + G + LLGP +GKTT + G + +G + + D+
Sbjct: 14 KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLL 70
Query: 221 ----------EFVPERTAAY--ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
++P+ + + +S +DN + + +R+ L+ R
Sbjct: 71 PLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR--------------ED 116
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
R NE ++ +++++ L D M + +SGGE
Sbjct: 117 RANE------------------------LMEEFHIEHLR----------DSMGQSLSGGE 142
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
R+RV + + +DE G+D + I + +H+ +SG V+ ET
Sbjct: 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII-EHLR-DSGLGVLITDHNVRET 200
Query: 389 YDLFDDIILLSDGQIVYQGPRELVL 413
+ + ++S G ++ G +L
Sbjct: 201 LAVCERAYIVSQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 51/195 (26%), Positives = 82/195 (42%), Gaps = 28/195 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-------RKTGGYITGNITISGYPKKQ 909
LN +S + G TAL+G +G+GK+T+ +++G + IT+ G
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS------KITVDGITLTA 76
Query: 910 ETFARIS---GYCEQNDIHSPFV--TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
+T I G QN + FV TV + + + R V + +V+ V
Sbjct: 77 KTVWDIREKVGIVFQNP-DNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVG 132
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ I S + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 133 MLDYIDS-----EPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIR 187
Query: 1025 N-TVDTGRTVVCTIH 1038
TV+ H
Sbjct: 188 KLKKKNNLTVISITH 202
|
Length = 282 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 0.001
Identities = 58/238 (24%), Positives = 99/238 (41%), Gaps = 50/238 (21%)
Query: 175 IKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPE---RTAA 229
+ G+ L+GP +GKT+LL AL G L SLK+ NG ++ E PE + +
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKI------NGIELRELDPESWRKHLS 426
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
++ Q + + T+R+ + PD + +A+
Sbjct: 427 WVGQ-NPQLPHGTLRDNVLLG-------------------------NPDASDEQLQQAL- 459
Query: 290 TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDE 349
+ A V L GL DT +GD+ G+S G+ +R+ ++ P L +DE
Sbjct: 460 ---ENAWVSEFLPLLPQGL----DTPIGDQAA-GLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 350 ISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ LD+ + ++ L + V L+ + +D I ++ DGQIV QG
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.001
Identities = 52/242 (21%), Positives = 97/242 (40%), Gaps = 44/242 (18%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAG--KLDSSLKVSGRVTYNGHDMGEF 222
+LK + +K G + +++GP SGK+TLL + + D SG + +G
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD-----SGTIIIDGLK---- 63
Query: 223 VPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
++ +I +R+ + V ++ L L EN I P
Sbjct: 64 --------LTDDKKNI--NELRQKVGM------VFQQFNLFPHLTVLEN---ITLAP--- 101
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-MMVGP 341
+K EA L+ +GL A D +SGG+++RV + + P
Sbjct: 102 --IKVKGMSKAEAEERALELLEKVGLADKA-----DAYPAQLSGGQQQRVAIARALAMNP 154
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
+ LF DE ++ LD ++++ +K G ++ + ++ D +I + DG
Sbjct: 155 KVMLF-DEPTSALDPELVGEVLDVMKDLAE--EGMTMVVVTHEMGFAREVADRVIFMDDG 211
Query: 402 QI 403
+I
Sbjct: 212 RI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 59/270 (21%), Positives = 108/270 (40%), Gaps = 71/270 (26%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT---LLLALAGKLD 203
F+++ F Y P+R L +L+DVS + PG +T L+GP SGK+T LL
Sbjct: 14 FQNVTFAY----PTRPDTL-VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 204 SSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGS-R 259
G+V +G + ++ + + + Q ++++ +A+ G+ S
Sbjct: 69 ------GQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFAR-SLQDNIAY-----GLQSCS 116
Query: 260 YELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319
+E + E A++ + + L DT VG+
Sbjct: 117 FECVKEAAQKAHAHSF-----------------------------ISELASGYDTEVGE- 146
Query: 320 MIRG--ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA 377
+G +SGG+++RV ++ L +DE ++ LD+ + Q V
Sbjct: 147 --KGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE-QQVQQALYDWPERRTVL 203
Query: 378 VI----SLLQPAPETYDLFDDIILLSDGQI 403
VI S ++ A D I++L G+I
Sbjct: 204 VIAHRLSTVERA-------DQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 47/260 (18%)
Query: 156 GILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYN 215
G L K+ +L +VS I+ G LLG GK+TL L G L+ + G V++
Sbjct: 15 GGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQ--GTVSFR 71
Query: 216 GHDMGEFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
G D+ + + R + Q + + R T+ Q +G LT L
Sbjct: 72 GQDLYQLDRKQRRAFRRDVQLVFQ--DSPSAVNPRMTVR-----QIIGEPLRHLTSLDES 124
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E +A I L ++GL + D++ R +SGG+
Sbjct: 125 EQKARIA------------------------ELLDMVGL----RSEDADKLPRQLSGGQL 156
Query: 330 KRVTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
+R+ + V P L + +DE + LD I+ L++ + GTA + +
Sbjct: 157 QRINIARALAVKPKL-IVLDEAVSNLDMVLQAVILELLRK-LQQAFGTAYLFITHDLRLV 214
Query: 389 YDLFDDIILLSDGQIVYQGP 408
+ ++ GQIV +
Sbjct: 215 QSFCQRVAVMDKGQIVEECD 234
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 59/277 (21%), Positives = 105/277 (37%), Gaps = 60/277 (21%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-- 225
+ D S ++ G + +++G SGK+TL+ L ++ + G + +G D+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAEL 100
Query: 226 -----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + + Q + TV E +AF QGV A RE A
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVP--------KAEREERA------- 145
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
++A+ G E Y D+ +SGG ++RV +
Sbjct: 146 ----LEALELVGLE-----GY---------------ADKYPNELSGGMQQRVGLARALAN 181
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
L MDE + LD ++ + L + + ++ + E + D I ++ D
Sbjct: 182 DPDILLMDEAFSALDPLIRTEMQDELLE-LQAKLKKTIVFITHDLDEALRIGDRIAIMKD 240
Query: 401 GQIVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEV 436
G+IV G P E++L P V DF++ V
Sbjct: 241 GEIVQVGTPEEILLN---------PANDYVRDFVRNV 268
|
Length = 386 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 324 ISGGERKRV-TTGEMMVGPALALF-MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381
+SGGE +RV E+ P LF +DE STGL Q++ +K I+ G VI L
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG--LIDLGNTVI-L 144
Query: 382 LQPAPETYDLFDDIILL------SDGQIVYQG 407
++ + D II S G++V+ G
Sbjct: 145 IEHNLDVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 17/194 (8%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---YPKKQETF 912
+L GL+ + G + A+MG +G+GK+TL V++G + G+I G + E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81
Query: 913 ARISGYCE-QNDIHSPFVT-------VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
A + + Q I P V+ Y S L PE+D I E ++LV
Sbjct: 82 AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGL---PELDPLEFLEIINEKLKLVG 138
Query: 965 LKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+ P S G SG ++KR I + + + +DE SGLD A I+ +
Sbjct: 139 MDPSFLSRNVNEGFSG---GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGIN 195
Query: 1025 NTVDTGRTVVCTIH 1038
+ + +++ H
Sbjct: 196 KLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 58/256 (22%), Positives = 104/256 (40%), Gaps = 66/256 (25%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
HL + D++ ++ G +LGP +GK+TLL +AG L + SG +T NG D
Sbjct: 13 HLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTP 67
Query: 224 P-ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
P R + + Q +N +TV + + G+ G+K +
Sbjct: 68 PSRRPVSMLFQENNLFSHLTVAQNIGL-----GL---------------NPGLKLNAAQR 107
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ AIA + +G+E + G +SGG+R+RV +V
Sbjct: 108 EKLHAIARQ--------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQ 148
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL----------QPAPETYDLF 392
L +DE + LD + +++ + Q ++LL + AP +
Sbjct: 149 PILLLDEPFSALDPALRQEMLTLVSQVCQ----ERQLTLLMVSHSLEDAARIAPRS---- 200
Query: 393 DDIILLSDGQIVYQGP 408
++++DG+I + GP
Sbjct: 201 ---LVVADGRIAWDGP 213
|
Length = 232 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 43/179 (24%), Positives = 74/179 (41%), Gaps = 39/179 (21%)
Query: 869 LTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISG---YPKKQETF---ARI 915
+TA +G SG GK+T + D + K + G + I G Y A++
Sbjct: 33 VTAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGIDVYSVDTNVVLLRAKV 88
Query: 916 SGYCEQNDIHSPFV-TVYESLLYSAWL--------RLPPEVDSETRKMFIEEVMELVELK 966
G Q +PF ++Y+++ Y L +L V+ + + E EL
Sbjct: 89 -GMVFQKP--NPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWE-----ELG 140
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
++ LS Q++RL IA + P+++ MDEP S LD A ++ ++
Sbjct: 141 DRLKD-----SAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
|
Length = 251 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.001
Identities = 49/208 (23%), Positives = 92/208 (44%), Gaps = 14/208 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFA 913
LN S F+ +T ++G +G+GK+T++ + +G +TG I G+ I KK +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 914 RIS---GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R+ G Q + F E + + L E ++ ++V EL++L L +
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-----GENKQEAYKKVPELLKLVQLPE 141
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT-VRNTVDT 1029
V LS Q++R+ +A + + + + +DEPT GLD + + R +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ ++ H + DE+ +M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 56/207 (27%), Positives = 93/207 (44%), Gaps = 19/207 (9%)
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGY--PKKQETFARI 915
+ + G A++G +G+GK+TL+ L+G + T G +T G I+ KK + +
Sbjct: 27 NVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKK 86
Query: 916 SGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSL 972
G Q H F TV + + + E D++ + E++ELV L L +S
Sbjct: 87 VGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELLARSP 143
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RNTVDTGR 1031
L G Q +R+ IA L P ++ +DEPT+GLD + +M + + G
Sbjct: 144 FELSG------GQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGL 197
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRGG 1058
T V H D D++ +M +G
Sbjct: 198 TTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 14/83 (16%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+L+DVS + G++T++LG SGK+TLL +L + + S GRV ER
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEIS---EGRV----------WAER 721
Query: 227 TAAYISQHDNHIGEMTVRETLAF 249
+ AY+ Q I TVR + F
Sbjct: 722 SIAYVPQQ-AWIMNATVRGNILF 743
|
Length = 1560 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 54/195 (27%), Positives = 88/195 (45%), Gaps = 38/195 (19%)
Query: 840 MPQEMKLQGV--LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSG- 889
M ++K++GV K +L ++ F +TA++G SG GK+TL+ D++SG
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 890 RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVD 948
R G + N I + G Q +PF ++++++ + P +
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQP--NPFPKSIFDNVAFG------PRML 112
Query: 949 SETRKMFIEEVMELVELKPLIQSLV-----------GLPGVSGLSTEQRKRLTIAVELVA 997
T + ++EV+E K L Q+ + GL LS Q++RL IA L
Sbjct: 113 GTTAQSRLDEVVE----KSLRQAALWDEVKDNLHKSGL----ALSGGQQQRLCIARVLAI 164
Query: 998 NPSIIFMDEPTSGLD 1012
P +I MDEP S LD
Sbjct: 165 EPEVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 39/206 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L D+S + PG + +L+GP +GKTTL+ + GK G V ++G
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGD---------- 67
Query: 228 AAYISQHDNH-IGEMTVRETLAFSARCQGVGSRYE---LLTELARREN-EAGIKPDPDID 282
+++ H I G+G +++ + L REN E + D +
Sbjct: 68 -TDLTKLPEHRIARA-------------GIGRKFQKPTVFENLTVRENLELALNRDKSVF 113
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ A + + D L +GL D + +S G+++ + G ++
Sbjct: 114 ASLFARLRAEERRRI--DELLATIGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDP 166
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQ 368
L +DE G+ + T + LK
Sbjct: 167 KLLLLDEPVAGMTDAETEKTAELLKS 192
|
Length = 249 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 24/192 (12%)
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT-TGEMMVGPALAL 345
A+ + EA + +YL +GL D + G+SGG+++RV G + + P + +
Sbjct: 144 ALGVKKSEAKKLAKFYLNKMGL----DDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199
Query: 346 FMDEISTGLD---SSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
F DE + GLD Q++ K + V + ++ D++I++ G+
Sbjct: 200 F-DEPTAGLDPKGEHEMMQLILDAKA-----NNKTVFVITHTMEHVLEVADEVIVMDKGK 253
Query: 403 IVYQG-PRELVL--EFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVE 459
I+ G P E+ S + P+ V + ++ +KD K Y +K R T+E
Sbjct: 254 ILKTGTPYEIFTDQHIINSTSIQVPR---VIQVINDL-IKKDPK-YKKLYQKQPR--TIE 306
Query: 460 EFAEAFQSFHVG 471
+ A+A F G
Sbjct: 307 QLADAINEFIKG 318
|
Length = 320 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.002
Identities = 39/166 (23%), Positives = 68/166 (40%), Gaps = 29/166 (17%)
Query: 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGY 918
G G + ++G +G GKTT + +L+G + G ++ +S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE-DLKVS-Y-KPQYISPDYDG- 416
Query: 919 CEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978
TV + L + S F E+++ + L+ L++ V
Sbjct: 417 -----------TVEDLL----RSAIRSAFGSS---YFKTEIVKPLNLEDLLERPV----- 453
Query: 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 52/258 (20%), Positives = 101/258 (39%), Gaps = 53/258 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNG-----HDMG 220
L D++ I ++T L+GP GK+T L L L S++K+ G V +G D+
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 221 EFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
+ + Q N M++ + +A+ R G+ + EL
Sbjct: 80 VVELRKRVGMVFQKPNPF-PMSIYDNVAYGPRIHGIKDKKEL------------------ 120
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR---GISGGERKRVTTGEM 337
+ I ++ LK L V D++ + +SGG+++R+
Sbjct: 121 ---------------DKIVEWALKKAALW----DEVKDDLKKSALKLSGGQQQRLCIART 161
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD-----LF 392
+ + MDE ++ LD +T +I + + + + V +Q A D L
Sbjct: 162 IAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLM 221
Query: 393 DDIILLSDGQIVYQGPRE 410
D+I + + ++ P++
Sbjct: 222 GDLIEFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 68/272 (25%), Positives = 107/272 (39%), Gaps = 83/272 (30%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD--------MGE 221
DVS + PG + ++G SGKTTLL AL+ +L +G V Y D + E
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSE 80
Query: 222 FVPERTA------AYISQHDNHIGEMTVRETLAFSA------RCQGVGSR-YELLTELAR 268
ER ++ QH M V SA R VG+R Y + A
Sbjct: 81 --AERRRLLRTEWGFVHQHPRDGLRMQV------SAGGNIGERLMAVGARHYGDIRATA- 131
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
D+ +V E+ A + D++ SGG
Sbjct: 132 ------------------------------GDWLERV---EIDAARI--DDLPTTFSGGM 156
Query: 329 RKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387
++R+ +V P L +FMDE + GLD S ++++ L+ V G AV+ +
Sbjct: 157 QQRLQIARNLVTHPRL-VFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIV------ 208
Query: 388 TYD------LFDDIILLSDGQIVYQGPRELVL 413
T+D L ++++ G++V G + VL
Sbjct: 209 THDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHI 372
DT + + + R SGGER+R+ +++ A + +DE + GLD T Q+++ + + +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-- 145
Query: 373 NSGTAVISLLQPAPETYDL-----FDDIILLSDGQIVYQG 407
+I + T+ L D I+ L +G+I+ QG
Sbjct: 146 -KDKTLIWI------THHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 956 IEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
++ + + I+SL VG G S LS Q++R+ IA L+ P I+ +DE T
Sbjct: 1328 VKRACKFAAIDEFIESLPNKYDTNVGPYGKS-LSGGQKQRIAIARALLREPKILLLDEAT 1386
Query: 1009 SGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1039
S LD+ + ++ +T+ + D +T++ H+
Sbjct: 1387 SSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 67/259 (25%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T++ +++ IK G M LLGP GKTT+L +AG L+ G++ +G D V
Sbjct: 20 TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGED----VTH 72
Query: 226 RTAAYISQHDNHI--------GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
R+ I Q D + M++ E + + + GV E +R EA
Sbjct: 73 RS---IQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA---- 120
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
L+++ L D V D+ ISGG+++RV
Sbjct: 121 -------------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARA 150
Query: 338 MV-GPALALFMDEISTGLDSS---TTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
++ P + LF DE + LD++ + + + L+Q +I S + + E + + D
Sbjct: 151 LILKPKVLLF-DEPLSNLDANLRRSMREKIRELQQQFNITS----LYVTHDQSEAFAVSD 205
Query: 394 DIILLSDGQIVYQG-PREL 411
+I+++ G+I+ G P+EL
Sbjct: 206 TVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 41.7 bits (97), Expect = 0.002
Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 17/258 (6%)
Query: 795 ISGRNSSSKS-------LILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQ 847
I G N S KS L+L RG+ + + DE +++P E +++
Sbjct: 4 IIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNVGIKLLPFLLDE--NEIEIPLEFEIE 61
Query: 848 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907
L D + G + L + R +
Sbjct: 62 EFLIDGIRYRYGFELDKEDILEELLYEYRKGEELLF---ERERSKESFEKSPEKKRELRG 118
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
+E ++ + + + LL +++ ++ V L
Sbjct: 119 LREVLLLLNLSLSSFLLLASLEILLSILLPFSFILGNLRNLRNIELKLLDLVKRLFLESD 178
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVAN---PSIIFMDEPTSGLDARAAAIVMRTVR 1024
L++ L L + G+S ++ L + + L++ S++ +DEP +GL + ++ ++
Sbjct: 179 LLRLLKLL--IKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLK 236
Query: 1025 NTVDTGRTVVCTIHQPGI 1042
+ G ++ T H P +
Sbjct: 237 ELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040
LS +++RL A L+ P +F+DE TS LD + + + ++ + G TV+ H+P
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGITVISVGHRP 148
Query: 1041 GIDIF 1045
+ F
Sbjct: 149 SLWKF 153
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202
+LKD+S I PG L+G +GK+TLL +AG+L
Sbjct: 14 LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL 50
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 45/209 (21%)
Query: 840 MPQEMKLQG-VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT----TLMDVLSG--RKT 892
MPQ+++L+ L+ L++G+S + G + AL+G SG+GK+ + +L R+T
Sbjct: 1 MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 893 GGYITGNITISGYPK-----KQETFARI-----SGYCEQNDIHSPFVTVYESLLYSAWLR 942
G + + G P + A I S + N +H+ E+ L
Sbjct: 61 AG----RVLLDGKPVAPCALRGRKIATIMQNPRSAF---NPLHTMHTHARETCLALG--- 110
Query: 943 LPPEVDSETRKMF---IEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP 999
P + + T + +E +++L P +S +R+ IA+ L+
Sbjct: 111 KPADDATLTAALEAVGLENAARVLKLYPF-----------EMSGGMLQRMMIALALLCEA 159
Query: 1000 SIIFMDEPTSGLDARAAA----IVMRTVR 1024
I DEPT+ LD A A ++ V+
Sbjct: 160 PFIIADEPTTDLDVVAQARILDLLESIVQ 188
|
Length = 254 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 41/168 (24%), Positives = 69/168 (41%), Gaps = 31/168 (18%)
Query: 861 SGAFRPG-VLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFARISG 917
G G V+ + G +G GKTT +L+G G + + IS Y K Q I
Sbjct: 359 GGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQ----YIKP 411
Query: 918 YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977
TV + LL S ++ S + E+++ ++L+ L+ V
Sbjct: 412 --------DYDGTVED-LLRSI----TDDLGSS---YYKSEIIKPLQLERLLDKNV---- 451
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 19/161 (11%)
Query: 860 LSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYC 919
LS R G A++G +G+GK+TL +L+G +G + I +P + Y
Sbjct: 32 LSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT--SGELLIDDHPLHFGDY----SYR 85
Query: 920 EQNDIHSPFVTVYESL--------LYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
Q I F SL + LRL +++ E R+ I E + V L P
Sbjct: 86 SQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLP--DH 142
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 143 ASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 34/164 (20%)
Query: 867 GVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG---YPKK---QETFARISG 917
G +TAL+G SG GK+T++ L+ G + G + G Y + E RI
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 918 YCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV--- 973
+Q + PF ++YE++ + A ++ T M ELVE + L ++ V
Sbjct: 99 VFQQPN---PFPKSIYENIAFGA------RINGYTGDM-----DELVE-RSLRKAAVWDE 143
Query: 974 -----GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 144 CKDKLNESGYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 61/267 (22%), Positives = 109/267 (40%), Gaps = 50/267 (18%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------ 221
L +V+ I+ G L+G SGK+TL+ L G L + SG++ +G D+ +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLS 79
Query: 222 FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
+ ++ + + E T+ + +AF G+ E+ R A
Sbjct: 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSE-----EEIENRVKRA-------- 126
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
M + L E D + +SGG+++RV ++
Sbjct: 127 ---MNIVG----------------LDYEDYKDKSPFE-----LSGGQKRRVAIAGVVAME 162
Query: 342 ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401
L +DE + GLD +I+N +K+ +H +I + + L D II+++ G
Sbjct: 163 PKILILDEPTAGLDPKGRDEILNKIKE-LHKEYNMTIILVSHSMEDVAKLADRIIVMNKG 221
Query: 402 QIVYQG-PRELV--LEFFESMGFKCPK 425
+ QG PRE+ +E ES+G P+
Sbjct: 222 KCELQGTPREVFKEVETLESIGLAVPQ 248
|
Length = 287 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.003
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
L D+S + PG + +++GP +GKTT++ + GK G V + G D+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL 66
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.003
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--AGKLDSSLKVSGRVTYNGHDMGEFVPE 225
LK ++ I ++T L+GP GK+TLL L L +K++G++T +G D+ +
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDV 78
Query: 226 R----TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYEL 262
+ Q N M++ E +A+ R QG+ + L
Sbjct: 79 ADLRIKVGMVFQKPNPF-PMSIYENVAYGLRAQGIKDKKVL 118
|
Length = 249 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/124 (20%), Positives = 40/124 (32%), Gaps = 5/124 (4%)
Query: 284 YMKAIA-TEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT----GEMM 338
+ AI G + G V A + +SGGE++
Sbjct: 37 ILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALAS 96
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ P +DEI GLD + + +H+ + VI+ L E D I +
Sbjct: 97 LKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKKV 156
Query: 399 SDGQ 402
G
Sbjct: 157 ITGV 160
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.003
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
LS Q++R+ IA + P I+ +DEPT+GLD +
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179
|
Length = 287 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.003
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1039
LS Q++R+ IA + P II +DE TS LD +++T++ D TV+ H
Sbjct: 141 LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHD 200
Query: 1040 PGIDIFDAFDELFLMKRGGQE 1060
+D D + +MK G E
Sbjct: 201 --LDEVALSDRVLVMKNGQVE 219
|
Length = 279 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 0.003
Identities = 43/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 869 LTALMGVSGAGKTTLMDVL---SGRKTGGYITGNITISG---YPKKQET--FARISGYCE 920
+TA++G SG GK+T + L S + + G + G Y + R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVF 94
Query: 921 QNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979
Q +PF +++YE++ Y +R+ ++ +E ++ L ++ + +
Sbjct: 95 QRP--NPFPMSIYENVAYG--VRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSAL- 149
Query: 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1019
GLS Q++RL IA L P ++ MDEP S LD A V
Sbjct: 150 GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.003
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 15/205 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET---FA 913
LNG+S + G +++G +G+GK+T ++ G G + I G E
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLR 80
Query: 914 RISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G QN D TV + + + E R+ I+ V E + ++
Sbjct: 81 RKIGMVFQNPDNQFVGATVEDDVAFGM------ENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
P + LS Q++R+ +A + P II +DE TS LD +MR + + +
Sbjct: 135 TREP--ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQL 192
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
V +I +D + D + +MK G
Sbjct: 193 TVLSITH-DLDEAASSDRILVMKAG 216
|
Length = 277 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.004
Identities = 66/262 (25%), Positives = 104/262 (39%), Gaps = 76/262 (29%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
L VS ++PG + LLG +GK+TL+ L+G SG + +G + V +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG----KPVAFSS 76
Query: 228 A--------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
A + Q + + ++V E + L E RR G+
Sbjct: 77 PRDALAAGIATVHQELSLVPNLSVAENIF-------------LGREPTRR---FGL---- 116
Query: 280 DID-VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE-- 336
ID M+ A E L LGL++ DT+VGD +S +R+ V E
Sbjct: 117 -IDRKAMRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQMV---EIA 157
Query: 337 --MMVGPALALFMDEISTGLDSSTT---FQIVNCLKQHVHINSGTAV--IS--LLQPAPE 387
+ + L +DE + L T F ++ LK G A+ IS L E
Sbjct: 158 RALSFDARV-LILDEPTAALTVKETERLFDLIRRLKA-----QGVAIIYISHRL----DE 207
Query: 388 TYDLFDDIILLSDGQIVYQGPR 409
+++ D I +L DG++V P
Sbjct: 208 VFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 19/99 (19%)
Query: 325 SGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLK--QHVH------INSG 375
SGG+R+R+ ++ P L L +DE ++ LD S Q+++ L+ Q H I+
Sbjct: 428 SGGQRQRIAIARALILKPELIL-LDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHD 486
Query: 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
AV+ L +I++ DG+IV QGP E V
Sbjct: 487 LAVVRALC---------HRVIVMRDGKIVEQGPTEAVFA 516
|
Length = 534 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.004
Identities = 62/288 (21%), Positives = 106/288 (36%), Gaps = 57/288 (19%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLAL--------AGKLDSSLKVSGRVTYNGH 217
T+L VS +T L+GP SGKTT L L + + + GR +N
Sbjct: 35 TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYR 94
Query: 218 DMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
D+ EF R + Q N M++ + + R + R E R E G+
Sbjct: 95 DVLEF--RRRVGMLFQRPNPF-PMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGL-- 149
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
+ + D + D R +SGG+++ +
Sbjct: 150 -----------------WDAVKD--------------RLSDSPFR-LSGGQQQLLCLART 177
Query: 338 MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397
+ L +DE ++ LD +TT +I ++ + VI + + + D L
Sbjct: 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRS---LADRLTVIIVTHNLAQAARISDRAAL 234
Query: 398 LSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSR-KDQKQ 444
DG++V +GP E + F PK A ++ ++ KD K+
Sbjct: 235 FFDGRLVEEGPTEQL--------FSSPKHAETARYVAGLSGDVKDAKR 274
|
Length = 276 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 21/73 (28%), Positives = 30/73 (41%)
Query: 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDN 236
PG + L++GPP SGKTTL ALA +L + + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 237 HIGEMTVRETLAF 249
GE+ +R LA
Sbjct: 61 GSGELRLRLALAL 73
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.004
Identities = 67/250 (26%), Positives = 93/250 (37%), Gaps = 76/250 (30%)
Query: 157 ILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG 216
++P +K+ ILKD+S PG +LG +GK+TLL +AG +D + G
Sbjct: 15 VVPPKKQ---ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKE--------FEG 62
Query: 217 HDMGE--FVPERTAAYISQH---DNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
E P Y+ Q D E TVRE + +GV L N
Sbjct: 63 ----EARPAPGIKVGYLPQEPQLDP---EKTVRENVE-----EGVAEVKAALDRF----N 106
Query: 272 EAGIK---PDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCADTM---VGD 318
E PD D D E QE + LE+ D + D
Sbjct: 107 EIYAAYAEPDADFDALAAEQG-ELQEI-------IDAADAWDLDSQLEIAMDALRCPPWD 158
Query: 319 EMIRGISGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQH 369
+ +SGGER+RV AL L +DE + LD+ + V L+Q
Sbjct: 159 AKVTKLSGGERRRV---------ALCRLLLEKPDMLLLDEPTNHLDAES----VAWLEQF 205
Query: 370 VHINSGTAVI 379
+H GT V
Sbjct: 206 LHDYPGTVVA 215
|
Length = 556 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 19/51 (37%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTY 214
+LK+++ I+ G M + G SGKT+LL+ + G+L+ S +K SGR+++
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISF 102
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1426 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-254 Score=2338.89 Aligned_cols=1321 Identities=53% Similarity=0.917 Sum_probs=1236.8
Q ss_pred cChhHhhhHHHHhhCCChhhhhhcccccC-CCCcceeccCCcChHhhHHHHHHhhhcccccHHHHHHHHHHHHhhcCCCC
Q 000556 36 EDDEEALKWAALEKLPTYNRLRKGLLTTS-RGEAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDL 114 (1426)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (1426)
+||||+|||||+|||||++| +++.+. ++ ++|+.+++..+++.++++..+..++|+++++.++++|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999999 555432 22 79999999999999999999999999999999999999998 89
Q ss_pred CccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeecceEEEeCCeEEEEEcCCCCcHHHH
Q 000556 115 PKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTL 194 (1426)
Q Consensus 115 p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTL 194 (1426)
|.++++++++.+++++..| ||+.|...+.++.+++..+.. ++...+||+|+||.++||||++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999998766 999999999999888766543 5566889999999999999999999999999999
Q ss_pred HHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcC
Q 000556 195 LLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274 (1426)
Q Consensus 195 L~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 274 (1426)
||+|+|.++...+..|+|+|||++.+++.+++.++|++|+|.|+|+|||||||+|+++|++++.|++ +..|+|++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999998777789999999999999999999999999999999999999999999999999887 555666531
Q ss_pred CCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCC
Q 000556 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGL 354 (1426)
Q Consensus 275 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgL 354 (1426)
.++|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000556 355 DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1426)
Q Consensus 355 Ds~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1426)
|++|+.+|+++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHH
Q 000556 435 EVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELL 514 (1426)
Q Consensus 435 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l 514 (1426)
++++++++.++|..+..|+.+.+++|+.+.|..++.++++..+++.+.++.+.++.++..++|..+.|+|+++|+.|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCC
Q 000556 515 LMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRF 594 (1426)
Q Consensus 515 ~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~ 594 (1426)
+++||.+++++++++.+++|+++|++|+++.+ ++..+...+.|++||++++.+|++++++++.++++|||+|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999885 5566788899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccc----
Q 000556 595 FPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF---- 670 (1426)
Q Consensus 595 y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~---- 670 (1426)
|++||+.++.+++++|..++++++|.+|+||++|+.+++++||.|++++++.+++++++||+++++++++..|+.+
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred --------------ccccccchhhhhhcHHHHHHHHHHHHHhcCCccccc------------CCC---CccchhHHHhhc
Q 000556 671 --------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKF------------TPN---SYESIGVQVLKS 721 (1426)
Q Consensus 671 --------------~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~------------~~~---~~~~~g~~~L~~ 721 (1426)
.+||+||+|++|++|++|+++++++|||++.+|.|. ... ...+.|.++++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 789999999999999999999999999999999997 111 135678899998
Q ss_pred cCcc-----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCccc
Q 000556 722 RGFF-----AHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDIS 796 (1426)
Q Consensus 722 ~~~~-----~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1426)
+++. ....|+|+++|+++||.++|++.+++++.|+++..+.++.+..+........... ... ....
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~-------~~~--~~~~ 760 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSA-------GSS--SEIE 760 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhc-------ccc--cccc
Confidence 8888 7788999999999999999999999999999999888877654433221111000 000 0000
Q ss_pred CCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccC
Q 000556 797 GRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVS 876 (1426)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~s 876 (1426)
......+.+++++..|+.|..++++||.|.+++|-+++.+| +++++|+||||.++||.++||||+|
T Consensus 761 -----------~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~S 826 (1391)
T KOG0065|consen 761 -----------KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGES 826 (1391)
T ss_pred -----------ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCC
Confidence 00001111345778899999999999999999999888776 6788999999999999999999999
Q ss_pred CCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 000556 877 GAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFI 956 (1426)
Q Consensus 877 GaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v 956 (1426)
|||||||||+||||+++|.++|+|+|||+|+++..++|.+|||+|+|+|.|.+||+|.|.|+|+||+|.+++.+++.++|
T Consensus 827 GAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yV 906 (1391)
T KOG0065|consen 827 GAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYV 906 (1391)
T ss_pred CCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 000556 957 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1035 (1426)
Q Consensus 957 ~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p-~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 1035 (1426)
|+|++.++|++++|.+||.|| +|||++|||||+||+||++|| .||||||||||||++++..|++++|+++++|+||||
T Consensus 907 e~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlC 985 (1391)
T KOG0065|consen 907 EEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILC 985 (1391)
T ss_pred HHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEE
Confidence 999999999999999999999 999999999999999999999 899999999999999999999999999999999999
Q ss_pred EecCCCHHHHhhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceEEEeccccchhhcccCHHHH
Q 000556 1036 TIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDI 1115 (1426)
Q Consensus 1036 ~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~ 1115 (1426)
|+||||.++|+.||++++|++||++||+||.|++++++++||++++|++ |++..||||||||+++.+.+.+.+.||+++
T Consensus 986 TIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~ 1064 (1391)
T KOG0065|consen 986 TIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEI 1064 (1391)
T ss_pred EecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHH
Confidence 9999999999999999999999999999999999999999999999885 555559999999999999888889999999
Q ss_pred HHhcHHHHHHHHHHHHhcCCCCC-CCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhcc
Q 000556 1116 FRCSELYRRNKALIEELSKPTPG-SKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWD 1194 (1426)
Q Consensus 1116 ~~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~ 1194 (1426)
|++|++++++++++++++.+.++ ..+..++++|++|+|.|++.|+|||+++|||+|+|+++|++++++.||++|++||+
T Consensus 1065 w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~ 1144 (1391)
T KOG0065|consen 1065 WKNSEEYKRNKELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWK 1144 (1391)
T ss_pred HhccHHHHHHHHHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeee
Confidence 99999999999999999999988 88888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhh
Q 000556 1195 MGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVI 1274 (1426)
Q Consensus 1195 ~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i 1274 (1426)
+|+ ++||++|.+|++|+++++.+.+++..++|.+..||.++||||++||||+.+|++||+++|+||+++++++|.+|
T Consensus 1145 ~g~---~~q~lqn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~ 1221 (1391)
T KOG0065|consen 1145 VGH---NVQGLQNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLI 1221 (1391)
T ss_pred cCC---cHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 994 68999999999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred eecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccC
Q 000556 1275 VYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWAN 1354 (1426)
Q Consensus 1275 ~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~is 1354 (1426)
+|+|+||++++.+|+||++++++..+|++++|||+++++||.++|+++++++++++++||||++|++.||.||+||||+|
T Consensus 1222 ~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~ls 1301 (1391)
T KOG0065|consen 1222 TYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLS 1301 (1391)
T ss_pred eeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcccccC----------CCCcHHHHHHhhcC----CccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000556 1355 PVAWTLYGLIASQFGDVEDQME----------NGETVKHFLRDYFG----FKHDFLGLVAGVLTCFVALFGFVFALGIKQ 1420 (1426)
Q Consensus 1355 p~~y~~~~l~~~~~~~~~~~~~----------~g~~~~~~~~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1420 (1426)
|++|.++|++..++||.+..|. +|+||++|++.+|| |.++.......+..+|.+++.+++.+++|+
T Consensus 1302 P~ty~l~gli~~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y 1381 (1391)
T KOG0065|consen 1302 PVTYTLEGLISSQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKY 1381 (1391)
T ss_pred cHHHHHHHHHHHHhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHH
Confidence 9999999999999999999883 45799999999999 999999888889999999999999999999
Q ss_pred hcccCC
Q 000556 1421 LNFQRR 1426 (1426)
Q Consensus 1421 ~~~~~r 1426 (1426)
.|+|||
T Consensus 1382 ~~~wrn 1387 (1391)
T KOG0065|consen 1382 LNFWRN 1387 (1391)
T ss_pred HHHHHh
Confidence 999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-235 Score=2338.88 Aligned_cols=1421 Identities=60% Similarity=1.047 Sum_probs=1263.0
Q ss_pred CCCcccccccccccccccccCCccccccc---C----CccChhHhhhHHHHhhCCChhhhhhcccccC-----CCC---c
Q 000556 4 SHDSYLASTSLRGNISRWRTSSVGAFSKS---L----REEDDEEALKWAALEKLPTYNRLRKGLLTTS-----RGE---A 68 (1426)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~ 68 (1426)
.||+..++-+.+.+.++|.. +++|++. + ..|||||+|+|||+||||||+|+|++++.+. .|+ .
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1470)
T PLN03140 4 RGGSMRRSISRSVSRSSRNM--EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLH 81 (1470)
T ss_pred CcccHHHHHHHHhhhhhhhh--hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccc
Confidence 45555555444444456744 6888542 1 2678999999999999999999999999652 122 2
Q ss_pred ceeccCCcChHhhHHHHHHhhhcccccHHHHHHHHHHHHhhcCCCCCccEEEEeceEEEEEEecCCCCCCChhHHHHHHH
Q 000556 69 FEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVF 148 (1426)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~ 148 (1426)
.|+|+++|+.++++.+++++++++++|+++|++++++|+|++|+++|++||||+||+|++++.++++++||++|.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~ 161 (1470)
T PLN03140 82 KEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIA 161 (1470)
T ss_pred cccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHH
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCCCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceE
Q 000556 149 EDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228 (1426)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~ 228 (1426)
+.+.+.++..++++.+++||+|+||.++|||+++|+||||||||||||+|+|+++++.+++|+|+|||+++++..+++.+
T Consensus 162 ~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i 241 (1470)
T PLN03140 162 ESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTS 241 (1470)
T ss_pred HHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhccccee
Confidence 88876555444555678899999999999999999999999999999999999988777899999999998877667889
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCC
Q 000556 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1426)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL 308 (1426)
+||+|+|.|++++||+|||.|+++|++.+.++++..+..+++++.++.|+.++|.+|++.+.++.+.+..++++|+.+||
T Consensus 242 ~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL 321 (1470)
T PLN03140 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321 (1470)
T ss_pred EEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCC
Confidence 99999999999999999999999998877766666667778888888888888999999988888888899999999999
Q ss_pred cccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhH
Q 000556 309 EVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1426)
Q Consensus 309 ~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~ 388 (1426)
++|+||.||++++++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.+++
T Consensus 322 ~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i 401 (1470)
T PLN03140 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET 401 (1470)
T ss_pred ccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998766789999999999999
Q ss_pred HhhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhc
Q 000556 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSF 468 (1426)
Q Consensus 389 ~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (1426)
+++||+|++|++|+++|+||++++.+||+++||+||+++|+|||+++++++++++++|.....|+++.++++++++|+++
T Consensus 402 ~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s 481 (1470)
T PLN03140 402 FDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481 (1470)
T ss_pred HHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999988888887776777778999999999999
Q ss_pred ccchhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q 000556 469 HVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHK 548 (1426)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~ 548 (1426)
+.++++.++++.|.++...++.....++|..++++|+++|++|++++++||+..+++++++.+++|+++|++|++++++.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~ 561 (1470)
T PLN03140 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561 (1470)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 99988888877776665556666666789999999999999999999999999999999999999999999999987665
Q ss_pred CcccccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccc
Q 000556 549 HSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIG 628 (1426)
Q Consensus 549 ~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~g 628 (1426)
.+..++..+.|++||++++.++++++++++++.+||||+|||+.+||++|+|+++++++++|+.++++++|++++|||+|
T Consensus 562 ~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~G 641 (1470)
T PLN03140 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIG 641 (1470)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcC
Confidence 55556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccc------------------ccccccchhhhhhcHHHHHH
Q 000556 629 CDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQ 690 (1426)
Q Consensus 629 l~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~------------------~~ip~~~~W~~~isp~~y~~ 690 (1426)
+.+++++||.|++++++++++++++|++++++++++.+|+.+ ++||+||+|++|+||++|++
T Consensus 642 l~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~ 721 (1470)
T PLN03140 642 FAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721 (1470)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHH
Confidence 999999999999999999999999999999999999988755 78999999999999999999
Q ss_pred HHHHHHHhcCCcccccC-CCCccchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeecc
Q 000556 691 NAIVANEFLGYSWKKFT-PNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEE 769 (1426)
Q Consensus 691 ~al~~nef~~~~~~~~~-~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~ 769 (1426)
+|+++|||.+.+|.+.. .+...+.|.++|+.+++...+.|+|+++++|++++++|+++++++++|.++.....+.+..+
T Consensus 722 eal~~NEf~~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~ 801 (1470)
T PLN03140 722 NALAVNEMFAPRWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801 (1470)
T ss_pred HHHHHHhccCccccCcccCCCCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCcccccc
Confidence 99999999999887432 23346789999999999998899999999999999999999999999998766655544222
Q ss_pred ccccccccc-cc-cccccccCCC--CCCc--ccCCCC-CcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecch
Q 000556 770 SESNKQDNR-IR-GTVQLSARGE--SGED--ISGRNS-SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQ 842 (1426)
Q Consensus 770 ~~~~~~~~~-~~-~~~~~~~~~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~ 842 (1426)
......... .. .......... .... ...... ................++++.+|+.|..++|+||+|.++.+.
T Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~ 881 (1470)
T PLN03140 802 TAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPA 881 (1470)
T ss_pred chhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCc
Confidence 111000000 00 0000000000 0000 000000 000000000000122345667788999999999999999887
Q ss_pred hhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccC
Q 000556 843 EMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQN 922 (1426)
Q Consensus 843 ~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~ 922 (1426)
+++..+..++++.+|+|||+.++||+++||||||||||||||++|+|+.+++..+|+|.+||.+..+..+++.+|||+|+
T Consensus 882 ~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~ 961 (1470)
T PLN03140 882 EMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQN 961 (1470)
T ss_pred cccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccc
Confidence 66555555566789999999999999999999999999999999999987777899999999987655567789999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeE
Q 000556 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1002 (1426)
Q Consensus 923 ~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iL 1002 (1426)
|.+++.+||+|+|.|++.+|.+.+.+.++++++++++++.+||.+++|+.+|.+++++|||||||||+||++|+++|+||
T Consensus 962 d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL 1041 (1470)
T PLN03140 962 DIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041 (1470)
T ss_pred cccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEE
Confidence 99999999999999999888776666677778899999999999999999999888899999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCC
Q 000556 1003 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPG 1082 (1426)
Q Consensus 1003 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~ 1082 (1426)
||||||+|||+.++..+++.|++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|
T Consensus 1042 ~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g 1121 (1470)
T PLN03140 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPG 1121 (1470)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCC
Confidence 99999999999999999999999998899999999999988899999999999889999999999988999999999988
Q ss_pred cccCCCCCCccceEEEeccccchhhcccCHHHHHHhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCCHHHHHHHHHHH
Q 000556 1083 VEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACLWK 1162 (1426)
Q Consensus 1083 ~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R 1162 (1426)
+++||+++||||||+|+++.+.+...+.||++.|++|++++++++.+++++.+.++.++..++++|++|+|+|++.|+||
T Consensus 1122 ~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R 1201 (1470)
T PLN03140 1122 VPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWK 1201 (1470)
T ss_pred CCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHH
Confidence 88899999999999999987766566679999999999999998888888777666666666788999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhh
Q 000556 1163 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREK 1242 (1426)
Q Consensus 1163 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~rE~ 1242 (1426)
+++++||||.|+.+|+++++++||++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||
T Consensus 1202 ~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr 1281 (1470)
T PLN03140 1202 QWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRER 1281 (1470)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998777789999999999999999999999999999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000556 1243 AAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIV 1322 (1426)
Q Consensus 1243 ~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1322 (1426)
++|||++++|++|++++|+||.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+++
T Consensus 1282 ~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~ 1361 (1470)
T PLN03140 1282 AAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIF 1361 (1470)
T ss_pred hcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCcccccC-C----CCcHHHHHHhhcCCccCchh
Q 000556 1323 STLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME-N----GETVKHFLRDYFGFKHDFLG 1397 (1426)
Q Consensus 1323 ~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-~----g~~~~~~~~~~~g~~~~~~~ 1397 (1426)
+++++++|++||||++|+++||+||+|+||+||++|+++|+++|||+|.+..|+ + ++++++|++++|||+++++|
T Consensus 1362 ~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 1441 (1470)
T PLN03140 1362 AAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMG 1441 (1470)
T ss_pred HHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCccccc
Confidence 999999999999999999999999999999999999999999999999887653 2 36899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000556 1398 LVAGVLTCFVALFGFVFALGIKQLNFQRR 1426 (1426)
Q Consensus 1398 ~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1426 (1426)
++++++++|+++|++++++++|++|||||
T Consensus 1442 ~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1442 PVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-185 Score=1857.58 Aligned_cols=1272 Identities=31% Similarity=0.542 Sum_probs=1048.6
Q ss_pred cccHHHHHHHHHHHHhhcCCCCC--ccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeec
Q 000556 93 EVDNEKFLLKLKSRIDRVGIDLP--KVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKD 170 (1426)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~p--~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~ 170 (1426)
+.|++++++.++++.++.+...| +++|+|+||+|++. ..+...+||++|.+.+.+..+...+. ..+++++++||+|
T Consensus 2 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~ 79 (1394)
T TIGR00956 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGV-AADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKP 79 (1394)
T ss_pred CCCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEEE-eccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeC
Confidence 35778888877777777777667 99999999999993 44666789999998887775543321 1234456789999
Q ss_pred ceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCHHHHH
Q 000556 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMTVRETL 247 (1426)
Q Consensus 171 vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1426)
||+.++|||+++|+||||||||||||+|+|+.++.. ..+|+|.+||+++++.. .++.++||+|+|.|++.+||+|||
T Consensus 80 vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l 159 (1394)
T TIGR00956 80 MDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETL 159 (1394)
T ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHH
Confidence 999999999999999999999999999999974321 25999999999875432 245699999999999999999999
Q ss_pred HHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 000556 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1426)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGG 327 (1426)
.|+++++.+..+... ..+. +..+..++.+++.+||++++||.||++.+++||||
T Consensus 160 ~f~~~~~~~~~~~~~---~~~~-----------------------~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGG 213 (1394)
T TIGR00956 160 DFAARCKTPQNRPDG---VSRE-----------------------EYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGG 213 (1394)
T ss_pred HHHHHhCCCCCCCCC---CCHH-----------------------HHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcc
Confidence 999887643211000 0000 00122356789999999999999999999999999
Q ss_pred HhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000556 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1426)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1426)
|||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+|
T Consensus 214 erkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G 293 (1394)
T TIGR00956 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFG 293 (1394)
T ss_pred cchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEEC
Confidence 99999999999999999999999999999999999999999987667899999999999999999999999999999999
Q ss_pred ChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcCCcccc--
Q 000556 408 PRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKS-- 485 (1426)
Q Consensus 408 ~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 485 (1426)
+++++.+||+++||+||++.|+|||+++++++.++ +++...+. ....++++++++|+.++.++++..+++.+.+..
T Consensus 294 ~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~~e~-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 371 (1394)
T TIGR00956 294 PADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPGYEK-KVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSE 371 (1394)
T ss_pred CHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hccccccc-cCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999999987543 22221111 123578999999999987776665544321110
Q ss_pred -------------ccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc
Q 000556 486 -------------KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLT 552 (1426)
Q Consensus 486 -------------~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~ 552 (1426)
...+.....++|..++|+|+++|++|+++.++||+..++.++++.+++|+++|++|++.+.+. .
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~ 448 (1394)
T TIGR00956 372 SDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---S 448 (1394)
T ss_pred hhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---h
Confidence 000112234568899999999999999999999999999999999999999999999776432 3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCC
Q 000556 553 DGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPN 632 (1426)
Q Consensus 553 ~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~ 632 (1426)
+.+.+.|++||++++.++.++.+++.++.+|++|+|||..++|++++|+++++++++|+.++.+++|.+++|||+|+.++
T Consensus 449 ~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~ 528 (1394)
T TIGR00956 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRT 528 (1394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCccc
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccc------------------ccccccchhhhhhcHHHHHHHHHH
Q 000556 633 AGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIV 694 (1426)
Q Consensus 633 ~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~------------------~~ip~~~~W~~~isp~~y~~~al~ 694 (1426)
+++||.|+++++++++++.+++++++++++++.+|+.+ ++||+||+|++|+||+.|++++++
T Consensus 529 ~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~ 608 (1394)
T TIGR00956 529 AGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLM 608 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999999999999887654 789999999999999999999999
Q ss_pred HHHhcCCcccccC--C----------------------CCccchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHH
Q 000556 695 ANEFLGYSWKKFT--P----------------------NSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFT 750 (1426)
Q Consensus 695 ~nef~~~~~~~~~--~----------------------~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~ 750 (1426)
+|||.+..+.|.. | +.....|.++|.. ++.....|+|.+++++++++++|.++.+
T Consensus 609 ~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~ 687 (1394)
T TIGR00956 609 VNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYI 687 (1394)
T ss_pred HhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999988741 1 1123578899984 3333466899999999999999999999
Q ss_pred HHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCCCCccccCCCceeE
Q 000556 751 MAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLT 830 (1426)
Q Consensus 751 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 830 (1426)
++++|.++.......+..+............ +......+.++...... .. ...+.+... .............++
T Consensus 688 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~e~~~~~~~-~~--~~~~~~~~~-~~~~~~~~~~~~~l~ 761 (1394)
T TIGR00956 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGE--TSASNKNDIEAGEVLGS-TD--LTDESDDVN-DEKDMEKESGEDIFH 761 (1394)
T ss_pred HHHHhccccCCCCceEeeccccccchhhccc--ccccccccccccccCCC-Cc--ccccccccc-ccccccccCCCceEE
Confidence 9999988655443332211100000000000 00000000000000000 00 000000000 000000001123579
Q ss_pred EeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcCccCCc
Q 000556 831 FDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQ 909 (1426)
Q Consensus 831 ~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~ 909 (1426)
|+|++|.++.+ .+++.+|+|||++++|||++||||||||||||||++|+|+.+++ ..+|+|.+||.+...
T Consensus 762 ~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~ 832 (1394)
T TIGR00956 762 WRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS 832 (1394)
T ss_pred EEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh
Confidence 99999988532 12457999999999999999999999999999999999997644 456999999998753
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000556 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 989 (1426)
Q Consensus 910 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 989 (1426)
.+++.+|||+|+|.+++.+||+|+|.|++.+|.|.+.+.++++++++++++.++|.+++|+.+|.++ .+|||||||||
T Consensus 833 -~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-~~LSgGqrqRl 910 (1394)
T TIGR00956 833 -SFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRL 910 (1394)
T ss_pred -hhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-CCCCHHHhhHH
Confidence 4677899999999999999999999999999877666677777889999999999999999998764 38999999999
Q ss_pred HHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCc
Q 000556 990 TIAVELVANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1426)
Q Consensus 990 ~iA~~L~~~p~-iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~ 1068 (1426)
+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.++
T Consensus 911 ~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~ 990 (1394)
T TIGR00956 911 TIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGE 990 (1394)
T ss_pred HHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCccc
Confidence 99999999997 99999999999999999999999999888999999999999777899999999998889999999998
Q ss_pred chhHHHHHHHhCCCcccCCCCCCccceEEEeccccchhhcccCHHHHHHhcHHHHHHHHHHHHhcCCCCCCC---CCCCC
Q 000556 1069 HSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNKALIEELSKPTPGSK---DLYFP 1145 (1426)
Q Consensus 1069 ~~~~~~~yf~~~~~~~~~~~~~npa~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~ 1145 (1426)
+++++++||+++ |.++||+++|||||++|+++.+.+.....||.+.|++|+++++..+.++++..+..... +....
T Consensus 991 ~~~~~~~yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1069 (1394)
T TIGR00956 991 NSHTIINYFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDAL 1069 (1394)
T ss_pred ccchHHHHHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccc
Confidence 889999999986 55679999999999999998755444456899999999998887766655543322111 11122
Q ss_pred CccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhh
Q 000556 1146 TQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCS 1225 (1426)
Q Consensus 1146 ~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~ 1225 (1426)
++|+.|+|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .
T Consensus 1070 ~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~ 1145 (1394)
T TIGR00956 1070 SKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-Q 1145 (1394)
T ss_pred cccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 4789999999999999999999999999999999999999999999999986 47899999999999988877763 4
Q ss_pred hcchhhhhhhhHH-HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhH-------HHHHHHHHHH
Q 000556 1226 SVQPVVSVERTVF-YREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEK-------FSWYFFFMYI 1297 (1426)
Q Consensus 1226 ~v~~~~~~er~v~-~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~ 1297 (1426)
+++|.+..||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.. |++|++++++
T Consensus 1146 ~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~ 1225 (1394)
T TIGR00956 1146 QYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTM 1225 (1394)
T ss_pred HhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHH
Confidence 5667788888886 9999999999999999999999999999999999999999999988876 9999999999
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCcccccC-
Q 000556 1298 TLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME- 1376 (1426)
Q Consensus 1298 ~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~- 1376 (1426)
+.++++++|+++++++||.++|+.+++++++++++||||++|+++||.||+|+||+||++|+++|++.|||+|.+..|.
T Consensus 1226 ~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~ 1305 (1394)
T TIGR00956 1226 FFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKV 1305 (1394)
T ss_pred HHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987773
Q ss_pred ---------CCCcHHHHH-------------------------------HhhcCCccCchhhHHHHHHHHHHHHHHHHHH
Q 000556 1377 ---------NGETVKHFL-------------------------------RDYFGFKHDFLGLVAGVLTCFVALFGFVFAL 1416 (1426)
Q Consensus 1377 ---------~g~~~~~~~-------------------------------~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~ 1416 (1426)
+|+||++|+ ...+|+++++.|+|++++++|++++ +++++
T Consensus 1306 ~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~ 1384 (1394)
T TIGR00956 1306 KELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATV 1384 (1394)
T ss_pred cccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHH
Confidence 245665442 2356889999999999999999988 77778
Q ss_pred HHHhh
Q 000556 1417 GIKQL 1421 (1426)
Q Consensus 1417 ~l~~~ 1421 (1426)
++.+.
T Consensus 1385 ~l~~~ 1389 (1394)
T TIGR00956 1385 FFYWL 1389 (1394)
T ss_pred hhheE
Confidence 87765
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-95 Score=907.67 Aligned_cols=574 Identities=31% Similarity=0.561 Sum_probs=504.4
Q ss_pred CceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcC
Q 000556 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISG 904 (1426)
Q Consensus 826 ~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g 904 (1426)
+..+.|+|+++..+.+.. ..+++|+||||+++|||++||||||||||||||++|+||..++ ..+|+|++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG 94 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNG 94 (613)
T ss_pred cceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECC
Confidence 457899999998865421 3468999999999999999999999999999999999998764 7899999999
Q ss_pred ccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 905 YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 905 ~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
++.....+++.+|||.|+|.++|++||+|+|.|+|.+|+|...+.++++++|+++++.+||.+++|+++|.++.+|+|||
T Consensus 95 ~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGG 174 (613)
T KOG0061|consen 95 RPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGG 174 (613)
T ss_pred ccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccc
Confidence 88888889999999999999999999999999999999999889999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|||||+||.+|++||+||||||||||||+.++..++++|+++|++|||||||+|||+.+++++||++++|.+ |+++|+|
T Consensus 175 ErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~G 253 (613)
T KOG0061|consen 175 ERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYSG 253 (613)
T ss_pred hhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999996 6999999
Q ss_pred CCCcchhHHHHHHHhCCCcccCCCCCCccceEEEecccc-chhhcccCHHHHHHhcH------HHHHHHH-HHHHhcCCC
Q 000556 1065 PLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASS-QEVALGVDFNDIFRCSE------LYRRNKA-LIEELSKPT 1136 (1426)
Q Consensus 1065 ~~~~~~~~~~~yf~~~~~~~~~~~~~npa~~~l~v~~~~-~~~~~~~~~~~~~~~s~------~~~~~~~-~~~~~~~~~ 1136 (1426)
+. +++.+||+++| . +||+++|||||++|+.+.. .... -.+..+.++... ...+... ..+.+..
T Consensus 254 ~~----~~~~~ff~~~G-~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 324 (613)
T KOG0061|consen 254 SP----RELLEFFSSLG-F-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLST-- 324 (613)
T ss_pred CH----HHHHHHHHhCC-C-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhccc--
Confidence 97 68999999985 3 5999999999999998742 1000 001111111110 0111100 0011111
Q ss_pred CCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHH
Q 000556 1137 PGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAI 1216 (1426)
Q Consensus 1137 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~ 1216 (1426)
.+. .+.....+||.|++.+++|.+++.+|||.+...|+++.+++|+++|++||+++++ ..+++++.|++|+.+
T Consensus 325 --~~~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~---~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 325 --SKK--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND---AKGIQNRLGLFFFIL 397 (613)
T ss_pred --ccc--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc---hHHHHHHHHHHHHHH
Confidence 111 1111278999999999999999999999999999999999999999999999763 566779999999999
Q ss_pred HHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHH
Q 000556 1217 IFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMY 1296 (1426)
Q Consensus 1217 ~~~~~~~~~~v~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1296 (1426)
.++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99988888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCcccccC
Q 000556 1297 ITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME 1376 (1426)
Q Consensus 1297 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1376 (1426)
+..+.+.++|++++++.||...|..+++++...+++|+||+++.++||.||+|++|+|+++|++||++.|||++....|.
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~ 557 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCF 557 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997333332
Q ss_pred -C-----CCcHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 000556 1377 -N-----GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQR 1425 (1426)
Q Consensus 1377 -~-----g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1425 (1426)
. ..+..+++. .++++.++.|.++.++++|.++|++++|+++++....+
T Consensus 558 ~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 558 LSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred cCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1 235566665 58999999999999999999999999999999765443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-94 Score=914.53 Aligned_cols=564 Identities=29% Similarity=0.497 Sum_probs=500.3
Q ss_pred ceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000556 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1426)
Q Consensus 853 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 931 (1426)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999987643 3589999999987655677889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000556 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~-~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsg 1010 (1426)
+|||.|++.++.+.....++++++++++++.+||.+++|+.+|.++ .++||||||||++||+||+++|++|+|||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999999988777777788889999999999999999999764 678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCC
Q 000556 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGY 1090 (1426)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~ 1090 (1426)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|++ |+++|.|+. +++.+||++++ .+||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~-G~~v~~G~~----~~~~~~f~~~g--~~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE-GRVAYLGSP----DQAVPFFSDLG--HPCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeC-CeEEEECCH----HHHHHHHHHcC--CCCCCCC
Confidence 9999999999999999988999999999999889999999999984 899999996 67899999985 3699999
Q ss_pred CccceEEEeccccchhh-----cccCHHHHHHhcHHHHHHHHHHHHhcCCCCC---CCCCCCCCccCCCHHHHHHHHHHH
Q 000556 1091 NPATWMLEVTASSQEVA-----LGVDFNDIFRCSELYRRNKALIEELSKPTPG---SKDLYFPTQYSQSAFTQFMACLWK 1162 (1426)
Q Consensus 1091 npa~~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~Q~~~l~~R 1162 (1426)
|||||++|+++...+.+ ...++.+.|++|+.+++..+.+.....+.++ .......++|..++++|++.|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 99999999987543221 1134566777777666554443322111111 111112346789999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhh
Q 000556 1163 QHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREK 1242 (1426)
Q Consensus 1163 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~rE~ 1242 (1426)
+++++||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.++..+.+.++.||++|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999975 467899999999999999999888888899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000556 1243 AAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIV 1322 (1426)
Q Consensus 1243 ~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1322 (1426)
.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|..+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCccc-ccCCC---C---cHHHHHHhhcCCccCc
Q 000556 1323 STLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVED-QMENG---E---TVKHFLRDYFGFKHDF 1395 (1426)
Q Consensus 1323 ~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~g---~---~~~~~~~~~~g~~~~~ 1395 (1426)
+++++.++++|+||+++.++||+||+|++|+||++|++++++.|||++.+. +|.++ . ..++++.+.||++.++
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~~ 586 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD 586 (617)
T ss_pred HHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhcCCCccc
Confidence 999999999999999999999999999999999999999999999998775 55421 1 1146666789999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 000556 1396 LGLVAGVLTCFVALFGFVFALGIKQLNFQRR 1426 (1426)
Q Consensus 1396 ~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1426 (1426)
.|.+++++++|+++|+++++++||+-...+|
T Consensus 587 ~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 587 LYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999998766665
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-94 Score=909.58 Aligned_cols=580 Identities=24% Similarity=0.400 Sum_probs=486.7
Q ss_pred CCceeEEeceeeEEecchhh----------------hhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhc
Q 000556 825 EPHSLTFDEVVYSVDMPQEM----------------KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~ 888 (1426)
.+.++.|.|++|++...... +.....++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 35789999999998654210 00011234567999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc
Q 000556 889 GRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968 (1426)
Q Consensus 889 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 968 (1426)
|+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+...+.++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876544689999999886533 345689999999999999999999999888766555666677789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhc
Q 000556 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAF 1048 (1426)
Q Consensus 969 ~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~f 1048 (1426)
.|+.+|....++||||||||++||++|+++|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999997789999
Q ss_pred ceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceEEEeccccchhh------c---ccCHHHHHHhc
Q 000556 1049 DELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQEVA------L---GVDFNDIFRCS 1119 (1426)
Q Consensus 1049 D~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~npa~~~l~v~~~~~~~~------~---~~~~~~~~~~s 1119 (1426)
|++++|++ |+++|.|+. +++++||++++ .+||+++|||||++|+++...+.. . .....+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~G--~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESVG--FSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHCC--CCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999996 68999999995 369999999999999987532100 0 01122344321
Q ss_pred HHHHHHHHHHHH--hcC-CCC-----CCCCCC-CCCccCCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhH
Q 000556 1120 ELYRRNKALIEE--LSK-PTP-----GSKDLY-FPTQYSQSAFTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGS 1190 (1426)
Q Consensus 1120 ~~~~~~~~~~~~--~~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1190 (1426)
..++..+.++. ... +.. ..+... ..+.+..+||+|+.+|++|++++ ||++.+..+|+++++++|+++|+
T Consensus 348 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 -LAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred -ccHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 000 000 001100 11235678999999999999998 99999999999999999999999
Q ss_pred hhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 000556 1191 LFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVV 1270 (1426)
Q Consensus 1191 ~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~ 1270 (1426)
+||+++ ..+++++.|++|+++++.++.+++.+++.++.||+||+|||++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999984 467999999999999998888888888999999999999999999999999999999999999999999
Q ss_pred hhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhh
Q 000556 1271 YCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWY 1350 (1426)
Q Consensus 1271 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~ 1350 (1426)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hccCHHHHHHHHHHHHHhCCccc-----ccCC-----CCcHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 000556 1351 YWANPVAWTLYGLIASQFGDVED-----QMEN-----GETVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQ 1420 (1426)
Q Consensus 1351 ~~isp~~y~~~~l~~~~~~~~~~-----~~~~-----g~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1420 (1426)
+|+||++|++++++.|||++.+. .|+. +..| .++. ..++++...|.++++|++|+++|++++|++|++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987542 4531 1112 2332 234455678999999999999999999999998
Q ss_pred hcc
Q 000556 1421 LNF 1423 (1426)
Q Consensus 1421 ~~~ 1423 (1426)
+||
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 876
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-91 Score=946.56 Aligned_cols=588 Identities=23% Similarity=0.381 Sum_probs=508.4
Q ss_pred CCceeEEeceeeEEecchh-------------hh-h-----cccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHh
Q 000556 825 EPHSLTFDEVVYSVDMPQE-------------MK-L-----QGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMD 885 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~-------------~~-~-----~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~ 885 (1426)
+...+.|+|++........ .. . .+....++.+|+|||+.++|||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 3567899999876622110 00 0 012234567999999999999999999999999999999
Q ss_pred hhcCCCCC--ceEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHH-HH
Q 000556 886 VLSGRKTG--GYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETRKM-FI 956 (1426)
Q Consensus 886 ~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~----~~~~~~~~~-~v 956 (1426)
+|+|+..+ .+.+|+|.+||.+..+ ..+++.++||+|+|.|+|.+||+|++.|++.++.|. ..+.+++.+ .+
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 99998632 2468999999987643 234567999999999999999999999999887653 233444333 35
Q ss_pred HHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEE
Q 000556 957 EEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVC 1035 (1426)
Q Consensus 957 ~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~ 1035 (1426)
+++++.+||.+++|+.+|++.+++|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7799999999999999999888999999999999999999999999999999999999999999999999875 999999
Q ss_pred EecCCCHHHHhhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCCCccceEEEeccccch-------h--
Q 000556 1036 TIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGYNPATWMLEVTASSQE-------V-- 1106 (1426)
Q Consensus 1036 ~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~npa~~~l~v~~~~~~-------~-- 1106 (1426)
++|||+.++++.||++++|++ |+++|+|+. +++++||++++ . +||+++|||||++|+++++.+ .
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~lG-~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~ 338 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKMG-F-KCPDRQTTADFLTSLTSPAERQIKPGYEKKV 338 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHcC-C-CCCCCCChHHHHHhccChhhhhccccccccC
Confidence 999998889999999999986 799999986 68999999995 3 699999999999999875421 1
Q ss_pred -hcccCHHHHHHhcHHHHHHHHHHHHhcCCC---------------CCCCCCCCCCccCCCHHHHHHHHHHHHHHHHhcC
Q 000556 1107 -ALGVDFNDIFRCSELYRRNKALIEELSKPT---------------PGSKDLYFPTQYSQSAFTQFMACLWKQHWSYWRN 1170 (1426)
Q Consensus 1107 -~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~ 1170 (1426)
....+|++.|++|+.+++..+.++...... ..++.....+.|..|+|+|+++|++|+++.+|||
T Consensus 339 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd 418 (1394)
T TIGR00956 339 PRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGN 418 (1394)
T ss_pred CCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 123579999999998887766554321110 0011122334688999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHHHhhhcCCCCChH
Q 000556 1171 PQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVFYREKAAGMYSGL 1250 (1426)
Q Consensus 1171 ~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~~rE~~~~~Y~~~ 1250 (1426)
|.++.+|+++++++|+++|++||++++ ++++++++.|++|+++++.++.++..+ +.+..||+||+|||.+++|+++
T Consensus 419 ~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ 494 (1394)
T TIGR00956 419 PSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAILFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPS 494 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCcceeeeccccccCHH
Confidence 999999999999999999999999986 467899999999999999999887665 4456799999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000556 1251 PWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAIVSTLFYGIW 1330 (1426)
Q Consensus 1251 ~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~ 1330 (1426)
+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++|+++++++||..+|+.++++++.++
T Consensus 495 ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~ 574 (1394)
T TIGR00956 495 ADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLAL 574 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCcccccC-------------------------CC---CcHH
Q 000556 1331 YLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME-------------------------NG---ETVK 1382 (1426)
Q Consensus 1331 ~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-------------------------~g---~~~~ 1382 (1426)
++|+||++|+++||+||+|++|+||++|++++++.|||++.+.+|. +| .++.
T Consensus 575 ~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~ 654 (1394)
T TIGR00956 575 SIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGD 654 (1394)
T ss_pred HHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHH
Confidence 9999999999999999999999999999999999999998777662 01 1567
Q ss_pred HHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000556 1383 HFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNF 1423 (1426)
Q Consensus 1383 ~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1423 (1426)
+|+...||++++++|+|++|+++|+++|++++++++++++.
T Consensus 655 ~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 655 DYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred HHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99988899999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-90 Score=928.23 Aligned_cols=590 Identities=23% Similarity=0.389 Sum_probs=499.8
Q ss_pred CCceeEEeceeeEEecchh-------h----------h-hcc---cccCceEEeeeeEEEEeCCcEEEEeccCCCchhHH
Q 000556 825 EPHSLTFDEVVYSVDMPQE-------M----------K-LQG---VLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTL 883 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~-------~----------~-~~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTL 883 (1426)
+...+.|+|+++..+.... . . ..+ .+..++.+|+||||.++|||+++|+||||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTL 207 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTL 207 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHH
Confidence 3457899999887662111 0 0 001 12235679999999999999999999999999999
Q ss_pred HhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHH---
Q 000556 884 MDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETR--- 952 (1426)
Q Consensus 884 l~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~-------~~~~~~--- 952 (1426)
|++|+|+.++. ..+|+|.+||.+..+...++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 208 Lk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~ 287 (1470)
T PLN03140 208 LLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAG 287 (1470)
T ss_pred HHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhcc
Confidence 99999986542 4589999999987554446789999999999999999999999988764321 111111
Q ss_pred ---------------------HHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000556 953 ---------------------KMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1426)
Q Consensus 953 ---------------------~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgL 1011 (1426)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|++|||||||+||
T Consensus 288 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGL 367 (1470)
T PLN03140 288 IFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGL 367 (1470)
T ss_pred CCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCc
Confidence 12367899999999999999999888999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcccCCCCC
Q 000556 1012 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVEKIKDGY 1090 (1426)
Q Consensus 1012 D~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~~~~~~~~~ 1090 (1426)
|+.++..+++.|+++++ .|+|||+++|||+.+++++||+|++|++ |+++|+||. +++++||++++ . +||+++
T Consensus 368 Ds~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~lG-f-~cP~~~ 440 (1470)
T PLN03140 368 DSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESCG-F-KCPERK 440 (1470)
T ss_pred cHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHcC-C-CCCCCC
Confidence 99999999999999987 4899999999998899999999999985 899999996 68899999995 3 699999
Q ss_pred CccceEEEeccccch-h-----------hcccCHHHHHHhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCCHHHHHHH
Q 000556 1091 NPATWMLEVTASSQE-V-----------ALGVDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSAFTQFMA 1158 (1426)
Q Consensus 1091 npa~~~l~v~~~~~~-~-----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ 1158 (1426)
|||||++|+++.... . ....+|++.|++|+.+++..+.++.........+.....++|..|++.|++.
T Consensus 441 n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~ 520 (1470)
T PLN03140 441 GTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKA 520 (1470)
T ss_pred ChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHH
Confidence 999999999886432 1 1124689999999888776654432111111111111234689999999999
Q ss_pred HHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhHH
Q 000556 1159 CLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVSVERTVF 1238 (1426)
Q Consensus 1159 l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~~er~v~ 1238 (1426)
|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+...|++|++++++++.++.. ++.+..||+||
T Consensus 521 ~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~vf 599 (1470)
T PLN03140 521 CWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLPVF 599 (1470)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccchh
Confidence 99999999999999999999999999999999999998654444566778999999999888877655 47778899999
Q ss_pred HhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Q 000556 1239 YREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHI 1318 (1426)
Q Consensus 1239 ~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~ 1318 (1426)
+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+..+
T Consensus 600 ~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~ 679 (1470)
T PLN03140 600 YKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMII 679 (1470)
T ss_pred HHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCcccc---cC-CC-CcHHHHHHhhcCCcc
Q 000556 1319 AAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQ---ME-NG-ETVKHFLRDYFGFKH 1393 (1426)
Q Consensus 1319 A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~---~~-~g-~~~~~~~~~~~g~~~ 1393 (1426)
|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|++.|||.+.... |. .. .++.+|+ +.+|+..
T Consensus 680 A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~~~~~G~~~L-~~~g~~~ 758 (1470)
T PLN03140 680 ANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDNSTRLGTAVL-NIFDVFT 758 (1470)
T ss_pred HHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCCCcccHHHHH-HhcCcCc
Confidence 99999999999999999999999999999999999999999999999999765432 21 12 2445555 7789975
Q ss_pred C--chhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000556 1394 D--FLGLVAGVLTCFVALFGFVFALGIKQLNF 1423 (1426)
Q Consensus 1394 ~--~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1423 (1426)
+ +.|+++++|++|+++|++++++++++++.
T Consensus 759 ~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~ 790 (1470)
T PLN03140 759 DKNWYWIGVGALLGFTILFNVLFTLALTYLNP 790 (1470)
T ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 5 56999999999999999999999999873
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-84 Score=813.34 Aligned_cols=563 Identities=26% Similarity=0.475 Sum_probs=502.6
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 930 (1426)
.+..+|+|+||.++||+++.++||+||||||||++|+|..+.. ...|+|.+||++.+....++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3457999999999999999999999999999999999975432 235799999998776545788999999999999999
Q ss_pred HHHHHHHHHHhcCCCC----CCHHHHH-HHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000556 931 VYESLLYSAWLRLPPE----VDSETRK-MFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005 (1426)
Q Consensus 931 v~e~l~f~a~lr~~~~----~~~~~~~-~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLD 1005 (1426)
|+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|++||+...+|+||||||||+||.+++.+|+++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2577999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCcchhHHHHHHHhCCCcc
Q 000556 1006 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYFEAIPGVE 1084 (1426)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~~~~~~~yf~~~~~~~ 1084 (1426)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.+++++||+|++|.+ |++||+||. .++++||++++ -
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~G--f 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDMG--F 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhcC--c
Confidence 999999999999999999999875 899999999999999999999999996 799999998 58899999986 3
Q ss_pred cCCCCCCccceEEEeccccchh-----------hcc-cCHHHHHHhcHHHHHHHHHHHHhcCCCCCCCCCCCCCccCCCH
Q 000556 1085 KIKDGYNPATWMLEVTASSQEV-----------ALG-VDFNDIFRCSELYRRNKALIEELSKPTPGSKDLYFPTQYSQSA 1152 (1426)
Q Consensus 1085 ~~~~~~npa~~~l~v~~~~~~~-----------~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1152 (1426)
.||+..++|||+.++++...+. ... .+|++.|.+|+.+++.+..++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 6999999999999999832211 112 5799999999999887755433221122233333456899999
Q ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhHhhccCCCCCCChhhHHHHHhHHHHHHHHHHHHhhhhcchhhh
Q 000556 1153 FTQFMACLWKQHWSYWRNPQYTAVRFFFTAFIAVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIFLGLQYCSSVQPVVS 1232 (1426)
Q Consensus 1153 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~v~~~~~ 1232 (1426)
|.|++.|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..+++++++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999972 5677899999999999999999888776 5566
Q ss_pred hhhhHHHhhhcCCCCChHHHHHHHHHHHHHHHHHHHHhhhhheecccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000556 1233 VERTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAMMGYDWTAEKFSWYFFFMYITLLLFTFYGMLTVAI 1312 (1426)
Q Consensus 1233 ~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1312 (1426)
+.|+||+|||...+|++++|.++..+.++|+.++.+++|.+|+||++||.+++++||.|+++++++..++.+++++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcccccCCCCccchhhhhhccCHHHHHHHHHHHHHhCCcccccC-C--------------
Q 000556 1313 TPNHHIAAIVSTLFYGIWYLFCGFVIPRPRIPVWWRWYYWANPVAWTLYGLIASQFGDVEDQME-N-------------- 1377 (1426)
Q Consensus 1313 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~-~-------------- 1377 (1426)
+++..+|+.++++.+....+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|+ .
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999888774 1
Q ss_pred -------CC---cHHHHHHhhcCCccCchhhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 000556 1378 -------GE---TVKHFLRDYFGFKHDFLGLVAGVLTCFVALFGFVFALGIKQLNFQ 1424 (1426)
Q Consensus 1378 -------g~---~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1424 (1426)
|. .+.+|++..|+|++.|.|++++|++||.++|.+++.+++.|+|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 11 357888888999999999999999999999999999999999863
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-77 Score=747.24 Aligned_cols=567 Identities=30% Similarity=0.498 Sum_probs=472.7
Q ss_pred CCccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeecceEEEeCCeEEEEEcCCCCcHHH
Q 000556 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT 193 (1426)
Q Consensus 114 ~p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKST 193 (1426)
...++++|+|+++++... .+ ..+++|+||||+++|||++|||||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~----------------------------~~-~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK----------------------------SK-KTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC----------------------------CC-ccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 457889999999998642 11 4578999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhc
Q 000556 194 LLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273 (1426)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 273 (1426)
||++|+|+.+...+++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+++++.+.+ +
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~------- 137 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------L------- 137 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------C-------
Confidence 99999999987667899999999887776678899999999999999999999999999875432 1
Q ss_pred CCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCC
Q 000556 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353 (1426)
Q Consensus 274 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1426)
..++.+.+++++++.|||.+|+||+||+...||+||||||||+||..|+.+|+|||+||||||
T Consensus 138 -----------------~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 138 -----------------SKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -----------------CHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 112345679999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000556 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1426)
Q Consensus 354 LDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1426)
||+.++.++++.|+++|+. ++|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999986 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHH
Q 000556 434 QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISREL 513 (1426)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 513 (1426)
.++.+..++.+.... ........+.++......+.......... + ..........++|.|+..+.+|.+
T Consensus 280 l~l~s~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~s~~~q~~~L~~R~~ 348 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEE------AVRIAKLINKFSQTDNLKKTLEALEKSLS----T-SKKVEIGTSPSWWTQFKILLKRSL 348 (613)
T ss_pred HHHHccCCCchhHHh------HHHHHHHhhhccccchhhhhHHHHhhhcc----c-ccccccccCCcHHHHHHHHHHHHh
Confidence 998874311000000 00000011111100000000000000000 0 000011116789999999999999
Q ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHHHHHHHHHHHHHHHH-HHHHHhccchhhhhhccC
Q 000556 514 LLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLA-EISMTIAKLPVFYKQRDF 592 (1426)
Q Consensus 514 l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~-~~~~~~~~~~vf~k~r~~ 592 (1426)
..+.|++.+...|+.+.+.+++++|++|++.+.... ......|++|+.+.+..+..+. .++.+..++++|.||+..
T Consensus 349 ~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~ 425 (613)
T KOG0061|consen 349 KNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSS 425 (613)
T ss_pred HHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhc
Confidence 999999999999999999999999999998754433 2236678889988888776666 588999999999999999
Q ss_pred CCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhccc--
Q 000556 593 RFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTF-- 670 (1426)
Q Consensus 593 ~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~-- 670 (1426)
+.|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.+.++.++..+++.++..+++++.++...|.++
T Consensus 426 ~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~ 505 (613)
T KOG0061|consen 426 GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGP 505 (613)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987766554
Q ss_pred ----------------ccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCC--CCccchhHHHhhccCccccchHHH
Q 000556 671 ----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTP--NSYESIGVQVLKSRGFFAHAYWYW 732 (1426)
Q Consensus 671 ----------------~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~--~~~~~~g~~~L~~~~~~~~~~~~w 732 (1426)
++||.||+|+.|+|+.+|+++++++|||.+....|... ..+...+.++++..++...+ .|
T Consensus 506 ~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~ 583 (613)
T KOG0061|consen 506 VLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS--FW 583 (613)
T ss_pred HHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc--cc
Confidence 68999999999999999999999999999744444332 34567889999988886544 56
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Q 000556 733 LGLGALFGFILLFNLGFTMAITFLN 757 (1426)
Q Consensus 733 ~~~g~l~~~~v~f~~~~~~al~~~~ 757 (1426)
.++.++++++++|.++.++++++..
T Consensus 584 ~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 584 LDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8899999999999999999998763
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-76 Score=742.68 Aligned_cols=593 Identities=21% Similarity=0.328 Sum_probs=454.1
Q ss_pred CCccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeecceEEEeCCeEEEEEcCCCCcHHH
Q 000556 114 LPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTT 193 (1426)
Q Consensus 114 ~p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKST 193 (1426)
.+.++++|+|+++.+.......+... +...+..--. .....++..++++|+|+|++++|||+++|+|||||||||
T Consensus 35 ~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~-~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKST 109 (659)
T PLN03211 35 CYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPK-ISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKST 109 (659)
T ss_pred CCceEEEEEeEEEEEccCCCcccccc----cccccccccc-cccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHH
Confidence 45899999999999764310111110 0111000000 000111223567999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhc
Q 000556 194 LLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273 (1426)
Q Consensus 194 LL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 273 (1426)
||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++..... .
T Consensus 110 LL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~------ 174 (659)
T PLN03211 110 LLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------T------ 174 (659)
T ss_pred HHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------C------
Confidence 999999998764 3589999999987532 235689999999999999999999998765421100 0
Q ss_pred CCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCC
Q 000556 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTG 353 (1426)
Q Consensus 274 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsg 353 (1426)
..+.+.+++++++.+||++++||.||++..++|||||||||+||++|+.+|++++|||||+|
T Consensus 175 ------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 175 ------------------KQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred ------------------HHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 01122456889999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000556 354 LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1426)
Q Consensus 354 LDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1426)
||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++||+||++.|||||+
T Consensus 237 LD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ 315 (659)
T PLN03211 237 LDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFL 315 (659)
T ss_pred cCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Confidence 999999999999999876 5789999888888889999999999999999999999999999999999999999999999
Q ss_pred HhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC---Cccccc-----ccc-ccccCccccCcHHHH
Q 000556 434 QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT---PFDKSK-----SHR-AALTTEVYGAGKREL 504 (1426)
Q Consensus 434 ~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~-----~~~-~~~~~~~~~~~~~~~ 504 (1426)
.++++...+.......+.+ ...+.+.+.|++.. ..+..+.... +....+ ..+ .......+..++|.|
T Consensus 316 ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 391 (659)
T PLN03211 316 LDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQ 391 (659)
T ss_pred HHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHH
Confidence 9998764321100000111 11233334443211 1111111100 000000 000 000112355789999
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHHHHHHHHHHHH-HHHHHHHHHhccc
Q 000556 505 LKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMF-NGLAEISMTIAKL 583 (1426)
Q Consensus 505 ~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~-~~~~~~~~~~~~~ 583 (1426)
+..+++|.++. +|+..+...|+++.+++|+++|++|++.+ ..+.+...|++||++++.++ ..+..++.+..+|
T Consensus 392 ~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er 465 (659)
T PLN03211 392 FSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQER 465 (659)
T ss_pred HHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888 78887778999999999999999999753 23456778999999877555 5567888888999
Q ss_pred hhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 000556 584 PVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRS 663 (1426)
Q Consensus 584 ~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s 663 (1426)
++|+|||..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++++||.|+++++++.+++.+++.++++++++
T Consensus 466 ~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~ 545 (659)
T PLN03211 466 AIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMD 545 (659)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhccc----------------ccccccchhhhhhcHHHHHHHHHHHHHhcCCc-----ccccCCCCccchhHHHhhcc
Q 000556 664 MVVANTF----------------EDIKKWWKWAYWCSPMSYAQNAIVANEFLGYS-----WKKFTPNSYESIGVQVLKSR 722 (1426)
Q Consensus 664 ~~~a~~~----------------~~ip~~~~W~~~isp~~y~~~al~~nef~~~~-----~~~~~~~~~~~~g~~~L~~~ 722 (1426)
+.+|+.+ .+||+||+|++|+||++|+++++++|||.+.+ ..|..+......+..++...
T Consensus 546 ~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~~ 625 (659)
T PLN03211 546 AKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEED 625 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchhh
Confidence 8887654 68999999999999999999999999997644 23422211111111222222
Q ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000556 723 GFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLN 757 (1426)
Q Consensus 723 ~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~ 757 (1426)
.+. ....|.++++|++++++|.++.+++|++.+
T Consensus 626 ~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 626 VAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred hhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222 234678899999999999999999997653
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-76 Score=748.28 Aligned_cols=551 Identities=27% Similarity=0.411 Sum_probs=461.4
Q ss_pred cccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCC
Q 000556 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 241 (1426)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||.+++....++.++||+|+|.+++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 44678999999999999999999999999999999999998875456899999999876544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc-
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM- 320 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~- 320 (1426)
||+|||.|+++++.+.... .++...+++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~~-------------------------------~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVT-------------------------------KKEKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCC-------------------------------HHHHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 9999999998776422100 01123457889999999999999999864
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
.++|||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||+|++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999876 4789999999999999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
|+++|+|+++++.+||+++|++||++.|++||+.++++....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998875432110 0 112234566666665554444333221
Q ss_pred Ccccc---ccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchh
Q 000556 481 PFDKS---KSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557 (1426)
Q Consensus 481 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~ 557 (1426)
..... ...........|..+++.|+..+++|.++..+||+..+..++++.+++++++|++|++.+.+. .+....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 11100 000011123457788999999999999999999999999999999999999999999765432 334556
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHH
Q 000556 558 AGALFFATAMVMFNGL-AEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRF 636 (1426)
Q Consensus 558 ~g~lf~~l~~~~~~~~-~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~f 636 (1426)
.|++|+.++...|.++ ..++.+..++++|+||+..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7899999888888765 456677789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhhccc------------------ccccccchhhhhhcHHHHHHHHHHHHHh
Q 000556 637 FKQYLLFLAVNQMASALFRLIAATGRSMVVANTF------------------EDIKKWWKWAYWCSPMSYAQNAIVANEF 698 (1426)
Q Consensus 637 f~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~------------------~~ip~~~~W~~~isp~~y~~~al~~nef 698 (1426)
|.++++++++..++.+++++++++++++.+|..+ ++||+||+|++|+||++|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998877554 7899999999999999999999999999
Q ss_pred cCCcc-cccCCC---CccchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000556 699 LGYSW-KKFTPN---SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFL 756 (1426)
Q Consensus 699 ~~~~~-~~~~~~---~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~ 756 (1426)
.+..+ .|...+ .+...|.++|+.+|+... +.|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98776 443211 133468999999988654 458899999999999999999999874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-74 Score=721.38 Aligned_cols=777 Identities=20% Similarity=0.248 Sum_probs=420.4
Q ss_pred CCCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCC
Q 000556 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD 235 (1426)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 235 (1426)
|+|+ +..||+|+|+.|++|+.++|+|||||||||++++|.+.++|+ +|+|.++|.++.++.. +.++|.|+|+|
T Consensus 361 PsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 361 PSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred CCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeech
Confidence 5554 578999999999999999999999999999999999999998 9999999999987765 46899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1426)
.+|. .||+|||.|+..- ...++..+++. .++..--+..|++..||.
T Consensus 437 vlF~-~tI~eNI~~G~~d-------------------------at~~~i~~a~k--------~ana~~fi~~lp~g~~T~ 482 (1228)
T KOG0055|consen 437 VLFA-TTIRENIRYGKPD-------------------------ATREEIEEAAK--------AANAHDFILKLPDGYDTL 482 (1228)
T ss_pred hhhc-ccHHHHHhcCCCc-------------------------ccHHHHHHHHH--------HccHHHHHHhhHHhhccc
Confidence 6664 6999999997421 11111111111 111112244578889999
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
||++++ +|||||||||+|||||+.+|+||+||||||+||+.+...+.+.|++.. .++|+|+ +.|..+.+-+ +|+|
T Consensus 483 vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTiv-VaHRLStIrn-aD~I 557 (1228)
T KOG0055|consen 483 VGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIV-VAHRLSTIRN-ADKI 557 (1228)
T ss_pred ccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEE-Eeeehhhhhc-cCEE
Confidence 999887 499999999999999999999999999999999999999999998864 4677777 4555555555 9999
Q ss_pred EEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH--HhhcCccchhhhhcccCCCCccCCHHHHHHHHHhccc---
Q 000556 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL--QEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHV--- 470 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 470 (1426)
++|++|+|++.|+++|++.. .--.++.+ |+....++. ..+.... .++.....+.+..
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~----------~G~Y~~lv~~Q~~~~~~~~-~~~~~~~-------~~~~~~s~~~s~~~~~ 619 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIAL----------GGIYSSLVRLQELEKAAED-EEEEESL-------KEERSRSLKSSSSSPS 619 (1228)
T ss_pred EEEECCEEEEecCHHHHHhc----------cchHHHHHHHHhhhhhhhc-cccccch-------hhhhhhcccccccccc
Confidence 99999999999999999862 00111221 222221110 0000000 0000000000000
Q ss_pred -chh-hHHhh--cCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHH-------HHHHHHHHHH
Q 000556 471 -GQK-ISDEL--RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQ-------ISSVALAFMT 539 (1426)
Q Consensus 471 -~~~-~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~-------~~~~ali~gt 539 (1426)
... ..... ..+.+.....+ ........+++ |-+...+.++.+.+..++. ..+.+++++.
T Consensus 620 ~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~~s~~--------~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~ 689 (1228)
T KOG0055|consen 620 LSRGSNRSNLLSVKPEGEDPEEP--VSEEDEKVSFW--------RIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQ 689 (1228)
T ss_pred ccCCccccccccccccccccccc--cccccccccHH--------HHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 000 00000 00000000000 00011222333 3344444444444433332 2334444444
Q ss_pred hhhcccCCC-CcccccchhHHHHHHHHHHH----------HHHHHHHHHHHhccchhhhh--hccCCCCChhhH--HHHH
Q 000556 540 LFLRTKMHK-HSLTDGGIYAGALFFATAMV----------MFNGLAEISMTIAKLPVFYK--QRDFRFFPPWAY--AIPS 604 (1426)
Q Consensus 540 ~f~~~~~~~-~~~~~~~~~~g~lf~~l~~~----------~~~~~~~~~~~~~~~~vf~k--~r~~~~y~~~ay--~la~ 604 (1426)
++-...... +........+..+|.++... +|.-..+....-.|...|.+ ..+..||.--.. .+.+
T Consensus 690 ~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~ 769 (1228)
T KOG0055|consen 690 VLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSS 769 (1228)
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHH
Confidence 432211111 11111122244444433322 12222232222223333322 122333322111 1111
Q ss_pred H-HHHhh---------HHHHHHHHHhhhheeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhh-------
Q 000556 605 W-ILKIP---------ISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVA------- 667 (1426)
Q Consensus 605 ~-l~~iP---------~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a------- 667 (1426)
- ..+.| ++.+.-.+..+++-..++|..++.--+......-++........+++.........+
T Consensus 770 RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~i 849 (1228)
T KOG0055|consen 770 RLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKI 849 (1228)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 11111 111110011111101111110000000000011111111111122222211111100
Q ss_pred --cccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhhccCccccchHHHHHHHHHHHHH---
Q 000556 668 --NTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFI--- 742 (1426)
Q Consensus 668 --~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~--- 742 (1426)
..+.+|. .--.++.+.-+.+.|.. .++...-.......|.+++.-+...
T Consensus 850 A~eai~NIr---------TV~al~~e~~~~~~y~~-----------------~l~~p~~~~~~~~~i~gl~f~~sqs~~~ 903 (1228)
T KOG0055|consen 850 AIEAVSNIR---------TVAALCAEEKFMELYKE-----------------ELEKPRKSSFKRGLISGLGFGFSQSLLF 903 (1228)
T ss_pred HHHHHHhHH---------HHHHHhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001100 00111122222222211 0000000000001122222111111
Q ss_pred HHHHHHHHHHHHhccccCCCcceeecccccc----cc-ccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCC
Q 000556 743 LLFNLGFTMAITFLNQLEKPRAVITEESESN----KQ-DNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKK 817 (1426)
Q Consensus 743 v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 817 (1426)
..+.+.++.+......- ....+..... .. ...........++...+...... .-..+++....+....
T Consensus 904 ~~~A~~f~~G~~Li~~g----~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~---iF~i~dr~~~i~~~~~ 976 (1228)
T KOG0055|consen 904 FVYALSFWYGARLISNG----EMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGS---IFEILDRKPTIDPDST 976 (1228)
T ss_pred HHHHHHHHHhHHHHhcC----CcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHH---HHHHhcCCCCCCCCCC
Confidence 11122222222221110 0000000000 00 00000000000000000000000 0000000000011111
Q ss_pred CCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEE
Q 000556 818 RGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT 897 (1426)
Q Consensus 818 ~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~ 897 (1426)
.+...|.....++|+||+++|+..+ ..++|+|+|+++++|+.+||+|||||||||++.+|-+..+ +..
T Consensus 977 ~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd--p~~ 1044 (1228)
T KOG0055|consen 977 SGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD--PDA 1044 (1228)
T ss_pred CCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 2223344456899999999998654 4579999999999999999999999999999999987655 568
Q ss_pred EEEEEcCccCCcc---cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-------CCcc
Q 000556 898 GNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-------ELKP 967 (1426)
Q Consensus 898 G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-------~L~~ 967 (1426)
|.|.|||.++++. ..|+.+|.|.|+|.++. -|++||+.|+. . +++.++ +.++++.. +|.+
T Consensus 1045 G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~e----Ii~Aak~ANaH~FI~sLP~ 1114 (1228)
T KOG0055|consen 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEE----IIEAAKLANAHNFISSLPQ 1114 (1228)
T ss_pred CeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHH----HHHHHHHhhhHHHHhcCcC
Confidence 9999999998763 46788999999999985 69999999971 1 133332 45555543 5667
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhh
Q 000556 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA 1047 (1426)
Q Consensus 968 ~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~ 1047 (1426)
-.||.||..|. +||||||||++||||+++||+||+|||+||.||+++.+.|+++|++.. .|||.|+++|++| ..+.
T Consensus 1115 GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLS--TIqn 1190 (1228)
T KOG0055|consen 1115 GYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLS--TIQN 1190 (1228)
T ss_pred cccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchh--hhhc
Confidence 78999998764 799999999999999999999999999999999999999999999874 5899999999987 5788
Q ss_pred cceEEEEecCcEEEEEcCC
Q 000556 1048 FDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1048 fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+|.|.|+++ |+++..|.-
T Consensus 1191 aD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1191 ADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred CCEEEEEEC-CEEEecccH
Confidence 999999985 899999974
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-73 Score=730.68 Aligned_cols=769 Identities=20% Similarity=0.247 Sum_probs=457.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
.+.|+|||+.|++|+++||+||.||||||||.+|.|+++.. +|+|.++| .++||+|+++ +.+.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pW-I~ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPW-IQNGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccH-hhCCcHH
Confidence 34899999999999999999999999999999999999875 99999999 4899999984 5567999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
|||.|+..+. ..||+.+.+.|.+++|..++|++| .|.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD--------------------------------~TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGD--------------------------------LTEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCC--------------------------------cceecCCcc-CC
Confidence 9999998875 379999999999999999999998 499999988 69
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHH-HHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~-~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
||||||||++|||++++++|++||+|.|++|+++..+|++ +++.+. .++|+|+ ++| .-+..+.+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~IL-VTH-ql~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVIL-VTH-QLQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEE-EeC-chhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999996 786653 3456665 444 4577888999999999999
Q ss_pred EEecChhhHHH---HHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 404 VYQGPRELVLE---FFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 404 v~~G~~~~~~~---~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
+..|+++|+.+ +|+.+ .. +....++.. .....+.......+. +. +.........+. .
T Consensus 721 ~~~Gty~el~~~~~~~~~l-~~------------~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~ 780 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAEL-AH------------EEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK--S 780 (1381)
T ss_pred ecccCHHHHHhcchhHHHH-hh------------ccchhhccc---cccccccccccccch-hh-hhhhhhcccccc--c
Confidence 99999999983 33332 00 000000000 000000000000000 00 000000000000 0
Q ss_pred Cccccc-cccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH-HHHHHhhhcccCCCC---cc--cc
Q 000556 481 PFDKSK-SHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVA-LAFMTLFLRTKMHKH---SL--TD 553 (1426)
Q Consensus 481 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~a-li~gt~f~~~~~~~~---~~--~~ 553 (1426)
...+.. ...........+.-.|...+.. +.....-.....+-+.+..... .+.+..|+..+.+.. .. .+
T Consensus 781 ~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y----~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~ 856 (1381)
T KOG0054|consen 781 KDEKEEEDKLVQEEERETGKVSWSVYKKY----IKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVS 856 (1381)
T ss_pred ccccchhhHHHHHHHHhcCEeeHHHHHHH----HHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCC
Confidence 000000 0000000001111111111111 1110110111111111222222 222333333332221 11 12
Q ss_pred cchhHH----HHHHHHHHHHHHHHHHHH--------------HHh--ccchhhhhhccCCCCChhhHHHHHHHHHhhHHH
Q 000556 554 GGIYAG----ALFFATAMVMFNGLAEIS--------------MTI--AKLPVFYKQRDFRFFPPWAYAIPSWILKIPISF 613 (1426)
Q Consensus 554 ~~~~~g----~lf~~l~~~~~~~~~~~~--------------~~~--~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~ 613 (1426)
...|.+ ..+...+..++.++.... -.+ +....|......+..+.++..+......+|..+
T Consensus 857 ~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~ 936 (1381)
T KOG0054|consen 857 TSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTL 936 (1381)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHH
Confidence 222222 111111111111111110 011 122345666777888889999999999999877
Q ss_pred HHHHHHhhhheeccccCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHhhccchhhcccccccccchh-hhhhc
Q 000556 614 LEVAVWVFLTYYVIGCDPNAGRFFKQYLLFL--------AVNQMASALFRLIAATGRSMVVANTFEDIKKWWKW-AYWCS 684 (1426)
Q Consensus 614 ~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~--------l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W-~~~is 684 (1426)
...+...+.+-..++....+...|....+.+ .....++.-.+.+.+++++++.++..+++.+-... +|--.
T Consensus 937 ~~~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~ 1016 (1381)
T KOG0054|consen 937 EFFLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKE 1016 (1381)
T ss_pred HHHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeecccc
Confidence 6655443333333222222222222222111 12233455567788999999999877665544322 11111
Q ss_pred HHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhhccCccccchHHHH-----HHHHHHHHHHHHHHHHHHHHHhcccc
Q 000556 685 PMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWL-----GLGALFGFILLFNLGFTMAITFLNQL 759 (1426)
Q Consensus 685 p~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~-----~~g~l~~~~v~f~~~~~~al~~~~~~ 759 (1426)
+..-......++......+.....+.|.....+.+...-+........+ .-..++|+.+.|.+..+-.+.+.-.
T Consensus 1017 ~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR- 1095 (1381)
T KOG0054|consen 1017 ERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVR- 1095 (1381)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHH-
Confidence 1111111111111111100000011111111111111000000000000 0012344444444443333333210
Q ss_pred CCCcceeeccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCC-CCccccCCCceeEEeceeeEE
Q 000556 760 EKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKK-RGMILPFEPHSLTFDEVVYSV 838 (1426)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~v~~~~ 838 (1426)
...+.++...+.++...+... ..+.+...+.. ....+| ..+.++|+|++..|
T Consensus 1096 ---------------------~~~elEn~m~SVERv~eY~~~-----~~E~p~~~~~~~pp~~WP-~~G~I~f~~~~~RY 1148 (1381)
T KOG0054|consen 1096 ---------------------QSSELENNMVSVERVLEYTDI-----PSEAPLEIEESRPPPSWP-SKGEIEFEDLSLRY 1148 (1381)
T ss_pred ---------------------HHHHHHhcchhhhHHHHHhcC-----CCCCCCCCcCCCCCCCCC-CCCeEEEEEeEEEe
Confidence 000011111111111000000 00000000000 111222 23479999998777
Q ss_pred ecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc---ccccce
Q 000556 839 DMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARI 915 (1426)
Q Consensus 839 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~ 915 (1426)
.. +...+|||||+.|+|||++||+|++|||||||+++|.+... +.+|+|.|||.++.+ ...|+.
T Consensus 1149 rp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e--~~~G~I~IDgvdI~~igL~dLRsr 1215 (1381)
T KOG0054|consen 1149 RP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE--PAEGEILIDGVDISKIGLHDLRSR 1215 (1381)
T ss_pred CC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC--ccCCeEEEcCeecccccHHHHHhc
Confidence 42 23469999999999999999999999999999999998766 358999999999876 356888
Q ss_pred EEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHH
Q 000556 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG------LPGVSGLSTEQRKRL 989 (1426)
Q Consensus 916 ~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~~LSgGqrqRl 989 (1426)
++.+||+|.++. -|+|.|| |+..+..|+.++++||..+|.+...++.+ .+++.++|.||||.+
T Consensus 1216 lsIIPQdPvLFs-GTvR~NL----------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLl 1284 (1381)
T KOG0054|consen 1216 LSIIPQDPVLFS-GTVRFNL----------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLL 1284 (1381)
T ss_pred CeeeCCCCceec-Ccccccc----------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHH
Confidence 999999999886 4777776 56667778889999999999887765543 245689999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 990 ~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|+||||+++++||+|||+|+++|++|...|+++||+-.+ +||||++.|+.+ ....+|||+||++ |+++.+|.+
T Consensus 1285 CLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~--TVmd~DrVlVld~-G~v~EfdsP 1357 (1381)
T KOG0054|consen 1285 CLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN--TVMDSDRVLVLDA-GRVVEFDSP 1357 (1381)
T ss_pred HHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc--hhhhcCeEEEeeC-CeEeecCCh
Confidence 999999999999999999999999999999999999764 799999999987 3455799999996 799999986
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-67 Score=705.98 Aligned_cols=216 Identities=27% Similarity=0.404 Sum_probs=188.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+..+|+++.++. +++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 1937 ~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 4889999887741 125699999999999999999999999999999999998763 489999999886
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 43 2235679999999999999999999998777653 233444567889999999999988875 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|+|+++ ++..+|||+++|++ |+++..|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999986 68889999999985 79999998
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 2154 ~ 2154 (2272)
T TIGR01257 2154 I 2154 (2272)
T ss_pred H
Confidence 5
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-66 Score=708.29 Aligned_cols=211 Identities=24% Similarity=0.311 Sum_probs=179.5
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+++|+. +...+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 46999999999842 123599999999999999999999999999999999998763 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 976 (1426)
+.+ ..+|+.++||||++.++.. |++|||.+.. +. .++.++++++..++.+.. |+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 765 3567889999999999875 9999996531 11 234588899988886543 5556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999885 4899999999986 4567999999986
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++.+|+.
T Consensus 1448 -G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 -GRVVEFDTP 1456 (1622)
T ss_pred -CEEEEeCCH
Confidence 899999985
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=709.18 Aligned_cols=211 Identities=22% Similarity=0.282 Sum_probs=179.1
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.+||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 46999999999841 124699999999999999999999999999999999998763 58999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 976 (1426)
+.+ ..+|+.++||||++.+++. |++|||.+.. +. .++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EH----NDADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CC----CHHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 765 3567889999999999874 9999996421 12 234588899988886644 5556553
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999875 4899999999985 4567999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 799999975
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-65 Score=608.20 Aligned_cols=474 Identities=27% Similarity=0.342 Sum_probs=364.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-CCceeEEEEcCccCCCCCc-------cceEEEecCCC-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-LKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD- 235 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~-~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1426)
..+++||||++.|||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 56999999999999999999999999999999999999886 4568999999997654433 25799999996
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 000556 236 -NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1426)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1426)
.+-|.+||.+-+.-..+.++... ..+...++.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 46677899888876554443111 12334567889999999987654
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
+++++.|||||||||.||+||+.+|++|++||||++||..++.+|++.|+++.++ .++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 6788999999999999999999999999999999999999999999999998764 577777799999999999999
Q ss_pred EEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhh
Q 000556 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKI 474 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (1426)
|+||++|++|+.|+.+++.+- | ..||... +.++
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~~----Ll~a---------- 257 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTRG----LLAA---------- 257 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccHH----HHhh----------
Confidence 999999999999999988641 1 1111000 0000
Q ss_pred HHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCccccc
Q 000556 475 SDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDG 554 (1426)
Q Consensus 475 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~ 554 (1426)
.|. .... ..
T Consensus 258 -----~p~---------------------------------------------------------------~~~~---~~ 266 (539)
T COG1123 258 -----VPR---------------------------------------------------------------LGDE---KI 266 (539)
T ss_pred -----CCC---------------------------------------------------------------cccc---cc
Confidence 000 0000 00
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHH
Q 000556 555 GIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634 (1426)
Q Consensus 555 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~ 634 (1426)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccch
Q 000556 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESI 714 (1426)
Q Consensus 635 ~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~ 714 (1426)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCc
Q 000556 715 GVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGED 794 (1426)
Q Consensus 715 g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1426)
...
T Consensus 267 ----------------------------------------------------------------~~~------------- 269 (539)
T COG1123 267 ----------------------------------------------------------------IRL------------- 269 (539)
T ss_pred ----------------------------------------------------------------ccc-------------
Confidence 000
Q ss_pred ccCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEec
Q 000556 795 ISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMG 874 (1426)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G 874 (1426)
.. . .. .+ ...-++.+|++..+..+.... ....+...+++||||.+++||++||+|
T Consensus 270 ~~-----~-------~~----------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVG 324 (539)
T COG1123 270 PR-----R-------GP----------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVG 324 (539)
T ss_pred cc-----c-------cc----------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEEC
Confidence 00 0 00 00 001245566554444322110 000134579999999999999999999
Q ss_pred cCCCchhHHHhhhcCCCCCceEEEEEEEcCccC--Cc---ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCC
Q 000556 875 VSGAGKTTLMDVLSGRKTGGYITGNITISGYPK--KQ---ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEV 947 (1426)
Q Consensus 875 ~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~--~~---~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~ 947 (1426)
+||||||||.++|+|...+ ..|.|.++|.+. +. ...++.+-+++|++ .+.|.+||++.+.-....... .
T Consensus 325 eSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~ 400 (539)
T COG1123 325 ESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--G 400 (539)
T ss_pred CCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--c
Confidence 9999999999999998874 479999999761 11 12345566677765 567999999999765444332 2
Q ss_pred CHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000556 948 DSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1426)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~ 1026 (1426)
...++++++.++++.++|.+ ..+.. +..||||||||++|||||+.+|++|++|||||.||+..+..|.++|+++
T Consensus 401 ~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l 475 (539)
T COG1123 401 SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL 475 (539)
T ss_pred chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence 25666778999999999986 45555 4689999999999999999999999999999999999999999999999
Q ss_pred HhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1027 VDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1027 ~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
.++ |.|.|+++||... +.+.||||.+|++ |++|..||.
T Consensus 476 q~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 476 QEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 876 9999999999874 7789999999985 899999985
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-64 Score=689.15 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=179.4
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+++|+.. ...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999998521 2359999999999999999999999999999999999876 347999999999
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 976 (1426)
+++ ..+|+.++||||++.+++. |++|||.... +. .++.++++++..++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~----sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QY----SDEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CC----CHHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 765 3467889999999999975 9999995211 12 234588899998887644 5556653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~ 1494 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK 1494 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999875 4899999999975 5677999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 1495 -G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 -GEVAEFGAP 1503 (1522)
T ss_pred -CEEEEECCH
Confidence 899999985
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-63 Score=676.66 Aligned_cols=217 Identities=18% Similarity=0.294 Sum_probs=180.6
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc------------
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG------------ 894 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------------ 894 (1426)
..++|+||+|+|+.. ++.++|+|+|++|+||+.+||+||||||||||+++|.|...+.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999999632 1236999999999999999999999999999999999976541
Q ss_pred ----------------------------------------eEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCH
Q 000556 895 ----------------------------------------YITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTV 931 (1426)
Q Consensus 895 ----------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv 931 (1426)
+.+|+|++||.++.+ ..+++.+|||+|++.++. .|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccH
Confidence 147999999998764 456888999999999985 799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000556 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlL 1004 (1426)
+|||.|+. + +.+. +.++++++..++.+ -.|+.||.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99998852 1 2222 34777887777654 457788854 467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHhhcceEEEEecC---cE-EEEEcCC
Q 000556 1005 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG---GQ-EIYVGPL 1066 (1426)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g---g~-~v~~G~~ 1066 (1426)
|||||+||+.+++.|++.|+++. .+|+|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999985 56889999999973 66 4478874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-63 Score=623.13 Aligned_cols=460 Identities=21% Similarity=0.293 Sum_probs=348.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999999861 128999999998765432 2569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++......+. .+ ..+....++++++.+||++..+..+
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------------------------------YDAMYLRAQKLLAQLKLDINPATPV---- 141 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------------------------------HHHHHHHHHHHHHHcCCCCCcccch----
Confidence 999999998653211000 00 0011234577899999987777655
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 142 -GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-H-GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 3 44556678888999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
|++++.|+.+++.. .+..+.
T Consensus 219 G~i~~~~~~~~~~~--------------------------------------------~~~~~~---------------- 238 (506)
T PRK13549 219 GRHIGTRPAAGMTE--------------------------------------------DDIITM---------------- 238 (506)
T ss_pred CEEeeecccccCCH--------------------------------------------HHHHHH----------------
Confidence 99999886543200 000000
Q ss_pred CccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHH
Q 000556 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1426)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1426)
+. . .. ..
T Consensus 239 ------------------------------------------------------------~~--~--~~-~~-------- 245 (506)
T PRK13549 239 ------------------------------------------------------------MV--G--RE-LT-------- 245 (506)
T ss_pred ------------------------------------------------------------hh--C--cC-cc--------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHH
Q 000556 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1426)
Q Consensus 561 lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1426)
T Consensus 246 -------------------------------------------------------------------------------- 245 (506)
T PRK13549 246 -------------------------------------------------------------------------------- 245 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000556 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1426)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1426)
.
T Consensus 246 ----------------------------------------------------------------------------~--- 246 (506)
T PRK13549 246 ----------------------------------------------------------------------------A--- 246 (506)
T ss_pred ----------------------------------------------------------------------------c---
Confidence 0
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCCC
Q 000556 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1426)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1426)
.. + .. .
T Consensus 247 ----------------------------------~~-~---------------------~~-------------~----- 252 (506)
T PRK13549 247 ----------------------------------LY-P---------------------RE-------------P----- 252 (506)
T ss_pred ----------------------------------cc-c---------------------cc-------------c-----
Confidence 00 0 00 0
Q ss_pred CcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCch
Q 000556 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1426)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 880 (1426)
. .. + ..-+.++|+++.++.. +++.+|+||||+|++||++||+|+|||||
T Consensus 253 -~------------~~--~------~~~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGK 301 (506)
T PRK13549 253 -H------------TI--G------EVILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGR 301 (506)
T ss_pred -c------------CC--C------CceEEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCH
Confidence 0 00 0 0125667776554210 12358999999999999999999999999
Q ss_pred hHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHH
Q 000556 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLP--PEVDSET 951 (1426)
Q Consensus 881 TTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~f~a~lr~~--~~~~~~~ 951 (1426)
|||+++|+|...+ +.+|+|.++|.++... ..++.++|++|++ .+++.+||.|++.+....... ...+...
T Consensus 302 STLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (506)
T PRK13549 302 TELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380 (506)
T ss_pred HHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH
Confidence 9999999997642 1379999999875421 1244589999985 467889999999875321111 0112233
Q ss_pred HHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC
Q 000556 952 RKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030 (1426)
Q Consensus 952 ~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g 1030 (1426)
..+.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|
T Consensus 381 ~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g 455 (506)
T PRK13549 381 ELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQG 455 (506)
T ss_pred HHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCC
Confidence 445689999999996 5667664 5799999999999999999999999999999999999999999999998889
Q ss_pred CEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCc
Q 000556 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1426)
Q Consensus 1031 ~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~ 1068 (1426)
+|||+++|++. ++.+.||++++|++ |+++..|+.++
T Consensus 456 ~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 456 VAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred CEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 99999999986 57889999999986 78888887643
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-63 Score=627.24 Aligned_cols=487 Identities=21% Similarity=0.244 Sum_probs=353.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----------CCC-------ccce
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG----------EFV-------PERT 227 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----------~~~-------~~~~ 227 (1426)
.++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|..+. ... .++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999987 899999986431 111 1236
Q ss_pred EEEecCCC--CCCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH
Q 000556 228 AAYISQHD--NHIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1426)
Q Consensus 228 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1426)
++||+|++ .+++.+||+||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS-R---------------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 99999987 5788899999999876432 110 0 012234677899
Q ss_pred HhCCcc---cccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEE
Q 000556 305 VLGLEV---CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL 381 (1426)
Q Consensus 305 ~lgL~~---~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~ 381 (1426)
.+||++ ..+ ..+..|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++.+.. +++||.+
T Consensus 152 ~~gL~~~~~~~~-----~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILS-----RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHh-----CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 234 3455799999999999999999999999999999999999999999999987533 4456668
Q ss_pred ecCchhHHhhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHH
Q 000556 382 LQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEF 461 (1426)
Q Consensus 382 ~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 461 (1426)
+|+..++.+++|+|++|++|++++.|+++++.+ -|.+....+ +
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~-----------------------------l 268 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRA-----------------------------L 268 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhh-----------------------------h
Confidence 999999999999999999999999998876521 000000000 0
Q ss_pred HHHHHhcccchhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh
Q 000556 462 AEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLF 541 (1426)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f 541 (1426)
... .+
T Consensus 269 ~~~---------------~~------------------------------------------------------------ 273 (623)
T PRK10261 269 LAA---------------VP------------------------------------------------------------ 273 (623)
T ss_pred hhc---------------cC------------------------------------------------------------
Confidence 000 00
Q ss_pred hcccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhh
Q 000556 542 LRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVF 621 (1426)
Q Consensus 542 ~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~ 621 (1426)
.... .. .
T Consensus 274 ---~~~~--~~-~------------------------------------------------------------------- 280 (623)
T PRK10261 274 ---QLGA--MK-G------------------------------------------------------------------- 280 (623)
T ss_pred ---cccc--cc-c-------------------------------------------------------------------
Confidence 0000 00 0
Q ss_pred hheeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCC
Q 000556 622 LTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGY 701 (1426)
Q Consensus 622 i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 701 (1426)
.
T Consensus 281 -------------------------------------------------------------------------------~ 281 (623)
T PRK10261 281 -------------------------------------------------------------------------------L 281 (623)
T ss_pred -------------------------------------------------------------------------------c
Confidence 0
Q ss_pred cccccCCCCccchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeecccccccccccccc
Q 000556 702 SWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRG 781 (1426)
Q Consensus 702 ~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1426)
.... . . ..... . ..
T Consensus 282 ~~~~----~-------------~-----------------------------------~~~~~-------~-------~~ 295 (623)
T PRK10261 282 DYPR----R-------------F-----------------------------------PLISL-------E-------HP 295 (623)
T ss_pred cCCc----c-------------c-----------------------------------ccccc-------c-------cc
Confidence 0000 0 0 00000 0 00
Q ss_pred ccccccCCCCCCcccCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeE
Q 000556 782 TVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLS 861 (1426)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs 861 (1426)
.. .... . ... .. +....-+.++|+++.++..... . ........+|+|||
T Consensus 296 ------~~---~~~~-----~-------~~~--~~------~~~~~~L~~~~l~~~y~~~~~~-~-~~~~~~~~~l~~vs 344 (623)
T PRK10261 296 ------AK---QEPP-----I-------EQD--TV------VDGEPILQVRNLVTRFPLRSGL-L-NRVTREVHAVEKVS 344 (623)
T ss_pred ------cc---cCcc-----c-------ccc--cc------cCCCceEEEeeeEEEEcCCCcc-c-cccCCceEEEeeeE
Confidence 00 0000 0 000 00 0001137888998877421000 0 00001246999999
Q ss_pred EEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc------cccceEEEeccCC--CCCCCCCHHH
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQND--IHSPFVTVYE 933 (1426)
Q Consensus 862 ~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~~~~lTv~e 933 (1426)
|+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++... .+++.++|++|++ .+++.+||.|
T Consensus 345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~ 422 (623)
T PRK10261 345 FDLWPGETLSLVGESGSGKSTTGRALLRLVES--QGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGD 422 (623)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHH
Confidence 99999999999999999999999999998753 479999999875421 2355799999997 4788999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000556 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1426)
Q Consensus 934 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD 1012 (1426)
++.+....+. ....+..++++.++++.+||. +..++. +..|||||||||+|||||+.+|+||||||||+|||
T Consensus 423 ~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 423 SIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9987643321 112334456789999999996 556665 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1013 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1013 ~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+.++..++++|++++++ |.|||++||+++ .+.+.+|++++|++ |+++..|+.
T Consensus 496 ~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~ 548 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPR 548 (623)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999775 899999999986 57789999999986 799999875
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=620.18 Aligned_cols=458 Identities=21% Similarity=0.288 Sum_probs=347.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 45999999999999999999999999999999999999987 9999999998765432 2469999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++..... ..+.. +..+ ..+....++.+++.+||.+..++.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~--------------~~~~-----------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV--------------NIID-----------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc--------------cccC-----------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 0000 00112346778999999887776554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.+++|+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-E-GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999865 3 44556688888999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
|++++.|+++++.. ++..+..
T Consensus 221 G~i~~~g~~~~~~~--------------------------------------------~~~~~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN--------------------------------------------DDIVRLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH--------------------------------------------HHHHHHh---------------
Confidence 99999987654210 0000000
Q ss_pred CccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHH
Q 000556 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1426)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1426)
. . .. ..
T Consensus 242 -------------------------------------------------------------~--~--~~-~~-------- 247 (510)
T PRK09700 242 -------------------------------------------------------------V--G--RE-LQ-------- 247 (510)
T ss_pred -------------------------------------------------------------c--C--CC-cc--------
Confidence 0 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHH
Q 000556 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1426)
Q Consensus 561 lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1426)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000556 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1426)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1426)
....
T Consensus 248 ------------------------------------------------------------~~~~---------------- 251 (510)
T PRK09700 248 ------------------------------------------------------------NRFN---------------- 251 (510)
T ss_pred ------------------------------------------------------------cccc----------------
Confidence 0000
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCCC
Q 000556 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1426)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1426)
.. .. ..
T Consensus 252 -------------------------------------~~--------------------~~-------------~~---- 257 (510)
T PRK09700 252 -------------------------------------AM--------------------KE-------------NV---- 257 (510)
T ss_pred -------------------------------------cc--------------------cc-------------cc----
Confidence 00 00 00
Q ss_pred CcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCch
Q 000556 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1426)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 880 (1426)
. . .. .+..+.++|++..+ + .+|+|+|+++++||+++|+|||||||
T Consensus 258 -~-------~----~~--------~~~~l~~~~l~~~~-------------~--~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK09700 258 -S-------N----LA--------HETVFEVRNVTSRD-------------R--KKVRDISFSVCRGEILGFAGLVGSGR 302 (510)
T ss_pred -c-------c----CC--------CCcEEEEeCccccC-------------C--CcccceeEEEcCCcEEEEECCCCCCH
Confidence 0 0 00 00136677776432 1 27999999999999999999999999
Q ss_pred hHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccC---CCCCCCCCHHHHHHHHHHhc---CCC--C-C
Q 000556 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQN---DIHSPFVTVYESLLYSAWLR---LPP--E-V 947 (1426)
Q Consensus 881 TTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~---~~~~~~lTv~e~l~f~a~lr---~~~--~-~ 947 (1426)
|||+++|+|..++ .+|+|.++|.+.... ..++.+||++|+ ..+++.+||.|++.+....+ ... . .
T Consensus 303 STLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK09700 303 TELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLF 380 (510)
T ss_pred HHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhcccccccccccccccccc
Confidence 9999999998653 479999999875421 224568999998 45778899999998653211 000 0 1
Q ss_pred CHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000556 948 DSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1426)
Q Consensus 948 ~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~ 1026 (1426)
.....++.++++++.+++. +..++.+ ..|||||||||.||++|+.+|+||+|||||+|||+.++..+++.|+++
T Consensus 381 ~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l 455 (510)
T PRK09700 381 HEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQL 455 (510)
T ss_pred ChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHH
Confidence 1222335678999999996 6677764 579999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1027 ~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+++|.|||+++|++. ++.+.+|++++|++ |+++..++.
T Consensus 456 ~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 456 ADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 878999999999986 57889999999986 688888765
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-63 Score=617.24 Aligned_cols=450 Identities=21% Similarity=0.330 Sum_probs=345.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999987 9999999988754321 3469999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++.......... + ..+.+..++++++.+||++..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRI-------------------D-----------WKKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCcc-------------------C-----------HHHHHHHHHHHHHHcCCCCCccCchh---
Confidence 99999999864321000000 0 00112345678999999987776554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|+.+++.++||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-Q-GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 6999999999999999999999999999999999999999999999864 3 44566678888999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
|+++..|+.+++.. ++..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998876542100 0000000
Q ss_pred CccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHH
Q 000556 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1426)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1426)
+ . .. .
T Consensus 238 -------------------------------------------------------------~--~--~~-~--------- 242 (501)
T PRK10762 238 -------------------------------------------------------------V--G--RK-L--------- 242 (501)
T ss_pred -------------------------------------------------------------c--C--CC-c---------
Confidence 0 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHH
Q 000556 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1426)
Q Consensus 561 lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1426)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000556 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1426)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1426)
..
T Consensus 243 ---------------------------------------------------------------~~--------------- 244 (501)
T PRK10762 243 ---------------------------------------------------------------ED--------------- 244 (501)
T ss_pred ---------------------------------------------------------------cc---------------
Confidence 00
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCCC
Q 000556 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1426)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1426)
. .+ .
T Consensus 245 -------------------------------------~---------------------~~-------------~----- 248 (501)
T PRK10762 245 -------------------------------------Q---------------------YP-------------R----- 248 (501)
T ss_pred -------------------------------------c---------------------cc-------------c-----
Confidence 0 00 0
Q ss_pred CcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCch
Q 000556 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1426)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 880 (1426)
. .. + + .+..+.++|++. .+|+|+||++++||++||+|||||||
T Consensus 249 -~------~~----~-------~-~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~liG~NGsGK 291 (501)
T PRK10762 249 -L------DK----A-------P-GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVSGLMGAGR 291 (501)
T ss_pred -c------cc----C-------C-CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEecCCCCCH
Confidence 0 00 0 0 001255666541 26999999999999999999999999
Q ss_pred hHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCC---CCCCHH
Q 000556 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLP---PEVDSE 950 (1426)
Q Consensus 881 TTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~f~a~lr~~---~~~~~~ 950 (1426)
|||+++|+|...+ .+|+|.++|.++... ..++.+||++|++ .+++.+||.|++.+....... .....+
T Consensus 292 STLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 369 (501)
T PRK10762 292 TELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHA 369 (501)
T ss_pred HHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHH
Confidence 9999999998653 479999999875431 1345689999996 467889999999875321110 011223
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000556 951 TRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1426)
Q Consensus 951 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~ 1029 (1426)
..++.++++++.++|. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++
T Consensus 370 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~ 444 (501)
T PRK10762 370 DEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE 444 (501)
T ss_pred HHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHC
Confidence 3345688999999995 5667664 579999999999999999999999999999999999999999999999878
Q ss_pred CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCc
Q 000556 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1426)
Q Consensus 1030 g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~ 1068 (1426)
|+|||+++|++. ++.+.+|++++|++ |+++..|+...
T Consensus 445 g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 445 GLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred CCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 999999999986 57889999999985 78988887653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-62 Score=669.30 Aligned_cols=211 Identities=24% Similarity=0.268 Sum_probs=179.8
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..+.|+||+++|+. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999999852 22359999999999999999999999999999999999876 357999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+.+ ..+++.++||||++.++.. |++|||... .+. .++.++++++.+++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~----sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEA----SSAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCC----CHHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 765 3567889999999999874 999999431 112 23458899999998765 35666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 977 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~-p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+++|+++ ....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEE
Confidence 468999999999999999996 89999999999999999999999999875 4799999999974 678899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 5 899999985
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-62 Score=614.77 Aligned_cols=464 Identities=22% Similarity=0.277 Sum_probs=346.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCCCc-------cceEEEecCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1426)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 469999999999999999999999999999999999998610 138999999998754321 24699999986
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc--
Q 000556 236 N--HIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-- 310 (1426)
Q Consensus 236 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 310 (1426)
. +.+.+||+|++.+..... +.. ..+...+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------------------------------REAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 100 0011234677899999975
Q ss_pred -cccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHH
Q 000556 311 -CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389 (1426)
Q Consensus 311 -~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~ 389 (1426)
..+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +.+||.++|+..++.
T Consensus 148 ~~~~~~-----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDY-----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhC-----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 23544 45799999999999999999999999999999999999999999999986533 445556788888999
Q ss_pred hhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcc
Q 000556 390 DLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFH 469 (1426)
Q Consensus 390 ~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (1426)
+++|+|++|++|++++.|+.+++.+. |. .+ ..
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~-------------------------~~--------~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PT-------------------------HP--------YT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CC-------------------------CH--------HH-------
Confidence 99999999999999999987654210 00 00 00
Q ss_pred cchhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCC
Q 000556 470 VGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKH 549 (1426)
Q Consensus 470 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~ 549 (1426)
+.+ +... ..
T Consensus 254 -----------------------------------------~~~----------------------------~~~~--~~ 262 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE--PS 262 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC--cc
Confidence 000 0000 00
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheecccc
Q 000556 550 SLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGC 629 (1426)
Q Consensus 550 ~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl 629 (1426)
T Consensus 263 -------------------------------------------------------------------------------- 262 (529)
T PRK15134 263 -------------------------------------------------------------------------------- 262 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCC
Q 000556 630 DPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPN 709 (1426)
Q Consensus 630 ~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~ 709 (1426)
T Consensus 263 -------------------------------------------------------------------------------- 262 (529)
T PRK15134 263 -------------------------------------------------------------------------------- 262 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCC
Q 000556 710 SYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARG 789 (1426)
Q Consensus 710 ~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1426)
. ..
T Consensus 263 --------------------------------------------------~-------------------~~-------- 265 (529)
T PRK15134 263 --------------------------------------------------G-------------------DP-------- 265 (529)
T ss_pred --------------------------------------------------c-------------------cc--------
Confidence 0 00
Q ss_pred CCCCcccCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcE
Q 000556 790 ESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVL 869 (1426)
Q Consensus 790 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 869 (1426)
.. . . .. + +.-++++|+++.++...+. . +...+.+.+|+|||++|++||+
T Consensus 266 -----~~-----~-------~----~~--~------~~~l~~~~l~~~~~~~~~~-~-~~~~~~~~il~~isl~i~~Ge~ 314 (529)
T PRK15134 266 -----VP-----L-------P----EP--A------SPLLDVEQLQVAFPIRKGI-L-KRTVDHNVVVKNISFTLRPGET 314 (529)
T ss_pred -----cc-----c-------C----CC--C------CCcccccCcEEEeecCccc-c-ccccccceeeecceeEEcCCCE
Confidence 00 0 0 00 0 0025566666665311000 0 0000124699999999999999
Q ss_pred EEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHh
Q 000556 870 TALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWL 941 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~l 941 (1426)
+||+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|++ .+++.+||.|++.+....
T Consensus 315 ~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~ 391 (529)
T PRK15134 315 LGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV 391 (529)
T ss_pred EEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh
Confidence 99999999999999999999763 479999999875421 1245689999996 467889999999886533
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q 000556 942 RLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020 (1426)
Q Consensus 942 r~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~ 1020 (1426)
+.. ..+....++.++++++.++|. +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..++
T Consensus 392 ~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 465 (529)
T PRK15134 392 HQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQIL 465 (529)
T ss_pred ccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHH
Confidence 211 122334456788999999997 456665 3579999999999999999999999999999999999999999
Q ss_pred HHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1021 RTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1021 ~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 466 ~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 466 ALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 999999875 899999999986 57788999999986 788888874
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-62 Score=664.80 Aligned_cols=210 Identities=20% Similarity=0.240 Sum_probs=179.0
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+++|+. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999999852 12469999999999999999999999999999999999864 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+.+ ..+++.++||||++.+++. |++|||.... +..++.++++++.++|.+. .|+.+|..
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~----------~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~ 1350 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE----------QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc----------CCCHHHHHHHHHHCCCHHHHHhCccccccccccC
Confidence 765 3467889999999999974 9999994311 1224558999999998654 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1351 -G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1351 -GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred -CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999999999875 4799999999975 5667999999986
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++.+|+.
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 799999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-62 Score=610.65 Aligned_cols=453 Identities=20% Similarity=0.265 Sum_probs=343.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 45999999999999999999999999999999999999988 9999999988765432 2458999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.|+.... + +.+..++++++.+||++..+..++
T Consensus 101 ~tv~e~l~~~~~~~------~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (510)
T PRK15439 101 LSVKENILFGLPKR------Q--------------------------------ASMQKMKQLLAALGCQLDLDSSAG--- 139 (510)
T ss_pred CcHHHHhhcccccc------h--------------------------------HHHHHHHHHHHHcCCCccccCChh---
Confidence 99999998853210 0 011235678899999877776554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++.++||+|++|++
T Consensus 140 --~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiivtHd~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 140 --SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-Q-GVGIVFISHKLPEIRQLADRISVMRD 215 (510)
T ss_pred --hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 3 44566688888999999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
|++++.|+.+++... + ..+.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~-----------------------------~~~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------D-----------------------------IIQAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH---------------H-----------------------------HHHHHhC------------c
Confidence 999999987653210 0 0000000 0
Q ss_pred CccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHH
Q 000556 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1426)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1426)
..... ....
T Consensus 240 ----------------------------------------------------------------~~~~~-~~~~------ 248 (510)
T PRK15439 240 ----------------------------------------------------------------AREKS-LSAS------ 248 (510)
T ss_pred ----------------------------------------------------------------ccccc-cccc------
Confidence 00000 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHH
Q 000556 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1426)
Q Consensus 561 lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1426)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000556 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1426)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1426)
. ..
T Consensus 249 ---------------------------------~---------------------------~~----------------- 251 (510)
T PRK15439 249 ---------------------------------Q---------------------------KL----------------- 251 (510)
T ss_pred ---------------------------------c---------------------------cc-----------------
Confidence 0 00
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCCC
Q 000556 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1426)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1426)
...+ + ..
T Consensus 252 ~~~~--------------------------------------------------------~-------------~~---- 258 (510)
T PRK15439 252 WLEL--------------------------------------------------------P-------------GN---- 258 (510)
T ss_pred cccc--------------------------------------------------------c-------------cc----
Confidence 0000 0 00
Q ss_pred CcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCch
Q 000556 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1426)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 880 (1426)
. . . .+. .+.-+..+|++. .+|+|||+++++||++||+|||||||
T Consensus 259 -~-------~-~-~~~--------~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK15439 259 -R-------R-Q-QAA--------GAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVVGAGR 302 (510)
T ss_pred -c-------c-c-cCC--------CCceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCCCCCH
Confidence 0 0 0 000 001256666651 15899999999999999999999999
Q ss_pred hHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHH
Q 000556 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLPPEVDSETRK 953 (1426)
Q Consensus 881 TTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~ 953 (1426)
|||+++|+|...+ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+.+........+
T Consensus 303 STLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~ 380 (510)
T PRK15439 303 TELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPAREN 380 (510)
T ss_pred HHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHH
Confidence 9999999998653 479999999875431 1234689999984 467889999998642111111001112233
Q ss_pred HHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCE
Q 000556 954 MFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032 (1426)
Q Consensus 954 ~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~t 1032 (1426)
+.++++++.++|. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|++++++|.|
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~t 455 (510)
T PRK15439 381 AVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVA 455 (510)
T ss_pred HHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCE
Confidence 5688999999997 6677764 579999999999999999999999999999999999999999999999888999
Q ss_pred EEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 1033 VVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1033 vi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
||+++|++. ++.+.||++++|++ |+++..|..+
T Consensus 456 iIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 456 VLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred EEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 999999997 58889999999985 7888887654
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-62 Score=611.35 Aligned_cols=445 Identities=23% Similarity=0.321 Sum_probs=342.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcC-----------------------ccC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNG-----------------------HDM 219 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~--~~~~~~~G~V~~~G-----------------------~~~ 219 (1426)
+.+|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 576 89999972 211
Q ss_pred C-------CC------CccceEEEecCC-CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHH
Q 000556 220 G-------EF------VPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285 (1426)
Q Consensus 220 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~ 285 (1426)
. .. ..++.++||+|+ +.+++.+||+||+.|+....+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~--------------------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG--------------------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH---------------------------
Confidence 0 00 013468999997 678888999999998654322100
Q ss_pred HHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHH
Q 000556 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC 365 (1426)
Q Consensus 286 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~ 365 (1426)
.+...+++++++.+||++..+..+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 011234677899999987766544 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhh
Q 000556 366 LKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQY 445 (1426)
Q Consensus 366 L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~ 445 (1426)
|+++++.. +++|+.++|+...+.++||+|++|++|++++.|+++++.+.+.
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~---------------------------- 261 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFM---------------------------- 261 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHH----------------------------
Confidence 99986543 4456668888888999999999999999998887654321000
Q ss_pred hcccCCCCccCCHHHHHHHHHhcccchhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHH
Q 000556 446 WTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIF 525 (1426)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~ 525 (1426)
+
T Consensus 262 -----------------~-------------------------------------------------------------- 262 (520)
T TIGR03269 262 -----------------E-------------------------------------------------------------- 262 (520)
T ss_pred -----------------h--------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHH
Q 000556 526 KLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSW 605 (1426)
Q Consensus 526 ~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~ 605 (1426)
... .
T Consensus 263 -------------------~~~-~-------------------------------------------------------- 266 (520)
T TIGR03269 263 -------------------GVS-E-------------------------------------------------------- 266 (520)
T ss_pred -------------------hch-h--------------------------------------------------------
Confidence 000 0
Q ss_pred HHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcH
Q 000556 606 ILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSP 685 (1426)
Q Consensus 606 l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp 685 (1426)
+
T Consensus 267 -------------------------------------------------------------------~------------ 267 (520)
T TIGR03269 267 -------------------------------------------------------------------V------------ 267 (520)
T ss_pred -------------------------------------------------------------------h------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCccchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcce
Q 000556 686 MSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAV 765 (1426)
Q Consensus 686 ~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~ 765 (1426)
.+
T Consensus 268 --------------------------------------------------------------------------~~---- 269 (520)
T TIGR03269 268 --------------------------------------------------------------------------EK---- 269 (520)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred eeccccccccccccccccccccCCCCCCcccCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhh
Q 000556 766 ITEESESNKQDNRIRGTVQLSARGESGEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMK 845 (1426)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~ 845 (1426)
. . . . +. ...-++++|+++.++...
T Consensus 270 ---------------~-------------~------~-------~----~~--------~~~~l~~~~l~~~~~~~~--- 293 (520)
T TIGR03269 270 ---------------E-------------C------E-------V----EV--------GEPIIKVRNVSKRYISVD--- 293 (520)
T ss_pred ---------------c-------------c------c-------c----CC--------CCceEEEeccEEEeccCC---
Confidence 0 0 0 0 00 001267778877663100
Q ss_pred hcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEc-Ccc---CCc------ccccce
Q 000556 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS-GYP---KKQ------ETFARI 915 (1426)
Q Consensus 846 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~~~~~~ 915 (1426)
.+.+.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++ |.+ ... ...++.
T Consensus 294 -----~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~ 366 (520)
T TIGR03269 294 -----RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDGRGRAKRY 366 (520)
T ss_pred -----CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhhHHHHhhh
Confidence 0124699999999999999999999999999999999998653 47999996 532 111 112456
Q ss_pred EEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCHHHHHHHH
Q 000556 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-----LIQSLVGLPGVSGLSTEQRKRLT 990 (1426)
Q Consensus 916 ~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~vg~~~~~~LSgGqrqRl~ 990 (1426)
+||++|++.+++.+||.|++.+...+. .+.+..++.++++++.++|.+ ..++. +..|||||||||+
T Consensus 367 i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq~qrv~ 437 (520)
T TIGR03269 367 IGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGERHRVA 437 (520)
T ss_pred EEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHHHHHHH
Confidence 899999988889999999998754321 122333456889999999975 34555 3579999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 991 iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||+||+.+|+||+|||||+|||+.+...+++.|++++++ |.|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 438 laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 512 (520)
T TIGR03269 438 LAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIGDP 512 (520)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999999999999999765 899999999986 57789999999985 788888864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-62 Score=608.54 Aligned_cols=459 Identities=18% Similarity=0.259 Sum_probs=344.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998761 128999999998765432 2469999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc-cccccCc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA-DTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vG~~ 319 (1426)
+||+||+.++......+.... ..+....++.+++.+||.+.. +..
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------------------------------YNAMYLRAKNLLRELQLDADNVTRP---- 138 (500)
T ss_pred CcHHHHHHhhccccccccccC------------------------------HHHHHHHHHHHHHHcCCCCCcccCc----
Confidence 999999988643210000000 001123457789999998654 333
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
+..|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++++ . +++|+.++|+..++.++||+|++|+
T Consensus 139 -~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 139 -VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-H-GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred -hhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 446999999999999999999999999999999999999999999999864 3 4556668889899999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhc
Q 000556 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1426)
+|++++.|+.+++.. +...+.
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 236 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDIITM--------------- 236 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHHHH---------------
Confidence 999987764321100 000000
Q ss_pred CCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHH
Q 000556 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1426)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1426)
+. . .. .
T Consensus 237 -------------------------------------------------------------~~--~--~~-~-------- 242 (500)
T TIGR02633 237 -------------------------------------------------------------MV--G--RE-I-------- 242 (500)
T ss_pred -------------------------------------------------------------Hh--C--cc-c--------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHH
Q 000556 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1426)
Q Consensus 560 ~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 639 (1426)
T Consensus 243 -------------------------------------------------------------------------------- 242 (500)
T TIGR02633 243 -------------------------------------------------------------------------------- 242 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHh
Q 000556 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVL 719 (1426)
Q Consensus 640 ~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L 719 (1426)
+
T Consensus 243 ----------------------------------~--------------------------------------------- 243 (500)
T TIGR02633 243 ----------------------------------T--------------------------------------------- 243 (500)
T ss_pred ----------------------------------c---------------------------------------------
Confidence 0
Q ss_pred hccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCC
Q 000556 720 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRN 799 (1426)
Q Consensus 720 ~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1426)
.. . + . .
T Consensus 244 ---~~-------------------------------~-~----------------------~-------------~---- 249 (500)
T TIGR02633 244 ---SL-------------------------------Y-P----------------------H-------------E---- 249 (500)
T ss_pred ---cc-------------------------------c-c----------------------c-------------c----
Confidence 00 0 0 0 0
Q ss_pred CCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCc
Q 000556 800 SSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879 (1426)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaG 879 (1426)
. . +. ...-+.++|+++.+... +++.+|+|+||++++||++||+||||||
T Consensus 250 --~-------~----~~--------~~~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsG 298 (500)
T TIGR02633 250 --P-------H----EI--------GDVILEARNLTCWDVIN----------PHRKRVDDVSFSLRRGEILGVAGLVGAG 298 (500)
T ss_pred --c-------c----CC--------CCceEEEeCCccccccc----------ccccccccceeEEeCCcEEEEeCCCCCC
Confidence 0 0 00 00125677776544100 1235899999999999999999999999
Q ss_pred hhHHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeccCC---CCCCCCCHHHHHHHHHH--hcCCCCCCHH
Q 000556 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQND---IHSPFVTVYESLLYSAW--LRLPPEVDSE 950 (1426)
Q Consensus 880 KTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~---~~~~~lTv~e~l~f~a~--lr~~~~~~~~ 950 (1426)
|||||++|+|..++ ..+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.+... ..........
T Consensus 299 KSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~ 377 (500)
T TIGR02633 299 RTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAA 377 (500)
T ss_pred HHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHH
Confidence 99999999998652 137999999987642 12345689999995 47888999999987532 1100011223
Q ss_pred HHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000556 951 TRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1426)
Q Consensus 951 ~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~ 1029 (1426)
..++.++++++.+++.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++
T Consensus 378 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 452 (500)
T TIGR02633 378 AELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452 (500)
T ss_pred HHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhC
Confidence 34456889999999964 466664 579999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1030 g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|.|||+++|++. ++.+.+|++++|++ |+++..++.
T Consensus 453 g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 453 GVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred CCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 999999999986 57889999999985 788877754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-61 Score=604.98 Aligned_cols=452 Identities=21% Similarity=0.303 Sum_probs=343.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 35999999999999999999999999999999999999887 9999999988754321 3569999999989999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++......+.. + ..+....++.+++.+||++..+..+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~--------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGIV--------------------N-----------RRLLNYEAREQLEHLGVDIDPDTPL---- 138 (501)
T ss_pred CCHHHHHHhcccccccCCC--------------------C-----------HHHHHHHHHHHHHHcCCCCCcCCch----
Confidence 9999999985321000000 0 0011234567899999987666544
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ . +++||.++|+..++.+++|+|++|++
T Consensus 139 -~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiiiitHd~~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 139 -KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-E-GRVILYVSHRMEEIFALCDAITVFKD 215 (501)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999864 3 44556688888899999999999999
Q ss_pred CeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhcC
Q 000556 401 GQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELRT 480 (1426)
Q Consensus 401 G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (1426)
|+++..++..+. .+.++..+.
T Consensus 216 G~i~~~~~~~~~-------------------------------------------~~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-------------------------------------------VDRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-------------------------------------------CCHHHHHHH----------------
Confidence 999865421100 000000000
Q ss_pred CccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHHH
Q 000556 481 PFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560 (1426)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g~ 560 (1426)
+. . .. ..
T Consensus 237 ------------------------------------------------------------~~--~--~~-~~-------- 243 (501)
T PRK11288 237 ------------------------------------------------------------MV--G--RE-IG-------- 243 (501)
T ss_pred ------------------------------------------------------------hc--C--CC-cc--------
Confidence 00 0 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHHH
Q 000556 561 LFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQY 640 (1426)
Q Consensus 561 lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~~ 640 (1426)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHhh
Q 000556 641 LLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVLK 720 (1426)
Q Consensus 641 l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L~ 720 (1426)
T Consensus 244 -------------------------------------------------------------------------------- 243 (501)
T PRK11288 244 -------------------------------------------------------------------------------- 243 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCCC
Q 000556 721 SRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRNS 800 (1426)
Q Consensus 721 ~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1426)
.. . . ..
T Consensus 244 --~~-------------------------------~------------------------~-------------~~---- 249 (501)
T PRK11288 244 --DI-------------------------------Y------------------------G-------------YR---- 249 (501)
T ss_pred --cc-------------------------------c------------------------c-------------cc----
Confidence 00 0 0 00
Q ss_pred CcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCch
Q 000556 801 SSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGK 880 (1426)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGK 880 (1426)
. . +. .+..+.++|+++. .+++|+|++|++||++||+|||||||
T Consensus 250 -~-------~----~~--------~~~~l~~~~~~~~-----------------~~l~~isl~i~~Ge~~~iiG~NGsGK 292 (501)
T PRK11288 250 -P-------R----PL--------GEVRLRLDGLKGP-----------------GLREPISFSVRAGEIVGLFGLVGAGR 292 (501)
T ss_pred -c-------c----CC--------CCcEEEEeccccC-----------------CcccceeEEEeCCcEEEEEcCCCCCH
Confidence 0 0 00 0113566666521 38999999999999999999999999
Q ss_pred hHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcC-CCC--CCHH
Q 000556 881 TTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRL-PPE--VDSE 950 (1426)
Q Consensus 881 TTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~f~a~lr~-~~~--~~~~ 950 (1426)
|||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++.+...... +.. ....
T Consensus 293 STLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 370 (501)
T PRK11288 293 SELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNR 370 (501)
T ss_pred HHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChH
Confidence 999999999865 3479999999865421 1245689999986 47888999999986432111 000 0122
Q ss_pred HHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 000556 951 TRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029 (1426)
Q Consensus 951 ~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~ 1029 (1426)
..++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.+...+++.|++++++
T Consensus 371 ~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~ 445 (501)
T PRK11288 371 WEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQ 445 (501)
T ss_pred HHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhC
Confidence 2345688999999994 6677764 479999999999999999999999999999999999999999999999888
Q ss_pred CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCcc
Q 000556 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRH 1069 (1426)
Q Consensus 1030 g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~~ 1069 (1426)
|.|||+++|++. ++.+.+|++++|++ |++++.|..++.
T Consensus 446 g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~~ 483 (501)
T PRK11288 446 GVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQA 483 (501)
T ss_pred CCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEccccC
Confidence 999999999986 58899999999985 789999987643
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-61 Score=597.43 Aligned_cols=450 Identities=18% Similarity=0.258 Sum_probs=341.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 56999999999999999999999999999999999999987 9999999998754322 3569999999888999
Q ss_pred CCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 241 MTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
+||+||+.++.. ..+... + ..+....++.+++.+||++..++.+
T Consensus 88 ~tv~~~l~~~~~~~~~~~~---------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~--- 132 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFV---------------------D-----------QDKMYRDTKAIFDELDIDIDPRAKV--- 132 (491)
T ss_pred CCHHHHhhccccccccccc---------------------C-----------HHHHHHHHHHHHHHcCCCCCccCch---
Confidence 999999987532 111000 0 0001224567899999987776555
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
..|||||||||+||++|+.+|++|+|||||+|||+.+..++.+.|+++++ . +.+|+.++|+.+++.++||+|++|+
T Consensus 133 --~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 133 --ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-R-GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred --hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999864 3 4455557888899999999999999
Q ss_pred CCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhhc
Q 000556 400 DGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDELR 479 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (1426)
+|+++..|+.+++.. ++..+.+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHHH--------------
Confidence 999998886542100 0000000
Q ss_pred CCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhHH
Q 000556 480 TPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAG 559 (1426)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~g 559 (1426)
. + .. .
T Consensus 231 --------------------------------------------------------------~--~--~~-~-------- 235 (491)
T PRK10982 231 --------------------------------------------------------------V--G--RS-L-------- 235 (491)
T ss_pred --------------------------------------------------------------h--C--CC-c--------
Confidence 0 0 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHHH
Q 000556 560 ALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFKQ 639 (1426)
Q Consensus 560 ~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~~ 639 (1426)
T Consensus 236 -------------------------------------------------------------------------------- 235 (491)
T PRK10982 236 -------------------------------------------------------------------------------- 235 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHHh
Q 000556 640 YLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQVL 719 (1426)
Q Consensus 640 ~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~L 719 (1426)
.
T Consensus 236 -----------------------------------------------------------------~-------------- 236 (491)
T PRK10982 236 -----------------------------------------------------------------T-------------- 236 (491)
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred hccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCCC
Q 000556 720 KSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGRN 799 (1426)
Q Consensus 720 ~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1426)
. ... ..
T Consensus 237 --------------------------------------~--------------------~~~-------------~~--- 242 (491)
T PRK10982 237 --------------------------------------Q--------------------RFP-------------DK--- 242 (491)
T ss_pred --------------------------------------c--------------------ccc-------------cc---
Confidence 0 000 00
Q ss_pred CCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCc
Q 000556 800 SSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAG 879 (1426)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaG 879 (1426)
. . . + .+..+.++|+++.. +.+|+|||+.+++||++||+||||||
T Consensus 243 --~-------~----~-------~-~~~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsG 286 (491)
T PRK10982 243 --E-------N----K-------P-GEVILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAK 286 (491)
T ss_pred --c-------C----C-------C-CCcEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCC
Confidence 0 0 0 0 01136777776641 13899999999999999999999999
Q ss_pred hhHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCCC---CCCCCCHHHHHHHHH--HhcCCCC-CCH
Q 000556 880 KTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDI---HSPFVTVYESLLYSA--WLRLPPE-VDS 949 (1426)
Q Consensus 880 KTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~---~~~~lTv~e~l~f~a--~lr~~~~-~~~ 949 (1426)
||||+++|+|..++ .+|+|.++|.++... ..++.++|++|+.. +++.+|+.++..+.. ....... ...
T Consensus 287 KSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (491)
T PRK10982 287 RTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDN 364 (491)
T ss_pred HHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCc
Confidence 99999999998753 479999999876432 12445899999853 577888877743221 0000001 122
Q ss_pred HHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 000556 950 ETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028 (1426)
Q Consensus 950 ~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~ 1028 (1426)
...++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|+++.+
T Consensus 365 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~ 439 (491)
T PRK10982 365 SRMKSDTQWVIDSMRVKTPGHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK 439 (491)
T ss_pred HHHHHHHHHHHHhcCccCCCccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH
Confidence 23345678899999995 4556653 57999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 1029 TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1029 ~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
+|+|||++||+++ ++.+.+|++++|++ |+++..++..
T Consensus 440 ~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 440 KDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred CCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 8999999999986 57889999999986 7888777653
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-60 Score=586.81 Aligned_cols=447 Identities=19% Similarity=0.256 Sum_probs=329.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCC--C-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNH--I- 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~--~- 238 (1426)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 35899999999999999999999999999999999999987 9999999976643321 2458999997542 1
Q ss_pred -----CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 000556 239 -----GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1426)
Q Consensus 239 -----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1426)
..+||+|++.+.. +...+++.+++.+||++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhh
Confidence 1457777664310 01123567889999988777
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
..++ .|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ . +.+||.++|+..++.+.||
T Consensus 131 ~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 131 RRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-S-GITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCeEEEEeCCHHHHHhhCC
Confidence 6554 6999999999999999999999999999999999999999999999865 3 4455557888889999999
Q ss_pred eEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchh
Q 000556 394 DIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQK 473 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (1426)
+|++|++|+++++|+++++.+- +.+. .+. .
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~~---------------~~~~-------------------------~~~---~------- 233 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQQ---------------ALVA-------------------------QLA---H------- 233 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhcc---------------hhhh-------------------------hhh---h-------
Confidence 9999999999999987654210 0000 000 0
Q ss_pred hHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccc
Q 000556 474 ISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTD 553 (1426)
Q Consensus 474 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~ 553 (1426)
. + .... ..
T Consensus 234 ------------------------------------~-------~--------------------------~~~~--~~- 241 (490)
T PRK10938 234 ------------------------------------S-------E--------------------------QLEG--VQ- 241 (490)
T ss_pred ------------------------------------h-------h--------------------------ccCc--cc-
Confidence 0 0 0000 00
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCH
Q 000556 554 GGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNA 633 (1426)
Q Consensus 554 ~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~ 633 (1426)
T Consensus 242 -------------------------------------------------------------------------------- 241 (490)
T PRK10938 242 -------------------------------------------------------------------------------- 241 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccc
Q 000556 634 GRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYES 713 (1426)
Q Consensus 634 ~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~ 713 (1426)
.|
T Consensus 242 ---------------------------------------~~--------------------------------------- 243 (490)
T PRK10938 242 ---------------------------------------LP--------------------------------------- 243 (490)
T ss_pred ---------------------------------------cC---------------------------------------
Confidence 00
Q ss_pred hhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCC
Q 000556 714 IGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGE 793 (1426)
Q Consensus 714 ~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1426)
. . ...
T Consensus 244 -----------------------------------------------~--~--------------~~~------------ 248 (490)
T PRK10938 244 -----------------------------------------------E--P--------------DEP------------ 248 (490)
T ss_pred -----------------------------------------------c--c--------------ccc------------
Confidence 0 0 000
Q ss_pred cccCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEe
Q 000556 794 DISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALM 873 (1426)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 873 (1426)
. . +... . .....++++|+++.++ ++.+|+|+||.+++||+++|+
T Consensus 249 -~------~--------~~~~-~-------~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~ 292 (490)
T PRK10938 249 -S------A--------RHAL-P-------ANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIV 292 (490)
T ss_pred -c------c--------cccc-C-------CCCceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEE
Confidence 0 0 0000 0 0011378889888763 245999999999999999999
Q ss_pred ccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc----ccccceEEEeccCCCCCC--CCCHHHHHHHHHHh--cCCC
Q 000556 874 GVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ----ETFARISGYCEQNDIHSP--FVTVYESLLYSAWL--RLPP 945 (1426)
Q Consensus 874 G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~q~~~~~~--~lTv~e~l~f~a~l--r~~~ 945 (1426)
||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+.+ ..|+++++.+.... ....
T Consensus 293 G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (490)
T PRK10938 293 GPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQ 371 (490)
T ss_pred CCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccccccc
Confidence 99999999999999996431 137999999976422 123456899999875543 24677766543211 1111
Q ss_pred CCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH
Q 000556 946 EVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024 (1426)
Q Consensus 946 ~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~ 1024 (1426)
... ...++.++++++.++|.+ ..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus 372 ~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~ 445 (490)
T PRK10938 372 AVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVD 445 (490)
T ss_pred CCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHH
Confidence 111 223456889999999987 677664 5799999999999999999999999999999999999999999999
Q ss_pred HHHhCC-CEEEEEecCCCHHHHh-hcceEEEEecCcEEEEE
Q 000556 1025 NTVDTG-RTVVCTIHQPGIDIFD-AFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 1025 ~~~~~g-~tvi~~~Hq~~~~i~~-~fD~v~ll~~gg~~v~~ 1063 (1426)
+++++| .|||+++|++. ++.+ .+|++++|++ |+++..
T Consensus 446 ~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 446 VLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 998775 46999999986 4655 5899999986 566554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-58 Score=510.59 Aligned_cols=470 Identities=25% Similarity=0.323 Sum_probs=367.0
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCCcc-------ceEEEecC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFVPE-------RTAAYISQ 233 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~~~-------~~~~yv~Q 233 (1426)
....++++|||.|++||.+||+|.||||||-..+.+.|+++.. ...+|+|.|+|+++-....+ ..|+.|+|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 3467999999999999999999999999999999999999763 45689999999987554432 36899999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccc
Q 000556 234 HD--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVC 311 (1426)
Q Consensus 234 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 311 (1426)
+| .+.|-.|+..-|.-..+++... ...+++.++-++|+..|+.+-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~---------------------------------~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGL---------------------------------SRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcc---------------------------------cHHHHHHHHHHHHHHcCCCch
Confidence 97 4667777777776555543111 112234567788999999876
Q ss_pred ccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhh
Q 000556 312 ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391 (1426)
Q Consensus 312 ~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~ 391 (1426)
...+ +.++.+|||||||||.||.||+++|++|+-||||++||.....+|.+.|+++-.. -+..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~-~gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAE-LGMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHH-hCcEEEEEeccHHHHHHh
Confidence 5433 4678899999999999999999999999999999999999999999999998765 456677799999999999
Q ss_pred cCeEEEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccc
Q 000556 392 FDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVG 471 (1426)
Q Consensus 392 fD~vilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1426)
+|+|+||.+|+++++|+.+.+.. .|. .||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~Pq-------------------------HpYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQ-------------------------HPYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCC-------------------------ChHH-----------------
Confidence 99999999999999998876532 111 0000
Q ss_pred hhhHHhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcc
Q 000556 472 QKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSL 551 (1426)
Q Consensus 472 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~ 551 (1426)
|.++ .
T Consensus 255 ---------------------------------------r~Ll------------------------------~------ 259 (534)
T COG4172 255 ---------------------------------------RKLL------------------------------A------ 259 (534)
T ss_pred ---------------------------------------HHHH------------------------------h------
Confidence 0000 0
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCC
Q 000556 552 TDGGIYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDP 631 (1426)
Q Consensus 552 ~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~ 631 (1426)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCc
Q 000556 632 NAGRFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSY 711 (1426)
Q Consensus 632 ~~~~ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~ 711 (1426)
. | |.
T Consensus 260 ----------------------------------------a------------------------e----------P~-- 263 (534)
T COG4172 260 ----------------------------------------A------------------------E----------PS-- 263 (534)
T ss_pred ----------------------------------------c------------------------C----------CC--
Confidence 0 0 00
Q ss_pred cchhHHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCC
Q 000556 712 ESIGVQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGES 791 (1426)
Q Consensus 712 ~~~g~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1426)
.
T Consensus 264 -----------------------------------------------------------------------------g-- 264 (534)
T COG4172 264 -----------------------------------------------------------------------------G-- 264 (534)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred CCcccCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEE
Q 000556 792 GEDISGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTA 871 (1426)
Q Consensus 792 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~a 871 (1426)
. . .. ..+..|.-++.+|+...++.+..+-. ...+...++++||++.++||.+|
T Consensus 265 ---~--------------~-~p-------~~~~~~~ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl~L~~gqTlG 317 (534)
T COG4172 265 ---D--------------P-PP-------LPEDAPVLLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLTLRRGQTLG 317 (534)
T ss_pred ---C--------------C-CC-------CCCCCCceEEecceEEEEecCCcccc--ccchheEEeccceeEecCCCeEE
Confidence 0 0 00 00011234566666655554422110 01234579999999999999999
Q ss_pred EeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc------cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcC
Q 000556 872 LMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRL 943 (1426)
Q Consensus 872 l~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~ 943 (1426)
|+|.||||||||-.+|.+.... +|+|.++|.++... ..++.+-.|+|++. +.|.+||.+-+.-+.....
T Consensus 318 lVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 318 LVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999987653 59999999987642 34667889999984 6799999999887766655
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH
Q 000556 944 PPEVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022 (1426)
Q Consensus 944 ~~~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~ 1022 (1426)
| ..+..++++++.++|+.+||++.. +.. +..+|||||||++|||||+-+|++++||||||.||..-+..|.++
T Consensus 395 ~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~L 468 (534)
T COG4172 395 P-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDL 468 (534)
T ss_pred C-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHH
Confidence 4 457788999999999999998743 332 468999999999999999999999999999999999999999999
Q ss_pred HHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1023 VRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1023 l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|+++.++ |.+-++++||.. -+-.+||+|+||++ |++|..||.
T Consensus 469 Lr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 469 LRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeC-CEEeeeCCH
Confidence 9999754 999999999986 47789999999985 899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-57 Score=572.63 Aligned_cols=201 Identities=22% Similarity=0.303 Sum_probs=164.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP--DSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECC-c-
Confidence 488999988763 24699999999999999999999999999999999998653 479999854 1
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000556 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 985 (1426)
..+||++|+. .+++.+||.|++.+....+. .... ...++++++.+++.+ ..+..+ ..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 67788999999987643221 1111 123457899999964 456653 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEE-EEc
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1064 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v-~~G 1064 (1426)
||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. | |||+++|++. .+...+|++++|++||+++ +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999986 5778899999998767776 444
Q ss_pred C
Q 000556 1065 P 1065 (1426)
Q Consensus 1065 ~ 1065 (1426)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-57 Score=565.71 Aligned_cols=198 Identities=18% Similarity=0.265 Sum_probs=164.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 488999998873 23599999999999999999999999999999999998653 4799999873
Q ss_pred CcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000556 908 KQETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgG 984 (1426)
+.+||++|+.. +.+.+|++|++.+.. .. . ..++.++++++.+++. +..+..+ ..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHH
Confidence 45899999864 456789999986421 11 1 1134578899999994 5666654 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEE-EE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v-~~ 1063 (1426)
||||++||++|+.+|+||+|||||+|||+.+...+++.|+++ +.|||++||++. .+.+.+|++++|++ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999986 57788999999986 5666 77
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-56 Score=560.14 Aligned_cols=201 Identities=20% Similarity=0.277 Sum_probs=164.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.+. ++.+|+|||++|++|++++|+||||||||||+++|+|...+ .+|+|.+++.
T Consensus 322 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP--DSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCeEEEECCc--
Confidence 488999988763 24699999999999999999999999999999999998653 4799998541
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000556 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGq 985 (1426)
..+||++|+. .+++.+||.|++.+...... .... +..++++++.+++.+ ..+..+ ..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHH
Confidence 1489999986 47788999999987542211 1111 123567899999964 456653 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEE-EEc
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVG 1064 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v-~~G 1064 (1426)
||||+||++|+.+|++|+|||||+|||+.+...+++.|+++. .|||+++|++. .+.+.+|++++|++||+++ +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999873 48999999986 5778899999998767766 444
Q ss_pred C
Q 000556 1065 P 1065 (1426)
Q Consensus 1065 ~ 1065 (1426)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-54 Score=547.84 Aligned_cols=197 Identities=21% Similarity=0.354 Sum_probs=161.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 488999988773 3469999999999999999999999999999999999865 34799998641
Q ss_pred CcccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000556 908 KQETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgG 984 (1426)
..+||++|+. .+.+..|+.+++.- .. + ......+.++++.+++.. ..++.+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 11 1 112345789999999964 566664 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEE-EE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v-~~ 1063 (1426)
|||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||+++|++. .+...||++++|++ |+++ |.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999986 47788999999986 6776 77
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 775
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-55 Score=546.82 Aligned_cols=211 Identities=20% Similarity=0.234 Sum_probs=172.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ + ..|+++|+++++||++||+||||||||||+++|+|...+ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 478888887653 1 258999999999999999999999999999999998653 47999885
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
..++|++|+..+.+.+||+|++.+..... .. ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 14899999988888899999998742111 11 124688999999998877764 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+...+|++++|+ | ++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeec
Confidence 999999999999999999999999999999999999999764 899999999986 4778899999996 3 77766764
Q ss_pred Ccc---hhHHHHHHHhC
Q 000556 1067 GRH---SCQLISYFEAI 1080 (1426)
Q Consensus 1067 ~~~---~~~~~~yf~~~ 1080 (1426)
... ...+-.|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 12334556665
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-53 Score=542.25 Aligned_cols=202 Identities=24% Similarity=0.331 Sum_probs=163.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|||+.|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 478999988763 3469999999999999999999999999999999999865 34799988 4321
Q ss_pred CcccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000556 908 KQETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSgGq 985 (1426)
.+||++|+. .+++.+||.|++.+..... .... ....+.++++.+++. +..++.+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVNG--RPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---cccc--hHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5778899999998643211 1111 123577889999986 4566654 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe-cCcEEEEEc
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-RGGQEIYVG 1064 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~-~gg~~v~~G 1064 (1426)
||||+||++|+.+|++|||||||+|||..+...+.+.|+++ +.|||++||+.. .+...+|++++++ +|.-..|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999986 4778899999997 544445666
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 54
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=503.84 Aligned_cols=450 Identities=22% Similarity=0.348 Sum_probs=350.1
Q ss_pred CcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCC
Q 000556 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDN 236 (1426)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~ 236 (1426)
+....++|+|||+.++|||+++|+|.||||||||+|+|+|.++|+ +|+|.+||++.....++ .-|+.|.|+..
T Consensus 17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~ 93 (500)
T COG1129 17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELS 93 (500)
T ss_pred EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechh
Confidence 335578999999999999999999999999999999999999998 99999999988765553 45889999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
+.|+|||.|||.++........ .+ +..+....+..+|+.+|++...++.|
T Consensus 94 L~p~LsVaeNifLgre~~~~~g---~i---------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v 143 (500)
T COG1129 94 LVPNLSVAENIFLGREPTRRFG---LI---------------------------DRKAMRRRARELLARLGLDIDPDTLV 143 (500)
T ss_pred ccCCccHHHHhhcccccccCCC---cc---------------------------CHHHHHHHHHHHHHHcCCCCChhhhh
Confidence 9999999999988754322000 00 01122345677899999975578888
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
|+ ||+||||-|.||||+..++++++|||||+.|+...+..+++.++++.. ++..||.++|..+|++++||+|.
T Consensus 144 ~~-----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~Drit 216 (500)
T COG1129 144 GD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRIT 216 (500)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEE
Confidence 74 999999999999999999999999999999999999999999999863 56777889999999999999999
Q ss_pred EecCCeEEEecCh-hhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhH
Q 000556 397 LLSDGQIVYQGPR-ELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKIS 475 (1426)
Q Consensus 397 lL~~G~iv~~G~~-~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (1426)
||.||+.+..++. ++. +.++..+
T Consensus 217 VlRDG~~v~~~~~~~~~--------------------------------------------~~~~lv~------------ 240 (500)
T COG1129 217 VLRDGRVVGTRPTAAET--------------------------------------------SEDELVR------------ 240 (500)
T ss_pred EEeCCEEeeecccccCC--------------------------------------------CHHHHHH------------
Confidence 9999999887652 211 0000000
Q ss_pred HhhcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccc
Q 000556 476 DELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGG 555 (1426)
Q Consensus 476 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~ 555 (1426)
T Consensus 241 -------------------------------------------------------------------------------- 240 (500)
T COG1129 241 -------------------------------------------------------------------------------- 240 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHH
Q 000556 556 IYAGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGR 635 (1426)
Q Consensus 556 ~~~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ 635 (1426)
.|+|
T Consensus 241 ---------------------------------------------------------------------~MvG------- 244 (500)
T COG1129 241 ---------------------------------------------------------------------LMVG------- 244 (500)
T ss_pred ---------------------------------------------------------------------HhhC-------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchh
Q 000556 636 FFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIG 715 (1426)
Q Consensus 636 ff~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g 715 (1426)
.....
T Consensus 245 -----------------------------------------------------------------r~~~~---------- 249 (500)
T COG1129 245 -----------------------------------------------------------------RELED---------- 249 (500)
T ss_pred -----------------------------------------------------------------cchhh----------
Confidence 00000
Q ss_pred HHHhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcc
Q 000556 716 VQVLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDI 795 (1426)
Q Consensus 716 ~~~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1426)
.| +
T Consensus 250 --------------------------------------~~-------------------------~-------------- 252 (500)
T COG1129 250 --------------------------------------LF-------------------------P-------------- 252 (500)
T ss_pred --------------------------------------hc-------------------------c--------------
Confidence 00 0
Q ss_pred cCCCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEecc
Q 000556 796 SGRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGV 875 (1426)
Q Consensus 796 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~ 875 (1426)
. . ... ...+..+++++++.. ..++||||++++||++||-|-
T Consensus 253 -------------~-~--~~~------~~~~~~l~v~~l~~~-----------------~~~~dvSf~vr~GEIlGiaGL 293 (500)
T COG1129 253 -------------E-P--PEE------GIGEPVLEVRNLSGG-----------------GKVRDVSFTVRAGEILGIAGL 293 (500)
T ss_pred -------------c-c--ccc------CCCCcEEEEecCCCC-----------------CceeCceeEEeCCcEEEEecc
Confidence 0 0 000 000112445544311 157999999999999999999
Q ss_pred CCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCCCCHHHHHHHHHHhcCC-C-C
Q 000556 876 SGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPFVTVYESLLYSAWLRLP-P-E 946 (1426)
Q Consensus 876 sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~lTv~e~l~f~a~lr~~-~-~ 946 (1426)
=|||+|-|+++|.|... ...|+|.+||.+.... ..+.-++||+.+- -+++.++|.+|+.++...+.. . -
T Consensus 294 vGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~ 371 (500)
T COG1129 294 VGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGL 371 (500)
T ss_pred ccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccc
Confidence 99999999999999554 3479999999976543 2345689999874 467889999999887332322 1 2
Q ss_pred CCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q 000556 947 VDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025 (1426)
Q Consensus 947 ~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~ 1025 (1426)
.+....++.+++..+.+++.... +.. +..||||.+|+|.|||.|..+|+||+|||||.|+|.-+..+|.++|++
T Consensus 372 i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~ 446 (500)
T COG1129 372 IDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE 446 (500)
T ss_pred cChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHH
Confidence 45555566789999999987532 233 468999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 1026 ~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
++++|++||++|-+.. |+..+||||++|++ |+++-
T Consensus 447 lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~ 481 (500)
T COG1129 447 LAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVG 481 (500)
T ss_pred HHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEE
Confidence 9999999999999985 89999999999986 67764
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-52 Score=526.62 Aligned_cols=200 Identities=20% Similarity=0.283 Sum_probs=158.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|...+ .+|+|.+++
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~--- 570 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSA--- 570 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECC---
Confidence 488999998873 123599999999999999999999999999999999998653 479998865
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqr 986 (1426)
+..+||++|+.. +.+++.++..+......+. .. ++.++++++.+++.+ ..+.. +..||||||
T Consensus 571 -----~~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 571 -----KVRMAVFSQHHV--DGLDLSSNPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred -----ceeEEEEecccc--ccCCcchhHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 235899999752 3456666543221111111 11 245788999999974 45554 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEE-EEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI-YVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v-~~G~ 1065 (1426)
|||+||++|+.+|++|+|||||+|||+.+...+.+.|++. +.|||+++|++. .+...+|++++|++ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888765 349999999986 47788999999986 6777 6675
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=499.21 Aligned_cols=499 Identities=25% Similarity=0.305 Sum_probs=336.7
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1426)
..+++++|+|+.+.+|+.++|+|+||||||||||+|+|...|+ +|+|...+ .-.++|++|++...+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 3467999999999999999999999999999999999999998 99998765 236899999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHH---HH-HHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV---YM-KAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~---~~-~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
|.+.+.-+.. ..++...+..... ...++++... +. .....++.+.+.+++.++..||++.. ++.++
T Consensus 83 v~~~v~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~- 152 (530)
T COG0488 83 VLDYVIEGFG-----ELRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS- 152 (530)
T ss_pred HHHHHHhhhH-----HHHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh-
Confidence 9999987643 1122222221111 1122221111 11 11223456677888999999999876 65554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
.||||||.||+||++|+.+|++|+|||||++||..+..++-+.|+++ .+ ++|.++|++..+-+.|++|+-+
T Consensus 153 ----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 153 ----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred ----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEe
Confidence 69999999999999999999999999999999999999998888753 34 5555899999999999999999
Q ss_pred cCCeE-EEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHh
Q 000556 399 SDGQI-VYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDE 477 (1426)
Q Consensus 399 ~~G~i-v~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1426)
+.|++ .|.|.++...+- -.....++ ...++. ...+
T Consensus 224 d~g~l~~y~Gny~~~~~~--------------------r~~~~~~~------------------~~~~~~------~~~~ 259 (530)
T COG0488 224 DRGKLTPYKGNYSSYLEQ--------------------KAERLRQE------------------AAAYEK------QQKE 259 (530)
T ss_pred cCCceeEecCCHHHHHHH--------------------HHHHHHHH------------------HHHHHH------HHHH
Confidence 99987 577877654321 00000000 000000 0000
Q ss_pred hcCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchh
Q 000556 478 LRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIY 557 (1426)
Q Consensus 478 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~ 557 (1426)
.++....+.|... . ....
T Consensus 260 -------------------------------~~~~~~~i~r~~~-----------------------~--~~~~------ 277 (530)
T COG0488 260 -------------------------------LAKEQEWIRRGKA-----------------------A--ASKA------ 277 (530)
T ss_pred -------------------------------HHHHHHHHHHHHh-----------------------c--cchH------
Confidence 0000000000000 0 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHH
Q 000556 558 AGALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFF 637 (1426)
Q Consensus 558 ~g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff 637 (1426)
|+
T Consensus 278 ------------------------------k~------------------------------------------------ 279 (530)
T COG0488 278 ------------------------------KK------------------------------------------------ 279 (530)
T ss_pred ------------------------------HH------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHH
Q 000556 638 KQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQ 717 (1426)
Q Consensus 638 ~~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~ 717 (1426)
++ ....
T Consensus 280 ----------------------------------------------------------a~----------------sr~k 285 (530)
T COG0488 280 ----------------------------------------------------------AK----------------SRIK 285 (530)
T ss_pred ----------------------------------------------------------HH----------------HHHH
Confidence 00 0000
Q ss_pred HhhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccC
Q 000556 718 VLKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISG 797 (1426)
Q Consensus 718 ~L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1426)
.++... . ...-..+. ..... ..
T Consensus 286 ~l~k~~--~-------------------------~~~~~~~~-----------------~~~~~-------------~~- 307 (530)
T COG0488 286 RLEKLE--A-------------------------RLAEERPV-----------------EEGKP-------------LA- 307 (530)
T ss_pred HHHHHH--h-------------------------hhhhcccc-----------------ccccc-------------ce-
Confidence 000000 0 00000000 00000 00
Q ss_pred CCCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCC
Q 000556 798 RNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSG 877 (1426)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sG 877 (1426)
. ..+. .. .+..+..+.++|+++.++ +++.+++++||.|.+|+.+||+||||
T Consensus 308 ----~------~f~~--~~-----~~~g~~vl~~~~~~~~y~------------~~~~l~~~~s~~i~~g~riaiiG~NG 358 (530)
T COG0488 308 ----F------RFPP--PG-----KRLGKLVLEFENVSKGYD------------GGRLLLKDLSFRIDRGDRIAIVGPNG 358 (530)
T ss_pred ----e------eccC--Cc-----ccCCCeeEEEeccccccC------------CCceeecCceEEecCCCEEEEECCCC
Confidence 0 0000 00 011124689999998874 23579999999999999999999999
Q ss_pred CchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 000556 878 AGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFI 956 (1426)
Q Consensus 878 aGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v 956 (1426)
+||||||++|+|...+ .+|.|.+.- .-.+||..|+.. +.+..|+.|.+.-.. + +.. ...+
T Consensus 359 ~GKSTLlk~l~g~~~~--~~G~v~~g~--------~v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~~----e~~~ 419 (530)
T COG0488 359 AGKSTLLKLLAGELGP--LSGTVKVGE--------TVKIGYFDQHRDELDPDKTVLEELSEGF----P-DGD----EQEV 419 (530)
T ss_pred CCHHHHHHHHhhhccc--CCceEEeCC--------ceEEEEEEehhhhcCccCcHHHHHHhhC----c-ccc----HHHH
Confidence 9999999999996653 378887742 124799999863 347779999885321 1 111 3457
Q ss_pred HHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 000556 957 EEVMELVELKPLI-QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1035 (1426)
Q Consensus 957 ~~~l~~l~L~~~~-~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 1035 (1426)
...|..+++..-. .+. ++.||||||.||.+|+.++.+|.+|+|||||++||..+...+.++|.+. ..|||+
T Consensus 420 r~~L~~f~F~~~~~~~~-----v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~ 491 (530)
T COG0488 420 RAYLGRFGFTGEDQEKP-----VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLL 491 (530)
T ss_pred HHHHHHcCCChHHHhCc-----hhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEE
Confidence 8899999997543 333 4579999999999999999999999999999999999999999999876 579999
Q ss_pred EecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 1036 TIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 1036 ~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
+|||... +-..+++++++.+ +-..|.|.
T Consensus 492 VSHDr~F-l~~va~~i~~~~~-~~~~~~g~ 519 (530)
T COG0488 492 VSHDRYF-LDRVATRIWLVED-KVEEFEGG 519 (530)
T ss_pred EeCCHHH-HHhhcceEEEEcC-ceeEcCCC
Confidence 9999875 7788999999985 44445455
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=458.00 Aligned_cols=458 Identities=21% Similarity=0.305 Sum_probs=356.8
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1426)
....+++|||++|++||+.+|+|.||+|||||+++|.|.+.|+ +|+|.++|+++.-..|+ .-||.|.||..++
T Consensus 15 ~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv 91 (501)
T COG3845 15 PGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV 91 (501)
T ss_pred CCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeeccccc
Confidence 3577999999999999999999999999999999999999999 99999999998766664 3589999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+++||.|||..+..-... .+. ...+...+++.+.+..||+--.|.+|++
T Consensus 92 ~~lTV~ENiiLg~e~~~~-~~~------------------------------~~~~~~~~i~~l~~~yGl~vdp~~~V~d 140 (501)
T COG3845 92 PTLTVAENIILGLEPSKG-GLI------------------------------DRRQARARIKELSERYGLPVDPDAKVAD 140 (501)
T ss_pred cccchhhhhhhcCccccc-ccc------------------------------CHHHHHHHHHHHHHHhCCCCCccceeec
Confidence 999999999988643210 000 0012334577889999999988888875
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
||=||||||.|-++|+.+|++|+|||||+-|-|..+.++++.|+++++ . +.+||.++|-..|+.+.+|++.||
T Consensus 141 -----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~-G~tIi~ITHKL~Ev~~iaDrvTVL 213 (501)
T COG3845 141 -----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-E-GKTIIFITHKLKEVMAIADRVTVL 213 (501)
T ss_pred -----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhhCeeEEE
Confidence 999999999999999999999999999999999999999999999875 3 555666899999999999999999
Q ss_pred cCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhcCccchhhhhcccCCCCccCCHHHHHHHHHhcccchhhHHhh
Q 000556 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHVGQKISDEL 478 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 478 (1426)
..|+++-.-++. ++ .+.+++++.
T Consensus 214 R~Gkvvgt~~~~----------------~~---------------------------~t~~ela~l-------------- 236 (501)
T COG3845 214 RRGKVVGTVDPV----------------AE---------------------------TTEEELAEL-------------- 236 (501)
T ss_pred eCCeEEeeecCC----------------CC---------------------------CCHHHHHHH--------------
Confidence 999986432210 00 011111000
Q ss_pred cCCccccccccccccCccccCcHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhhcccCCCCcccccchhH
Q 000556 479 RTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYA 558 (1426)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gt~f~~~~~~~~~~~~~~~~~ 558 (1426)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhhhhhccCCCCChhhHHHHHHHHHhhHHHHHHHHHhhhheeccccCCCHHHHHH
Q 000556 559 GALFFATAMVMFNGLAEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAGRFFK 638 (1426)
Q Consensus 559 g~lf~~l~~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~ay~la~~l~~iP~~~~~~~i~~~i~Y~~~gl~~~~~~ff~ 638 (1426)
|+|
T Consensus 237 -------------------------------------------------------------------MvG---------- 239 (501)
T COG3845 237 -------------------------------------------------------------------MVG---------- 239 (501)
T ss_pred -------------------------------------------------------------------hcC----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccchhhcccccccccchhhhhhcHHHHHHHHHHHHHhcCCcccccCCCCccchhHHH
Q 000556 639 QYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYWCSPMSYAQNAIVANEFLGYSWKKFTPNSYESIGVQV 718 (1426)
Q Consensus 639 ~~l~~~l~~~~~~~l~~~iaa~~~s~~~a~~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~g~~~ 718 (1426)
.++
T Consensus 240 -----------------------------------------------------------------------------~~v 242 (501)
T COG3845 240 -----------------------------------------------------------------------------REV 242 (501)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 000
Q ss_pred hhccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeeccccccccccccccccccccCCCCCCcccCC
Q 000556 719 LKSRGFFAHAYWYWLGLGALFGFILLFNLGFTMAITFLNQLEKPRAVITEESESNKQDNRIRGTVQLSARGESGEDISGR 798 (1426)
Q Consensus 719 L~~~~~~~~~~~~w~~~g~l~~~~v~f~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1426)
. .. ..
T Consensus 243 ~------------------------------------------------------------~~-------------~~-- 247 (501)
T COG3845 243 V------------------------------------------------------------LR-------------VV-- 247 (501)
T ss_pred c------------------------------------------------------------cc-------------cc--
Confidence 0 00 00
Q ss_pred CCCcchhhhhcccCCCCCCCCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCC
Q 000556 799 NSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGA 878 (1426)
Q Consensus 799 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGa 878 (1426)
..+...+ +..+.++|++..-+. ....+++|||++++||++||.|..|-
T Consensus 248 --------------~~~~~pg------~~vL~V~~L~v~~~~------------~~~~v~~vs~~Vr~GEIvGIAGV~GN 295 (501)
T COG3845 248 --------------KPPSTPG------EVVLEVEDLSVKDRR------------GVTAVKDVSFEVRAGEIVGIAGVAGN 295 (501)
T ss_pred --------------cCCCCCC------CeEEEEeeeEeecCC------------CCceeeeeeeEEecCcEEEEEecCCC
Confidence 0000000 124777777755332 13579999999999999999999999
Q ss_pred chhHHHhhhcCCCCCceEEEEEEEcCccC-C---cc-cccceEEEeccCCC---CCCCCCHHHHHHHHHHhcC----CCC
Q 000556 879 GKTTLMDVLSGRKTGGYITGNITISGYPK-K---QE-TFARISGYCEQNDI---HSPFVTVYESLLYSAWLRL----PPE 946 (1426)
Q Consensus 879 GKTTLl~~L~g~~~~~~~~G~i~i~g~~~-~---~~-~~~~~~gyv~q~~~---~~~~lTv~e~l~f~a~lr~----~~~ 946 (1426)
|-+.|+++|+|..+. .+|+|.++|.+. . .. ..+.-++|||++.. +.+.+|+.||+.+...-+- ..-
T Consensus 296 GQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~ 373 (501)
T COG3845 296 GQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGF 373 (501)
T ss_pred CHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccc
Confidence 999999999997653 349999999986 2 21 23346899999864 3578999999987643221 112
Q ss_pred CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q 000556 947 VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1426)
Q Consensus 947 ~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~ 1026 (1426)
.+....+++..++++.++........ ..+.||||++||+-+||+|..+|++|+..+||.|||..+.+.|.+.|.+.
T Consensus 374 l~~~~i~~~a~~li~~fdVr~~~~~~----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~ 449 (501)
T COG3845 374 LDRRAIRKFARELIEEFDVRAPSPDA----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLEL 449 (501)
T ss_pred cCHHHHHHHHHHHHHHcCccCCCCCc----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHH
Confidence 45566777889999999987332211 24689999999999999999999999999999999999999999999999
Q ss_pred HhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1027 ~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
++.|+.|++++-+.. |+++++|+|.+|.+ |+++...+..
T Consensus 450 r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~ 488 (501)
T COG3845 450 RDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPE 488 (501)
T ss_pred HhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceecccccc
Confidence 999999999999997 89999999999985 7888777654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=363.75 Aligned_cols=214 Identities=26% Similarity=0.381 Sum_probs=188.8
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|++.++ +...+|+|||++|++||+++|+|||||||||||++|.+... +.+|+|.++|.+..
T Consensus 3 i~i~~l~K~f-------------g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~ 67 (240)
T COG1126 3 IEIKNLSKSF-------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVG 67 (240)
T ss_pred EEEEeeeEEe-------------CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEecc
Confidence 6677887666 45789999999999999999999999999999999999766 45899999997543
Q ss_pred c----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 Q----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
. ...|+.+|+|+|+..+||.+||.||+.++-..- ...++++.++...+.|+.+||.+.+|..+ ..||||
T Consensus 68 ~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGG 140 (240)
T COG1126 68 DKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGG 140 (240)
T ss_pred chhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcH
Confidence 2 346788999999999999999999998864322 23456777788899999999999999884 589999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|||||+|||||+.+|+++++|||||+|||+...++.+.+++++++|.|.||+||.... .-+.+|||+.|++ |+++..|
T Consensus 141 QqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd~-G~iie~g 218 (240)
T COG1126 141 QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMDQ-GKIIEEG 218 (240)
T ss_pred HHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEeeC-CEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999875 6688999999985 7899888
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 219 ~p 220 (240)
T COG1126 219 PP 220 (240)
T ss_pred CH
Confidence 75
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=396.12 Aligned_cols=202 Identities=20% Similarity=0.273 Sum_probs=156.0
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..+.++|+++.++. +..++++++|-+.+++.+|++||||+||||||+++.|...+ ..|.|.-.-+.
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H~ 453 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSHN 453 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--ccccccccccc
Confidence 35889999988752 22589999999999999999999999999999999997663 46766433221
Q ss_pred CCcccccceEEEeccC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 907 KKQETFARISGYCEQN--DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 907 ~~~~~~~~~~gyv~q~--~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
..++..|. +.+.-..++-|++.=. .+ ++.+.+.+..++..+||....+... .+.||+|
T Consensus 454 --------~~~~y~Qh~~e~ldl~~s~le~~~~~----~~----~~~~~e~~r~ilgrfgLtgd~q~~p----~~~LS~G 513 (614)
T KOG0927|consen 454 --------KLPRYNQHLAEQLDLDKSSLEFMMPK----FP----DEKELEEMRSILGRFGLTGDAQVVP----MSQLSDG 513 (614)
T ss_pred --------cchhhhhhhHhhcCcchhHHHHHHHh----cc----ccchHHHHHHHHHHhCCCccccccc----hhhcccc
Confidence 12233332 2222345666665321 11 1234556888999999995544432 5789999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||+||.+|+.++..|.||+|||||+|||..+...+.++|.+. ..+||.++|+... |-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999888765 5689999999874 778999999999988889988
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 74
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=360.41 Aligned_cols=222 Identities=25% Similarity=0.402 Sum_probs=188.3
Q ss_pred cccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC----CccceEEEecCCCCC
Q 000556 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----VPERTAAYISQHDNH 237 (1426)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----~~~~~~~yv~Q~d~~ 237 (1426)
..+..+|+|||++|++||.++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|+..+
T Consensus 12 fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 12 FGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred eCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 34678999999999999999999999999999999999999998 99999999765421 235789999999999
Q ss_pred CCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 238 IGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
||.+||.||+..+... ++. ...+++..+..+|+.+||.+.+|.+
T Consensus 89 FPHlTvleNv~lap~~v~~~----------------------------------~k~eA~~~A~~lL~~VGL~~ka~~y- 133 (240)
T COG1126 89 FPHLTVLENVTLAPVKVKKL----------------------------------SKAEAREKALELLEKVGLADKADAY- 133 (240)
T ss_pred cccchHHHHHHhhhHHHcCC----------------------------------CHHHHHHHHHHHHHHcCchhhhhhC-
Confidence 9999999999987431 111 1123455677899999999999855
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+.+|||||||||+|||||+-+|+++++|||||+|||....++.+.++++++ .+ .+.+.++|....+.+.+|||+
T Consensus 134 ----P~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eG-mTMivVTHEM~FAr~Vadrvi 207 (240)
T COG1126 134 ----PAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMIIVTHEMGFAREVADRVI 207 (240)
T ss_pred ----ccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cC-CeEEEEechhHHHHHhhheEE
Confidence 457999999999999999999999999999999999999999999999986 34 444558899999999999999
Q ss_pred EecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHh
Q 000556 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE 435 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~ 435 (1426)
.|++|+++.+|+++++ |..|.+....+|+..
T Consensus 208 Fmd~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 208 FMDQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred EeeCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999999876 345666556666643
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=389.13 Aligned_cols=214 Identities=29% Similarity=0.436 Sum_probs=189.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|++..+. .++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~k~~~------------~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~ 70 (293)
T COG1131 5 IEVRNLTKKYG------------GDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVV 70 (293)
T ss_pred eeecceEEEeC------------CCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCc
Confidence 56677776652 136799999999999999999999999999999999998774 5899999998765
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
. ...++.+||++|++.+++.+||+|+|.|.+.++.+.. +..+++++++++.++|.+..++. +++||+|||
T Consensus 71 ~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~k 142 (293)
T COG1131 71 KEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMK 142 (293)
T ss_pred cCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHH
Confidence 4 3567789999999999999999999999999986543 44566799999999999866555 468999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-CEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+||+||+++|++|||||||+|||+.++..+++.|++++++| +||+++||+++ ++.+.||+|++|++ |++++.|+
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~ 220 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGT 220 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 99999999999999999999999999999999999999999887 89999999997 68888999999985 89999997
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 221 ~ 221 (293)
T COG1131 221 P 221 (293)
T ss_pred H
Confidence 5
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-41 Score=366.65 Aligned_cols=216 Identities=26% Similarity=0.429 Sum_probs=185.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.|+. + ++|+|||+++++|++++|+||||||||||+|+|.|... +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~~------------~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYGN------------R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEECC------------E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 5889999998851 2 59999999999999999999999999999999999766 3589999999887
Q ss_pred CcccccceEEEeccCCC---CCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 908 KQETFARISGYCEQNDI---HSPFVTVYESLLYSAWLRLP--PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~---~~~~lTv~e~l~f~a~lr~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.+..-+..+|||||... -+| +||+|-+..+..-+.. .... +..++.++++|+.+|+.+++|+.+| .||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LS 141 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELS 141 (254)
T ss_pred cccccCCeEEEcCcccccCCCCC-cCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccC
Confidence 65444568999999653 234 7999999876433221 1122 2335679999999999999999976 699
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||+|||.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+|+.|+ +++++
T Consensus 142 GGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~ 218 (254)
T COG1121 142 GGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIA 218 (254)
T ss_pred cHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEe
Confidence 99999999999999999999999999999999999999999999988999999999998 5899999999997 58999
Q ss_pred EcCCCc
Q 000556 1063 VGPLGR 1068 (1426)
Q Consensus 1063 ~G~~~~ 1068 (1426)
.|+..+
T Consensus 219 ~G~~~~ 224 (254)
T COG1121 219 SGPPEE 224 (254)
T ss_pred ccChhh
Confidence 999853
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=366.59 Aligned_cols=218 Identities=23% Similarity=0.316 Sum_probs=191.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.+++|+..+... ..+...+|+|||++|++||+.||+|+||||||||++++.+... +.+|+|.+||.++.
T Consensus 2 I~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~ 71 (339)
T COG1135 2 IELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLT 71 (339)
T ss_pred eEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecc
Confidence 5678887555421 1124579999999999999999999999999999999999766 45899999997654
Q ss_pred c------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
. ...|+.+|+++|+..++...||+||+.|...+.. .++++++++|.++++.+||.+.++.. +.+||
T Consensus 72 ~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLS 143 (339)
T COG1135 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLS 143 (339)
T ss_pred cCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcC
Confidence 3 2357889999999999999999999999877653 56888999999999999999998887 46899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
|||||||+|||||+.+|+||++|||||+|||.+...|.+.|+++.++ |.||++++|++. -+-+.|||+.+|++ |+++
T Consensus 144 GGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~-G~lv 221 (339)
T COG1135 144 GGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQ-GRLV 221 (339)
T ss_pred cchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeC-CEEE
Confidence 99999999999999999999999999999999999999999999765 999999999986 47789999999985 8999
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
..|+.
T Consensus 222 E~G~v 226 (339)
T COG1135 222 EEGTV 226 (339)
T ss_pred EeccH
Confidence 99986
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=358.37 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=181.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++++++.+. ...+|+|||++|.+||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v 67 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPV 67 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCccc
Confidence 467788887764 35799999999999999999999999999999999998774 589999999887
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
.. ....+|||+|++.++|..||+||+.|+...+. .+++++.++++++++.+||.+..|.. +..|||||||
T Consensus 68 ~~--p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQ 137 (248)
T COG1116 68 TG--PGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQ 137 (248)
T ss_pred CC--CCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHH
Confidence 32 34568999999999999999999999876653 34566677899999999999999987 4689999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
||+|||||+.+|+||+||||.+.||+.|+..+++.|.++.+ .++||+++||+.. |...+.|||++|..+
T Consensus 138 RVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 138 RVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999999875 4899999999997 678899999999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=351.79 Aligned_cols=230 Identities=26% Similarity=0.371 Sum_probs=198.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+++++|+.+. +.+.+++|||++|++||+++||||||+||||||++|.|...+ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~f-------------G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKSF-------------GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeeec-------------CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 58889988765 457899999999999999999999999999999999998874 489999999986
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000556 908 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSG 980 (1426)
Q Consensus 908 ~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 980 (1426)
.+. ..++.+|+++|.-.+|..+||+||+.|.. |.....+++..++.+..-|+.+||... .+.. +.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 542 34677999999999999999999999853 334456777778888889999999987 5555 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
||||++||++|||||+.+|+|||+||||+||||.++..+-++|+++.+. |.|++++|||.. +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999877 999999999997 69999999999996 79
Q ss_pred EEEEcCCCcc----hhHHHHHHHhCC
Q 000556 1060 EIYVGPLGRH----SCQLISYFEAIP 1081 (1426)
Q Consensus 1060 ~v~~G~~~~~----~~~~~~yf~~~~ 1081 (1426)
++..|+.++- -.-+.+||....
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~ 249 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIR 249 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCC
Confidence 9999997421 124556776543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=363.89 Aligned_cols=224 Identities=27% Similarity=0.354 Sum_probs=194.2
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1426)
....+|+|||++|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..+.. ++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 4567999999999999999999999999999999999999998 9999999988876543 478999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
++...||.||++|..+..+.. ..+.+.++.++|+.+||++.+|.+
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------------------------------k~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------------------------------KAEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------------------------------HHHHHHHHHHHHHHcCChhhhccC-
Confidence 999999999999998876532 123456788999999999988754
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+.+|||||||||+|||||+.+|+||+.|||||+|||.|+..|++.|+++.++. +.+|+.++|-++-+-+.||+|.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 55899999999999999999999999999999999999999999999987765 5556668888999999999999
Q ss_pred EecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000556 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~ 437 (1426)
+|++|+++++|+..++. .-|.+.-...|+.+..
T Consensus 214 vm~~G~lvE~G~v~~vF--------~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEVF--------ANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHhh--------cCcchHHHHHHHHhhc
Confidence 99999999999999873 4465555556665443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=365.80 Aligned_cols=217 Identities=28% Similarity=0.397 Sum_probs=187.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++.+|+++.|+ ++.+|+|+||++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 3 L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchh
Confidence 67889998884 46799999999999999999999999999999999997763 4799999999865
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEV-DSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~-~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
+ ..+++.++||||.......+||+|.+.++..-+...-. ..++..+.++++|+.+|+.+.+++.+ ..||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChh
Confidence 4 45678899999999888899999999887432221111 12233346999999999999999884 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
||||+.|||||+.+|+||+||||||.||...+.+++++++++++ +|+|||+++||++. ....||++++|++ |+++..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~ 220 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQ 220 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEee
Confidence 99999999999999999999999999999999999999999985 49999999999984 7899999999985 899999
Q ss_pred cCCC
Q 000556 1064 GPLG 1067 (1426)
Q Consensus 1064 G~~~ 1067 (1426)
|+..
T Consensus 221 G~p~ 224 (258)
T COG1120 221 GTPE 224 (258)
T ss_pred cCcc
Confidence 9864
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=354.15 Aligned_cols=193 Identities=29% Similarity=0.429 Sum_probs=168.3
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc------c-ccceEEEeccCCCCC
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE------T-FARISGYCEQNDIHS 926 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~-~~~~~gyv~q~~~~~ 926 (1426)
..+|++||++|++||++||||||||||||||++|.|...+ .+|.|.++|.+.... . .++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999998774 589999999765431 2 345799999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000556 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ-SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005 (1426)
Q Consensus 927 ~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLD 1005 (1426)
|.+||.||+.+...+... ....+++.++++++.+||.+..+ .. +..|||||||||+|||||+++|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 999999999986655422 22255667899999999997666 54 4589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 1006 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
|||.+||+.++..|++++++++++ |+|||++||+| ++...+||++.|++|+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCCe
Confidence 999999999999999999999866 99999999997 5789999999999754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=342.39 Aligned_cols=200 Identities=28% Similarity=0.387 Sum_probs=184.0
Q ss_pred EEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEeccCCCCCCCCCHH
Q 000556 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCEQNDIHSPFVTVY 932 (1426)
Q Consensus 855 ~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~q~~~~~~~lTv~ 932 (1426)
++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|++||.+... ...++.+|.++.+..++..+|++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 489999999999999999999999999999999998774 48999999998644 34678899999888899999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000556 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1426)
Q Consensus 933 e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD 1012 (1426)
|||.|.+++. +....+.+.+++++.+.++|.++.|+.+| ++|.|+||||.|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999999886 45566778889999999999999999976 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1013 ~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
..+...+.+.++++.++|++||+++|... |+..+||+++++++ |++++.|..
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~ 217 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSI 217 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCH
Confidence 99999999999999988999999999986 78889999999996 799999986
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=377.48 Aligned_cols=217 Identities=31% Similarity=0.432 Sum_probs=194.1
Q ss_pred EeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc-ceEEEecCCCCCCCCCCHHH
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRE 245 (1426)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 245 (1426)
+|+|+|+.|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|.|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998875 78999999999999999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 000556 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1426)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1426)
|+.|+.+.++... .+.+.+++++.+.|+|++..|.. +++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~-----P~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRK-----PLQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcC-----cccCC
Confidence 9999998775321 23456788899999999988854 45799
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000556 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1426)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~ 405 (1426)
|||||||++||||+.+|++++||||+|.||...+.++...|+++.+. -++++|.++|+..|+..++|+|.+|++|+|..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~-l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER-LGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh-cCCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999999999987554 45666668999999999999999999999999
Q ss_pred ecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000556 406 QGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1426)
Q Consensus 406 ~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1426)
.|++.++. ..|.+.-+|.|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4577777777753
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=349.14 Aligned_cols=211 Identities=26% Similarity=0.392 Sum_probs=186.5
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIG 239 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~ 239 (1426)
.++.+++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||.++.+... ++.+|||-|+-.+||
T Consensus 12 ~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP 88 (309)
T COG1125 12 GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88 (309)
T ss_pred CCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCC
Confidence 4577999999999999999999999999999999999999998 9999999999887654 689999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
++||.||+.+--.+.+... ++.+.+++++|+.+||+.. ...++
T Consensus 89 h~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~---~~~~R 131 (309)
T COG1125 89 HLTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPS---EYADR 131 (309)
T ss_pred CccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHH---HHhhc
Confidence 9999999998766655321 2245578999999999852 12356
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.+++|||||+|||.+||||+.+|++++||||+++|||-++.++.+.++++-+.. +++||.++|+..|++.++|+|++|+
T Consensus 132 yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l-~kTivfVTHDidEA~kLadri~vm~ 210 (309)
T COG1125 132 YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADRIAVMD 210 (309)
T ss_pred CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHh-CCEEEEEecCHHHHHhhhceEEEec
Confidence 788999999999999999999999999999999999999999999998886655 4556668999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000556 400 DGQIVYQGPRELVLE 414 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1426)
+|+++..+++++++.
T Consensus 211 ~G~i~Q~~~P~~il~ 225 (309)
T COG1125 211 AGEIVQYDTPDEILA 225 (309)
T ss_pred CCeEEEeCCHHHHHh
Confidence 999999999999874
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=349.90 Aligned_cols=213 Identities=25% Similarity=0.361 Sum_probs=189.8
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++|+||+..+. ++.+++|+|++|++||++.++|||||||||+|++|.+...+ .+|+|.+||.++.
T Consensus 2 I~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep--t~G~I~i~g~~i~ 66 (309)
T COG1125 2 IEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP--TSGEILIDGEDIS 66 (309)
T ss_pred ceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC--CCceEEECCeecc
Confidence 57888876653 45799999999999999999999999999999999998774 5899999999876
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCH
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSg 983 (1426)
. ...||.+|||-|+-.+||++||.||+.+--.+. .-++++.+++++|+|+.+||++ +.++. +..|||
T Consensus 67 ~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSG 138 (309)
T COG1125 67 DLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSG 138 (309)
T ss_pred cCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCc
Confidence 5 357889999999999999999999998765543 4567888899999999999985 66766 478999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||+|||.+||||+++|+||+||||.++|||.++..+++.++++.++ |+|||++|||.. |.+++.|||.+|+ +|+++-
T Consensus 139 GQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q 216 (309)
T COG1125 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQ 216 (309)
T ss_pred chhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEE
Confidence 9999999999999999999999999999999999999999999766 999999999997 7899999999998 478888
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
++.+
T Consensus 217 ~~~P 220 (309)
T COG1125 217 YDTP 220 (309)
T ss_pred eCCH
Confidence 8875
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=357.73 Aligned_cols=223 Identities=29% Similarity=0.454 Sum_probs=189.2
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc---cCCCCCc-cceEEEecCCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH---DMGEFVP-ERTAAYISQHDNHI 238 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~---~~~~~~~-~~~~~yv~Q~d~~~ 238 (1426)
....+++|||+.|+.||+++++|||||||||||++|+|+..|+ +|.|.+||+ +.+.... .|.+|||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3466899999999999999999999999999999999999998 999999999 5555333 47899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.|||.+||+|+.+++.. .|+ ..+.+.+++++|+.+.|++.++
T Consensus 90 ~HmtVa~NIAFGl~~~~~-------------------~p~-------------~~~~r~rv~elL~lvqL~~la~----- 132 (345)
T COG1118 90 PHMTVADNIAFGLKVRKE-------------------RPS-------------EAEIRARVEELLRLVQLEGLAD----- 132 (345)
T ss_pred ccchHHhhhhhccccccc-------------------CCC-------------hhhHHHHHHHHHHHhcccchhh-----
Confidence 999999999999876521 010 1124456788899999988766
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+++.+|||||||||++||||+..|++|+||||+++||...+..+-+.|+++.... +.+.+.++|+.+|+++++|+|++|
T Consensus 133 ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~-~~ttvfVTHD~eea~~ladrvvvl 211 (345)
T COG1118 133 RYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRL-GVTTVFVTHDQEEALELADRVVVL 211 (345)
T ss_pred cCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhh-CceEEEEeCCHHHHHhhcceEEEe
Confidence 5667899999999999999999999999999999999999999999999986544 455555899999999999999999
Q ss_pred cCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHH
Q 000556 399 SDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1426)
++|+|...||++++.+ -|...-+..|+-
T Consensus 212 ~~G~Ieqvg~p~ev~~--------~P~s~fV~~f~G 239 (345)
T COG1118 212 NQGRIEQVGPPDEVYD--------HPASRFVARFLG 239 (345)
T ss_pred cCCeeeeeCCHHHHhc--------CCCccceecccc
Confidence 9999999999999853 455555555543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=378.01 Aligned_cols=223 Identities=31% Similarity=0.430 Sum_probs=198.1
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc-ceEEEecCCCCCCCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lT 242 (1426)
+..+|+|+|+.|++||+++|+|||||||||||++|||...|+ +|+|.++|+++....++ |.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 567999999999999999999999999999999999999998 99999999999988774 78999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.|+.+.++... ..+.+.+++++|+.++|++.++ +.+.
T Consensus 94 V~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~-----R~p~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFAD-----RKPH 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhh-----hChh
Confidence 9999999987443111 1124457889999999998776 4456
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
+|||||||||+|||||+.+|++|+||||.|+||..-+.++...|+++.+.. +.+.|.++|+..|...+.|+|++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 899999999999999999999999999999999999999999999987765 6666668999999999999999999999
Q ss_pred EEEecChhhHHHHHHhcCCCCCCCCChhHHHHhh
Q 000556 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436 (1426)
Q Consensus 403 iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v 436 (1426)
|...|+++++ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4568888888888654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-40 Score=346.24 Aligned_cols=220 Identities=26% Similarity=0.329 Sum_probs=187.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|++-.|+ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 478888887764 35689999999999999999999999999999999999765 4589999999764
Q ss_pred Cc------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000556 908 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-----PEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976 (1426)
Q Consensus 908 ~~------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 976 (1426)
.. ..+++.+||++|+..+.+.++|.+|+..+..-+.+ -....++.+..+-++|+.+|+.+.+.+..
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 43 23577899999999999999999999876432211 12233344456778999999999888874
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
..|||||+|||+|||||+.+|+||+-|||+++||+.++..||+.|++++++ |.|||++.||... ..++|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 479999999999999999999999999999999999999999999999765 9999999999864 568999999998
Q ss_pred cCcEEEEEcCCCc
Q 000556 1056 RGGQEIYVGPLGR 1068 (1426)
Q Consensus 1056 ~gg~~v~~G~~~~ 1068 (1426)
+ |+++|.||..+
T Consensus 223 ~-G~ivfDg~~~e 234 (258)
T COG3638 223 A-GRIVFDGPASE 234 (258)
T ss_pred C-CcEEEeCChhh
Confidence 5 89999999854
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=373.48 Aligned_cols=212 Identities=33% Similarity=0.469 Sum_probs=184.5
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC--CccceEEEecCCCCCCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--VPERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 241 (1426)
++.+|+|||+.|++|++++|+||||||||||||+|+|.+.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 478999999999999999999999999999999999999997 99999999887653 2357899999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+|||.|.+.+.+.... ....+++++++.+||++.+++ .+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~-----~~ 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANK-----KV 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCc-----ch
Confidence 999999999988754210 122457889999999984443 45
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
++||+|||||++||.||+++|+++||||||+|||+.++.++.+.|+++++. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 679999999999999999999999999999999999999999999999864 4355555778889999999999999999
Q ss_pred eEEEecChhhHHHHHHh
Q 000556 402 QIVYQGPRELVLEFFES 418 (1426)
Q Consensus 402 ~iv~~G~~~~~~~~F~~ 418 (1426)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999988765543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=343.99 Aligned_cols=211 Identities=25% Similarity=0.358 Sum_probs=180.7
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1426)
.++.|++|||+.|++||+++|+|||||||||||++|.|+++|+ +|+|.++|.++..... ++.+|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4577999999999999999999999999999999999999998 9999999999876543 367999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
+|..+||+||+.|..+-... +|. ...+..+..-|+..||... +
T Consensus 96 LFssltV~eNVafplre~~~-------------------lp~--------------~~i~~lv~~KL~~VGL~~~----~ 138 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTK-------------------LPE--------------SLIRELVLMKLELVGLRGA----A 138 (263)
T ss_pred cccccchhHhhheehHhhcc-------------------CCH--------------HHHHHHHHHHHHhcCCChh----h
Confidence 99999999999997653211 110 1122334555788899854 2
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
.+.++.+||||+|||+++|||++.+|+++|+||||+||||.++..+.+.++++.+..+ .+++.++|+.++++..+|+|+
T Consensus 139 ~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Drv~ 217 (263)
T COG1127 139 ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADRVA 217 (263)
T ss_pred hhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhceEE
Confidence 3567789999999999999999999999999999999999999999999999887655 445558999999999999999
Q ss_pred EecCCeEEEecChhhHHH
Q 000556 397 LLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1426)
+|.+|+|+.+|+++++.+
T Consensus 218 ~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 218 VLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEeCCEEEEeCCHHHHHh
Confidence 999999999999999864
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=360.91 Aligned_cols=210 Identities=34% Similarity=0.469 Sum_probs=181.4
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCCCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE 240 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 240 (1426)
+++||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.++..+ |.++||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 467999999999999999999999999999999999999998 99999999998877653 789999999888889
Q ss_pred CCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 241 MTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
+||+|-+.++..- ++. .+. ...+....++..|+.+|+.+.++..+.
T Consensus 91 ~tV~d~V~~GR~p~~~~-------------------~~~------------~~~~D~~~v~~aL~~~~~~~la~r~~~-- 137 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-------------------FGR------------PSKEDEEIVEEALELLGLEHLADRPVD-- 137 (258)
T ss_pred cEEeehHhhcCCccccc-------------------ccC------------CCHhHHHHHHHHHHHhCcHHHhcCccc--
Confidence 9999999987431 110 000 011123367888999999999987664
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.|||||||||.||+||+++|++|+||||||+||...+.++++.++++++.. +.+||.++|+.+.+..+||++++|+
T Consensus 138 ---~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk 213 (258)
T COG1120 138 ---ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLK 213 (258)
T ss_pred ---ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 699999999999999999999999999999999999999999999998754 4555557889999999999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|+++.+|++++++
T Consensus 214 ~G~i~a~G~p~evl 227 (258)
T COG1120 214 DGKIVAQGTPEEVL 227 (258)
T ss_pred CCeEEeecCcchhc
Confidence 99999999998775
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=395.19 Aligned_cols=216 Identities=23% Similarity=0.347 Sum_probs=187.3
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++++|++..++. +++.+|+|||+.+++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 46889999887731 235699999999999999999999999999999999998763 48999999988
Q ss_pred CCcc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 907 KKQE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 907 ~~~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
+... ..++.+|||+|++.+++.+||+|++.|.++++. ...++.+++++++++.+||.+..++.+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 6532 345679999999999999999999999876653 223344567899999999998888874 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|++++ +|+|||+++|++. ++...+||+++|++ |+++..|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999986 57788999999986 7899888
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 74
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=347.25 Aligned_cols=192 Identities=26% Similarity=0.374 Sum_probs=170.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
..+|+|+|++|.+||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++ ..+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 67999999999999999999999999999999999999998 99999999987 34567899999999999999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
||+.|+.+..+... .+...+++..|+.+||.+..|. .+++|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~-----~P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDK-----YPHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhc-----Ccccc
Confidence 99999987664211 1123367889999999988874 56689
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.+|+.++|+.+|+..++|+|++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999998887754 455666899999999999999999984
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=328.91 Aligned_cols=212 Identities=25% Similarity=0.330 Sum_probs=183.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.|+||+-.|.. ...+|+||||.|++||++-|+|||||||||||++|.+... +..|+|.++|+++.
T Consensus 2 I~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~ 67 (223)
T COG2884 2 IRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLS 67 (223)
T ss_pred eeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecc
Confidence 578888766643 3569999999999999999999999999999999999765 35899999999865
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. ..+|.+|+|+|+..+.+..||+||+.|...... .+..+.+++|.++|+.+||.+.++.+ +..||
T Consensus 68 ~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LS 139 (223)
T COG2884 68 RLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLS 139 (223)
T ss_pred cccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccC
Confidence 42 257889999999999999999999999776652 34566778899999999999998887 46899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhh-cceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~-fD~v~ll~~gg~~v 1061 (1426)
|||||||+||||++.+|++|+.||||.+||+..+..||+++.++.+.|.|||+.||+. ++.+. --+++.|.+ |+++
T Consensus 140 GGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~ 216 (223)
T COG2884 140 GGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLV 216 (223)
T ss_pred chHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEE
Confidence 9999999999999999999999999999999999999999999998999999999995 45544 467888875 7887
Q ss_pred EEcC
Q 000556 1062 YVGP 1065 (1426)
Q Consensus 1062 ~~G~ 1065 (1426)
....
T Consensus 217 ~d~~ 220 (223)
T COG2884 217 RDES 220 (223)
T ss_pred eccc
Confidence 6554
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=353.25 Aligned_cols=206 Identities=28% Similarity=0.440 Sum_probs=185.8
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCc---cCCc-ccccceEEEeccCCCCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY---PKKQ-ETFARISGYCEQNDIHSP 927 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~q~~~~~~ 927 (1426)
+...+++|||+.|+.||++||+|||||||||||++|||..++ ..|.|.+||. +.++ ....|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 345789999999999999999999999999999999998874 4899999998 5544 334678999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000556 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1426)
Q Consensus 928 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEP 1007 (1426)
.+||.+|+.|+..++ ...++....+.+++++|+.++|++..+.. +.+|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998777 33455667788899999999999999887 468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 1008 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
.++||+.-+..+.+-|+++.++ |.|+|++|||+. |+++.+|||++|++ |++.-.||.+
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999876 999999999996 79999999999986 7888888863
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=366.80 Aligned_cols=214 Identities=27% Similarity=0.403 Sum_probs=192.4
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|++-.+. +..+|+|||++|++||.++|+|||||||||||++|||... +.+|+|.|+|.+.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEC
Confidence 477888876663 2229999999999999999999999999999999999876 4589999999988
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
+. ....|.+++|+|+..++|++||+||+.|+.+.+ ..++++.+++|+++.+.++|.+..|++ +++||||||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQr 139 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQR 139 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhH
Confidence 76 345688999999999999999999999998776 345677888999999999999999998 468999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+++|++++||||.|+||++.+..+...|+++.++ |.|+|.+|||.. |...++||+.+|+ +|++.-.|.
T Consensus 140 QRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~ 217 (338)
T COG3839 140 QRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGT 217 (338)
T ss_pred HHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCC
Confidence 9999999999999999999999999999999999999998765 899999999985 7999999999998 589999887
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 218 p 218 (338)
T COG3839 218 P 218 (338)
T ss_pred h
Confidence 6
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=366.89 Aligned_cols=214 Identities=28% Similarity=0.409 Sum_probs=187.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|++..+. ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 588999988773 34699999999999999999999999999999999998763 489999999986
Q ss_pred Cc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 908 KQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
.. ...++.+|||+|++.+++.+||+|++.|.+.++. .+..+..++++++++.++|.+..++.+ ++||+||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 53 2346779999999999999999999998766542 233444556889999999998888875 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||++||+||+++|++|||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999997 68889999999986 79999998
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=346.44 Aligned_cols=208 Identities=27% Similarity=0.414 Sum_probs=175.2
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCC--CCCCCCCH
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTV 243 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d--~~~~~lTV 243 (1426)
++|+|||+.+++|++++|+||||||||||+|+|+|.++|. +|+|.++|.+......+..+|||||.. .+-..+||
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV 94 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITV 94 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCCcCH
Confidence 4999999999999999999999999999999999999998 999999999887766667899999953 33344799
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+|.+..+..-+. .+ .... ..+.+..+++.|+.+|+.+.+|..+| .
T Consensus 95 ~d~V~~g~~~~~--g~---~~~~-------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~-----~ 139 (254)
T COG1121 95 KDVVLLGRYGKK--GW---FRRL-------------------------NKKDKEKVDEALERVGMEDLRDRQIG-----E 139 (254)
T ss_pred HHHHHccCcccc--cc---cccc-------------------------cHHHHHHHHHHHHHcCchhhhCCccc-----c
Confidence 999998732211 00 0000 01124567889999999999998887 4
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|++.|+++.+. +.+|+.++|+...+.+.||+|+.|+ +++
T Consensus 140 LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln-~~~ 216 (254)
T COG1121 140 LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLN-RHL 216 (254)
T ss_pred cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEc-Cee
Confidence 9999999999999999999999999999999999999999999998764 5556668999999999999999995 478
Q ss_pred EEecChhhHHH
Q 000556 404 VYQGPRELVLE 414 (1426)
Q Consensus 404 v~~G~~~~~~~ 414 (1426)
++.|+++++.+
T Consensus 217 ~~~G~~~~~~~ 227 (254)
T COG1121 217 IASGPPEEVLT 227 (254)
T ss_pred EeccChhhccC
Confidence 89999988753
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-39 Score=331.65 Aligned_cols=218 Identities=22% Similarity=0.318 Sum_probs=188.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCC---CCceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 904 (1426)
.++.+|++..|. ++++|+|||+.|++++++|+||||||||||||++|-... ++-.++|+|.++|
T Consensus 7 ~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 578889988773 467999999999999999999999999999999998743 3446889999999
Q ss_pred ccCCcc-----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQE-----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~~-----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++... ..|+.+|.|+|.+.-|| +|++||+.|+.++..-.+ ++-++.|++.|+...|++......... ..
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s-a~ 148 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS-AL 148 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC-cc
Confidence 876542 46888999999999999 999999999988764332 667788999999999987544333322 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
+|||||+|||||||+|+-+|+||+||||||+|||.+...|-+++.+++ +.-|||++||.+. ......|+...+.. |+
T Consensus 149 ~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~ 225 (253)
T COG1117 149 GLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GE 225 (253)
T ss_pred CCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cE
Confidence 799999999999999999999999999999999999999999999997 4699999999986 57788999999986 79
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+|.+|+.
T Consensus 226 LvE~g~T 232 (253)
T COG1117 226 LVEFGPT 232 (253)
T ss_pred EEEEcCH
Confidence 9999997
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=341.71 Aligned_cols=196 Identities=29% Similarity=0.432 Sum_probs=167.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1426)
..+|+++|+.|++||+++|+|||||||||||++|+|...|+ +|.|.++|.++..+.. ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 68999999999999999999999999999999999999998 9999999998876643 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
+|++||+||+.+...+.+.... +.+..++.+++.+||.+..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~---- 136 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLL---- 136 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhc----
Confidence 9999999999988766543210 12234677899999997665
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..+..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++.. +++|+.++|+ +++...|||++.
T Consensus 137 ~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~i~ 214 (226)
T COG1136 137 KKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRVIE 214 (226)
T ss_pred cCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEEEE
Confidence 13345799999999999999999999999999999999999999999999998754 4445546665 577889999999
Q ss_pred ecCCeE
Q 000556 398 LSDGQI 403 (1426)
Q Consensus 398 L~~G~i 403 (1426)
|.+|++
T Consensus 215 l~dG~~ 220 (226)
T COG1136 215 LKDGKI 220 (226)
T ss_pred EeCCee
Confidence 999994
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=328.24 Aligned_cols=206 Identities=32% Similarity=0.373 Sum_probs=182.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
.++++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+..+.. .++.+|.++.+..++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 44899999999999999999999999999999999999999 999999999875432 3578999998888999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
+||||.|-+++.+.. + .+.+.+++.+.+.|+|.+|.|+.+|
T Consensus 92 ~rEnl~~Fa~L~~l~----------~------------------------~~~kari~~l~k~l~l~~~~~rRv~----- 132 (245)
T COG4555 92 ARENLKYFARLNGLS----------R------------------------KEIKARIAELSKRLQLLEYLDRRVG----- 132 (245)
T ss_pred HHHHHHHHHHHhhhh----------h------------------------hHHHHHHHHHHHHhChHHHHHHHHh-----
Confidence 999999988765431 1 2245678889999999999999998
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
++|-|+||||+|||||+++|+++++||||||||..+...+.+.++++. ..+.+|+..+|..+|+.++||+|++|++|+
T Consensus 133 ~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 133 EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 599999999999999999999999999999999999999999999874 335566667899999999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+.+++..
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999987754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=365.90 Aligned_cols=215 Identities=27% Similarity=0.385 Sum_probs=192.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|++-.+ ++..+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.++|.++
T Consensus 5 ~l~i~~v~k~y-------------g~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i 69 (352)
T COG3842 5 ALEIRNVSKSF-------------GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDI 69 (352)
T ss_pred eEEEEeeeeec-------------CCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEC
Confidence 57888887665 346799999999999999999999999999999999998774 489999999998
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
... ..+|.+|+|+|+..+||++||+||+.|+.+++ ....+++.+++|+++++.++|.+..++.+ ..||||||
T Consensus 70 ~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQq 142 (352)
T COG3842 70 TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQ 142 (352)
T ss_pred CCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHH
Confidence 763 35788999999999999999999999987643 33455667889999999999999998874 68999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+||||.|+||..-+..++..|+++.++ |.|.|++|||.. |...+.|||.+|++ |++.-.|+
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gt 220 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGT 220 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCC
Confidence 9999999999999999999999999999999999999998765 999999999986 78899999999985 78988887
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 221 P 221 (352)
T COG3842 221 P 221 (352)
T ss_pred H
Confidence 6
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=332.73 Aligned_cols=217 Identities=26% Similarity=0.376 Sum_probs=181.6
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDN 236 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~ 236 (1426)
..+++|+|||+.|++|||++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 3467999999999999999999999999999999999999998 9999999988765542 468999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
+.+.+||.+|+..+..-+. +..+.+ .+..+ .+.+..+-+.|+.+|+.+.+.+..
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~sl---------fglfs---------------k~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRSL---------FGLFS---------------KEDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHHH---------hCCCC---------------HHHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999998753221 111111 11111 122345567799999999988877
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+ .|||||+|||+|||||+.+|++++-|||+++||+.++.++++.|++++...+.|+|+. +|..+-+.++||||+
T Consensus 146 ~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~n-LH~vdlA~~Y~~Rii 219 (258)
T COG3638 146 S-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVN-LHQVDLAKKYADRII 219 (258)
T ss_pred c-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEE-echHHHHHHHHhhhe
Confidence 6 5999999999999999999999999999999999999999999999988766666665 455678899999999
Q ss_pred EecCCeEEEecChhhHHH
Q 000556 397 LLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1426)
-|++|+|+|.||++++-+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999988654
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=363.37 Aligned_cols=217 Identities=23% Similarity=0.293 Sum_probs=186.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++... ....+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~~---------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQGT---------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCCC---------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 57889988774210 124699999999999999999999999999999999998763 4899999998765
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. ..++.+||++|+..+++..||+||+.|....+ ..+.++.++++.++++.+||.+..|..+ ..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 32 13567999999999999999999999875543 2344556677899999999999888764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||+++|+++ .+.+.||++++|++ |+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999875 999999999986 57789999999985 7999
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
..|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99885
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=348.39 Aligned_cols=213 Identities=24% Similarity=0.348 Sum_probs=180.9
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~ 66 (235)
T cd03261 2 ELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISG 66 (235)
T ss_pred eEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccc
Confidence 5678877763 24699999999999999999999999999999999998663 48999999987543
Q ss_pred ------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 910 ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 910 ------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
..+++.++|++|++.+++.+||.||+.+...... ..+.+..++.++++++.++|.+..++.+ ..|||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (235)
T cd03261 67 LSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSG 139 (235)
T ss_pred cChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 1245679999999999999999999988643221 1233444567889999999988777664 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~ 217 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVA 217 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999874 899999999986 57788999999985 78988
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 218 ~g~~ 221 (235)
T cd03261 218 EGTP 221 (235)
T ss_pred ecCH
Confidence 8874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=360.71 Aligned_cols=206 Identities=23% Similarity=0.331 Sum_probs=177.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1426)
.++|+|||++|++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999998 9999999998876532 45799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.|+.+..+... .+...++.++++.+||.+..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998765432110 012234677899999998877554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+..+ .+|+.++|..+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g-~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999876434 44555788889999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-37 Score=364.51 Aligned_cols=214 Identities=25% Similarity=0.359 Sum_probs=188.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|++..+. .+.+|+|+|+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 478899988763 3468999999999999999999999999999999999876 3589999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ...+|.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHH
Confidence 53 223577999999999999999999999986543 2345566778999999999999888763 58999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+|||||++||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 999999999996 68899999999986 79999998
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 219 ~ 219 (353)
T TIGR03265 219 P 219 (353)
T ss_pred H
Confidence 6
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=365.00 Aligned_cols=214 Identities=25% Similarity=0.364 Sum_probs=187.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|++..++ +++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 77888887762 12469999999999999999999999999999999999876 35899999998765
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
.. ..++.+|||+|++.++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 32 23467999999999999999999999976543 2344555677999999999999888874 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+++|++++|++ |+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999999999999999999999999998775 999999999986 68899999999985 899999986
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=359.95 Aligned_cols=215 Identities=27% Similarity=0.379 Sum_probs=187.4
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..+.++|++..++ ++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 40 ~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~ 104 (340)
T PRK13536 40 VAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVP 104 (340)
T ss_pred eeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEE
Confidence 3588999988773 34699999999999999999999999999999999998764 48999999988
Q ss_pred CCc--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 907 KKQ--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 907 ~~~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
... ...++.+||++|++.+++.+||.|++.+.+.++. .+..+..+.++++++.++|.+..++.+ +.||||
T Consensus 105 ~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G 176 (340)
T PRK13536 105 VPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGG 176 (340)
T ss_pred CCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHH
Confidence 643 2345679999999999999999999987665442 223334456788999999998888875 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++||+||+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g 254 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEc
Confidence 999999999999999999999999999999999999999999878999999999987 68889999999986 7999999
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 255 ~~ 256 (340)
T PRK13536 255 RP 256 (340)
T ss_pred CH
Confidence 85
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=361.97 Aligned_cols=214 Identities=24% Similarity=0.381 Sum_probs=188.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 488999988773 24689999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
... ..++.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 542 23577999999999999999999999986543 2345566778999999999998887763 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++.+++|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999996 68899999999986 79999998
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 221 ~ 221 (351)
T PRK11432 221 P 221 (351)
T ss_pred H
Confidence 6
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=323.58 Aligned_cols=222 Identities=25% Similarity=0.384 Sum_probs=178.2
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCCC-----ccceEEEecCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN 236 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1426)
++.+|+|||+.|+++++||++|||||||||||++|....+. ..+++|+|.++|+++.+.. .++.+|.|+|.|.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 35699999999999999999999999999999999987553 4678999999999876532 3688999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1426)
-|| +|++||+.|+.+..|... +.+. .+++..|+.-+|-+ .+|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~ld--------------------------------eiVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELD--------------------------------EIVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHH--------------------------------HHHHHHHHHhHhHHHhHHHh
Confidence 999 999999999999887533 1111 12222222222221 12211
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
++...+|||||+||++|||||+-+|+||+||||||+|||.++..|-+.+.++.+ .-+||.++|.+..+.+..|+.
T Consensus 144 --~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~t 218 (253)
T COG1117 144 --HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYT 218 (253)
T ss_pred --hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhh
Confidence 123347999999999999999999999999999999999999999999999853 445555889999999999999
Q ss_pred EEecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000556 396 ILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1426)
..+..|+++++|+.+++ |..|.++...||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 3467776666665
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=362.63 Aligned_cols=214 Identities=24% Similarity=0.335 Sum_probs=188.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEE--EEEEEcCc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT--GNITISGY 905 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~ 905 (1426)
.+.++|+++.+. +..+|+|+|+++++||+++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 578899988773 24699999999999999999999999999999999998764 36 99999998
Q ss_pred cCCcc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 906 PKKQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 906 ~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
+.... ..++.+|||+|+..++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 76432 23567999999999999999999999986543 2344556677999999999999888874 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 68899999999985 79999
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 220 ~g~~ 223 (362)
T TIGR03258 220 HGEP 223 (362)
T ss_pred EcCH
Confidence 9985
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-37 Score=339.83 Aligned_cols=210 Identities=28% Similarity=0.408 Sum_probs=177.1
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~ 66 (213)
T cd03259 2 ELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTG 66 (213)
T ss_pred eeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCc
Confidence 5677777663 2469999999999999999999999999999999999865 358999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
. ..++.++|++|++.+++.+|++|++.+..... ....+..++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 138 (213)
T cd03259 67 VPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQR 138 (213)
T ss_pred CchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHH
Confidence 2 23456899999998888999999998765432 1223344556889999999988777764 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 139 l~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 139 VALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999999764 999999999986 57788999999986 6777654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=362.42 Aligned_cols=206 Identities=25% Similarity=0.364 Sum_probs=178.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+.+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|++.++|.+||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999988 9999999998876544 4689999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.|+.+.++... .+...+++++++.+||++..+..+ +.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMPK----------------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 999999865432110 012235678899999998777554 57
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+.. +++++.++|+..++.+++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999986533 45566688888999999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=372.01 Aligned_cols=213 Identities=23% Similarity=0.432 Sum_probs=177.0
Q ss_pred CCCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCC
Q 000556 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD 235 (1426)
Q Consensus 159 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d 235 (1426)
|.| ++.+||+|+|++|+|||.|||+|||||||||+.++|...++|+ +|+|.+||+|+.+.++ ++.+|+|.|+|
T Consensus 476 P~R-p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 476 PTR-PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred CCC-CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 444 3477999999999999999999999999999999999999998 9999999999998876 48899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1426)
.+|.. ||+|||.|+.. . .+.|+...++... ...+. +.++++.+||.
T Consensus 552 vLFs~-sI~eNI~YG~~--~-----------------------~t~e~i~~AAk~A-----Nah~F---I~~~p~gY~T~ 597 (716)
T KOG0058|consen 552 VLFSG-SIRENIAYGLD--N-----------------------ATDEEIEAAAKMA-----NAHEF---ITNFPDGYNTV 597 (716)
T ss_pred eeecc-cHHHHHhcCCC--C-----------------------CCHHHHHHHHHHh-----ChHHH---HHhCccccccc
Confidence 88875 99999999864 1 1111111111110 11122 34789999999
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
||+++. .||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ ++|+++ |.|. -.+.+.+|+|
T Consensus 598 VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlv-IAHR-LSTV~~Ad~I 672 (716)
T KOG0058|consen 598 VGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLV-IAHR-LSTVRHADQI 672 (716)
T ss_pred cCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEE-Eehh-hhHhhhccEE
Confidence 999877 6999999999999999999999999999999999999999999988653 455555 5554 4677889999
Q ss_pred EEecCCeEEEecChhhHHH
Q 000556 396 ILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1426)
+++++|++++.|+++|+++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999875
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-37 Score=361.31 Aligned_cols=206 Identities=22% Similarity=0.361 Sum_probs=179.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
..+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|+..++|.+||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999998876555 3789999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.|+.+.++... .+.+..++++++.+||.+..+.. ++.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~-----~~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRY-----VDQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 999999875433211 11233567889999998877644 457
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++|+||||+++||+.++.++.+.|+++.+.. +++++.++|+..++.+++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45556688999999999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-37 Score=357.12 Aligned_cols=202 Identities=27% Similarity=0.380 Sum_probs=177.3
Q ss_pred ceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc--cccceEEEeccCCCCCCCCC
Q 000556 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE--TFARISGYCEQNDIHSPFVT 930 (1426)
Q Consensus 853 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gyv~q~~~~~~~lT 930 (1426)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45799999999999999999999999999999999998763 489999999876432 24567999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000556 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1426)
Q Consensus 931 v~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsg 1010 (1426)
|+|++.+.+.++. ......+++++++++.++|.+..++.+ +.|||||||||+||+||+++|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 233444567899999999998888774 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999878999999999986 68889999999986 799999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=359.38 Aligned_cols=208 Identities=21% Similarity=0.294 Sum_probs=179.5
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1426)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999998 9999999999876544 467999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
+++.+||+||+.|+.+..+... .+...++.++++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCCh
Confidence 9999999999999865443210 012234677899999987776554
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
..|||||||||+|||||+.+|+++||||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++..++|+|+
T Consensus 128 -----~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~ 201 (363)
T TIGR01186 128 -----DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIV 201 (363)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999886533 4455668899999999999999
Q ss_pred EecCCeEEEecChhhHHH
Q 000556 397 LLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1426)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=338.47 Aligned_cols=215 Identities=25% Similarity=0.353 Sum_probs=179.9
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 70 (220)
T cd03293 2 EVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG 70 (220)
T ss_pred eEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc
Confidence 567777766310 0114699999999999999999999999999999999998653 48999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000556 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 989 (1426)
Q Consensus 910 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 989 (1426)
.++.++|++|++.+++.+|++|++.+....+. ...+...+.++++++.++|.+..++.+ ..||||||||+
T Consensus 71 --~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl 140 (220)
T cd03293 71 --PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRV 140 (220)
T ss_pred --ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHH
Confidence 35678999999988888999999988654331 223344567889999999988777764 57999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEec-CcEEEEEcCC
Q 000556 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPL 1066 (1426)
Q Consensus 990 ~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~-gg~~v~~G~~ 1066 (1426)
+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.+|++++|++ .|+++..++.
T Consensus 141 ~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 141 ALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999999999999999999999999999865 4899999999986 57788999999985 4888887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=339.26 Aligned_cols=207 Identities=24% Similarity=0.318 Sum_probs=175.5
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++. +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 567888887731 123599999999999999999999999999999999998653 4799999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. .+++.++|++|++.+++.+||.||+.+....+. ...+..+++++++++.++|.+..++.+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 21 135679999999998899999999988654331 223344567899999999988877764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRG 214 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999999999999999999777999999999986 577789999999863
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=361.58 Aligned_cols=207 Identities=26% Similarity=0.395 Sum_probs=179.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ +|.++||+|+..+||.+||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999998 9999999998875544 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.|+.+.++... .+....++++++.+||++..|.. ++.
T Consensus 94 ~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~L~~~~~~~-----~~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMGR----------------------------------AEVAERVAELLDLVGLPGSERKY-----PGQ 134 (353)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCCchhhCC-----hhh
Confidence 999999865432110 01223567899999999887754 457
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986543 45555578888999999999999999999
Q ss_pred EEecChhhHHH
Q 000556 404 VYQGPRELVLE 414 (1426)
Q Consensus 404 v~~G~~~~~~~ 414 (1426)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999988753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=336.44 Aligned_cols=209 Identities=24% Similarity=0.412 Sum_probs=177.7
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (210)
T cd03269 2 EVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI 66 (210)
T ss_pred EEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH
Confidence 5677777663 2469999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000556 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 989 (1426)
Q Consensus 910 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 989 (1426)
..++.++|++|++.+++.+|++|++.+....+. ......++.++++++.+++.+..++.+ ..||||||||+
T Consensus 67 -~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (210)
T cd03269 67 -AARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKV 137 (210)
T ss_pred -HHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHH
Confidence 345678999999998889999999988654432 223344566889999999988777653 57999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 990 ~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 138 ~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 138 QFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999998877899999999986 57788999999986 6777654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=338.96 Aligned_cols=214 Identities=22% Similarity=0.339 Sum_probs=188.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|++|.++. ...+|+|+|+.+++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 678999998852 24799999999999999999999999999999999998764 4799999999865
Q ss_pred ----cccccceEEEeccCCCCC-CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 909 ----QETFARISGYCEQNDIHS-PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ----~~~~~~~~gyv~q~~~~~-~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
....++.+|||+|++..+ -.-||.|.+.|+..-. ..+.++.+++++++++.+|+.+.++.. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 345678899999998664 4569999999986432 455667888999999999999998876 468999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++..+ |.|||+++|+.. .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 799999999986 58888999999986 79999
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9974
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=359.06 Aligned_cols=216 Identities=24% Similarity=0.374 Sum_probs=186.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 3 L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 67888887763 24699999999999999999999999999999999998763 4799999998765
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ..++.+|||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 32 2346799999999999999999999987653211 12344555678999999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||++. ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999876 899999999986 68899999999985 79999997
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 221 ~ 221 (353)
T PRK10851 221 P 221 (353)
T ss_pred H
Confidence 5
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=325.92 Aligned_cols=206 Identities=27% Similarity=0.320 Sum_probs=177.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC----ccceEEEecCCC--CCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----PERTAAYISQHD--NHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d--~~~ 238 (1426)
.++|+|||++|.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+.+|+||+ .+-
T Consensus 20 ~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn 96 (252)
T COG1124 20 FHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN 96 (252)
T ss_pred hhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccC
Confidence 36999999999999999999999999999999999999998 999999998776543 346789999997 578
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
|..||++.|.-+.+..+... ...++.++|+.+||+...- +
T Consensus 97 P~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l----~ 136 (252)
T COG1124 97 PRRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFL----D 136 (252)
T ss_pred cchhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHH----h
Confidence 89999999987655432211 1123677899999986433 4
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.+..|||||||||+|||||..+|++|++|||||+||++...+|++.|.++.+. .+.+++.++|+..-+..+||||++|
T Consensus 137 R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~-~~lt~l~IsHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 137 RRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKE-RGLTYLFISHDLALVEHMCDRIAVM 215 (252)
T ss_pred cCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHh-cCceEEEEeCcHHHHHHHhhheeee
Confidence 566789999999999999999999999999999999999999999999998764 5566777999999999999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000556 399 SDGQIVYQGPRELVLE 414 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1426)
++|++++.++.+++.+
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999998864
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-37 Score=360.88 Aligned_cols=207 Identities=23% Similarity=0.344 Sum_probs=179.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCce--eEEEEcCccCCCCCc-cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVS--GRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~--G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 241 (1426)
..+|+|+|++|++|++++|+|||||||||||++|+|..+|+ + |+|.++|+++....+ ++.++||+|+..+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 45899999999999999999999999999999999999988 8 999999998865544 46799999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+||+.|+.+..+... .+....++++++.+||++..|+.+
T Consensus 95 tv~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~----- 135 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLP----- 135 (362)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCCh-----
Confidence 99999999875432110 012235678899999998877655
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|
T Consensus 136 ~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G 215 (362)
T TIGR03258 136 AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDG 215 (362)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999875432556666889999999999999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
+++..|+++++.
T Consensus 216 ~i~~~g~~~~~~ 227 (362)
T TIGR03258 216 RLAAHGEPQALY 227 (362)
T ss_pred EEEEEcCHHHHH
Confidence 999999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=359.18 Aligned_cols=214 Identities=22% Similarity=0.327 Sum_probs=187.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999988773 24699999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
... ..++.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 532 23567999999999999999999999976533 2344555667899999999999888874 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999865 999999999986 68899999999985 89999988
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 229 ~ 229 (375)
T PRK09452 229 P 229 (375)
T ss_pred H
Confidence 5
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.05 Aligned_cols=211 Identities=26% Similarity=0.400 Sum_probs=178.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 35678877763 2469999999999999999999999999999999999865 34899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
.. ..++.++|++|++.+++..|++||+.+....+ ....++.++.++++++.+++.+..+..+ ..|||||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 137 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQ 137 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHH
Confidence 32 22457999999998888899999998765432 1223444556889999999988877764 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++++|
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999864 899999999986 57788999999986 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=353.28 Aligned_cols=214 Identities=28% Similarity=0.379 Sum_probs=183.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.+. ++.+|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 378889988773 24699999999999999999999999999999999998653 489999999875
Q ss_pred Ccc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 908 KQE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
... ..++.+||++|++.+++.+||+|++.+.+..+ ..+.....+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 432 23567999999999999999999998755432 1233334456788999999998887774 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67789999999985 78999987
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=337.38 Aligned_cols=213 Identities=28% Similarity=0.376 Sum_probs=180.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecC
Confidence 35678877663 24699999999999999999999999999999999998653 4899999997654
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
. ...++.++|++|++.+++.+||+|++.+....+. .+.++.++.++++++.++|.+..++.+ ..||||||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 137 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMR 137 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHH
Confidence 2 2234578999999998999999999988654431 223334556899999999988777764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+
T Consensus 138 qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 215 (220)
T cd03265 138 RRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGT 215 (220)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCC
Confidence 9999999999999999999999999999999999999999876 899999999986 57788999999985 78888876
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 216 ~ 216 (220)
T cd03265 216 P 216 (220)
T ss_pred h
Confidence 4
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=318.07 Aligned_cols=206 Identities=26% Similarity=0.343 Sum_probs=183.4
Q ss_pred cCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCccc----ccceEEEeccCCCCC
Q 000556 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHS 926 (1426)
Q Consensus 851 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~ 926 (1426)
++++++++|||+.+++||++||+|||||||||.+.++.|...+ .+|+|.+||.+++... -+.-+||+||++..|
T Consensus 14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 3567899999999999999999999999999999999998764 4899999999877632 233589999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000556 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1426)
Q Consensus 927 ~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDE 1006 (1426)
..+||+||+.-....+.. +....+++++++++|+.+++.+++++.. ..||||||+|+.|||||+.+|+.++|||
T Consensus 92 r~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiLLDE 165 (243)
T COG1137 92 RKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFILLDE 165 (243)
T ss_pred hcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEEecC
Confidence 999999999876666532 2233466677899999999999999873 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1007 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|.+|+||.+...|+++++.+++.|.-|++|-|+.. |....+||.+++.+ |+++..|..
T Consensus 166 PFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p 223 (243)
T COG1137 166 PFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSP 223 (243)
T ss_pred CccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCH
Confidence 99999999999999999999999999999999998 79999999999996 799999986
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=374.18 Aligned_cols=215 Identities=27% Similarity=0.439 Sum_probs=183.9
Q ss_pred CCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcC
Q 000556 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 904 (1426)
-...++|+||+|+|+..+ +.++|+|+||+|+|||.|||+||||+||||+.++|....+ +.+|+|.+||
T Consensus 462 ~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG 529 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDG 529 (716)
T ss_pred ccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECC
Confidence 345799999999998753 4679999999999999999999999999999999998766 4589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH-------cCCccccccccc
Q 000556 905 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL-------VELKPLIQSLVG 974 (1426)
Q Consensus 905 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~-------l~L~~~~~~~vg 974 (1426)
+|+++ ..+++.+|+|.|+|.++. -||+||+.|+.. ..+.++ |+++.+. .++.+-.||.||
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~----i~~AAk~ANah~FI~~~p~gY~T~VG 599 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEE----IEAAAKMANAHEFITNFPDGYNTVVG 599 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHH----HHHHHHHhChHHHHHhCccccccccC
Confidence 99876 346789999999999986 599999999753 223322 3333332 356777899999
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEE
Q 000556 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 975 ~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll 1054 (1426)
..| ..||||||||++|||||++||+||||||+||.||+++...|+++|.++.+ ++|||+++|+.| ..+.+|+|+++
T Consensus 600 EkG-~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi 675 (716)
T KOG0058|consen 600 EKG-SQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVI 675 (716)
T ss_pred Ccc-ccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEE
Confidence 876 47999999999999999999999999999999999999999999998865 699999999976 67899999999
Q ss_pred ecCcEEEEEcCC
Q 000556 1055 KRGGQEIYVGPL 1066 (1426)
Q Consensus 1055 ~~gg~~v~~G~~ 1066 (1426)
++ |+++..|.-
T Consensus 676 ~~-G~V~E~G~h 686 (716)
T KOG0058|consen 676 DK-GRVVEMGTH 686 (716)
T ss_pred cC-CeEEecccH
Confidence 86 799999863
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=359.57 Aligned_cols=218 Identities=28% Similarity=0.377 Sum_probs=184.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
.++|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|.++....+ ++.++||+|++.++|.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 45899999999999999999999999999999999999988 9999999998876544 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.|+.+.++... .+....++++++.+||++..+..+ ..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999865332110 011234678899999998777554 57
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+.. ++++|.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45556688999999999999999999999
Q ss_pred EEecChhhHHHHHHhcCCCCCCCCChhHHH
Q 000556 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433 (1426)
Q Consensus 404 v~~G~~~~~~~~F~~~Gf~cp~~~~~adfl 433 (1426)
+..|+++++.+ .|....+++|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999988743 45544455554
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=356.68 Aligned_cols=217 Identities=22% Similarity=0.295 Sum_probs=184.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|++++++.. ..++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5788998887411 0135699999999999999999999999999999999998763 4899999998765
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. ..++.+||++|++.+++.+||+||+.+....+ ..+.++.+++++++++.+||.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 31 13567999999999999999999999875443 1233444567899999999998877764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|++ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 7999
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=340.18 Aligned_cols=215 Identities=27% Similarity=0.350 Sum_probs=179.8
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (236)
T cd03219 2 EVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITG 66 (236)
T ss_pred eeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCC
Confidence 4677777663 2469999999999999999999999999999999999865 347999999987653
Q ss_pred cc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 910 ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE-------VDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 910 ~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
.. .++.++|++|++.+++.+||+|++.+....+.... .......+.++++++.+++.+..++.+
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (236)
T cd03219 67 LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA----- 141 (236)
T ss_pred CCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----
Confidence 21 23458999999999999999999988654321110 112334556889999999988777663
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |
T Consensus 142 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G 219 (236)
T cd03219 142 GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-G 219 (236)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-C
Confidence 579999999999999999999999999999999999999999999999878999999999987 57788999999986 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++..|+.
T Consensus 220 ~i~~~~~~ 227 (236)
T cd03219 220 RVIAEGTP 227 (236)
T ss_pred EEEeecCH
Confidence 88888874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=308.72 Aligned_cols=210 Identities=26% Similarity=0.351 Sum_probs=180.0
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
..++|.|+|.. .=-..+..|.+||++||+||||||||||||+|+|...+ .+|+|+|||.+...
T Consensus 3 ~L~~V~~~y~~---------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~ 65 (231)
T COG3840 3 ALDDVRFSYGH---------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTA 65 (231)
T ss_pred cccceEEeeCc---------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCc
Confidence 45677777743 12367789999999999999999999999999998774 48999999998654
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
. ...|-++.++|+..+|..+||.+|+.++..--+ .. ..+.++.++.++..+||..+.+.+. ..||||||||
T Consensus 66 ~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQR 137 (231)
T COG3840 66 SPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQR 137 (231)
T ss_pred CCcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHH
Confidence 3 345678899999999999999999987642111 12 2344567999999999999999985 4799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|++||+|+++-+||+||||.|.||+.-+.++..++.+++++ +.|++++||+|+ |.....|+++++++ |++.+.|+.
T Consensus 138 vALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 138 VALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999999999999999999999999999999999865 999999999997 79999999999986 799999986
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=336.55 Aligned_cols=215 Identities=27% Similarity=0.425 Sum_probs=180.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++... ....+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~~---------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 70 (218)
T cd03266 2 ITADALTKRFRDVK---------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVV 70 (218)
T ss_pred eEEEEEEEecCCCC---------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcc
Confidence 56788887764210 112699999999999999999999999999999999998653 4899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
. ..+++.++|++|++.+++.+||+||+.+....+ .....+..+.++++++.+++.+..++.+ ..||||||
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (218)
T cd03266 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMR 142 (218)
T ss_pred cCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHH
Confidence 3 234567999999998889899999998765433 1233445567899999999988777764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 143 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 143 QKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 9999999999999999999999999999999999999999777999999999986 57788999999986 6776643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=338.95 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=181.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ .+.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 67888888773 2469999999999999999999999999999999999865 35899999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ..++.++|++|++.+++.+||.||+.+....+.. .........+.++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 32 2245689999999888889999999886543211 00122334456889999999988777664 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999875 899999999986 57788999999985 78888887
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=338.92 Aligned_cols=212 Identities=26% Similarity=0.348 Sum_probs=179.8
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ .+.+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 66 (232)
T cd03218 2 RAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITK 66 (232)
T ss_pred eEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 5677777663 24699999999999999999999999999999999998653 47999999987543
Q ss_pred c---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 910 E---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 910 ~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
. . .++.++|++|++.+++.+||+|++.+....+. .......+.++++++.+++.+..++.+ ..|||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 138 (232)
T cd03218 67 LPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGE 138 (232)
T ss_pred CCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHH
Confidence 1 1 23468999999999999999999987643321 223344556889999999988777663 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|+
T Consensus 139 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 216 (232)
T cd03218 139 RRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGT 216 (232)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeC
Confidence 99999999999999999999999999999999999999999877999999999986 68899999999985 78888887
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 217 ~ 217 (232)
T cd03218 217 P 217 (232)
T ss_pred H
Confidence 5
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=356.59 Aligned_cols=214 Identities=23% Similarity=0.355 Sum_probs=187.4
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|++..+. +..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999987763 24699999999999999999999999999999999998763 489999999876
Q ss_pred Cc-ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~-~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ...++.+|||+|++.++|.+||.||+.|....+ ..+..+.+++++++++.++|.+..++.+ .+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHH
Confidence 43 234678999999999999999999999976543 2344556677999999999998888764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+|||||+|||..++..+.+.|+++.++ |.|+|++||++. ++..++|++++|++ |+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcC
Confidence 9999999999999999999999999999999999999988654 999999999986 68899999999985 79999998
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 234 ~ 234 (377)
T PRK11607 234 P 234 (377)
T ss_pred H
Confidence 5
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=358.57 Aligned_cols=214 Identities=25% Similarity=0.369 Sum_probs=185.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.+. ++.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i 67 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRM 67 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 377889887763 24699999999999999999999999999999999998763 489999999876
Q ss_pred Ccc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
... ..++.+||++|+..+++.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 68 ~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~ 139 (369)
T PRK11000 68 NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQR 139 (369)
T ss_pred CCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 432 23467999999999999999999999876543 1234445567899999999998887764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||++||++. ++...+|++++|++ |+++..|+
T Consensus 140 QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~ 217 (369)
T PRK11000 140 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGK 217 (369)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 68889999999985 79999987
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 218 ~ 218 (369)
T PRK11000 218 P 218 (369)
T ss_pred H
Confidence 5
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=352.17 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=177.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.|.++..+... .+...+++.+++.+||.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999998655433110 0112245678999999988887765
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
+|||||||||+||+||+++|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999854 3 4556667888899999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=355.64 Aligned_cols=203 Identities=25% Similarity=0.293 Sum_probs=178.8
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc---cc----cceEEEeccCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TF----ARISGYCEQNDI 924 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~q~~~ 924 (1426)
+.+.+|+|+||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .. ++.+|||+|+..
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34569999999999999999999999999999999999876 3589999999886542 22 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000556 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1426)
Q Consensus 925 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlL 1004 (1426)
++|.+||+||+.|..... ..+.+++.+++.++++.+||.+..++.+ ..|||||||||+|||||+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2345566778999999999998888774 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1005 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||||++||+.++..+++.++++.++ |+|||++||++. ++.+.+|++++|++ |+++..|+.
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~ 214 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTP 214 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCH
Confidence 9999999999999999999999754 899999999986 57899999999985 799999975
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=324.25 Aligned_cols=217 Identities=26% Similarity=0.335 Sum_probs=179.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++.+|++..+.... ....+|+|||+++.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+.
T Consensus 3 ~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~ 71 (252)
T COG1124 3 LLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPL 71 (252)
T ss_pred eEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCccc
Confidence 367888887775321 112599999999999999999999999999999999998764 589999999875
Q ss_pred Ccc----cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000556 908 KQE----TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSG 980 (1426)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~ 980 (1426)
... .+.+.+-+|+|++. +.|..||++.|.-.... ...++.+ +++.++++.+||.+. .+.. +..
T Consensus 72 ~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~e 141 (252)
T COG1124 72 APKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHE 141 (252)
T ss_pred CccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chh
Confidence 543 36778999999985 56889999988644322 2233333 338999999999864 3333 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
||||||||++|||||+.+|++|+||||||+||+..++.|+++|.++.++ |.|.|+++||.+ -+..+|||+++|++ |+
T Consensus 142 LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~-G~ 219 (252)
T COG1124 142 LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDN-GQ 219 (252)
T ss_pred cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeC-Ce
Confidence 9999999999999999999999999999999999999999999999865 889999999987 47899999999986 79
Q ss_pred EEEEcCCC
Q 000556 1060 EIYVGPLG 1067 (1426)
Q Consensus 1060 ~v~~G~~~ 1067 (1426)
++..+|.+
T Consensus 220 ivE~~~~~ 227 (252)
T COG1124 220 IVEIGPTE 227 (252)
T ss_pred EEEeechh
Confidence 99999863
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-36 Score=335.94 Aligned_cols=221 Identities=37% Similarity=0.610 Sum_probs=181.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPK 907 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 907 (1426)
+.|+|+++.++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 56888888774210 135799999999999999999999999999999999997641 23589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE-VMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.....++.++|++|++..++.+||+||+.|......+...........+++ .++.+++.+..++. ++.||+|||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 544456779999999999999999999998765433222222223334555 89999998777665 457999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998877999999999985468899999999986 7887765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=309.25 Aligned_cols=200 Identities=27% Similarity=0.395 Sum_probs=175.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1426)
..+|+|||+.|++||++.|+||||||||||||+|.+...|+ +|+|.+||+++..... +|.+|.|+|+..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 56999999999999999999999999999999999999998 9999999999875432 57899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+..||.||++|+.+..|... .+.+.++.++|+..||.+.++.
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~---- 133 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARA---- 133 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhc----
Confidence 99999999999988765322 1245567889999999998874
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
.+..|||||+|||+||||++.+|++|+-||||.+||+.++.+|++.+.++.+ .+|+|+..+|+..-+-.+--+++.|
T Consensus 134 -lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr--~GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 134 -LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR--LGTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred -CccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh--cCcEEEEEeccHHHHHhccCcEEEE
Confidence 4558999999999999999999999999999999999999999999999864 3666666788887777777899999
Q ss_pred cCCeEEEecC
Q 000556 399 SDGQIVYQGP 408 (1426)
Q Consensus 399 ~~G~iv~~G~ 408 (1426)
++|+++....
T Consensus 211 ~~Grl~~d~~ 220 (223)
T COG2884 211 EDGRLVRDES 220 (223)
T ss_pred eCCEEEeccc
Confidence 9999987643
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=353.89 Aligned_cols=210 Identities=27% Similarity=0.401 Sum_probs=177.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 45999999999999999999999999999999999999988 9999999998865443 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.|+.+....... + ...+....++.+++.+||++..|..+ ..
T Consensus 92 ~eni~~~~~~~~~~~~-----------------~-------------~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER-----------------P-------------NAAAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccC-----------------C-------------CHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 9999997643210000 0 00112235678899999987776554 57
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~-~g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEE-LKFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998753 345566688999999999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=349.79 Aligned_cols=212 Identities=23% Similarity=0.357 Sum_probs=184.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|++.++. ++.+|+|+||++++||++||+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 67888887763 3469999999999999999999999999999999999866 35899999998764
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ..++.+||++|++.+++.+||.|++.+.+.++. .+.++..++++++++.+||.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 32 245679999999999999999999998776542 233444556899999999999888774 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||++||+||+++|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999865 799999999986 68899999999985 799999885
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=335.40 Aligned_cols=208 Identities=28% Similarity=0.398 Sum_probs=173.0
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++... ..+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 69 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDIS 69 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehh
Confidence 35778887763100 01469999999999999999999999999999999999865 34899999998764
Q ss_pred ccc-------ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000556 909 QET-------FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1426)
Q Consensus 909 ~~~-------~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 981 (1426)
... .++.++|++|++.+++.+||+|++.+....+. ......++.++++++.+||.+..++.+ ..|
T Consensus 70 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 141 (218)
T cd03255 70 KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SEL 141 (218)
T ss_pred hcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhc
Confidence 311 24578999999999999999999998755431 223334556889999999988777664 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 982 SgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|+++ ++ +.+|++++|++|
T Consensus 142 S~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~G 216 (218)
T cd03255 142 SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRDG 216 (218)
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeCC
Confidence 99999999999999999999999999999999999999999999987 5899999999986 35 489999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=358.58 Aligned_cols=218 Identities=26% Similarity=0.352 Sum_probs=185.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.+. ++.+|+|+||.+++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEc
Confidence 377889888763 3579999999999999999999999999999999999876 3589999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ...++.+|||+|++.+++.+||+|++.+....+.. ........++.++++++.+++.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSg 142 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSG 142 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCH
Confidence 53 23467799999999988899999999875422110 01012334467899999999998888764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||+.|||+|+++|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 143 GerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~ 220 (402)
T PRK09536 143 GERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAA 220 (402)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999987 57899999999985 789999
Q ss_pred cCCC
Q 000556 1064 GPLG 1067 (1426)
Q Consensus 1064 G~~~ 1067 (1426)
|+..
T Consensus 221 G~~~ 224 (402)
T PRK09536 221 GPPA 224 (402)
T ss_pred cCHH
Confidence 9863
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=332.39 Aligned_cols=206 Identities=29% Similarity=0.390 Sum_probs=175.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~ 66 (208)
T cd03268 2 KTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQK 66 (208)
T ss_pred EEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccc
Confidence 5677777663 2469999999999999999999999999999999999865 358999999987643
Q ss_pred -ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 910 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 910 -~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
...++.++|++|++.+++.+||+||+.+....+. . .++.++++++.+++.+..++.+ ..||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 134 (208)
T cd03268 67 NIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQR 134 (208)
T ss_pred hHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHH
Confidence 2235578999999988889999999987654321 1 1345788999999988877764 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 135 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999999999999999998877999999999986 57788999999985 6887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-36 Score=319.48 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=175.3
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHI 238 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 238 (1426)
...++|++||+.+++||+++|+||||+|||||||+|+|..++. +|+|.++|++++...++ +-++||||....|
T Consensus 14 G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF 90 (237)
T COG0410 14 GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIF 90 (237)
T ss_pred cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccch
Confidence 3467999999999999999999999999999999999999987 99999999999887764 4689999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-Cccccccccc
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVG 317 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vG 317 (1426)
+.|||+|||..++..+.. .. . .....|.+.+.|= |.+..+..-|
T Consensus 91 ~~LTVeENL~~g~~~~~~-~~----------~------------------------~~~~~e~v~~lFP~Lker~~~~aG 135 (237)
T COG0410 91 PRLTVEENLLLGAYARRD-KE----------A------------------------QERDLEEVYELFPRLKERRNQRAG 135 (237)
T ss_pred hhCcHHHHHhhhhhcccc-cc----------c------------------------ccccHHHHHHHChhHHHHhcCccc
Confidence 999999999987643211 00 0 0001233444442 4445555555
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
.|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.|+++.+. ++.+|+.+.|....+.+++|+.++
T Consensus 136 -----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yv 209 (237)
T COG0410 136 -----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYV 209 (237)
T ss_pred -----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEE
Confidence 59999999999999999999999999999999999999999999998754 456777799999999999999999
Q ss_pred ecCCeEEEecChhhHHH
Q 000556 398 LSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1426)
|.+|+|++.|+.+++.+
T Consensus 210 le~Griv~~G~~~eL~~ 226 (237)
T COG0410 210 LENGRIVLSGTAAELLA 226 (237)
T ss_pred EeCCEEEEecCHHHHhc
Confidence 99999999999998763
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=336.44 Aligned_cols=213 Identities=23% Similarity=0.291 Sum_probs=177.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCC-----CCceEEEEEEEcC
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK-----TGGYITGNITISG 904 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~-----~~~~~~G~i~i~g 904 (1426)
+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|.. . +.+|+|.++|
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g 66 (227)
T cd03260 2 ELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDG 66 (227)
T ss_pred EEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECC
Confidence 5677777653 236999999999999999999999999999999999986 4 4589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.+... ..+++.++|++|++.++ .+||+||+.+....+. .......+++++++++.+++.+..+..+. +.
T Consensus 67 ~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~ 140 (227)
T cd03260 67 KDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---AL 140 (227)
T ss_pred EEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---cc
Confidence 87542 22456789999998887 7999999988654331 11222234568899999999877666531 25
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. ++.+.+|++++|++ |+
T Consensus 141 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~ 217 (227)
T cd03260 141 GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GR 217 (227)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CE
Confidence 79999999999999999999999999999999999999999999999877 99999999986 57788999999985 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 218 i~~~g~~ 224 (227)
T cd03260 218 LVEFGPT 224 (227)
T ss_pred EEEecCc
Confidence 9888875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=337.20 Aligned_cols=207 Identities=29% Similarity=0.374 Sum_probs=172.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999987 9999999988765322 35699999999899
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.++......... .+....++.+++.+||.+..++.+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSE---------------------------------EEIREIVLEKLEAVGLRGAEDLYP-- 134 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCH---------------------------------HHHHHHHHHHHHHcCCchhhcCCh--
Confidence 999999999886432100000 011224567889999987666555
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|
T Consensus 135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 445555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999987653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=336.93 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=181.5
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 70 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLT 70 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcc
Confidence 5678888776310 0012699999999999999999999999999999999998763 4799999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. ..++.++|++|++.+++.+|++||+.+....+. .......+.++++++.++|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 142 (233)
T cd03258 71 LLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLS 142 (233)
T ss_pred cCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCC
Confidence 31 124678999999999999999999988654331 233344556889999999988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 143 ~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~ 220 (233)
T cd03258 143 GGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVV 220 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 57788999999985 7899
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
..|+.
T Consensus 221 ~~~~~ 225 (233)
T cd03258 221 EEGTV 225 (233)
T ss_pred EecCH
Confidence 88864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-36 Score=332.61 Aligned_cols=206 Identities=25% Similarity=0.331 Sum_probs=174.5
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887762 12369999999999999999999999999999999999865 34899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. .+++.++|++|++.+++.+|+.|++.+....+. ......++.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLS 139 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 31 235678999999988889999999988654321 223334567889999999987776663 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++|
T Consensus 140 ~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 140 GGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 99999999999999999999999999999999999999999998777999999999986 577889999999864
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=333.32 Aligned_cols=207 Identities=28% Similarity=0.402 Sum_probs=180.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCC----CCCccceEEEecCCC-CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG----EFVPERTAAYISQHD-NHIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 239 (1426)
..+|+|+|+.|++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999998 899999998865 223367899999996 4567
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.-||.|.++|+.+..+... .+.+.+++.+++.+||.+.++.
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r----- 134 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDR----- 134 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccC-----
Confidence 7899999999988766421 1234568889999999988774
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.+..|||||||||+||.+|+.+|++++|||||+|||+..+.++++.++++... ++.++|.++|+.+.+.+++|++++|+
T Consensus 135 ~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 135 PPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred CccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 45579999999999999999999999999999999999999999999998764 44556668999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 000556 400 DGQIVYQGPRELVLE 414 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~~ 414 (1426)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877654
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=368.41 Aligned_cols=217 Identities=28% Similarity=0.427 Sum_probs=182.3
Q ss_pred ccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEE
Q 000556 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901 (1426)
Q Consensus 822 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 901 (1426)
.|.....++|+||+|.|+. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|... +.+|+|+
T Consensus 465 ~~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~ 531 (709)
T COG2274 465 LPKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRIL 531 (709)
T ss_pred ccccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEE
Confidence 3445568999999999963 22369999999999999999999999999999999999877 4589999
Q ss_pred EcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-------cccc
Q 000556 902 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-------LIQS 971 (1426)
Q Consensus 902 i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~ 971 (1426)
+||+++.+ ..+|+.+|||+|++.++. -|++||+.++. | +.+. +.+.++++..|..+ -.++
T Consensus 532 ~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~~----e~i~~A~~~ag~~~fI~~lP~gy~t 601 (709)
T COG2274 532 LDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EATD----EEIIEAAQLAGAHEFIENLPMGYDT 601 (709)
T ss_pred ECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhccccccc
Confidence 99998654 467899999999998875 69999997642 2 2222 23555665555544 4466
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceE
Q 000556 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 972 ~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v 1051 (1426)
.+|.. ..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. .|+|+|+++|+++ ..+.+|+|
T Consensus 602 ~v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrI 677 (709)
T COG2274 602 PVGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRI 677 (709)
T ss_pred ccccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEE
Confidence 67754 46899999999999999999999999999999999999999999999985 4799999999986 68999999
Q ss_pred EEEecCcEEEEEcCC
Q 000556 1052 FLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1052 ~ll~~gg~~v~~G~~ 1066 (1426)
++|++ |+++..|+.
T Consensus 678 iVl~~-Gkiv~~gs~ 691 (709)
T COG2274 678 IVLDQ-GKIVEQGSH 691 (709)
T ss_pred EEccC-CceeccCCH
Confidence 99985 899999986
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=305.23 Aligned_cols=201 Identities=25% Similarity=0.395 Sum_probs=173.2
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1426)
..+..|++||++||+|||||||||||++|+|...|. +|+|.+||.+.....| +|-++.++|+..+|..+||++|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 467889999999999999999999999999999998 9999999999876665 578999999999999999999999
Q ss_pred HhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhH
Q 000556 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1426)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1426)
++.. ++-+ + ..+....++.++..+||..+.+...+ +|||||
T Consensus 94 LGl~---P~Lk------L-------------------------~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------L-------------------------NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccc------c-------------------------CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8753 1111 0 01123456788999999998886554 699999
Q ss_pred hhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecC
Q 000556 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1426)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1426)
||||++||+|+++.+|++||||+|+||+.-+.+....+.+++...+.|+++ ++|..+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~Tllm-VTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLM-VTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEE-EeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999998766666665 5666688999999999999999999999
Q ss_pred hhhHH
Q 000556 409 RELVL 413 (1426)
Q Consensus 409 ~~~~~ 413 (1426)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 88764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.43 Aligned_cols=214 Identities=22% Similarity=0.343 Sum_probs=181.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56788887763 2469999999999999999999999999999999999865 35899999998764
Q ss_pred c-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 909 Q-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
. ...++.++|++|++..++.+||+|++.+...... .......++.+.++++.+||.+..+..+ ..||+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSG 139 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCH
Confidence 3 1235678999999988889999999987542111 1233444567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 140 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (240)
T PRK09493 140 GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAED 217 (240)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 789998
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 218 g~~ 220 (240)
T PRK09493 218 GDP 220 (240)
T ss_pred CCH
Confidence 875
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=339.08 Aligned_cols=216 Identities=26% Similarity=0.308 Sum_probs=177.6
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 67 (241)
T cd03256 2 EVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP--TSGSVLIDGTDINK 67 (241)
T ss_pred EEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEeccc
Confidence 56777766531 14699999999999999999999999999999999998653 47999999987643
Q ss_pred c------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 910 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 910 ~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
. ..++.++|++|++.+++.+||+||+.+...... ..........+.++++++.++|.+..++. +
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 142 (241)
T cd03256 68 LKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----A 142 (241)
T ss_pred cCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----c
Confidence 1 235678999999998899999999987532110 00111123345688899999998777665 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 143 ~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~- 220 (241)
T cd03256 143 DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD- 220 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999764 899999999987 57779999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 221 G~i~~~~~~ 229 (241)
T cd03256 221 GRIVFDGPP 229 (241)
T ss_pred CEEEeecCH
Confidence 789988875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=349.23 Aligned_cols=206 Identities=27% Similarity=0.374 Sum_probs=176.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 56999999999999999999999999999999999999998 999999998875421 1356999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.++..+... .+....++.+++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998765433110 0112245778999999988876654
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||+||+++|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|...++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-E-GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4555667888899999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-36 Score=342.69 Aligned_cols=203 Identities=25% Similarity=0.305 Sum_probs=173.9
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeccCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDI 924 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~ 924 (1426)
+.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... . .++.++|++|++.
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~ 112 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA 112 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc
Confidence 456799999999999999999999999999999999998763 479999999875431 1 1356899999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000556 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1426)
Q Consensus 925 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlL 1004 (1426)
+++.+||+||+.+..... ........+.++++++.++|.+..++.+ ..||||||||++||++|+.+|+||+|
T Consensus 113 ~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~illL 184 (269)
T cd03294 113 LLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDILLM 184 (269)
T ss_pred cCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 888999999998865432 1223344566889999999998887774 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1005 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 185 DEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 185 DEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998754 899999999986 57789999999985 788888874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=331.61 Aligned_cols=191 Identities=29% Similarity=0.378 Sum_probs=163.1
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCC-CCCCCCHH
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI-HSPFVTVY 932 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~-~~~~lTv~ 932 (1426)
+.+|+|+||++++||+++|+|||||||||||++|+|... +.+|+|.++|.+......++.++|++|++. .+...|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 459999999999999999999999999999999999866 358999999987644344567999999974 33467999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q 000556 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012 (1426)
Q Consensus 933 e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD 1012 (1426)
||+.+..... . . ..+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 1 1245789999999998877764 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 1013 ARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 1013 ~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i 204 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAI 204 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999777999999999986 57778999999986 565
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=332.97 Aligned_cols=214 Identities=26% Similarity=0.393 Sum_probs=179.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++. +++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 356777776631 11469999999999999999999999999999999999865 35899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
. ..+++.++|++|++.+++..|++||+.+....+. .+.....+.++++++.++|.+..++.+ ..||+|||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 139 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMK 139 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHH
Confidence 3 2345669999999988889999999988654432 223334456889999999988777764 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 140 qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 140 RKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999999999999999999999876 699999999986 57788999999985 788888864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=342.46 Aligned_cols=206 Identities=20% Similarity=0.246 Sum_probs=154.1
Q ss_pred CCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcC
Q 000556 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 904 (1426)
.|..+.+.+|.+.++. +..+++.+++..++.-...+++|+||+||||+++++.|..+ +..|-+-+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc
Confidence 3456888888877642 11268899999999999999999999999999999998655 3456665543
Q ss_pred ccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 905 YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 905 ~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
+..++|-.|..+-+-.+.|.+ +.+-..++ |..+ ++.+++-+..+||..-.-. ..+.+||||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~-vd~~~~~~-pG~~-----~ee~r~hl~~~Gl~g~la~----~si~~LSGG 486 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNA-VDFMEKSF-PGKT-----EEEIRRHLGSFGLSGELAL----QSIASLSGG 486 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHH-HHHHHHhC-CCCC-----HHHHHHHHHhcCCCchhhh----ccccccCCc
Confidence 456788888755443444433 23333333 2222 2236677889999753221 125689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||-||.+|.....+|.+|+|||||+.||..+-..+-++|++. +..||+++|+.+. +-..|+++++.++|.-.-+.|
T Consensus 487 QKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~f-i~~~c~E~Wvve~g~vt~ieg 562 (582)
T KOG0062|consen 487 QKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEEF-ISSLCKELWVVEDGKVTPIEG 562 (582)
T ss_pred chhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHHH-HhhcCceeEEEcCCcEEeeec
Confidence 999999999999999999999999999999999999999876 5689999999764 778999999999754444445
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
..
T Consensus 563 ~~ 564 (582)
T KOG0062|consen 563 GI 564 (582)
T ss_pred cH
Confidence 43
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=350.54 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=175.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1426)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999988 9999999998765432 35799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 138 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------------------------------AEIKARVTELLELVGLSDKADRYP-- 138 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998754332110 011224567899999988777554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++.++||+|++|
T Consensus 139 ---~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 139 ---AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 445555788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998774
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=323.73 Aligned_cols=224 Identities=27% Similarity=0.385 Sum_probs=189.7
Q ss_pred CCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCC
Q 000556 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHD 235 (1426)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d 235 (1426)
++-....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++--+|..
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~ 88 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQIT 88 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccc
Confidence 3445678999999999999999999999999999999999999998 99999999999888775 3467889999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1426)
.+|++|||.||+..++..+.. +..... .|.. ..+..+...++..+|+.+||.+.+|+.
T Consensus 89 rlF~~lTVlENv~va~~~~~~---~~~~l~----------~~~~---------~~~e~~~~e~A~~~Le~vgL~~~a~~~ 146 (250)
T COG0411 89 RLFPGLTVLENVAVGAHARLG---LSGLLG----------RPRA---------RKEEREARERARELLEFVGLGELADRP 146 (250)
T ss_pred cccCCCcHHHHHHHHhhhhhh---hhhhhc----------cccc---------hhhHHHHHHHHHHHHHHcCCchhhcch
Confidence 999999999999998764421 000000 0000 001122345678899999999999988
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
.|+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.|+++.+ .++++|+.+-|+..-++.+||+|
T Consensus 147 A~~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~-~~g~tillIEHdM~~Vm~l~dri 220 (250)
T COG0411 147 AGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRD-RGGVTILLIEHDMKLVMGLADRI 220 (250)
T ss_pred hhc-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHh-cCCcEEEEEEeccHHHhhhccEE
Confidence 874 999999999999999999999999999999999999999999999875 35577777999999999999999
Q ss_pred EEecCCeEEEecChhhHHH
Q 000556 396 ILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1426)
+||+.|+++.+|+++++.+
T Consensus 221 ~Vl~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 221 VVLNYGEVIAEGTPEEVRN 239 (250)
T ss_pred EeccCCcCcccCCHHHHhc
Confidence 9999999999999999864
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=355.85 Aligned_cols=206 Identities=23% Similarity=0.315 Sum_probs=178.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
..+|+|+|+.+++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|++.+|+.+||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 45899999999999999999999999999999999999998 9999999998865544 4689999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
.||+.|+.+.++... .+...+++++++.+||.+..+.. +++
T Consensus 109 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~-----~~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRK-----PHQ 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCC-----hhh
Confidence 999999865432110 01223567889999998776654 457
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++|+||||+++||..++..+.+.|+++.+..+ .+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVG-VTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999988866444 5556688999999999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=331.11 Aligned_cols=205 Identities=25% Similarity=0.354 Sum_probs=173.4
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~------------~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~ 67 (214)
T cd03292 2 EFINVTKTYP------------NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSD 67 (214)
T ss_pred EEEEEEEEeC------------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEccc
Confidence 4677777663 12469999999999999999999999999999999999865 348999999987643
Q ss_pred c------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 910 E------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 910 ~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
. ..++.++|++|++.+++.+|++||+.+....+. ...+..++.++++++.+++.+..++.+ ..|||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 139 (214)
T cd03292 68 LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSG 139 (214)
T ss_pred CCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCH
Confidence 1 245679999999999999999999988654331 233344567889999999988777663 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G 212 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERG 212 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999777999999999986 567789999999863
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=344.40 Aligned_cols=218 Identities=20% Similarity=0.294 Sum_probs=180.8
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++... ...+.+|+||||+|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 67889988874210 0113699999999999999999999999999999999998763 4899999998865
Q ss_pred cc-----cccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000556 909 QE-----TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK--PLIQSLVGLPGVSG 980 (1426)
Q Consensus 909 ~~-----~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~vg~~~~~~ 980 (1426)
.. ..++.+|||+|++. .+...||+|++.|..... ..+.++..+.++++++.+||. +..++. ++.
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 31 34567999999863 233579999998865432 234555566789999999997 556655 468
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 999999999986 57788999999986 79
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9998875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.80 Aligned_cols=217 Identities=24% Similarity=0.312 Sum_probs=179.9
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++... ..+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEGS---------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCCC---------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 378899998874210 11469999999999999999999999999999999999865 3589999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000556 908 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1426)
Q Consensus 908 ~~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 980 (1426)
.... . ++.++|++|++.+++.+|++||+.+....+ ....+..+++++++++.+||.+..++.+ ..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 4321 1 256899999998889999999998865432 1223344567899999999988777653 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ +|+|||+++|+++ ++ +.+|++++|++ |+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~-~~~~~~~~l~~-G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LA-KRMSRQLEMRD-GR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhhCEEEEEEC-CE
Confidence 999999999999999999999999999999999999999999999875 5899999999986 34 45689999985 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9888875
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=318.63 Aligned_cols=202 Identities=24% Similarity=0.388 Sum_probs=186.3
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCH
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTV 931 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv 931 (1426)
+++.+++|+||.++||++.|++|+|||||||++++|.|... +.+|.|.++|.+.++.. +.++||.|.+.-++|.+||
T Consensus 13 g~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~k~tv 89 (300)
T COG4152 13 GDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQEI-KNRIGYLPEERGLYPKMTV 89 (300)
T ss_pred CceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhhh-hhhcccChhhhccCccCcH
Confidence 56789999999999999999999999999999999999887 45899999999987643 4568999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000556 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgL 1011 (1426)
.|.|.|-|.++ .++.++..+.++.+|+.+++......+ ++.||.|++|++.+-.+++++|++++||||.|||
T Consensus 90 ~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 90 EDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred HHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99999999987 466777788899999999999988777 4689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1012 DARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||.+.+.+.+.+.++++.|.|||+++|++. .+-++||++++|++ |+.|..|+.
T Consensus 162 DPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v 214 (300)
T COG4152 162 DPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTV 214 (300)
T ss_pred ChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccH
Confidence 999999999999999999999999999997 68999999999986 788888986
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=337.75 Aligned_cols=214 Identities=27% Similarity=0.362 Sum_probs=180.8
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. ++.+|+||||++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 67888887763 23699999999999999999999999999999999998653 4799999998754
Q ss_pred c-----------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000556 909 Q-----------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1426)
Q Consensus 909 ~-----------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 977 (1426)
. ...++.++|++|++.+++..|+.||+.+...... ....+...+.++++++.+||.+..++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 2 1234578999999988888999999987543211 123344456688999999998777665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 978 ~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 3579999999999999999999999999999999999999999999999877999999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 788888874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=336.42 Aligned_cols=213 Identities=27% Similarity=0.377 Sum_probs=179.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++. .+.+|+|+|++|++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 67 (242)
T cd03295 2 EFENVTKRYGG------------GKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIRE 67 (242)
T ss_pred EEEEEEEEeCC------------cceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCc
Confidence 56777776631 14599999999999999999999999999999999998653 47999999987543
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHH
Q 000556 910 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP--LIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 910 ---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~vg~~~~~~LSgG 984 (1426)
...++.++|++|++.+++.+||+||+.+....+ ..+.+...+.+.++++.+++.+ ..++. +..||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRY-----PHELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHH
Confidence 233557899999999999999999998865433 1233444566889999999985 55555 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 217 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQV 217 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 999999999999999999999999999999999999999999765 899999999986 57789999999985 788888
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 218 ~~~ 220 (242)
T cd03295 218 GTP 220 (242)
T ss_pred cCH
Confidence 874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=336.08 Aligned_cols=212 Identities=26% Similarity=0.362 Sum_probs=179.0
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 66 (255)
T PRK11248 2 LQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVE 66 (255)
T ss_pred EEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 56788887663 2469999999999999999999999999999999999865 34799999998764
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
. ..+.+||++|++.+++.+||.||+.+....+ ........+.++++++.++|.+..++.+ ..||||||||
T Consensus 67 ~--~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 136 (255)
T PRK11248 67 G--PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQR 136 (255)
T ss_pred C--CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 3 2345799999998888899999998764432 1233344567899999999988777653 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEec-CcEEEEEcCC
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKR-GGQEIYVGPL 1066 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~-gg~~v~~G~~ 1066 (1426)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++ +|+++..++.
T Consensus 137 l~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 137 VGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999999854 5899999999986 57889999999985 5888887654
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=354.05 Aligned_cols=206 Identities=26% Similarity=0.390 Sum_probs=176.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999988 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.|+.+..+... .+....++++++.+||++..+..+ ..
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~lgL~~~~~~~~-----~~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------------------------------EEINQRVNQVAEVLQLAHLLDRKP-----KA 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCCh-----hh
Confidence 999999765332110 011234677899999988777555 47
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++.+++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533 44555678888999999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=332.65 Aligned_cols=210 Identities=28% Similarity=0.405 Sum_probs=175.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++ .+.+|+|+||++++||++||+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~ 66 (222)
T cd03224 2 EVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP--RSGSIRFDGRDITG 66 (222)
T ss_pred EEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcCC
Confidence 5677776652 24699999999999999999999999999999999998763 47999999987643
Q ss_pred cc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHH
Q 000556 910 ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 910 ~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSgG 984 (1426)
.. .++.++|++|++.+++.+|++||+.+....+. ....++.+.++++.+ ++.+..++. +..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G 136 (222)
T cd03224 67 LPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGG 136 (222)
T ss_pred CCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHH
Confidence 21 24568999999999999999999988654321 122334567788887 576666665 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 214 (222)
T cd03224 137 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEG 214 (222)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeC
Confidence 999999999999999999999999999999999999999999877899999999986 57788999999985 7888888
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 215 ~~ 216 (222)
T cd03224 215 TA 216 (222)
T ss_pred CH
Confidence 64
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=340.55 Aligned_cols=215 Identities=25% Similarity=0.326 Sum_probs=181.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-++++|+++.++. ...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEEC
Confidence 3788999887731 23599999999999999999999999999999999998653 489999999876
Q ss_pred Ccc---cccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQE---TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~~---~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
... ..++.+||++|++. .++..||.||+.|..... ..+....++.++++++.++|.+..++.+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSg 141 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSY 141 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCH
Confidence 432 23457999999863 345689999998764322 2334444566899999999988877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 G~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~ 219 (274)
T PRK13647 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAE 219 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 46788999999985 789998
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 220 g~~ 222 (274)
T PRK13647 220 GDK 222 (274)
T ss_pred CCH
Confidence 875
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=376.05 Aligned_cols=207 Identities=29% Similarity=0.428 Sum_probs=173.5
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1426)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|+++|. +|+|.+||.++++..+ ++.++||+|++.+| +.|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf-~gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLF-SGS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhh-cCc
Confidence 5899999999999999999999999999999999999998 9999999999987765 58899999988665 469
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
++||+.++.. +.+.++.++|+...+. .+ .+..++..+||.||+.+.
T Consensus 563 I~eNi~l~~p-------------------------~~~~e~i~~A~~~ag~-----~~---fI~~lP~gy~t~v~E~G~- 608 (709)
T COG2274 563 IRENIALGNP-------------------------EATDEEIIEAAQLAGA-----HE---FIENLPMGYDTPVGEGGA- 608 (709)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhCc-----HH---HHHhcccccccccccCCC-
Confidence 9999998642 2222233333322221 11 244688999999997655
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++. .++|+|+..|+ ..+.+.+|+|++|++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~--~~~T~I~IaHR--l~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL--QGRTVIIIAHR--LSTIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh--cCCeEEEEEcc--chHhhhccEEEEccCCc
Confidence 899999999999999999999999999999999999999999999875 35666664443 46889999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
|+.+|+++++++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999876
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=338.42 Aligned_cols=215 Identities=20% Similarity=0.298 Sum_probs=181.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+||||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP--DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEc
Confidence 478999988763 24699999999999999999999999999999999998653 489999999876
Q ss_pred Ccc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000556 908 KQE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1426)
Q Consensus 908 ~~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 981 (1426)
... ..++.++|++|+..+++.+||.||+.+...... ..+....++.+.++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 421 134568999999988899999999987543221 1223334456788999999988777764 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 982 SgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999998765 899999999986 57788999999985 799
Q ss_pred EEEcCC
Q 000556 1061 IYVGPL 1066 (1426)
Q Consensus 1061 v~~G~~ 1066 (1426)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 998875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=338.04 Aligned_cols=217 Identities=25% Similarity=0.274 Sum_probs=177.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (243)
T TIGR02315 2 LEVENLSKVYP------------NGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDIT 67 (243)
T ss_pred eEEEeeeeecC------------CCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhh
Confidence 46778877653 02459999999999999999999999999999999999865 34899999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-----PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~-----~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 977 (1426)
.. .+++.++|++|++.+++.+||+||+.+...... .........+++++++++.++|.+..+..
T Consensus 68 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 142 (243)
T TIGR02315 68 KLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR----- 142 (243)
T ss_pred hCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----
Confidence 21 235679999999988899999999976421100 00011223345688999999998777765
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 978 ~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++
T Consensus 143 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~ 221 (243)
T TIGR02315 143 ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA 221 (243)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 47788999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 222 -G~i~~~~~~ 230 (243)
T TIGR02315 222 -GEIVFDGAP 230 (243)
T ss_pred -CEEEecCCH
Confidence 788888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=308.64 Aligned_cols=207 Identities=30% Similarity=0.428 Sum_probs=175.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 241 (1426)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|+|.+||++++++.+. +.-+..+|+..+-+..
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999998 99999999999888764 4568999998887778
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+|-+.++..-.+.+.. ..+..++++..|...++.+.+.. ..
T Consensus 91 tv~eVV~mGr~p~~~g~~--------------------------------~~e~~~i~~~ala~~d~~~la~R-----~y 133 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE--------------------------------PEEDERIAAQALAATDLSGLAGR-----DY 133 (259)
T ss_pred EHHHHHHhcccccccCCC--------------------------------chhhHHHHHHHHHHcChhhhhcc-----ch
Confidence 999999998653321110 01233456778888888877753 34
Q ss_pred ccCChhHhhHHHHHHHHhc------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 322 RGISGGERKRVTTGEMMVG------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~------~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
+.|||||||||.+||.|+. ++++||||||||.||......+++..|++++. + ..|+.++|+.+-+..++|+|
T Consensus 134 ~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g-~~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 134 RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-G-GAVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-C-CcEEEEEccchHHHHhhhee
Confidence 5799999999999999975 44699999999999999999999999999974 3 55666889999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++||++..|++++++
T Consensus 212 vll~~Grv~a~g~p~~vl 229 (259)
T COG4559 212 VLLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeeCCeEeecCCHHHhc
Confidence 999999999999999876
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.08 Aligned_cols=209 Identities=32% Similarity=0.477 Sum_probs=175.7
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ +..+|+|+||++++| +++|+||||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP--SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCCccc
Confidence 35677777663 246999999999999 9999999999999999999998663 4899999998754
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ..++.++|++|++.+++.+||.|++.+....+. .+.++..+.++++++.++|.+..++.+ ..||||||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 136 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMR 136 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHH
Confidence 32 235678999999999999999999988655431 222333556889999999988777664 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999999999999999999999999999976 599999999986 46678999999986 6777654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=311.96 Aligned_cols=212 Identities=23% Similarity=0.365 Sum_probs=181.9
Q ss_pred CcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc----ceEEEecCCCC
Q 000556 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDN 236 (1426)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~----~~~~yv~Q~d~ 236 (1426)
+.+++++++|||+.|++||+++++|||||||||...++.|+..|+ +|+|.+||.+++.+... .-+||+||++.
T Consensus 13 ~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 13 SYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred hhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccch
Confidence 335578999999999999999999999999999999999999999 99999999999877653 35799999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
.|..+||+|||.-..+.+.... ...+.+...+.+|+.|+|.|+++..-
T Consensus 90 IFr~LtV~dNi~~vlE~~~~d~--------------------------------~~~~~~~~l~~LL~ef~i~hlr~~~a 137 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREKDL--------------------------------KKAERKEELDALLEEFHITHLRDSKA 137 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhcch--------------------------------hHHHHHHHHHHHHHHhchHHHhcCcc
Confidence 9999999999987655432100 00122345788999999999998654
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
. .||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+.. .+.-|+..-|...|+.+++||.+
T Consensus 138 ~-----sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~--rgiGvLITDHNVREtL~i~dRaY 210 (243)
T COG1137 138 Y-----SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD--RGIGVLITDHNVRETLDICDRAY 210 (243)
T ss_pred c-----ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh--CCceEEEccccHHHHHhhhheEE
Confidence 3 6999999999999999999999999999999999999999999999865 34445546788899999999999
Q ss_pred EecCCeEEEecChhhHHH
Q 000556 397 LLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1426)
++++|++..+|+++++.+
T Consensus 211 Ii~~G~vla~G~p~ei~~ 228 (243)
T COG1137 211 IISDGKVLAEGSPEEIVN 228 (243)
T ss_pred EEecCeEEecCCHHHHhc
Confidence 999999999999998864
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=329.13 Aligned_cols=208 Identities=24% Similarity=0.316 Sum_probs=175.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 56788887762 12369999999999999999999999999999999999865 35899999998754
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. .+++.++|++|++.+++..|++||+.+....+ ....++..+.++++++.+++.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 139 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLS 139 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCC
Confidence 31 13567899999998888899999998865433 1233344456889999999988777653 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|++ |++
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i 215 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHL 215 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 99999999999999999999999999999999999999999999777899999999986 57778999999986 554
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=342.58 Aligned_cols=218 Identities=25% Similarity=0.306 Sum_probs=179.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67899998884210 0113599999999999999999999999999999999998763 4799999998763
Q ss_pred c-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000556 909 Q-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~-------~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 979 (1426)
. ...++.+|||+|++. .+...||.||+.|..... ..+.++..++++++++.++|. +..++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 2 134567999999863 233479999998875432 233444456789999999997 556665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-G 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999999765 999999999987 57889999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999875
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=345.02 Aligned_cols=218 Identities=24% Similarity=0.347 Sum_probs=180.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p--~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS--KYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCEEc
Confidence 489999999885210 0123599999999999999999999999999999999998763 479999999775
Q ss_pred Cc-------------------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc
Q 000556 908 KQ-------------------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966 (1426)
Q Consensus 908 ~~-------------------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~ 966 (1426)
.+ ...++.+|||+|++ .+++ .||+||+.|..... ..+.++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 13456799999986 3554 59999998864322 223444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHH
Q 000556 967 -PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIF 1045 (1426)
Q Consensus 967 -~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~ 1045 (1426)
+..+.. +..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 4589999999999999999999999999999999999999999999999877999999999986 477
Q ss_pred hhcceEEEEecCcEEEEEcCC
Q 000556 1046 DAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1046 ~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999986 799999875
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=346.19 Aligned_cols=229 Identities=24% Similarity=0.364 Sum_probs=188.7
Q ss_pred cCCCCCccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeecceEEEeCCeEEEEEcCCCC
Q 000556 110 VGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPAS 189 (1426)
Q Consensus 110 ~~~~~p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GS 189 (1426)
..+..|.=.++|+|++.+-. ++++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y~---------------------------------~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSYG---------------------------------PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEeC---------------------------------CCCceecceeEEecCCCEEEEECCCCC
Confidence 46777888899999987742 224599999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHH
Q 000556 190 GKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266 (1426)
Q Consensus 190 GKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 266 (1426)
||||+|++|.+..+ . +|+|.+||.++++... |+.+|||||+..+| +.||.+||.++..- ..++.+.+.
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn~s----as~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGNPS----ASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCCCC----cCHHHHHHH
Confidence 99999999999998 5 8999999999987655 57899999976555 56999999998532 223445555
Q ss_pred HHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhHhhHHHHHHHHhcCCcEeE
Q 000556 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346 (1426)
Q Consensus 267 ~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vll 346 (1426)
|++-.. .| -...|++.++|.||+++.. |||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~--------------------------hd---~i~~l~~GY~T~VGerG~~-LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGL--------------------------HD---VISRLPDGYQTLVGERGLM-LSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCc--------------------------HH---HHHhccccchhhHhhcccc-cccchHHHHHHHHHHhcCCCeEE
Confidence 544211 11 1346889999999998874 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHHH
Q 000556 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 347 LDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~ 414 (1426)
+|||||.||+.|..++++.+.... .++|+|+. .|.. .+..-||+|++|++|++...|++++++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~I-vH~l-~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMI-VHRL-DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEE-Eecc-hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999998843 45666664 4543 5678899999999999999999999875
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=328.19 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=173.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (213)
T cd03262 2 EIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTD 66 (213)
T ss_pred EEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCc
Confidence 5677877763 2469999999999999999999999999999999999865 347999999987632
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 910 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 910 -----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
...++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 139 (213)
T cd03262 67 DKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGG 139 (213)
T ss_pred cchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHH
Confidence 2245679999999998899999999987642111 1223344566889999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++|
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g 211 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDG 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 577889999999863
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=343.00 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=180.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 67899998884210 0113599999999999999999999999999999999998764 4799999986531
Q ss_pred ---------------------------cccccceEEEeccCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 000556 909 ---------------------------QETFARISGYCEQND-IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960 (1426)
Q Consensus 909 ---------------------------~~~~~~~~gyv~q~~-~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l 960 (1426)
....++.+|||+|++ ..+...||+|++.|..... ..+.++.++++++++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 112456799999985 2334579999998865432 234455566789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000556 961 ELVELK-PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039 (1426)
Q Consensus 961 ~~l~L~-~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq 1039 (1426)
+.+||. +..++. +..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|+|||+++|+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 35799999999999999999999999999999999999999999999998779999999999
Q ss_pred CCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1040 PGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1040 ~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+. ++.+.+|++++|++ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 86 57789999999985 789999885
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=341.32 Aligned_cols=217 Identities=26% Similarity=0.351 Sum_probs=180.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67899998884210 0113599999999999999999999999999999999998763 4899999998864
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000556 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1426)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 978 (1426)
. ..+++.+|||+|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 1 12456799999986 3444 69999999875432 234455566789999999996 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 689999999999999999999999999999999999999999999999877999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 221 ~i~~~g~~ 228 (288)
T PRK13643 221 HIISCGTP 228 (288)
T ss_pred EEEEECCH
Confidence 99999985
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=333.24 Aligned_cols=214 Identities=27% Similarity=0.359 Sum_probs=180.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 67788887763 2469999999999999999999999999999999999865 34799999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
.. ..++.++|++|++.+++.+||.||+.+....+. ..+.++.+..++++++.+++.+..+.. .+.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 31 134568999999988888999999987543321 122334456788999999998776665 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999986 58889999999985 7898888
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=347.37 Aligned_cols=206 Identities=25% Similarity=0.372 Sum_probs=176.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 45999999999999999999999999999999999999998 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999987554332100 0011235667899999988887765
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
+|||||||||+||+||+++|++++|||||+|||+.++.++.+.|+++.. . +++|+.++|..+++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~-g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4455557888999999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
++++|+.+++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998764
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=314.04 Aligned_cols=212 Identities=26% Similarity=0.379 Sum_probs=179.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|++..| ++.++|+|||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++.
T Consensus 4 L~v~~l~~~Y-------------G~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit 68 (237)
T COG0410 4 LEVENLSAGY-------------GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDIT 68 (237)
T ss_pred eeEEeEeecc-------------cceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecC
Confidence 5677776555 456899999999999999999999999999999999998763 4799999999876
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCH
Q 000556 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ..++-++||||....||.+||+|||..++..+.. ++..+..++++.+.+ .|.+.++++.| .|||
T Consensus 69 ~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSG 139 (237)
T COG0410 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSG 139 (237)
T ss_pred CCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCCh
Confidence 53 2456789999999999999999999987655422 112222267777777 47777777754 6999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||.++|||||+++|++|+|||||.||-|.-...|.++|+++.++ |.||+.+-++.. ...+.+||.++|.+ |++++
T Consensus 140 GEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~ 217 (237)
T COG0410 140 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVL 217 (237)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999999866 779999998876 47789999999985 89999
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 218 ~G~~ 221 (237)
T COG0410 218 SGTA 221 (237)
T ss_pred ecCH
Confidence 9985
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=330.59 Aligned_cols=217 Identities=24% Similarity=0.294 Sum_probs=172.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+.... ....+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~v~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (228)
T cd03257 2 LEVKNLSVSFPTGG---------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLL 70 (228)
T ss_pred eEEEeeeEeccCCC---------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcc
Confidence 56788887763110 01269999999999999999999999999999999999865 34799999998764
Q ss_pred c------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000556 909 Q------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 979 (1426)
. ..+++.++|++|++ .+.+.+||+||+.+......+. ...+..+..++++++.+++. +..+.. +.
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 144 (228)
T cd03257 71 KLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PH 144 (228)
T ss_pred ccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----ch
Confidence 3 13456799999998 4567899999998765433211 11111122236889999995 455655 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G 222 (228)
T cd03257 145 ELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-G 222 (228)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999876 899999999986 56678999999985 6
Q ss_pred EEEEEc
Q 000556 1059 QEIYVG 1064 (1426)
Q Consensus 1059 ~~v~~G 1064 (1426)
+++..|
T Consensus 223 ~i~~~g 228 (228)
T cd03257 223 KIVEEG 228 (228)
T ss_pred EEEecC
Confidence 777654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=332.80 Aligned_cols=214 Identities=24% Similarity=0.322 Sum_probs=178.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 905 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 905 (1426)
+.++|+++.++ +..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 2 IEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred EEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 56788887763 235999999999999999999999999999999999986532 12799999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccCC
Q 000556 906 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGLP 976 (1426)
Q Consensus 906 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~~ 976 (1426)
+... ...++.++|++|++.+++ .|++||+.+....+. ..+..+.++.++++++.+||. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 141 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS---- 141 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC----
Confidence 7643 123567999999998888 999999988654331 122344456688999999997 545544
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 142 -~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~ 218 (247)
T TIGR00972 142 -ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD 218 (247)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC
Confidence 458999999999999999999999999999999999999999999999976 499999999986 57788999999986
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 219 -G~i~~~~~~ 227 (247)
T TIGR00972 219 -GELVEYGPT 227 (247)
T ss_pred -CEEEEeCCH
Confidence 788888874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=334.28 Aligned_cols=215 Identities=20% Similarity=0.272 Sum_probs=181.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 478999988773 24699999999999999999999999999999999998653 479999999865
Q ss_pred Cc----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-c
Q 000556 908 KQ----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-Q 970 (1426)
Q Consensus 908 ~~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 970 (1426)
.. ..+++.++|++|++.+++.+||+||+.+...... .......++++.++++.+|+.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 1235678999999999999999999987542111 123344556788999999998753 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcce
Q 000556 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDE 1050 (1426)
Q Consensus 971 ~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~ 1050 (1426)
.. ...||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 4689999999999999999999999999999999999999999999999877999999999986 57778999
Q ss_pred EEEEecCcEEEEEcCC
Q 000556 1051 LFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1051 v~ll~~gg~~v~~G~~ 1066 (1426)
+++|++ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999986 789988874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=317.83 Aligned_cols=207 Identities=27% Similarity=0.387 Sum_probs=180.6
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCccc----ccceEEEeccCCCCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET----FARISGYCEQNDIHSP 927 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~----~~~~~gyv~q~~~~~~ 927 (1426)
+...+++|||+++++||++||+||||||||||+|+|+|...+ .+|+|.++|.++.... .+.-++.-+|...+++
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~ 92 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFP 92 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeecccccccC
Confidence 567899999999999999999999999999999999998774 4899999999876532 2445788899999999
Q ss_pred CCCHHHHHHHHHHhcC--------CCC-CCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000556 928 FVTVYESLLYSAWLRL--------PPE-VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVAN 998 (1426)
Q Consensus 928 ~lTv~e~l~f~a~lr~--------~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~ 998 (1426)
.+||.||+..++..+. +.. ...++..++..++|+.+||.+.+|...| +||+||||||.|||||+.+
T Consensus 93 ~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArALa~~ 167 (250)
T COG0411 93 GLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQ 167 (250)
T ss_pred CCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHHhcC
Confidence 9999999998755331 111 1234556678899999999999999865 6999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 999 p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
|++|+||||.+||.+.....+.+.|+++.++ |.||+++-|+++. ++.+||||+||+. |+++..|++.
T Consensus 168 P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 168 PKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred CCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999874 7999999999984 8999999999986 7999999863
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.71 Aligned_cols=199 Identities=26% Similarity=0.420 Sum_probs=164.6
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCC--CCCCH
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHS--PFVTV 931 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~--~~lTv 931 (1426)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. ...||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999998653 4799999998654 2456789999998763 33799
Q ss_pred HHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000556 932 YESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsg 1010 (1426)
+||+.+....+... ....+..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 99998754321100 0112233456889999999988777664 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877999999999986 57788999999975 4 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=327.05 Aligned_cols=200 Identities=29% Similarity=0.430 Sum_probs=167.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999987 9999999988754332 3579999999888999999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.++....+... .+....++.+++.+||++..++.+ ..
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03259 90 AENIAFGLKLRGVPK----------------------------------AEIRARVRELLELVGLEGLLNRYP-----HE 130 (213)
T ss_pred HHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 999988643221100 001123567789999987766554 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999986533 44555578888889999999999999999
Q ss_pred EEec
Q 000556 404 VYQG 407 (1426)
Q Consensus 404 v~~G 407 (1426)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=339.31 Aligned_cols=215 Identities=26% Similarity=0.379 Sum_probs=181.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-+.++|+++.++ +++.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 488999998873 12359999999999999999999999999999999999866 3589999999876
Q ss_pred Cc-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000556 908 KQ-----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1426)
Q Consensus 908 ~~-----~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 981 (1426)
.. ..+++.+||++|++.. +...||+|++.+..... ..+.+...+.++++++.+||.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 31 2345679999999742 34579999998764322 223444456789999999999877776 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 982 SgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
|||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 46678999999986 789
Q ss_pred EEEcCC
Q 000556 1061 IYVGPL 1066 (1426)
Q Consensus 1061 v~~G~~ 1066 (1426)
++.|+.
T Consensus 221 ~~~g~~ 226 (283)
T PRK13636 221 ILQGNP 226 (283)
T ss_pred EEeCCH
Confidence 999985
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=327.57 Aligned_cols=193 Identities=25% Similarity=0.366 Sum_probs=163.7
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCC-CCCCC
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDI-HSPFV 929 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~-~~~~l 929 (1426)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 469999999999999999999999999999999999865 347999999987543 224567899999974 35678
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000556 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1426)
Q Consensus 930 Tv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTs 1009 (1426)
|++||+.+....+ .......++.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 1223334456889999999987777663 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 1010 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
|||+.++..+.+.|++++++|+|||+++|++. ++...+|++++|++|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999986 577789999999864
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=327.44 Aligned_cols=205 Identities=29% Similarity=0.386 Sum_probs=172.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999887 999999998764321 1356899999998999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.....+... .+....++.+++.+||++..++.+ +
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLV-----K 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence 9999998654322100 011224577899999987777655 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999986532 4455667888889999999999999999
Q ss_pred EEEecChhhH
Q 000556 403 IVYQGPRELV 412 (1426)
Q Consensus 403 iv~~G~~~~~ 412 (1426)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=340.23 Aligned_cols=217 Identities=21% Similarity=0.328 Sum_probs=179.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 67899998884210 0123599999999999999999999999999999999998763 4799999998764
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000556 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1426)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 978 (1426)
. ...++.+|||+|++ .+++ .||.||+.|..... ..+.++.+++++++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 13456799999986 3444 59999998865332 233445566789999999996 566655 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.+|++++|++
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 68999999999999999999999999999999999999999999999976 4899999999986 57789999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 799998875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=327.17 Aligned_cols=211 Identities=25% Similarity=0.332 Sum_probs=173.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++.. .+.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 70 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLS 70 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhh
Confidence 5678888776421 0124699999999999999999999999999999999998663 4899999998764
Q ss_pred ccc------cc-ceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000556 909 QET------FA-RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1426)
Q Consensus 909 ~~~------~~-~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 981 (1426)
... ++ +.++|++|++.+++.+|++|++.+....+. .......+.+.++++.+|+.+..++.+ ..|
T Consensus 71 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 142 (221)
T TIGR02211 71 KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SEL 142 (221)
T ss_pred hcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 311 12 568999999988889999999988654331 222333456789999999988777663 579
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 982 SgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++ +.+|++++|++ |++
T Consensus 143 S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i 219 (221)
T TIGR02211 143 SGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQL 219 (221)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEe
Confidence 999999999999999999999999999999999999999999999764 899999999986 34 55799999986 565
Q ss_pred E
Q 000556 1061 I 1061 (1426)
Q Consensus 1061 v 1061 (1426)
+
T Consensus 220 ~ 220 (221)
T TIGR02211 220 F 220 (221)
T ss_pred c
Confidence 3
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=338.27 Aligned_cols=218 Identities=25% Similarity=0.387 Sum_probs=177.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-----ccceEEEecCCCC-CC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN-HI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 238 (1426)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999998 999999999886532 2357999999863 44
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc--ccccccc
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE--VCADTMV 316 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 316 (1426)
..+||+||+.|+....+.. ..+....++++++.+||+ +..|+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~-- 140 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDK-- 140 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccC--
Confidence 5689999999865332210 011223467789999997 44554
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
.++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++.++||+|+
T Consensus 141 ---~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 141 ---SPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ---CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 34579999999999999999999999999999999999999999999998653 34556667888889999999999
Q ss_pred EecCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000556 397 LLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1426)
+|++|+++++|+.+++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23344555543
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=333.21 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=176.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 489999998873 23599999999999999999999999999999999998653 479999999765
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
. ..++.++|++|++.+++.+||+||+.+... . ..++.++++++.++|.+..+..+ ..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHH
Confidence 3 235678999999988888999999987421 0 12345788999999988777663 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999986 57788999999986 788887764
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=338.77 Aligned_cols=216 Identities=23% Similarity=0.303 Sum_probs=182.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++.. ..+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 37889999887421 123599999999999999999999999999999999998763 489999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++.+++++++++.+||.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 43 234567999999973 567789999998865432 2344455567899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 35 67999999985 79998
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=335.78 Aligned_cols=208 Identities=25% Similarity=0.336 Sum_probs=174.6
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD 235 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d 235 (1426)
....+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 4567999999999999999999999999999999999999987 9999999988754321 24699999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1426)
.+++.+||+||+.++....+... .+....++++++.+||.+..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPR----------------------------------AEREERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCC
Confidence 88989999999998654322100 00112356788999998777766
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
++ .|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++++..+ .+|+.++|+.+++.+++|+|
T Consensus 158 ~~-----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g-~tiii~tH~~~~~~~~~d~v 231 (269)
T cd03294 158 PD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQ-KTIVFITHDLDEALRLGDRI 231 (269)
T ss_pred cc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEE
Confidence 54 6999999999999999999999999999999999999999999999865334 45555778888899999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=328.45 Aligned_cols=212 Identities=26% Similarity=0.395 Sum_probs=177.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~i~ 66 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA--QEGQISVAGHDLR 66 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEcc
Confidence 46778877663 24699999999999999999999999999999999998653 4899999998754
Q ss_pred cc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 QE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
.. ...+.++|++|++.+++.+|++|++.+....+ ........+.++++++.+||.+..++.+ ..||||||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 138 (236)
T TIGR03864 67 RAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHR 138 (236)
T ss_pred cCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHH
Confidence 31 22346899999998888999999998765433 1223334456889999999988777664 57999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||+++|++. ++ ..+|++++|++ |+++..|+
T Consensus 139 qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~ 215 (236)
T TIGR03864 139 RRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGA 215 (236)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999986 35 45999999985 78888876
Q ss_pred C
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
.
T Consensus 216 ~ 216 (236)
T TIGR03864 216 A 216 (236)
T ss_pred H
Confidence 4
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=330.81 Aligned_cols=212 Identities=22% Similarity=0.321 Sum_probs=177.9
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA--TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CCceEEECCEec
Confidence 378899988763 24699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000556 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~vg~~~~~~LS 982 (1426)
... ..++.++|++|+..+++.+||.||+.+..... .....++.++++++.+ ++.+..+.. ...||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 432 13457999999998899899999998754221 1122334567788887 476655554 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999986 58899999999986 79999
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9875
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=332.19 Aligned_cols=214 Identities=23% Similarity=0.311 Sum_probs=180.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.+. .+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 35788887763 24699999999999999999999999999999999998663 4899999998753
Q ss_pred c----------------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc
Q 000556 909 Q----------------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972 (1426)
Q Consensus 909 ~----------------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~ 972 (1426)
. ...++.++|++|++.+++..|+.||+.+..... ........++.++++++.+++.+..+..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 2 123567999999999999999999998753211 1123344456788999999998877765
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceE
Q 000556 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 973 vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v 1051 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++...+|++
T Consensus 144 -----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i 217 (252)
T TIGR03005 144 -----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRV 217 (252)
T ss_pred -----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 577889999
Q ss_pred EEEecCcEEEEEcCC
Q 000556 1052 FLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1052 ~ll~~gg~~v~~G~~ 1066 (1426)
++|++ |+++..|+.
T Consensus 218 ~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 218 CFFDK-GRIVEQGKP 231 (252)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 789888874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=324.82 Aligned_cols=208 Identities=24% Similarity=0.327 Sum_probs=177.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~ 66 (223)
T TIGR03740 2 ETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTR 66 (223)
T ss_pred EEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccc
Confidence 4677776653 2469999999999999999999999999999999999865 358999999987643
Q ss_pred ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHH
Q 000556 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRL 989 (1426)
Q Consensus 910 ~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl 989 (1426)
.. .+.++|++|++.+++.+|++||+.+....+. .+ +..+.++++.+++.+..+..+ ..||+|||||+
T Consensus 67 ~~-~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv 133 (223)
T TIGR03740 67 KD-LHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRL 133 (223)
T ss_pred cc-cccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHH
Confidence 22 2468999999988888999999987654331 11 234788999999998777763 57999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 990 TIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 990 ~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|+..
T Consensus 134 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 134 GIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999999999999999999999999999877999999999986 57789999999985 7899998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=330.08 Aligned_cols=213 Identities=24% Similarity=0.326 Sum_probs=179.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 67888887763 2359999999999999999999999999999999999865 35799999998652
Q ss_pred ------c---ccccceEEEeccCCCCCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 909 ------Q---ETFARISGYCEQNDIHSPFVTVYESLLYS-AWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 909 ------~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~-a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
. ...++.++|++|++.+++.+|+.||+.+. .... .....+..+.+.++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 0 12345789999999999999999999753 2221 1223334456889999999988777764
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 56788999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 89988875
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=335.87 Aligned_cols=224 Identities=26% Similarity=0.374 Sum_probs=180.5
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCC-CC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHD-NH 237 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d-~~ 237 (1426)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999988 999999999875211 135799999986 24
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMV 316 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1426)
+...||.||+.|+....+... .+...++.++++.+||. +..++
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~-- 140 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEK-- 140 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccC--
Confidence 445799999998764332100 01123456788999996 34443
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ . +.+|+.++|+..++.+++|+|+
T Consensus 141 ---~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 141 ---SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-S-GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ---CcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 4457999999999999999999999999999999999999999999998764 3 4456667888889999999999
Q ss_pred EecCCeEEEecChhhHH---HHHHhcCCCCCCCCChhHHH
Q 000556 397 LLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFL 433 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~---~~F~~~Gf~cp~~~~~adfl 433 (1426)
+|++|+++++|+++++. ++++..|+.+|.....++.+
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 99999999999999874 34556777777655544443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=329.70 Aligned_cols=210 Identities=28% Similarity=0.386 Sum_probs=172.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 45999999999999999999999999999999999999887 9999999988754332 3579999999988889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.++....+...+. + ..+....++.+++.+||++..++.+ ..
T Consensus 92 ~e~l~~~~~~~~~~~~~-------------------~-----------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERP-------------------P-----------EAEIRAKVHELLKLVQLDWLADRYP-----AQ 136 (239)
T ss_pred HHHHhhhhhhccccccC-------------------C-----------HHHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence 99999865432110000 0 0001123567889999987666554 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|+..++.+.+|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-vii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVT-TVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999986533444 55577777888999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
++.|+.+++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-35 Score=336.41 Aligned_cols=213 Identities=22% Similarity=0.304 Sum_probs=179.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++ +++.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 67 (274)
T PRK13644 2 IRLENVSYSYP------------DGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTG 67 (274)
T ss_pred EEEEEEEEEcC------------CCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECC
Confidence 56788887763 12359999999999999999999999999999999999866 35899999998764
Q ss_pred c----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 909 Q----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ~----~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
. ...++.+||++|++. .+...|+.||+.|..... ..+....++.++++++.++|.+..++.+ ..||+
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~ 139 (274)
T PRK13644 68 DFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSG 139 (274)
T ss_pred ccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCH
Confidence 3 223567999999975 356689999998765432 2234444567899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||++||+||+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 140 G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~ 216 (274)
T PRK13644 140 GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLE 216 (274)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEE
Confidence 9999999999999999999999999999999999999999999877999999999986 45 67999999986 789999
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 217 g~~ 219 (274)
T PRK13644 217 GEP 219 (274)
T ss_pred CCH
Confidence 885
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=337.68 Aligned_cols=219 Identities=24% Similarity=0.307 Sum_probs=179.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.+.... ...+.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 71 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHI 71 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 367888888774110 0013599999999999999999999999999999999998763 589999999875
Q ss_pred Cc-------ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000556 908 KQ-------ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1426)
Q Consensus 908 ~~-------~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 978 (1426)
.. ...++.+||++|++. .+..+||.|++.|....+ ....++..++++++++.+||. +..++.+
T Consensus 72 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~----- 143 (287)
T PRK13641 72 TPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP----- 143 (287)
T ss_pred ccccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----
Confidence 32 123457899999963 233579999998765432 223444556789999999997 5666663
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
+.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|++ |
T Consensus 144 ~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G 221 (287)
T PRK13641 144 FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-G 221 (287)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57889999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (287)
T PRK13641 222 KLIKHASP 229 (287)
T ss_pred EEEEeCCH
Confidence 89988874
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=331.43 Aligned_cols=215 Identities=22% Similarity=0.247 Sum_probs=177.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.+.++|+++.++ ++.+|+|||+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 588999988773 235999999999999999999999999999999999976532 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++..++ .||+||+.+....+. .......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87532 124567999999988775 899999988654321 112333456688899999884 334443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999996 4799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 224 ~-G~i~~~g~~ 233 (254)
T PRK14273 224 N-GCIEEESST 233 (254)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=340.98 Aligned_cols=229 Identities=21% Similarity=0.244 Sum_probs=184.9
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-++++|++.+++............+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 488999988775321000000001235699999999999999999999999999999999998763 489999999886
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000556 908 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1426)
Q Consensus 908 ~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 978 (1426)
... .+++.++||+|++ .++|.+||.|++.+......+ ..+.++.++.+.++++.++|. +..++. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 432 2356799999997 578899999999886543221 234555667788999999995 355554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
..||||||||++||+||+.+|++|++||||+|||..++..+++.|+++.++ |.|||++||++. .+.+.+|++++|.+
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~- 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL- 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999999765 999999999986 47788999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 799999985
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.47 Aligned_cols=214 Identities=24% Similarity=0.297 Sum_probs=177.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|..++. +.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 588999988763 245999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ..+++.++|++|++.+++ .|++||+.+....+ ..+.+..++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 124567999999988887 89999998865432 1233344456888999999843 33433
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|+
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |++++.|+.
T Consensus 228 ~-G~i~~~~~~ 237 (258)
T PRK14268 228 M-GELIEFGQT 237 (258)
T ss_pred C-CEEEEeCCH
Confidence 5 789998874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=329.53 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=176.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 35778877763 24699999999999999999999999999999999997411145899999998764
Q ss_pred cc---cc-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000556 909 QE---TF-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP----EVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~~---~~-~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 979 (1426)
.. .. +..++|++|++..++.+|++|++.+........ ..+.....+.++++++.++|. +..+..++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 32 11 234899999999999999999998764322110 112233345688999999997 45555432 2
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhh-cceEEEEecCc
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGG 1058 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~-fD~v~ll~~gg 1058 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++... +|++++|++ |
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G 221 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-G 221 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-C
Confidence 59999999999999999999999999999999999999999999999877999999999986 46666 799999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (243)
T TIGR01978 222 RIVKSGDV 229 (243)
T ss_pred EEEEecCH
Confidence 89988874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.16 Aligned_cols=216 Identities=23% Similarity=0.281 Sum_probs=178.8
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 905 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 905 (1426)
+.++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 67888887763 246999999999999999999999999999999999976431 35899999998
Q ss_pred cCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccCCCC
Q 000556 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGLPGV 978 (1426)
Q Consensus 906 ~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~~~~ 978 (1426)
++.. ..+++.+||++|++.+++.+||.||+.+....+.. ..+..+..+.++++++.++|.+. .++. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7643 23456789999999888899999999886543211 11223345568899999998642 3333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|++ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999864 899999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 88888875
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=340.41 Aligned_cols=206 Identities=27% Similarity=0.385 Sum_probs=173.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 45999999999999999999999999999999999999987 999999998865322 2467999999998999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999987543221100 0011234567899999988777664
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+.+++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~-g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-R-GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-C-CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999999864 3 4456667888889999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+.+++.+
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-35 Score=335.07 Aligned_cols=214 Identities=24% Similarity=0.352 Sum_probs=180.5
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++. +..+|+||||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 678888887731 2349999999999999999999999999999999999866 35899999998764
Q ss_pred c---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 Q---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
. ...++.+||++|++. .+...||.||+.+..... ..+.+..++.++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 3 234567899999974 234579999998765422 2334445567899999999998877764 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999875 899999999987 57789999999986 789999
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 875
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=330.93 Aligned_cols=217 Identities=24% Similarity=0.268 Sum_probs=179.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
-++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 378899988773 235999999999999999999999999999999999986542 3489999999
Q ss_pred ccCC--c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000556 905 YPKK--Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL----IQSLVGL 975 (1426)
Q Consensus 905 ~~~~--~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~vg~ 975 (1426)
.++. . ..+++.++|++|++.+++.+||.||+.+....+. ...+.+..++.++++++.+++.+. .+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8764 1 2345679999999999999999999988654321 111233344568889999998532 3332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 699999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 799998875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=305.13 Aligned_cols=216 Identities=26% Similarity=0.374 Sum_probs=181.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
|..+|++|++. .+.+|++||++++|||++||+|||||||||||++|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 56788998874 35799999999999999999999999999999999998764 4799999999876
Q ss_pred cc---cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 909 QE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 909 ~~---~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
+. ...+..+..+|+..+..-.||+|-+.++..-... .-..++..+.++++|...++.+++... ...|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~-----y~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRD-----YRTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccc-----hhhcCchH
Confidence 53 3456678999998876667999999987432211 111123344578999999999988765 46899999
Q ss_pred HHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 986 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 986 rqRl~iA~~L~~------~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++.||.+. ...++|+|++|++ |+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-Ce
Confidence 999999999975 356999999999999999999999999999999999999999985 6789999999985 89
Q ss_pred EEEEcCCC
Q 000556 1060 EIYVGPLG 1067 (1426)
Q Consensus 1060 ~v~~G~~~ 1067 (1426)
++..|+..
T Consensus 219 v~a~g~p~ 226 (259)
T COG4559 219 VIASGSPQ 226 (259)
T ss_pred EeecCCHH
Confidence 99999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=328.70 Aligned_cols=215 Identities=25% Similarity=0.368 Sum_probs=173.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 45999999999999999999999999999999999999887 9999999998765432 2458999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++....+... ... .. ...+ ..+....++++++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~---~~---~~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLL---AR---ARRE-----------EREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhccccc-------ccc---cc---cccc-----------HHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999998754321100 000 00 0000 0012234677899999987666544
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+ ++|+.++|+..++.+++|+|++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RG-ITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEecCHHHHHHhCCEEEEEeC
Confidence 57999999999999999999999999999999999999999999999865 34 4455578888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=331.78 Aligned_cols=217 Identities=22% Similarity=0.264 Sum_probs=180.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 378899988763 2469999999999999999999999999999999999865 3589999999876
Q ss_pred Ccc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC----------C--CCCHHHHHHHHHHHHHHcCCcccccc
Q 000556 908 KQE---T-FARISGYCEQNDIHSPFVTVYESLLYSAWLRLP----------P--EVDSETRKMFIEEVMELVELKPLIQS 971 (1426)
Q Consensus 908 ~~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~----------~--~~~~~~~~~~v~~~l~~l~L~~~~~~ 971 (1426)
... . .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+|+.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 432 1 233479999999999999999999886431110 0 00112233567889999999877776
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcce
Q 000556 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDE 1050 (1426)
Q Consensus 972 ~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~ 1050 (1426)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 64 579999999999999999999999999999999999999999999999775 899999999986 57788999
Q ss_pred EEEEecCcEEEEEcCC
Q 000556 1051 LFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1051 v~ll~~gg~~v~~G~~ 1066 (1426)
+++|++ |++++.|+.
T Consensus 224 i~~l~~-g~i~~~~~~ 238 (255)
T PRK11300 224 IYVVNQ-GTPLANGTP 238 (255)
T ss_pred EEEEEC-CeEEecCCH
Confidence 999985 789988875
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-35 Score=323.12 Aligned_cols=200 Identities=30% Similarity=0.419 Sum_probs=167.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 35899999999999999999999999999999999999887 9999999988754332 3579999999988889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.++.+..+... .+....++.+++.+||++..+..+ +.
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (213)
T cd03301 90 YDNIAFGLKLRKVPK----------------------------------DEIDERVREVAELLQIEHLLDRKP-----KQ 130 (213)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhCCh-----hh
Confidence 999988654321100 011224567889999987777655 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+. +|+.++|+.+++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tvi~~sH~~~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGT-TTIYVTHDQVEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998753344 455577888889999999999999999
Q ss_pred EEec
Q 000556 404 VYQG 407 (1426)
Q Consensus 404 v~~G 407 (1426)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=327.65 Aligned_cols=205 Identities=28% Similarity=0.377 Sum_probs=172.2
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHIG 239 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 239 (1426)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 9999999998764321 356999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+|++||+.+.....+... .+....++.+++.+||++..+..+
T Consensus 96 ~~t~~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVPK----------------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 9999999988654322100 001123567889999987766544
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINREL-GLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4799999999999999999999999999999999999999999999876533 4455557777888899999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=331.24 Aligned_cols=213 Identities=25% Similarity=0.353 Sum_probs=178.8
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+||++++|++++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 67888887763 2469999999999999999999999999999999999865 35799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
. ...++.++|++|++.+++.+||+|++.+..... ....+..++.++++++.+++.+..++.+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 3 123456899999988878899999998754221 1112233456889999999988777764 5799999
Q ss_pred HHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 986 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 986 rqRl~iA~~L~------~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
|||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999997 56999999999986 57789999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 88888875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-35 Score=324.11 Aligned_cols=201 Identities=28% Similarity=0.382 Sum_probs=168.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999887 9999999988753 246799999999888889999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
||+.++....+... .+....++.+++.+||++..+..+ ..|
T Consensus 92 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------------------------------AEARERAEELLELVGLSGFENAYP-----HQL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc-----ccC
Confidence 99988654322100 001124567889999987766554 469
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec--CCe
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~--~G~ 402 (1426)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+ ++|+.++|+.+++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETG-KTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcC-CEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 99999999999999999999999999999999999999999998754334 445557777788899999999999 799
Q ss_pred EEEecChh
Q 000556 403 IVYQGPRE 410 (1426)
Q Consensus 403 iv~~G~~~ 410 (1426)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=322.78 Aligned_cols=208 Identities=25% Similarity=0.327 Sum_probs=172.0
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ .+. .|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++..
T Consensus 2 ~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~ 64 (211)
T cd03298 2 RLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTA 64 (211)
T ss_pred EEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCc
Confidence 5677777663 122 39999999999999999999999999999999875 347999999987643
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
. ..++.++|++|++.+++.+|++||+.+....+. .. .+..++.++++++.++|.+..++.+ ..||||||||
T Consensus 65 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 136 (211)
T cd03298 65 APPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQR 136 (211)
T ss_pred CCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHH
Confidence 2 234679999999999999999999987543211 11 1233456889999999988777764 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 137 v~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 99999999999999999999999999999999999999754 899999999986 57788999999986 6776543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=318.27 Aligned_cols=196 Identities=29% Similarity=0.563 Sum_probs=164.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 906 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 906 (1426)
.++|+|++|.++.+. +++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~~---------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKGR---------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccCC---------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 589999999997531 2457999999999999999999999999999999999986532 468999999987
Q ss_pred CCcc--cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 907 KKQE--TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 907 ~~~~--~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
.... ..++.++|++|++.+++.+||+|++.+....+ .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 6432 34567999999999999999999998753211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777776654468889999999986 788765
Q ss_pred c
Q 000556 1064 G 1064 (1426)
Q Consensus 1064 G 1064 (1426)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=346.23 Aligned_cols=207 Identities=24% Similarity=0.324 Sum_probs=175.9
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1426)
...+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999998 9999999998865432 246999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
+++.+||+||+.|+.+..+... .+....++++++.+||++..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------------------------------EERREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998765432110 001224567899999987766554
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|+
T Consensus 163 -----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~ 236 (400)
T PRK10070 163 -----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIA 236 (400)
T ss_pred -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEE
Confidence 5799999999999999999999999999999999999999999999886533 4455557888899999999999
Q ss_pred EecCCeEEEecChhhHH
Q 000556 397 LLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999988764
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=337.32 Aligned_cols=218 Identities=22% Similarity=0.337 Sum_probs=175.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------CccceEEEecCCCC-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------VPERTAAYISQHDN- 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~- 236 (1426)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45899999999999999999999999999999999999988 99999999987531 11357999999852
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1426)
.+...||+||+.|+....+... .+....++.+++.+||. +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 3445799999998754322100 01123467789999997 455544
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|+.+++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~-g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 -----PFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEK-GLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45799999999999999999999999999999999999999999999986533 455666888889999999999
Q ss_pred EEecCCeEEEecChhhHHH---HHHhcCCCCCC
Q 000556 396 ILLSDGQIVYQGPRELVLE---FFESMGFKCPK 425 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~ 425 (1426)
++|++|++++.|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999887642 33344554443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.70 Aligned_cols=215 Identities=26% Similarity=0.317 Sum_probs=178.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ .+.+|+|+||++++||+++|+|+|||||||||++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 67 (242)
T TIGR03411 3 LYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLT 67 (242)
T ss_pred EEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecC
Confidence 56788877663 24699999999999999999999999999999999998653 4799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP--P---EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~--~---~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.. ..++.++|++|++.+++.+||+||+.+....... . ....+..+++++++++.+|+.+..+..+ +
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (242)
T TIGR03411 68 GLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----G 142 (242)
T ss_pred CCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence 31 1234699999999999999999999875432100 0 0112234456899999999988777664 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.||++++|++ |+
T Consensus 143 ~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~ 219 (242)
T TIGR03411 143 LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GS 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-Ce
Confidence 7999999999999999999999999999999999999999999999876 799999999986 57788999999986 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 220 ~~~~~~~ 226 (242)
T TIGR03411 220 VLAEGSL 226 (242)
T ss_pred EEeeCCH
Confidence 8888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=330.36 Aligned_cols=207 Identities=21% Similarity=0.334 Sum_probs=172.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1426)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++..+
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 45899999999999999999999999999999999999987 9999999988754321 35689999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||.||+.+......... . .+....++.+++.+||++..++.+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 141 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLP---------A------------------------PLLHSTVMMKLEAVGLRGAAKLMP-- 141 (269)
T ss_pred CCCCHHHHHHHHHHHccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999988542110000 0 001123566789999988777655
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.... +++|+.++|+.+++.+++|+|++|
T Consensus 142 ---~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 142 ---SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSAL-GVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhhCEEEEE
Confidence 4699999999999999999999999999999999999999999999986533 445555778888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=334.74 Aligned_cols=214 Identities=26% Similarity=0.327 Sum_probs=181.0
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 789999887741 123599999999999999999999999999999999998763 4899999998765
Q ss_pred cc---cccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 QE---TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~~---~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
.. ..++.+||++|++. .++..||.||+.+..... ....++.+++++++++.+||.+..++.+ ..||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 32 23567999999973 566789999998865432 1233444567899999999998888774 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++ ..+|++++|++ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999986 35 46999999985 789999
Q ss_pred cCC
Q 000556 1064 GPL 1066 (1426)
Q Consensus 1064 G~~ 1066 (1426)
|+.
T Consensus 222 g~~ 224 (279)
T PRK13635 222 GTP 224 (279)
T ss_pred CCH
Confidence 875
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=326.30 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=171.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999987 9999999988754332 2468999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 131 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKA---- 131 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh----
Confidence 999999987643221100 001224567889999987766554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.+++|+|++|++
T Consensus 132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-R-GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998864 3 44555577888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999987653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=342.14 Aligned_cols=212 Identities=27% Similarity=0.434 Sum_probs=179.1
Q ss_pred CCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcC
Q 000556 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 904 (1426)
.+..++|+||+++|. +++++|++|||+|++||.+||+|+|||||||++++|.+... .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999999985 24569999999999999999999999999999999998765 479999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------cccccc
Q 000556 905 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVG 974 (1426)
Q Consensus 905 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg 974 (1426)
.++++ ...|+.+|||||+..++. -||.+|+.|+. .+.+.+ +|-++.+..++.+. .+|.||
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 98765 457889999999988774 69999999863 233333 35666677666553 455677
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEE
Q 000556 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 975 ~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll 1054 (1426)
..| ..|||||||||+||||++++|+|+++|||||.||..+...+++.+.+. ..|+|+|++.|+. ++.+.||+|++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEE
Confidence 764 579999999999999999999999999999999999999999999984 4589999999996 478999999999
Q ss_pred ecCcEEEEEcCC
Q 000556 1055 KRGGQEIYVGPL 1066 (1426)
Q Consensus 1055 ~~gg~~v~~G~~ 1066 (1426)
++ |++...|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 96 688888875
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=323.69 Aligned_cols=201 Identities=26% Similarity=0.345 Sum_probs=166.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 9999999998765432 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.+.....+... .+.+..++.+++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998654221100 001224567899999987766554
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+.||||||||++||++++.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQ-GTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHh-hCEEEE
Confidence 4699999999999999999999999999999999999999999999876433 4455556777777665 589999
Q ss_pred ecCCeEEEecCh
Q 000556 398 LSDGQIVYQGPR 409 (1426)
Q Consensus 398 L~~G~iv~~G~~ 409 (1426)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=329.35 Aligned_cols=217 Identities=18% Similarity=0.250 Sum_probs=179.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.+.++|+++.++ .+.+|+|+|+++++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 378899988873 246999999999999999999999999999999999976432 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++.+||+||+.+....+. ..+.+..++.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87531 2345679999999999999999999987654331 1123344556889999999853 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 468999999999999999999999999999999999999999999999864 699999999986 5778999999997
Q ss_pred c-----CcEEEEEcCC
Q 000556 1056 R-----GGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~-----gg~~v~~G~~ 1066 (1426)
+ .|++++.|+.
T Consensus 222 ~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 222 LEATGKPGRLVEIDDT 237 (258)
T ss_pred cccCCCCceEEecCCH
Confidence 2 4899998875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=327.47 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=176.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCC---CCceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK---TGGYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~---~~~~~~G~i~i~g 904 (1426)
.++++|+++.+. .+.+|+|+|+++++||+++|+|+||||||||+++|+|.. ++.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 477889887763 246999999999999999999999999999999999952 2212479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. ....+..++.++++++.+++.+..+..... .+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKLKE-SAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhhhC-Ccc
Confidence 87643 123567999999988877 699999987654331 112233445688999999986532211111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999985 4899999999987 57789999999985 79
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=326.91 Aligned_cols=204 Identities=24% Similarity=0.348 Sum_probs=168.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC-----CCCCCceeEEEEcCccCCCCC-----ccceEEEecCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-----DSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQH 234 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~-----~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1426)
+++|+|+|+++++||+++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999999 776 999999998875432 13579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 000556 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1426)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1426)
+.++ .+||+||+.++....+.... .+....++++++.+||.+..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKLK---------------------------------EELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCChHHhc
Confidence 8777 79999999886543211000 0012345678899999876655
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
.+. ++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+++|+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCE
Confidence 431 357999999999999999999999999999999999999999999999864 3 5566678888889999999
Q ss_pred EEEecCCeEEEecChhh
Q 000556 395 IILLSDGQIVYQGPREL 411 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~ 411 (1426)
|++|++|++++.|+.++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=328.24 Aligned_cols=220 Identities=24% Similarity=0.315 Sum_probs=177.3
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC---CceEEEEEEEc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT---GGYITGNITIS 903 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~---~~~~~G~i~i~ 903 (1426)
..+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+.+|+|.++
T Consensus 5 ~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 71 (253)
T PRK14242 5 PKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLD 71 (253)
T ss_pred cEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEEC
Confidence 3589999998873 2359999999999999999999999999999999999642 11357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
|.++.. ...++.++|++|++.+++ .||+||+.+....+. ....+...+.++++++.+++.+........ .+
T Consensus 72 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 147 (253)
T PRK14242 72 GENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRLHE-SA 147 (253)
T ss_pred CEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-Cc
Confidence 987642 123567999999988887 599999988654331 112233345688899999986432211111 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|++. ++.+.+|++++|++ |
T Consensus 148 ~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~-G 224 (253)
T PRK14242 148 LGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYM-G 224 (253)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999854 799999999986 57788999999986 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++..|+.
T Consensus 225 ~i~~~g~~ 232 (253)
T PRK14242 225 KLIEVGPT 232 (253)
T ss_pred EEEEeCCH
Confidence 88888864
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=297.84 Aligned_cols=200 Identities=26% Similarity=0.387 Sum_probs=177.5
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHH
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e 933 (1426)
..+|+|||+.|.+||.++++||||||||||||+++|..+ +..|+|.+||.+++...- .-|.|+|++.++|.+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 358999999999999999999999999999999999887 458999999998765432 2489999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q 000556 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1013 (1426)
Q Consensus 934 ~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~ 1013 (1426)
|+.|+.+++ .+++.+|.+.+.+.+..+||.+..++.+ -.||||||||+.|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 5678889999999999999999887764 58999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecC-cEEEEEcCC
Q 000556 1014 RAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG-GQEIYVGPL 1066 (1426)
Q Consensus 1014 ~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g-g~~v~~G~~ 1066 (1426)
-+++.++++|-++.+ +|+.++++||+.. |..-+.+++++|+.| |+++..=|.
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~ 219 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPL 219 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCC
Confidence 999999999999875 5999999999987 455677999999843 677766554
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=330.43 Aligned_cols=217 Identities=25% Similarity=0.337 Sum_probs=179.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|||+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 67888887763 3469999999999999999999999999999999999865 35799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
. ...++.++|++|+...++.+|+.|++.+....... .........+.++++++.+++.+..++.+ ..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHH
Confidence 2 22345689999998888889999999875311000 01111233456889999999988777763 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999999877999999999986 57889999999985 7888888
Q ss_pred CCC
Q 000556 1065 PLG 1067 (1426)
Q Consensus 1065 ~~~ 1067 (1426)
+.+
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 753
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.17 Aligned_cols=213 Identities=24% Similarity=0.358 Sum_probs=177.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.
T Consensus 2 l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 66 (271)
T PRK13638 2 LATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLD 66 (271)
T ss_pred eEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcc
Confidence 56788887763 2359999999999999999999999999999999999866 34899999998763
Q ss_pred c-----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 Q-----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
. ...++.++|++|++.. ....|+.||+.+....+ ....++..+.++++++.+++.+..++. +..||
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 138 (271)
T PRK13638 67 YSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLS 138 (271)
T ss_pred cccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCC
Confidence 1 1234678999999753 34568999998764332 123334445688999999998877765 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 139 gG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 216 (271)
T PRK13638 139 HGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILT 216 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999986 78998
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 217 ~g~~ 220 (271)
T PRK13638 217 HGAP 220 (271)
T ss_pred eCCH
Confidence 8874
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=342.62 Aligned_cols=209 Identities=25% Similarity=0.294 Sum_probs=176.4
Q ss_pred cccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCc----cCCCCCc-------cceEEE
Q 000556 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH----DMGEFVP-------ERTAAY 230 (1426)
Q Consensus 162 ~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~----~~~~~~~-------~~~~~y 230 (1426)
.....+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|. ++..... ++.++|
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~ 110 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSM 110 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEE
Confidence 34577999999999999999999999999999999999999998 999999996 3333221 246999
Q ss_pred ecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc
Q 000556 231 ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310 (1426)
Q Consensus 231 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 310 (1426)
|+|++.+++.+||+||+.|+....+... .+.+..++++++.+||++
T Consensus 111 vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~ 156 (382)
T TIGR03415 111 VFQKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQ 156 (382)
T ss_pred EECCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCch
Confidence 9999999999999999999865433210 011234677899999988
Q ss_pred cccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHh
Q 000556 311 CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390 (1426)
Q Consensus 311 ~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~ 390 (1426)
..|..+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.+|+.++|+.+++.+
T Consensus 157 ~~~~~~-----~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~ 230 (382)
T TIGR03415 157 WADKKP-----GELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALK 230 (382)
T ss_pred hhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHH
Confidence 777655 4699999999999999999999999999999999999999999999886533 4555558888999999
Q ss_pred hcCeEEEecCCeEEEecChhhHH
Q 000556 391 LFDDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 391 ~fD~vilL~~G~iv~~G~~~~~~ 413 (1426)
++|+|++|++|+++..|+++++.
T Consensus 231 l~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 231 IGNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred hCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.24 Aligned_cols=220 Identities=27% Similarity=0.353 Sum_probs=181.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 906 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 906 (1426)
-+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 478889887763 246999999999999999999999999999999999986543 236999999987
Q ss_pred CCc--------ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCcccccccc
Q 000556 907 KKQ--------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-----EVDSETRKMFIEEVMELVELKPLIQSLV 973 (1426)
Q Consensus 907 ~~~--------~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~-----~~~~~~~~~~v~~~l~~l~L~~~~~~~v 973 (1426)
... ...++.++|++|++.+++.+||.||+.+......+. ....+..+++++++++.+++.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 123456899999999899999999998753211000 1112334457899999999988777764
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEE
Q 000556 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELF 1052 (1426)
Q Consensus 974 g~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ 1052 (1426)
..||+|||||++|||+|+.+|++|+|||||+|||..++..+.+.|++++++ |+|||+++|++. ++.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 579999999999999999999999999999999999999999999999764 899999999986 4788999999
Q ss_pred EEecCcEEEEEcCCC
Q 000556 1053 LMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1053 ll~~gg~~v~~G~~~ 1067 (1426)
+|++ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7888888753
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=345.67 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=175.0
Q ss_pred ceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc---c----ccceEEEeccCCCC
Q 000556 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---T----FARISGYCEQNDIH 925 (1426)
Q Consensus 853 ~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~q~~~~ 925 (1426)
...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++... . .++.+||++|+..+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34689999999999999999999999999999999998763 479999999876431 1 13468999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEe
Q 000556 926 SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005 (1426)
Q Consensus 926 ~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLD 1005 (1426)
++.+||+||+.|....+. ...+..+++++++++.++|.+..++.+ ..||||||||++|||||+.+|++||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765431 233445567899999999998887764 579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1006 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|||+|||+.++..+++.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 4899999999986 57889999999985 789988875
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=337.13 Aligned_cols=205 Identities=27% Similarity=0.383 Sum_probs=176.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999988 999999998875422 2357999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.+++.+... .+....++.+++.+||++..++.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999998765433110 0112245778999999988876654
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||+||+++|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~--~~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG--KD-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc--CC-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999874 24 556667888899999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=330.97 Aligned_cols=217 Identities=29% Similarity=0.374 Sum_probs=180.4
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 488999988763 2469999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ..+++.++|++|+..+++.+|+.||+.+....... ........++.++++++.+++.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 32 23456789999998888889999999875321110 00111223456889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57789999999985 78888
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 229 ~~~~ 232 (265)
T PRK10575 229 QGTP 232 (265)
T ss_pred ecCH
Confidence 8875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=323.66 Aligned_cols=212 Identities=26% Similarity=0.389 Sum_probs=180.1
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.+. .+.+++|+|++++|||+++|+|+||||||||+++|+|..++ ..|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~ 66 (232)
T cd03300 2 ELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITN 66 (232)
T ss_pred EEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCc
Confidence 5778877763 24699999999999999999999999999999999998763 47999999987653
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
. ..++.++|++|++..++.+|+.||+.+....+. ......++.++++++.+++.+..++.+ ..||+|||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (232)
T cd03300 67 LPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQR 138 (232)
T ss_pred CChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 2 124578999999998888999999987654331 223334556889999999998877763 5899999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999999999999999999999765 899999999986 57889999999986 788888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=328.97 Aligned_cols=218 Identities=21% Similarity=0.267 Sum_probs=179.1
Q ss_pred CCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--C-ceEEEEEE
Q 000556 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNIT 901 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~ 901 (1426)
.+..+.++|+++.++ +..+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 345689999998873 2359999999999999999999999999999999999753 1 13579999
Q ss_pred EcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000556 902 ISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSL 972 (1426)
Q Consensus 902 i~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 972 (1426)
++|.+... ...++.++|++|++.+++ .|++||+.+....+. ..+.+..+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987632 134567999999988877 899999987653321 1233444566889999999853 23333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEE
Q 000556 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF 1052 (1426)
Q Consensus 973 vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ 1052 (1426)
...||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++. ++.|||+++|++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999996 4789999999986 5778899999
Q ss_pred EEecCcEEEEEcCC
Q 000556 1053 LMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1053 ll~~gg~~v~~G~~ 1066 (1426)
+|++ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 789988874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=323.70 Aligned_cols=203 Identities=29% Similarity=0.420 Sum_probs=170.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999987 999999998875321 2356999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+..+..+... .+....++++++.+||++..++.+ .
T Consensus 92 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------------------------------SEIKEEVELLLRVLGLTDKANKRA-----R 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhChh-----h
Confidence 9999988654332100 001123567888999987777655 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++++ + .+|+.++|+.+++.+.+|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 555667788888889999999999999
Q ss_pred EEEecChhhH
Q 000556 403 IVYQGPRELV 412 (1426)
Q Consensus 403 iv~~G~~~~~ 412 (1426)
+++.|+.+++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999988764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=328.65 Aligned_cols=225 Identities=22% Similarity=0.265 Sum_probs=182.4
Q ss_pred ccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEE
Q 000556 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITG 898 (1426)
Q Consensus 822 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G 898 (1426)
+|..+..+.++|+++.++ .+.+|+|||+++++||++||+|+||||||||+++|+|...+ .+.+|
T Consensus 14 ~~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G 80 (267)
T PRK14237 14 FPEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG 80 (267)
T ss_pred cCCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce
Confidence 344455799999998873 24699999999999999999999999999999999997642 13589
Q ss_pred EEEEcCccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc
Q 000556 899 NITISGYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973 (1426)
Q Consensus 899 ~i~i~g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v 973 (1426)
+|.++|.+... ...++.++|++|++.+++ .||+||+.+..... .....+..++.++++++.++|.+..+...
T Consensus 81 ~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~ 157 (267)
T PRK14237 81 QILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL 157 (267)
T ss_pred EEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 99999987642 123567899999988877 69999998864322 11223344566889999999864322222
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEE
Q 000556 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1426)
Q Consensus 974 g~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~l 1053 (1426)
.. .+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||+++|+++ ++.+.+|++++
T Consensus 158 ~~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~ 234 (267)
T PRK14237 158 HK-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAF 234 (267)
T ss_pred cC-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEE
Confidence 22 246899999999999999999999999999999999999999999999985 4799999999987 57889999999
Q ss_pred EecCcEEEEEcCC
Q 000556 1054 MKRGGQEIYVGPL 1066 (1426)
Q Consensus 1054 l~~gg~~v~~G~~ 1066 (1426)
|++ |+++..|+.
T Consensus 235 l~~-G~i~~~g~~ 246 (267)
T PRK14237 235 FYL-GDLIEYDKT 246 (267)
T ss_pred EEC-CEEEEeCCH
Confidence 985 799999885
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=331.42 Aligned_cols=218 Identities=23% Similarity=0.294 Sum_probs=181.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++
T Consensus 7 ~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 71 (265)
T PRK10253 7 RLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHI 71 (265)
T ss_pred EEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEEh
Confidence 588999998874 24699999999999999999999999999999999998663 479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ...++.++|++|++..++..|++|++.+......+. ....+..++.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 146 (265)
T PRK10253 72 QHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLSG 146 (265)
T ss_pred hhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCCh
Confidence 43 223456899999998888899999997642111000 001123345688999999998877776 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |++++
T Consensus 147 Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~ 224 (265)
T PRK10253 147 GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVA 224 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 58899999999985 78999
Q ss_pred EcCCC
Q 000556 1063 VGPLG 1067 (1426)
Q Consensus 1063 ~G~~~ 1067 (1426)
.|+..
T Consensus 225 ~g~~~ 229 (265)
T PRK10253 225 QGAPK 229 (265)
T ss_pred eCCHH
Confidence 88853
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=323.78 Aligned_cols=203 Identities=24% Similarity=0.395 Sum_probs=167.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999988765432 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vG~~ 319 (1426)
+||+||+.+.....+ .. +....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~~----------------------------------~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--RA----------------------------------KRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--ch----------------------------------hHHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999988653221 00 0011234456666 4665555444
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-E-GVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999998864 3 4455557788888999999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=343.68 Aligned_cols=206 Identities=29% Similarity=0.457 Sum_probs=166.2
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1426)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||.+..+..+ +++++||+|++.+++ .|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999987 9999999999887764 588999999986665 59
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
+||||.++.... +. + +++ +++.. ..+.+.+.-++..||.+|+.+ +
T Consensus 411 ireNi~l~~~~~---s~-e---~i~------------------~al~~---------a~l~~~v~~p~GLdt~ige~G-~ 455 (559)
T COG4988 411 IRENILLARPDA---SD-E---EII------------------AALDQ---------AGLLEFVPKPDGLDTVIGEGG-A 455 (559)
T ss_pred HHHHhhccCCcC---CH-H---HHH------------------HHHHH---------hcHHHhhcCCCcccchhccCC-C
Confidence 999999874311 00 0 000 00000 011222223557789999765 5
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
+|||||+|||++|||++++++++++||||++||.+|...|.+.|.++++ ++|+++ ++|. .+...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~-itHr-l~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLV-ITHR-LEDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEE-EEcC-hHHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999874 456555 5554 34566789999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999998854
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=326.85 Aligned_cols=214 Identities=29% Similarity=0.386 Sum_probs=172.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1426)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999887 999999998876543 135699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.++..... .. .... .+.. ..+....++.+++.+||.+..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~---~~~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--ST---WRSL------FGLF---------------PKEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hh---hhhh------cccC---------------cHHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987642110 00 0000 0000 0011234567889999987666544
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++++..+ ++|+.++|+.+++.+++|+|++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEG-ITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999865334 45555788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=329.96 Aligned_cols=223 Identities=23% Similarity=0.295 Sum_probs=179.5
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++.....+ ..+++.+|+|+|+++++||++||+|+||||||||+++|+|... +.+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 67888888774210000 0113569999999999999999999999999999999999866 35899999998764
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000556 909 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 979 (1426)
.. ..++.++|++|++ .+.+.+||+|++.+...... .......++.++++++.+++. +..+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 31 1345799999996 46678999999976543211 122333455688999999996 556665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|++ |
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-G 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-C
Confidence 79999999999999999999999999999999999999999999999765 899999999986 57778999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99998875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=323.70 Aligned_cols=195 Identities=26% Similarity=0.381 Sum_probs=163.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999999987 999999998875432 135799999999899
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.++.+..+... .+....++.+++.+||++..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 136 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALP-- 136 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 99999999998754322100 001224567889999987776554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ . +++|+.++|+.+++.+++|+|++|
T Consensus 137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-R-GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998854 3 445566788888898999999999
Q ss_pred cCCeE
Q 000556 399 SDGQI 403 (1426)
Q Consensus 399 ~~G~i 403 (1426)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99974
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=322.06 Aligned_cols=213 Identities=24% Similarity=0.366 Sum_probs=176.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++... ....+|+|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 478999988774210 013599999999999999999999999999999999998653 489999999876
Q ss_pred Cccc------c-cceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000556 908 KQET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1426)
Q Consensus 908 ~~~~------~-~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 980 (1426)
.... . ++.++|++|++.+++.+|+.||+.+....+ ........++++++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 4321 1 246899999998889999999998765432 1223344567899999999988777664 57
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+ +.+|++++|++ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999764 899999999986 34 56999999986 67
Q ss_pred EEE
Q 000556 1060 EIY 1062 (1426)
Q Consensus 1060 ~v~ 1062 (1426)
++.
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=333.03 Aligned_cols=217 Identities=23% Similarity=0.334 Sum_probs=177.0
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 67889988774210 0013599999999999999999999999999999999998653 5899999998754
Q ss_pred c-------ccccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000556 909 Q-------ETFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGV 978 (1426)
Q Consensus 909 ~-------~~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 978 (1426)
. ...++.++|++|++ .+++ .||+||+.+..... ....+..++.++++++.++|.+ ..+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 12456789999996 3444 69999998764332 1233344556889999999973 45554 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++..|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 88888875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=336.43 Aligned_cols=214 Identities=22% Similarity=0.244 Sum_probs=176.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCC--
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHD-- 235 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d-- 235 (1426)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... .+.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742348999999998865432 13699999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccc
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 315 (1426)
.+.+.+|+.+++.+.....+... ..+....+.++++.+||++..+.
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------------------------------~~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------------------------------KAEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHcCCCChHHH-
Confidence 68899999999987543221000 00112345677899999764332
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
+ +..+++|||||||||+||+||+.+|+++++||||+|||..++.++.+.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE-FNTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEECCHHHHHHhCCEE
Confidence 2 3567789999999999999999999999999999999999999999999998653 3566666889999999999999
Q ss_pred EEecCCeEEEecChhhHHH
Q 000556 396 ILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1426)
++|++|+|++.|+.+++..
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=321.26 Aligned_cols=198 Identities=31% Similarity=0.442 Sum_probs=166.2
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCCH
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 243 (1426)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999987 999999998875421 23579999999988998999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.+.....+... .+....++++++.+||++..+..+ +.
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRV-----GG 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhh-----hh
Confidence 999987543321100 011234567899999987776554 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +.+|+.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-L-GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998854 3 44555577888889999999999999999
Q ss_pred EEec
Q 000556 404 VYQG 407 (1426)
Q Consensus 404 v~~G 407 (1426)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.56 Aligned_cols=198 Identities=26% Similarity=0.394 Sum_probs=166.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 45999999999999999999999999999999999999887 9999999987653 2346799999999889999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
||+.+.....+... .+....++++++.+||++..++.+ +.|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRV-----EEL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcH-----hhC
Confidence 99988654322100 001224567889999987776554 469
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv 404 (1426)
||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ . +.+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~-~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-A-GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998764 3 445566788888899999999999999998
Q ss_pred Eec
Q 000556 405 YQG 407 (1426)
Q Consensus 405 ~~G 407 (1426)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=318.76 Aligned_cols=223 Identities=25% Similarity=0.343 Sum_probs=194.4
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1426)
...-++|+|+.|+.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++..++. ++.++.|+|+-.
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999998 9999999998876653 367999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
++|..||.||..|+.+.+|++.. +.+.++.+.|+..||+..++.++
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999999886431 23345678899999999888654
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
++||||+||||.|||||+.+|+||+||||+|+|||--+.++.+.|.++-+..++ +|+.++|+.+|.+.+-|+|.
T Consensus 163 -----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~K-TIvFitHDLdEAlriG~rIa 236 (386)
T COG4175 163 -----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKK-TIVFITHDLDEALRIGDRIA 236 (386)
T ss_pred -----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCC-eEEEEecCHHHHHhccceEE
Confidence 579999999999999999999999999999999999999999988777665544 45568999999999999999
Q ss_pred EecCCeEEEecChhhHHHHHHhcCCCCCCCCChhHHHHhhc
Q 000556 397 LLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEVT 437 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~~F~~~Gf~cp~~~~~adfl~~v~ 437 (1426)
+|++|+||..|+++|++. .|...-+++|..++.
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v~ 269 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNVD 269 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcCC
Confidence 999999999999999974 466666677776543
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=314.27 Aligned_cols=190 Identities=57% Similarity=0.936 Sum_probs=161.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++... .++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 478899988874210 12469999999999999999999999999999999999643224589999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
. ...++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 334567899999998889999999998642110 49999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999987799999999998744678899999998647888865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=368.98 Aligned_cols=207 Identities=25% Similarity=0.389 Sum_probs=166.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
.++|+|+|++|+||+.++|+||||||||||+++|+|.+ |. +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 35899999999999999999999999999999999999 76 8999999999887754 468999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|++|||.++.. +.+.++..+++...+ .++.+ -.|++..||.||+.+.
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~------l~~~i--~~lp~G~dT~vge~G~ 484 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAW------VSEFL--PLLPQGLDTPIGDQAA 484 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHH--HhcccccccccccCCC
Confidence 99999998632 011111111111100 11222 2466778999998754
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
.||||||||++||||++++|++|+||||||+||+.++..|.+.|+++. .++|+|+. +|.. ++.+.+|+|++|++|
T Consensus 485 -~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiI-tHrl-~~i~~aD~Iivl~~G 559 (588)
T PRK11174 485 -GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMV-THQL-EDLAQWDQIWVMQDG 559 (588)
T ss_pred -CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEE-ecCh-HHHHhCCEEEEEeCC
Confidence 699999999999999999999999999999999999999999998864 35666664 4443 566789999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
++++.|+++++.+
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999864
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=329.15 Aligned_cols=217 Identities=27% Similarity=0.386 Sum_probs=179.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcc
Confidence 56778887763 3469999999999999999999999999999999999865 34799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
. ...++.++|++|++..++.+||.||+.+....... .........++++++++.+++.+..++.+ ..||||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGG 141 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHH
Confidence 3 12345689999998777889999999874211000 00111233456889999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 219 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAG 219 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEec
Confidence 999999999999999999999999999999999999999999877899999999997 57789999999985 7888888
Q ss_pred CCC
Q 000556 1065 PLG 1067 (1426)
Q Consensus 1065 ~~~ 1067 (1426)
+.+
T Consensus 220 ~~~ 222 (256)
T TIGR03873 220 PPR 222 (256)
T ss_pred CHH
Confidence 753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=324.19 Aligned_cols=211 Identities=25% Similarity=0.322 Sum_probs=174.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECC
Confidence 35677877663 2469999999999999999999999999999999999866 34799999998754
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCH
Q 000556 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE-LKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ..++.++|++|++.+++.+|+.|++.+....+. .. ..+.++++++.++ +.+..++. +..|||
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~ 134 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSG 134 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCH
Confidence 32 124568999999999999999999987654321 11 1233567788776 55555555 457999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~ 212 (230)
T TIGR03410 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVA 212 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998874 899999999986 57778999999985 78999
Q ss_pred EcCCC
Q 000556 1063 VGPLG 1067 (1426)
Q Consensus 1063 ~G~~~ 1067 (1426)
.|+..
T Consensus 213 ~~~~~ 217 (230)
T TIGR03410 213 SGAGD 217 (230)
T ss_pred ECCHH
Confidence 88753
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=325.77 Aligned_cols=206 Identities=26% Similarity=0.397 Sum_probs=171.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
..+|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 45999999999999999999999999999999999999987 9999999988764332 35689999999999999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc--cccccccCc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV--CADTMVGDE 319 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vG~~ 319 (1426)
||+||+.++.+..+... .+....+.++++.+||++ ..++
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~----- 131 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADR----- 131 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhc-----
Confidence 99999988654322100 001223567889999985 4444
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|+
T Consensus 132 ~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 132 YPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999986532 4455557777788899999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999987763
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=346.01 Aligned_cols=213 Identities=26% Similarity=0.434 Sum_probs=181.0
Q ss_pred CCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcC
Q 000556 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 904 (1426)
.+..+..+|++|.++. .+++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 3456777799998852 23799999999999999999999999999999999998874 589999999
Q ss_pred ccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccc------cccC
Q 000556 905 YPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS------LVGL 975 (1426)
Q Consensus 905 ~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~------~vg~ 975 (1426)
.+..+ ..+++.++||+|++.+++ -|++||+.++. + +.+ ++.+.++++..+|.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 87544 568899999999999886 59999998742 1 122 3447889999998876654 4443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+.++|||||+|||++||||+++++++++||||++||.++++.|++.|.++++ ++|||++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4579999999999999999999999999999999999999999999999986 599999999974 567789999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 799988874
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=330.87 Aligned_cols=214 Identities=28% Similarity=0.349 Sum_probs=178.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. +++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 56888888763 12359999999999999999999999999999999999865 34799999998763
Q ss_pred c-----ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 Q-----ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~-----~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
. ...++.++|++|++. .+...||.|++.+..... ....++..+.+.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 123567999999963 233479999998754321 1233444566889999999998887764 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999986 57788999999986 78998
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=334.13 Aligned_cols=205 Identities=23% Similarity=0.351 Sum_probs=169.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC----------------------
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF---------------------- 222 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~---------------------- 222 (1426)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999988 89999998754210
Q ss_pred -----CccceEEEecCCC-CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhh
Q 000556 223 -----VPERTAAYISQHD-NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEAN 296 (1426)
Q Consensus 223 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~ 296 (1426)
..++.++||+|++ ..+...||+|||.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1135799999985 34556799999998754332110 0112
Q ss_pred HHHHHHHHHhCCc-ccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCC
Q 000556 297 VITDYYLKVLGLE-VCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375 (1426)
Q Consensus 297 ~~~~~~l~~lgL~-~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~ 375 (1426)
.+++.+++.+||+ +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.. . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 3467789999996 455544 457999999999999999999999999999999999999999999999863 3 4
Q ss_pred eEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHH
Q 000556 376 TAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 376 t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1426)
++|+.++|+.+++.+.+|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 55666888889999999999999999999999998864
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=316.01 Aligned_cols=180 Identities=46% Similarity=0.787 Sum_probs=155.9
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCCC--ccceEEEecCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNH 237 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~ 237 (1426)
.++.+|+|+|+.+++|++++|+||||||||||+++|+|.++ |+ +|+|.++|+++.... .++.++|++|++.+
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~---~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~ 94 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSV---EGDIHYNGIPYKEFAEKYPGEIIYVSEEDVH 94 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCc---ceEEEECCEECccchhhhcceEEEEeccccc
Confidence 34679999999999999999999999999999999999998 55 999999999876532 24579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.++.+.. .
T Consensus 95 ~~~~tv~~~l~~~~~~~--------------------------------------------------------------~ 112 (202)
T cd03233 95 FPTLTVRETLDFALRCK--------------------------------------------------------------G 112 (202)
T ss_pred CCCCcHHHHHhhhhhhc--------------------------------------------------------------c
Confidence 99999999998753210 1
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..+..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.++|++.||+.+++.+.+|++++
T Consensus 113 ~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~ 192 (202)
T cd03233 113 NEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLV 192 (202)
T ss_pred ccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEE
Confidence 12334799999999999999999999999999999999999999999999986543567777778888899999999999
Q ss_pred ecCCeEEEec
Q 000556 398 LSDGQIVYQG 407 (1426)
Q Consensus 398 L~~G~iv~~G 407 (1426)
|++|++++.|
T Consensus 193 l~~G~i~~~g 202 (202)
T cd03233 193 LYEGRQIYYG 202 (202)
T ss_pred EECCEEEecC
Confidence 9999998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=320.03 Aligned_cols=215 Identities=26% Similarity=0.332 Sum_probs=180.8
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-C-CCCceeEEEEcCccCCCCCc-------cceEEEecCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-S-SLKVSGRVTYNGHDMGEFVP-------ERTAAYISQH 234 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~-~-~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~ 234 (1426)
..++++||||.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 33468999999998755543 2479999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc
Q 000556 235 D--NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1426)
Q Consensus 235 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1426)
+ .+.|.+||.+.+.-..+.+.... ...+...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 6 67899999988876544321000 0112345677889999998643
Q ss_pred cccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhc
Q 000556 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1426)
Q Consensus 313 dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~f 392 (1426)
. +-+.++.+|||||||||.||.||+.+|++||.||||++||..++.+|++.|+++.+ ..++.++.++|+..-+.+++
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 2 33567889999999999999999999999999999999999999999999999987 56778888999999999999
Q ss_pred CeEEEecCCeEEEecChhhHH
Q 000556 393 DDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1426)
|+|+||+.|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=331.54 Aligned_cols=216 Identities=22% Similarity=0.337 Sum_probs=174.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCC-CCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHD-NHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 240 (1426)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35899999999999999999999999999999999999988 9999999998864332 35799999986 36778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.|+.+..+... .+....++.+++.+||++..+..+
T Consensus 97 ~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13650 97 ATVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP---- 138 (279)
T ss_pred ccHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 899999998754322110 011234577899999987766554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++ ..+|+|++|++
T Consensus 139 -~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tilivtH~~~~~-~~~dri~~l~~ 215 (279)
T PRK13650 139 -ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQ-MTVISITHDLDEV-ALSDRVLVMKN 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEecCHHHH-HhCCEEEEEEC
Confidence 47999999999999999999999999999999999999999999999865334 4455567777777 58999999999
Q ss_pred CeEEEecChhhHHH---HHHhcCCCCC
Q 000556 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1426)
Q Consensus 401 G~iv~~G~~~~~~~---~F~~~Gf~cp 424 (1426)
|+++..|+++++.+ .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999987653 2334455433
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.45 Aligned_cols=198 Identities=24% Similarity=0.370 Sum_probs=167.4
Q ss_pred eeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000556 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936 (1426)
Q Consensus 857 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 936 (1426)
|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+...... ..+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 358999999987653221 2489999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000556 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016 (1426)
Q Consensus 937 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~ 1016 (1426)
+......+ ....+..++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2233444556889999999988777764 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1017 AIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1017 ~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57888999999986 788877753
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=318.96 Aligned_cols=198 Identities=22% Similarity=0.305 Sum_probs=167.7
Q ss_pred EeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc-ccccceEEEeccCCCCCCCCCHHHH
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-ETFARISGYCEQNDIHSPFVTVYES 934 (1426)
Q Consensus 856 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~q~~~~~~~lTv~e~ 934 (1426)
+++|+|+++++||+++|+||||||||||+++|+|..++ .+|+|.++|.++.. ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 45799999999999999999999999999999998763 48999999987643 2345679999999999889999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 000556 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1426)
Q Consensus 935 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~ 1014 (1426)
+.+...... ... ...++.++++++.+++.+..++.+ ..||+|||||++||++|+.+|++|+|||||+|||..
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 986532211 111 223456788999999988777763 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcC
Q 000556 1015 AAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 1015 ~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~ 1065 (1426)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|++ |+++..|+
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999986 56788999999985 78888764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=328.03 Aligned_cols=220 Identities=23% Similarity=0.269 Sum_probs=177.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 904 (1426)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 589999998873 24699999999999999999999999999999999997642 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ..+++.++|++|++..++. ||.||+.+....+.. ........+.++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87642 1245678999999888774 999999886543311 11223334568899999999642211111 1146
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 789999999986 57788999999985 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9988874
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=331.45 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=169.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCC-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1426)
+.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35899999999999999999999999999999999999998 999999999875421 2457999999852
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1426)
.+...||+||+.|+....+... .+....++++++.+||. +..++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMNL----------------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334699999998653221100 01123456789999996 555544
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... .+++|+.++|+.+++.+++|+|
T Consensus 143 -----~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 -----PFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred -----cccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4579999999999999999999999999999999999999999999998653 3456666888888999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=322.94 Aligned_cols=212 Identities=25% Similarity=0.372 Sum_probs=179.9
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++ .+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +..|+|.++|.++..
T Consensus 2 ~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~ 66 (237)
T TIGR00968 2 EIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATR 66 (237)
T ss_pred EEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCc
Confidence 5677777663 2469999999999999999999999999999999999865 347999999987654
Q ss_pred c-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 910 E-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 910 ~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
. ..++.++|++|++..++..|+.||+.+....+. .......+.++++++.+++.+..++.+ ..||+||+||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr 138 (237)
T TIGR00968 67 VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQR 138 (237)
T ss_pred CChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHH
Confidence 2 234578999999998889999999987654331 223334456789999999988777764 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999999999999998775 899999999986 57788999999985 789998885
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=330.01 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=169.9
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1426)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5899999999999999999999999999999999999987 9999999998765432 356999999863 45678
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+||+.|+....+... .+....++.+++.+||.+..++.+
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 136 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPP----- 136 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCh-----
Confidence 99999998643221100 011234577899999987777655
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
..|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|++++. . +.+|+.++|+.+++.+.+|+|++|++|
T Consensus 137 ~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 137 YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-Q-GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999864 3 455566788888899999999999999
Q ss_pred eEEEecChhhH
Q 000556 402 QIVYQGPRELV 412 (1426)
Q Consensus 402 ~iv~~G~~~~~ 412 (1426)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=322.41 Aligned_cols=195 Identities=27% Similarity=0.383 Sum_probs=161.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999987 9999999998765431 3569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 138 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------------------------------KERRERAEELLERVGLGDRLNHYP- 138 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhcCh-
Confidence 999999999998754332100 001124567889999987666554
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++. .+|+|++
T Consensus 139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAG-TTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CeEEEEECCHHHHh-hhcEEEE
Confidence 46999999999999999999999999999999999999999999999865334 44555677777775 9999999
Q ss_pred ecCCeE
Q 000556 398 LSDGQI 403 (1426)
Q Consensus 398 L~~G~i 403 (1426)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=323.89 Aligned_cols=220 Identities=20% Similarity=0.283 Sum_probs=178.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1426)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 478899988773 2359999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ...++.++|++|+..+++..|++||+.+...... ..+..+.+++++++++.+++.+........ .+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKS-NAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhC-CcC
Confidence 87632 2346679999999999999999999987543321 122233345688999999986422111111 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999975 689999999986 57789999999985 79
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=334.72 Aligned_cols=220 Identities=18% Similarity=0.244 Sum_probs=180.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC-c-eEEEEEEEcCcc
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-G-YITGNITISGYP 906 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~~ 906 (1426)
++++|+++.+.... +...+|+||||+|++||++||+|+||||||||+++|+|...+ + ..+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDES---------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCCC---------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 68899988774311 124699999999999999999999999999999999997642 2 358999999988
Q ss_pred CCcc---c----ccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---cccccc
Q 000556 907 KKQE---T----FARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL---IQSLVG 974 (1426)
Q Consensus 907 ~~~~---~----~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~vg 974 (1426)
+... . .++.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.+||.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 6432 1 123689999998 46788999988866543321 22345556778999999999753 3333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEE
Q 000556 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFL 1053 (1426)
Q Consensus 975 ~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~l 1053 (1426)
+..|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.+ .|.|+|++||+++ .+.+.+|+|++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999999999976 4999999999986 46788999999
Q ss_pred EecCcEEEEEcCC
Q 000556 1054 MKRGGQEIYVGPL 1066 (1426)
Q Consensus 1054 l~~gg~~v~~G~~ 1066 (1426)
|.+ |+++..|+.
T Consensus 227 m~~-G~ive~g~~ 238 (326)
T PRK11022 227 MYA-GQVVETGKA 238 (326)
T ss_pred EEC-CEEEEECCH
Confidence 985 899999985
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=340.64 Aligned_cols=203 Identities=21% Similarity=0.310 Sum_probs=175.9
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCc----cCCc---cc---c-cceEEEec
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY----PKKQ---ET---F-ARISGYCE 920 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~----~~~~---~~---~-~~~~gyv~ 920 (1426)
+...+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|. ++.. .. . ++.++||+
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 45679999999999999999999999999999999999876 34799999995 2221 11 1 24699999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000556 921 QNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPS 1000 (1426)
Q Consensus 921 q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~ 1000 (1426)
|+..++|.+||+||+.|....+ ..+.+++.++++++++.+||.+..+..+ ..||||||||++|||+|+.+|+
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999875443 2344556677899999999998888764 4799999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1001 IIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1001 iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|++ |+++..|+.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~ 249 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTP 249 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999999999999765 999999999986 57899999999985 799999985
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=329.73 Aligned_cols=215 Identities=23% Similarity=0.319 Sum_probs=180.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++. +++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 4889999887631 124599999999999999999999999999999999998663 479999999886
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ..+++.++|++|++. .++.+||+||+.+..... ....++..+.++++++.++|.+..++.+ +.|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 43 234567999999974 566789999998764322 1233444556899999999998877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|++. ++ ..+|++++|++ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999766 599999999986 34 57999999985 78888
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=344.33 Aligned_cols=209 Identities=26% Similarity=0.413 Sum_probs=175.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+++|+|+|+.|++||+++|+||||||||||||+|+|.++|. +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999987 9999999998865432 36799999999888999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+||+.++..-.. .+. ... ..+...+++++++.+||.+..++.+
T Consensus 93 tv~e~v~~~~~~~~--~~~----------------~~~------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR--SRF----------------DTW------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc--ccc----------------cCC------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999998642110 000 000 0012245678899999988777654
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.|||||||||.|||||+++|++|+|||||+|||+.+..++.+.|+++++ .+ ++|+.++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g-~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DG-KTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cC-CEEEEEECCHHHHHHhCCEEEEEECC
Confidence 47999999999999999999999999999999999999999999999875 34 45565788899999999999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998864
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=334.86 Aligned_cols=225 Identities=23% Similarity=0.255 Sum_probs=183.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-++.+|+++.+....... ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLF---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCcc---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 478999998875321100 001135699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000556 908 KQE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGV 978 (1426)
Q Consensus 908 ~~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~ 978 (1426)
... .+++.++||+|++ .+.|.+|+.+++....... ......+.++++.++++.+||.+ ..++. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 432 2456799999997 5788999999987654432 12344455677899999999964 45554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
..||||||||++||+||+.+|++|++||||+|||..++..|+++|+++.++ |.|||++||+.+ .+.+.+|++++|.+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~- 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL- 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-
Confidence 689999999999999999999999999999999999999999999999765 999999999986 46678999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 231 G~ive~g~~ 239 (327)
T PRK11308 231 GRCVEKGTK 239 (327)
T ss_pred CEEEEECCH
Confidence 799999985
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=320.83 Aligned_cols=204 Identities=34% Similarity=0.537 Sum_probs=164.6
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC---CCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD---SSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~---~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 240 (1426)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 66 99999999887543345679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHH-HHHHhCCcccccccccCc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDY-YLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vG~~ 319 (1426)
+||+||+.|+.......... .. ......+. .++.+++++..++.
T Consensus 96 ~tv~enl~~~~~~~~~~~~~---~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~---- 140 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSS---DA----------------------------IRKKRVEDVLLRDLALTRIGGNL---- 140 (226)
T ss_pred CcHHHHHHHHHHhhcccccc---hH----------------------------HHHHHHHHHHHHhhcchhhhccc----
Confidence 99999999875432110000 00 00112233 78888887665544
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++..++.+++|+|++|+
T Consensus 141 -~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 141 -VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred -ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999998764 355666644444468999999999999
Q ss_pred CCeEEEec
Q 000556 400 DGQIVYQG 407 (1426)
Q Consensus 400 ~G~iv~~G 407 (1426)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=326.92 Aligned_cols=213 Identities=27% Similarity=0.358 Sum_probs=171.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1426)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 45999999999999999999999999999999999999887 999999998875432 135699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.++..... ... .... +. ...+....++++++.+||.+..+..
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~---~~~~------~~---------------~~~~~~~~~~~~l~~~~l~~~~~~~--- 142 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTW---RSLL------GR---------------FSEEDKERALSALERVGLADKAYQR--- 142 (243)
T ss_pred ccccHHHHHhhcccccc--cch---hhhh------cc---------------ccHHHHHHHHHHHHHcCcHhhhcCC---
Confidence 99999999987532110 000 0000 00 0001123456788999998766654
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
++.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+.. +++|+.++|+.+++.+++|+|++|
T Consensus 143 --~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 143 --ADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKED-GITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEE
Confidence 45799999999999999999999999999999999999999999999886533 445555778888888999999999
Q ss_pred cCCeEEEecChhhH
Q 000556 399 SDGQIVYQGPRELV 412 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1426)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=359.34 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=185.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-++++|+++.+. ++.+|+||||++++||+++|+||||||||||+++|+|...+++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 378899988773 2469999999999999999999999999999999999865433589999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.... .++.+||++|++.+++.+||+|++.+....+.....+.+...+.++++++.+++.+..++.+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 4321 24568999999988899999999988653321111223334456899999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||++||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.+|++++|++ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 789999
Q ss_pred cCCCc
Q 000556 1064 GPLGR 1068 (1426)
Q Consensus 1064 G~~~~ 1068 (1426)
|+..+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 88753
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=324.19 Aligned_cols=219 Identities=21% Similarity=0.271 Sum_probs=176.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG-GYITGNITISGYPK 907 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~ 907 (1426)
+.++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.++
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 56788887763 24699999999999999999999999999999999997532 24589999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
.. ...++.++|++|++.+++ .|++||+.+....+.. .......+++++++++.++|.+....... .....||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G 146 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGM-IKNKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGG 146 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCc-ccChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHH
Confidence 43 234567899999988887 6999999886543311 01122334567899999999543211111 124689999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 223 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFG 223 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999864 899999999986 57789999999985 7999988
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 224 ~~ 225 (246)
T PRK14269 224 ES 225 (246)
T ss_pred CH
Confidence 74
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=317.72 Aligned_cols=189 Identities=23% Similarity=0.372 Sum_probs=162.2
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCC
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHS 926 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~ 926 (1426)
+.+|+|+||++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999876 358999999987431 12356799999999988
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000556 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1426)
Q Consensus 927 ~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDE 1006 (1426)
+..|++||+.+....+ ........+.++++++.+++.+..++.+ ..||+|||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 8999999998865432 2233444567889999999988777764 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEE
Q 000556 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 1007 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll 1054 (1426)
||+|||+.+...+.+.|+++.++|.|||+++|++. +.+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999999877999999999985 45789999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=336.01 Aligned_cols=208 Identities=22% Similarity=0.247 Sum_probs=174.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--C
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--N 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1426)
..+|+|||++|++||+++|+|+||||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 56999999999999999999999999999999999999987 9999999998865432 35799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1426)
+++.+||.||+.+..+....+.. ..+....++++++.+||. +..+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~--------------------------------~~~~~~~~~~~l~~vgl~~~~~~-- 156 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLS--------------------------------RQEVKDRVKAMMLKVGLLPNLIN-- 156 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCC--------------------------------HHHHHHHHHHHHHHcCCChHHhc--
Confidence 78899999999986542210000 001223456789999995 3444
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
..+..|||||||||+||+||+.+|+++++||||+|||..++.++++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 157 ---~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 157 ---RYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQRE-MGLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred ---CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 445679999999999999999999999999999999999999999999998653 3456666899999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.16 Aligned_cols=195 Identities=26% Similarity=0.373 Sum_probs=164.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-CccceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-VPERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 243 (1426)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999887 99999999876532 123568999999988989999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.+.....+. .+..++.+++.+||++..++.+ +.
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKV-----KG 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence 9999886432110 0123466788999987776554 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.+ .+.| ++.++|+.+++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-ii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGIT-VLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998764 3444 55577888889899999999999999
Q ss_pred EEec
Q 000556 404 VYQG 407 (1426)
Q Consensus 404 v~~G 407 (1426)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=322.56 Aligned_cols=201 Identities=29% Similarity=0.416 Sum_probs=169.3
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc--ccccceEEEec-cCCCCCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ--ETFARISGYCE-QNDIHSPF 928 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-q~~~~~~~ 928 (1426)
+.+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP--TSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 446799999999999999999999999999999999998653 48999999986432 23456789997 55667788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000556 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1426)
Q Consensus 929 lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPT 1008 (1426)
+|++|++.+....+ ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998765443 1223344556788999999998887764 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 1009 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 57788999999985 6777654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.30 Aligned_cols=215 Identities=23% Similarity=0.288 Sum_probs=180.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4889999987741 11358999999999999999999999999999999999866 3489999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ...++.++|++|++. .++..|+.+++.+..... ....+...+.++++++.+++.+..+.. +..||+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 43 234567899999974 677789999998864322 123344455688999999998877765 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|++. ++. .+|++++|++ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998765 899999999987 455 4999999985 79999
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 223 ~g~~ 226 (269)
T PRK13648 223 EGTP 226 (269)
T ss_pred ecCH
Confidence 9875
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=321.80 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=169.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc--cceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 242 (1426)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++..++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999987 9999999988754322 246999999988888999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999987543321100 0011235677889999877776554
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++++..+.| ++.++|..+++. .+|+|++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~t-iii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLS-VLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCE-EEEEecChhhHh-hCCEEEEEeCCe
Confidence 699999999999999999999999999999999999999999999986533444 555677777775 499999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887653
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=334.50 Aligned_cols=224 Identities=21% Similarity=0.293 Sum_probs=182.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-YITGNITISGYP 906 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 906 (1426)
-+.++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 48899998877531 12356999999999999999999999999999999999986532 237999999988
Q ss_pred CCcc---c---c-cceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000556 907 KKQE---T---F-ARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG 977 (1426)
Q Consensus 907 ~~~~---~---~-~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~ 977 (1426)
+... . + ++.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 6431 1 1 24699999998 57889999999876544332 234445556789999999997543221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 978 ~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+.+||||||||++||+||+.+|+||++||||+|||..++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|++
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~ 237 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA 237 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999999775 999999999986 46678999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 238 -G~ive~g~~ 246 (330)
T PRK09473 238 -GRTMEYGNA 246 (330)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=330.86 Aligned_cols=219 Identities=20% Similarity=0.281 Sum_probs=180.4
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-+.++|+++.++.... ...+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~~~-------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i 74 (280)
T PRK13633 4 MIKCKNVSYKYESNEE-------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDT 74 (280)
T ss_pred eEEEeeeEEEcCCCCC-------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEec
Confidence 3789999988742100 012469999999999999999999999999999999999876 3589999999876
Q ss_pred Cc----ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 908 KQ----ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 908 ~~----~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. ...++.+||++|++.. +...||.|++.|..... .....+.+++++++++.+||.+..++.+ ..||
T Consensus 75 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 146 (280)
T PRK13633 75 SDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLS 146 (280)
T ss_pred cccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCC
Confidence 43 2245679999999742 23468999998865432 2234445567899999999998888774 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |+++
T Consensus 147 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~-~~d~v~~l~~-G~i~ 223 (280)
T PRK13633 147 GGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAV-EADRIIVMDS-GKVV 223 (280)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHh-cCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 999999999987 354 4999999986 7899
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
..|+.
T Consensus 224 ~~g~~ 228 (280)
T PRK13633 224 MEGTP 228 (280)
T ss_pred EecCH
Confidence 88875
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=328.23 Aligned_cols=219 Identities=26% Similarity=0.360 Sum_probs=177.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc------eEEEEEEE
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG------YITGNITI 902 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~------~~~G~i~i 902 (1426)
++++|+++.+. ++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 56788887663 346999999999999999999999999999999999976532 12799999
Q ss_pred cCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 903 SGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 903 ~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
+|.+... ..+++.++|++|++..++.+||+||+.+....... ........++.++++++.+++.+..++. +
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~ 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----V 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----c
Confidence 9987643 23445689999998766679999999875321110 0111123345688999999998877665 3
Q ss_pred CCCCHHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhc
Q 000556 979 SGLSTEQRKRLTIAVELV---------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAF 1048 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~---------~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~f 1048 (1426)
..||||||||++||++|+ .+|++|+|||||+|||+.+...+.+.|+++.++ |+|||+++|++. ++.+.+
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 579999999999999999 599999999999999999999999999999776 899999999986 577889
Q ss_pred ceEEEEecCcEEEEEcCCC
Q 000556 1049 DELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1049 D~v~ll~~gg~~v~~G~~~ 1067 (1426)
|++++|++ |+++..|+..
T Consensus 223 d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 223 DRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred CEEEEEEC-CeEEEecCHH
Confidence 99999985 7899988753
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=333.87 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=173.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCCc-------cceEEEecCCC-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP-------ERTAAYISQHD- 235 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d- 235 (1426)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 138999999998865432 13699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 000556 236 -NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1426)
Q Consensus 236 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1426)
.+.|.+||.+++........... ..+....++++|+.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47889999999876543210000 0112235677899999975221
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
+-+..++.|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+.. +.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 1124556899999999999999999999999999999999999999999999986543 45666688999999999999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 000556 395 IILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1426)
|++|++|++++.|+.+++.+
T Consensus 224 i~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred EEEEECCEEEEECCHHHHhh
Confidence 99999999999999988753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=289.05 Aligned_cols=197 Identities=25% Similarity=0.376 Sum_probs=170.5
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccceEEEeccCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDI 924 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~ 924 (1426)
....||++|++.|++||.+||+|||||||||||-+|+|...+ .+|+|.+.|++..+. ...+.+|+|+|...
T Consensus 21 ~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~ 98 (228)
T COG4181 21 GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH 98 (228)
T ss_pred cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee
Confidence 457899999999999999999999999999999999998764 489999999986531 23467999999999
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Q 000556 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1004 (1426)
Q Consensus 925 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlL 1004 (1426)
+.|++|..||+.....++..... .......+.++.+||.+..+..+ .+|||||+|||+||||++..|+|||-
T Consensus 99 Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~HyP-----~qLSGGEQQRVAiARAfa~~P~vLfA 170 (228)
T COG4181 99 LIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHYP-----AQLSGGEQQRVALARAFAGRPDVLFA 170 (228)
T ss_pred ccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccCc-----cccCchHHHHHHHHHHhcCCCCEEec
Confidence 99999999999988777653221 22334678899999998877763 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 1005 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 1005 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
||||-+||..+...|.+++-.+.++ |.|.|+++|||. +...|||.+-|.. |+++
T Consensus 171 DEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~ 225 (228)
T COG4181 171 DEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLV 225 (228)
T ss_pred cCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceec
Confidence 9999999999999999999988654 999999999985 6889999999986 6765
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=367.17 Aligned_cols=134 Identities=22% Similarity=0.247 Sum_probs=107.9
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000556 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1000 (1426)
Q Consensus 925 ~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~~L~---~~p~ 1000 (1426)
.+...||.|+|.++..-......+.++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44567999999876542211111223344456 58889999875 5655 3579999999999999998 5999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe-----cCcEEEEEcCC
Q 000556 1001 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1426)
Q Consensus 1001 iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~-----~gg~~v~~G~~ 1066 (1426)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|. .||+++..|+.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtp 901 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSP 901 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCH
Confidence 99999999999999999999999999888999999999986 34 8999999995 36899999976
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=331.98 Aligned_cols=219 Identities=20% Similarity=0.312 Sum_probs=177.4
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++... .....+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 588999998874210 0013599999999999999999999999999999999998763 479999999875
Q ss_pred Cc--------ccccceEEEeccCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000556 908 KQ--------ETFARISGYCEQNDIH-SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPG 977 (1426)
Q Consensus 908 ~~--------~~~~~~~gyv~q~~~~-~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~ 977 (1426)
.. ...++.++|++|++.. ....|++||+.|..... ....+...+.++++++.++|. +..++.
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 31 2345678999999742 22369999998864322 123344445688899999994 566655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 978 ~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+..||||||||++|||||+.+|++|+|||||+|||+.++..+++.|+++.++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999986 57889999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 788888874
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=367.26 Aligned_cols=214 Identities=26% Similarity=0.417 Sum_probs=178.2
Q ss_pred CCCCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCC
Q 000556 158 LPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQH 234 (1426)
Q Consensus 158 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~ 234 (1426)
+|+| ++.+||+|+|++|++|+.+||+|||||||||...+|-..++|. +|.|.+||+++++.+. |+.+|.|+|+
T Consensus 997 YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 997 YPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred CCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccC
Confidence 4555 4578999999999999999999999999999999999999998 9999999999998876 4789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 000556 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1426)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1426)
|.+|. .|+||||.|+.. .. + .+ +.++|+.. ....+ =+.+|++.+||
T Consensus 1073 P~LF~-~TIrENI~YG~~--~v-s-~~---------------------eIi~Aak~-----ANaH~---FI~sLP~GyDT 1118 (1228)
T KOG0055|consen 1073 PVLFN-GTIRENIAYGSE--EV-S-EE---------------------EIIEAAKL-----ANAHN---FISSLPQGYDT 1118 (1228)
T ss_pred chhhc-ccHHHHHhccCC--CC-C-HH---------------------HHHHHHHH-----hhhHH---HHhcCcCcccC
Confidence 98876 599999999821 11 1 11 11111110 01112 24589999999
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
.||+++. +||||||||++||||+++||+||+|||.||+||+.+.+-+.++|.+.. .++|+|+..|. ..+...+|.
T Consensus 1119 ~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHR--LSTIqnaD~ 1193 (1228)
T KOG0055|consen 1119 RVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHR--LSTIQNADV 1193 (1228)
T ss_pred ccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecc--hhhhhcCCE
Confidence 9999887 699999999999999999999999999999999999999999999864 46777775543 457889999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 000556 395 IILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~~~~ 414 (1426)
|+|+++|+|+++|++++++.
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999999975
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=320.61 Aligned_cols=199 Identities=27% Similarity=0.397 Sum_probs=171.7
Q ss_pred EeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc-cccceEEEeccCCCCCCCCCHHHH
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYES 934 (1426)
Q Consensus 856 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~q~~~~~~~lTv~e~ 934 (1426)
+|+|+|++|+|||+++|+|+||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999866 3579999999876542 234578999999999989999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q 000556 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014 (1426)
Q Consensus 935 l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~ 1014 (1426)
+.+..... .......++.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988887764 579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1015 AAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1015 ~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 999999999986 57788999999986 788888875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=321.45 Aligned_cols=211 Identities=21% Similarity=0.293 Sum_probs=176.5
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++. + ..|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 64 (232)
T PRK10771 2 LKLTDITWLYHH-------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHT 64 (232)
T ss_pred eEEEEEEEEECC-------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecC
Confidence 568888887741 1 238999999999999999999999999999999865 34799999998764
Q ss_pred cc-cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 909 ~~-~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
.. ..++.++|++|++.+++.+|+.||+.+..... ... .+..++.++++++.+|+.+..++.+ ..|||||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 136 (232)
T PRK10771 65 TTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQ 136 (232)
T ss_pred cCChhhccEEEEecccccccCCcHHHHHhcccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHH
Confidence 32 12456899999999999999999997653211 111 1234556899999999998888774 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 137 rv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 137 RVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999998764 899999999986 57788999999985 789998875
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=323.57 Aligned_cols=209 Identities=26% Similarity=0.344 Sum_probs=174.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEh
Confidence 377889888763 2459999999999999999999999999999999999865 3479999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 983 (1426)
.. ...++.++|++|++.+++ .|++||+.+....+ . . ..++++++++.++|. +..++. +..|||
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 134 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRD-----VKNLSG 134 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCC-----cccCCH
Confidence 43 234567899999988776 69999997653321 1 1 124578899999996 455554 457999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++.
T Consensus 135 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~ 212 (241)
T PRK14250 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVE 212 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 999999999986 57788999999985 78888
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 213 ~~~~ 216 (241)
T PRK14250 213 YAKT 216 (241)
T ss_pred eCCH
Confidence 8875
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=318.47 Aligned_cols=201 Identities=26% Similarity=0.325 Sum_probs=162.2
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCC--CC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHD--NH 237 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 237 (1426)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999987 999999999876543 235799999998 46
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMV 316 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 316 (1426)
++.+||+||+.+.....+..... .......+.+++.+||. +..+..
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSKK--------------------------------EARKEAVLLLLVGVGLPEEVLNRY- 142 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcHH--------------------------------HHHHHHHHHHHHHCCCChhHhhCC-
Confidence 67899999998865432110000 00011124677888985 445544
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+. +|+.++|+.+++.+++|+|+
T Consensus 143 ----~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~-tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 143 ----PHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGL-TLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHhcCeEE
Confidence 4469999999999999999999999999999999999999999999998653244 45557778888888999999
Q ss_pred EecCCeEEEec
Q 000556 397 LLSDGQIVYQG 407 (1426)
Q Consensus 397 lL~~G~iv~~G 407 (1426)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=334.23 Aligned_cols=218 Identities=21% Similarity=0.411 Sum_probs=174.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------------------Ccc
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------------------VPE 225 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------------------~~~ 225 (1426)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999988 99999999887542 113
Q ss_pred ceEEEecCCCC-CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHH
Q 000556 226 RTAAYISQHDN-HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304 (1426)
Q Consensus 226 ~~~~yv~Q~d~-~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~ 304 (1426)
+.++||+|++. .+...||+||+.|+....+.. . .+...+++++++
T Consensus 116 ~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~ 161 (320)
T PRK13631 116 RRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYLN 161 (320)
T ss_pred hcEEEEEECchhccccchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHHH
Confidence 67999999862 333469999998865322110 0 011234567889
Q ss_pred HhCCc-ccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEec
Q 000556 305 VLGLE-VCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383 (1426)
Q Consensus 305 ~lgL~-~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q 383 (1426)
.+||+ +..++ .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.. . +++|+.++|
T Consensus 162 ~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~-g~TiiivtH 234 (320)
T PRK13631 162 KMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-N-NKTVFVITH 234 (320)
T ss_pred HcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-C-CCEEEEEec
Confidence 99996 34443 3457999999999999999999999999999999999999999999998764 3 445556788
Q ss_pred CchhHHhhcCeEEEecCCeEEEecChhhHHH---HHHhcCCCCCCC
Q 000556 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE---FFESMGFKCPKR 426 (1426)
Q Consensus 384 ~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~---~F~~~Gf~cp~~ 426 (1426)
+.+++.+.+|+|++|++|++++.|+++++.. .++..|+.+|..
T Consensus 235 d~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 280 (320)
T PRK13631 235 TMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPRV 280 (320)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCChH
Confidence 8888999999999999999999999987642 344556655543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=330.40 Aligned_cols=217 Identities=24% Similarity=0.304 Sum_probs=180.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCce-EEEEEEEcCcc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYP 906 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~ 906 (1426)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4788999887731 12359999999999999999999999999999999999865321 13899999988
Q ss_pred CCcc---cccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 907 KKQE---TFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 907 ~~~~---~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.... ..++.+||++|++. .++..||.||+.|....+ ....++.+++++++++.++|.+..++.+ +.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCC
Confidence 6532 23567899999974 566789999998764322 2334455567899999999998777763 6899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++. + ..+|++++|++ |+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 9999999999863 4 67999999985 7999
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
..|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 98875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=317.79 Aligned_cols=192 Identities=26% Similarity=0.357 Sum_probs=160.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCC-CCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDN-HIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 243 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999987 9999999988754323457999999864 3556899
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.++....+ . ....++++++.+||++..++.+ ..
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHP-----LS 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCc-----hh
Confidence 999987542210 0 0123567889999988777655 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++++ .+ .+|+.++|+.+++.+++|+|++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QG-KAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998864 34 4455577888888899999999999997
Q ss_pred E
Q 000556 404 V 404 (1426)
Q Consensus 404 v 404 (1426)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=326.76 Aligned_cols=215 Identities=21% Similarity=0.261 Sum_probs=175.9
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 903 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 903 (1426)
..+.++|+++.++ .+.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3589999998873 24699999999999999999999999999999999997542 1358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000556 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVG 974 (1426)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg 974 (1426)
|.++.. ...++.++|++|++.+++ .||+||+.+.+..+. ... ..++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YTG-DMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---CcH-HHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 987531 234557899999998887 499999988654331 111 23445778888888743 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEE
Q 000556 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 975 ~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll 1054 (1426)
+..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 468999999999999999999999999999999999999999999999864 799999999986 588999999999
Q ss_pred ec----------CcEEEEEcCC
Q 000556 1055 KR----------GGQEIYVGPL 1066 (1426)
Q Consensus 1055 ~~----------gg~~v~~G~~ 1066 (1426)
++ +|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 2678888875
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=323.30 Aligned_cols=215 Identities=26% Similarity=0.312 Sum_probs=175.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1426)
.+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 378899988773 2369999999999999999999999999999999999632 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87632 124567999999988877 899999987643321 1122334456788999998853 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 699999999986 5788999999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 789998875
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-34 Score=334.18 Aligned_cols=222 Identities=17% Similarity=0.207 Sum_probs=178.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC--ceEEEEEEEcCcc
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--GYITGNITISGYP 906 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~ 906 (1426)
+.++|++..+... .+...+|+|||++|++||++||+|+||||||||+++|+|.... ...+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 6788998877532 1235699999999999999999999999999999999997642 2457999999987
Q ss_pred CCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCccc---ccc
Q 000556 907 KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPL---IQS 971 (1426)
Q Consensus 907 ~~~~---~----~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~---~~~ 971 (1426)
+... . .++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.+||.+. .+.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 6431 1 1346999999976 5688999999976422111000 1112345678899999999753 334
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcce
Q 000556 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDE 1050 (1426)
Q Consensus 972 ~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~ 1050 (1426)
. +..|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 4689999999999999999999999999999999999999999999999875 999999999986 57789999
Q ss_pred EEEEecCcEEEEEcCC
Q 000556 1051 LFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1051 v~ll~~gg~~v~~G~~ 1066 (1426)
+++|.+ |+++..|+.
T Consensus 229 i~vm~~-G~ive~g~~ 243 (330)
T PRK15093 229 INVLYC-GQTVETAPS 243 (330)
T ss_pred EEEEEC-CEEEEECCH
Confidence 999985 799999975
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=317.16 Aligned_cols=196 Identities=24% Similarity=0.351 Sum_probs=160.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999987 9999999998765432 1469999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.++........ .+....+.++++.+||++..+..+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKSV----------------------------------KEAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh-
Confidence 889999999988643221100 001123466889999987666544
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+.|||||||||+||++|+.+|++++|||||+|||..+...+.+.|+++++..+.| |+.++|+..++. .+|+|++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~t-ii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTS-FLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHh-hcCEEEE
Confidence 4799999999999999999999999999999999999999999999886533445 455667766664 5799999
Q ss_pred ecCCeEE
Q 000556 398 LSDGQIV 404 (1426)
Q Consensus 398 L~~G~iv 404 (1426)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=323.75 Aligned_cols=205 Identities=23% Similarity=0.355 Sum_probs=170.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-----------ccceEEEecC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----------PERTAAYISQ 233 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----------~~~~~~yv~Q 233 (1426)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35899999999999999999999999999999999999887 999999998875321 1357899999
Q ss_pred CCCCCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc
Q 000556 234 HDNHIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1426)
Q Consensus 234 ~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1426)
++.+++.+||+||+.++... ++. .. .+....++.+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGE-PK---------------------------------EEATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCC-CH---------------------------------HHHHHHHHHHHHHcCCcchh
Confidence 99889899999999875321 110 00 01123456778899998766
Q ss_pred cccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhc
Q 000556 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1426)
Q Consensus 313 dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~f 392 (1426)
|+.+ +.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ .+|+.++|+.+++.+++
T Consensus 139 ~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~tH~~~~~~~~~ 211 (250)
T PRK11264 139 TSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EK-RTMVIVTHEMSFARDVA 211 (250)
T ss_pred hCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cC-CEEEEEeCCHHHHHHhc
Confidence 6544 57999999999999999999999999999999999999999999998864 34 44555788888999999
Q ss_pred CeEEEecCCeEEEecChhhHH
Q 000556 393 DDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 393 D~vilL~~G~iv~~G~~~~~~ 413 (1426)
|+|++|++|++++.|+.+++.
T Consensus 212 d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988763
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=321.74 Aligned_cols=205 Identities=19% Similarity=0.334 Sum_probs=170.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-----ccceEEEecCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNHIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 239 (1426)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 45999999999999999999999999999999999999887 999999998875421 1356899999998899
Q ss_pred CCCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 240 EMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
.+||+||+.++.. ..+... .+....++++++.+||++..+..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASK----------------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 9999999987532 111000 011224567889999987666544
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.|||||||||+||+|++.+|++++|||||+|||..+...+.+.|+++.+ .+ ++|+.++|+.+++.+++|+|++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EG-MTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999998764 34 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-34 Score=323.98 Aligned_cols=219 Identities=20% Similarity=0.263 Sum_probs=176.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1426)
-+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478999998763 2469999999999999999999999999999999999754 21 1479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.+... ...++.+||++|++.+++. ||+||+.+....+. ....++..+.++++++.+++.+....... ....
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87642 1335679999999888875 99999987643321 11233344567889999998642111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999865 799999999986 57789999999985 79
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9988875
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=355.31 Aligned_cols=123 Identities=24% Similarity=0.289 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CeEE
Q 000556 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1003 (1426)
Q Consensus 928 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p---~iLl 1003 (1426)
.+||.|++.|...++ . .....+.++.+||.. ..+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865432 1 112467899999976 34544 3579999999999999999999 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe-----cCcEEEEEcCC
Q 000556 1004 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1426)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~-----~gg~~v~~G~~ 1066 (1426)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 446899999994 57899999975
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=322.78 Aligned_cols=218 Identities=19% Similarity=0.259 Sum_probs=174.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--Cc-eEEEEEEEcCcc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISGYP 906 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g~~ 906 (1426)
+++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.+
T Consensus 7 ~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~ 73 (251)
T PRK14244 7 SVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGID 73 (251)
T ss_pred EeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEe
Confidence 5677777663 2469999999999999999999999999999999999754 11 258999999987
Q ss_pred CCcc-----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000556 907 KKQE-----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1426)
Q Consensus 907 ~~~~-----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~L 981 (1426)
+... ..++.++|++|++.+++. |+.||+.+....+. ........++.++++++.+++.+........ .+..|
T Consensus 74 i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~L 150 (251)
T PRK14244 74 VYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFEL 150 (251)
T ss_pred hHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhC
Confidence 5321 245678999999888875 99999987643331 1112233445688999999997532211111 14689
Q ss_pred CHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 982 SgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |+++
T Consensus 151 S~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~ 227 (251)
T PRK14244 151 SGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIV 227 (251)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEE
Confidence 9999999999999999999999999999999999999999999985 4899999999986 57788999999986 7898
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
+.|+.
T Consensus 228 ~~~~~ 232 (251)
T PRK14244 228 EYNTT 232 (251)
T ss_pred EeCCH
Confidence 88874
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=331.43 Aligned_cols=222 Identities=19% Similarity=0.235 Sum_probs=180.7
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 903 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 903 (1426)
..+.++|+++.+.. +.+.+|+|||++|++||++||+|+||||||||+++|+|.... .+.+|+|.+|
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36899999988742 124599999999999999999999999999999999997532 2357999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
|.++.. ...++.++||+|++.+++ .|++||+.|..... ...+.+..++.++++++.++|.+..++.++.. .
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~--~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~-~ 223 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN--GINDRKILEKIVEKSLKSAALWDEVKDDLDKA-G 223 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc--CCChHHHHHHHHHHHHHHcCCcchhhhhhhCC-c
Confidence 998752 234667999999998875 79999999864321 11112223445788899998865444444433 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
.+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999875 799999999986 46778999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++..|+.
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.45 Aligned_cols=215 Identities=21% Similarity=0.246 Sum_probs=176.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
-+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 367889887763 246999999999999999999999999999999999975421 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++ .|++||+.|...... ........++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87642 123566899999998887 899999988654321 1122344456788999998853 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
...||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 468999999999999999999999999999999999999999999999876 699999999986 5788899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |++++.|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14270 221 M-GDLIEFNKT 230 (251)
T ss_pred C-CeEEEeCCH
Confidence 5 789998875
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.99 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=175.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.+.++|+++.++ .+.+|+|+||+|++||+++|+|+||||||||+++|+|..... +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 478899988773 235999999999999999999999999999999999964321 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+.+..++.++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87642 124567899999988887 899999988654321 1122334566888899998753 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999854 899999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 6 788888864
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.90 Aligned_cols=218 Identities=23% Similarity=0.332 Sum_probs=176.2
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISGY 905 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~ 905 (1426)
++++|+++.+. ++.+|+|+||++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 67889888763 236999999999999999999999999999999999975421 25899999998
Q ss_pred cCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000556 906 PKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1426)
Q Consensus 906 ~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 980 (1426)
++.. ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+.... ..+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSELN-KPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHHh-CChhh
Confidence 7642 123567999999998887 899999987653321 11223344567889999998643211111 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999986 57788999999986 788
Q ss_pred EEEcCC
Q 000556 1061 IYVGPL 1066 (1426)
Q Consensus 1061 v~~G~~ 1066 (1426)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 888874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.56 Aligned_cols=216 Identities=22% Similarity=0.296 Sum_probs=178.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc-e--EEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG-Y--ITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g 904 (1426)
.+.++|+++.++ +..+|+|+|+++++||+++|+|+||||||||+++|+|..++. + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 478999988773 235999999999999999999999999999999999975532 1 479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++ .|++||+.+....+. ..+....++.++++++.+++.+ ..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 123557999999998887 899999987654331 1223334456788999998853 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 468999999999999999999999999999999999999999999999865 699999999997 6889999999997
Q ss_pred c----CcEEEEEcCC
Q 000556 1056 R----GGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~----gg~~v~~G~~ 1066 (1426)
. .|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999885
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=368.43 Aligned_cols=210 Identities=25% Similarity=0.404 Sum_probs=177.1
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||++.+. +++++|+|+|++++||+++||+|+||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3699999987542 1246999999999999999999999999999999999987 4 37999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+.+ ..+++.++||+|++.++. -|++||+.++. | +.++ +.++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 754 456788999999999886 59999998752 1 2232 346777887777653 46777765
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
| .+||||||||++|||||+++|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~ 558 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD 558 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC
Confidence 4 5799999999999999999999999999999999999999999999885 5899999999985 5678999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 559 -G~i~e~G~~ 567 (588)
T PRK11174 559 -GQIVQQGDY 567 (588)
T ss_pred -CeEeecCCH
Confidence 799988874
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=319.16 Aligned_cols=202 Identities=25% Similarity=0.301 Sum_probs=166.5
Q ss_pred ccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC--CccceEEEec-CCCCCCC
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--VPERTAAYIS-QHDNHIG 239 (1426)
Q Consensus 163 ~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 239 (1426)
..+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.+.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4467999999999999999999999999999999999999987 99999999875432 1235789997 5566778
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+||+||+.+.....+... .+....++.+++.+||++..|+.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 9999999988654322100 0011235667889999988887664
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++.+++|++++|+
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERG-TTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCC-CEEEEEecCHHHHHHhCCEEEEEe
Confidence 6999999999999999999999999999999999999999999999865334 445557788788899999999999
Q ss_pred CCeEEEec
Q 000556 400 DGQIVYQG 407 (1426)
Q Consensus 400 ~G~iv~~G 407 (1426)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=327.65 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=174.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1426)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 34899999999999999999999999999999999999998 9999999998865432 357999999973 6777
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++.+..+... .+....++++++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~---- 138 (279)
T PRK13635 97 ATVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREP---- 138 (279)
T ss_pred ccHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc----
Confidence 899999988654321100 011234677899999988777655
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+.+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~-~~tilivsH~~~~~~-~~d~i~~l~~ 215 (279)
T PRK13635 139 -HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK-GITVLSITHDLDEAA-QADRVIVMNK 215 (279)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcC-CCEEEEEecCHHHHH-cCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999986533 444555667777775 5999999999
Q ss_pred CeEEEecChhhHHH---HHHhcCCCCC
Q 000556 401 GQIVYQGPRELVLE---FFESMGFKCP 424 (1426)
Q Consensus 401 G~iv~~G~~~~~~~---~F~~~Gf~cp 424 (1426)
|++++.|+.+++.. .+...|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999987653 3344455443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=325.71 Aligned_cols=223 Identities=20% Similarity=0.267 Sum_probs=179.6
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+..+.. +...+.+.+|+|+|+++++||++||+|||||||||||++|+|..++ .+|+|.++|.++.
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 789999988742110 0000124699999999999999999999999999999999998763 4899999998764
Q ss_pred cc---cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000556 909 QE---TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~---~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LS 982 (1426)
.. ..++.++|++|++. +.+.+|+.|++.+....+. ........+.++++++.++|. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 31 22356899999975 5677899999987654432 123334445688999999994 555554 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v 1061 (1426)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 57778999999985 7888
Q ss_pred EEcCC
Q 000556 1062 YVGPL 1066 (1426)
Q Consensus 1062 ~~G~~ 1066 (1426)
..|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88764
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=309.61 Aligned_cols=190 Identities=47% Similarity=0.837 Sum_probs=162.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCC--CCceEEEEEEEcCc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGNITISGY 905 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~ 905 (1426)
.+.++|+++.++.... ...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~~-------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSPS-------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCCC-------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 4789999988752100 01246999999999999999999999999999999999986 5 45899999998
Q ss_pred cCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 906 PKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 906 ~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
+......++.++|++|++.+++.+|++||+.+...++ .||+||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8764445677999999998888999999997642110 499999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999987567888999999986 7877654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=337.90 Aligned_cols=194 Identities=24% Similarity=0.384 Sum_probs=169.1
Q ss_pred eeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000556 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1426)
Q Consensus 859 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 931 (1426)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 99999999999999999999999999999998663 47999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000556 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgL 1011 (1426)
+||+.|..... .....+++++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12234456899999999998888764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|+.++..+++.|++++++ |+|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999875 899999999986 57888999999986 789998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=315.53 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=163.2
Q ss_pred eeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000556 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1426)
Q Consensus 859 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 931 (1426)
|||+++++ |+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 92 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNV 92 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCH
Confidence 99999999 99999999999999999999998653 48999999987532 1235578999999988889999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000556 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgL 1011 (1426)
.||+.+..... .....+++++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 93 RENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred HHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 99998764321 1223445688999999998777665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |+++..|
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999775 899999999986 47788999999986 6877654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=324.02 Aligned_cols=220 Identities=22% Similarity=0.258 Sum_probs=178.0
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITIS 903 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 903 (1426)
..++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3589999998873 23699999999999999999999999999999999998542 1358999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
|.+... ..+++.++|++|++.+++. |++||+.+....+. ....+..++.++++++.+++.+........ .+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHE-NA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhC-Cc
Confidence 987642 1345679999999888875 99999987654321 112223345688899999986421111111 14
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G 243 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-G 243 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-C
Confidence 68999999999999999999999999999999999999999999999975 799999999986 57788999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++..|+.
T Consensus 244 ~i~~~g~~ 251 (272)
T PRK14236 244 KLVEYGDT 251 (272)
T ss_pred EEEecCCH
Confidence 89988875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=336.94 Aligned_cols=190 Identities=24% Similarity=0.390 Sum_probs=167.2
Q ss_pred eeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc-------ccccceEEEeccCCCCCCCCCH
Q 000556 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-------ETFARISGYCEQNDIHSPFVTV 931 (1426)
Q Consensus 859 ~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~q~~~~~~~lTv 931 (1426)
|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+... ...++.++|++|+..++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999998663 48999999987532 1235679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCC
Q 000556 932 YESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011 (1426)
Q Consensus 932 ~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgL 1011 (1426)
+||+.|... ...++.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345889999999998887764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1012 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1012 D~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|+.++..+++.|+++.++ |+|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999775 899999999986 68899999999985 799999875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.42 Aligned_cols=219 Identities=23% Similarity=0.256 Sum_probs=175.9
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 367888887763 246999999999999999999999999999999999975531 3579999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000556 905 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1426)
Q Consensus 905 ~~~~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 980 (1426)
.++.. ...++.++|++|++.+++ .||.||+.+...... ....+...+.++++++.+++.+........ ....
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKS-HAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhc-Cccc
Confidence 87531 234567999999998887 899999987643221 112233345678888888885422111111 1458
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999975 699999999986 57888999999986 789
Q ss_pred EEEcCC
Q 000556 1061 IYVGPL 1066 (1426)
Q Consensus 1061 v~~G~~ 1066 (1426)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 988874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=315.99 Aligned_cols=197 Identities=31% Similarity=0.436 Sum_probs=165.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--ccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 242 (1426)
.++|+|+|+++++| +++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999987 999999998875432 2357899999998999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.+.....+... .+....++.+++.+||++..++.+ .
T Consensus 89 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (211)
T cd03264 89 VREFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKI-----G 129 (211)
T ss_pred HHHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCch-----h
Confidence 9999988654321100 001224567889999987777655 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|++++. + ++|+.++|+..++.+++|++++|++|+
T Consensus 130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGK 206 (211)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998753 3 556667888888889999999999999
Q ss_pred EEEec
Q 000556 403 IVYQG 407 (1426)
Q Consensus 403 iv~~G 407 (1426)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-34 Score=328.21 Aligned_cols=207 Identities=25% Similarity=0.329 Sum_probs=170.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--CC---ccceEEEecCCCC-CC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--FV---PERTAAYISQHDN-HI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1426)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .. .++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35899999999999999999999999999999999999987 9999999998741 11 2357999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
...||+||+.++....+... .+....++.+++.+||.+..++.+
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-- 139 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLPE----------------------------------DEVRKRVDNALKRTGIEHLKDKPT-- 139 (283)
T ss_pred ccccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhhhhCCc--
Confidence 56899999988643221100 011234677889999987766554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ ++|+.++|+.+++.++||+|++|
T Consensus 140 ---~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g-~tillvsH~~~~~~~~~dri~~l 215 (283)
T PRK13636 140 ---HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELG-LTIIIATHDIDIVPLYCDNVFVM 215 (283)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEEE
Confidence 57999999999999999999999999999999999999999999999875334 45555788888898999999999
Q ss_pred cCCeEEEecChhhHHH
Q 000556 399 SDGQIVYQGPRELVLE 414 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~~ 414 (1426)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988753
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.15 Aligned_cols=173 Identities=24% Similarity=0.305 Sum_probs=136.8
Q ss_pred eeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHH
Q 000556 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLL 936 (1426)
Q Consensus 857 L~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~ 936 (1426)
|.==.++|..||+++++||||-||||+.++|||..++. +|+ .. .-.++|-||--.-....||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPd--eg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPD--EGS----EE-------DLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCC--CCC----Cc-------cceEeecceeecCCCCCcHHHHHH
Confidence 44445788899999999999999999999999976643 554 10 123677788655556789999875
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q 000556 937 YSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1016 (1426)
Q Consensus 937 f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~ 1016 (1426)
-...-+.. ...+..++++-++|++..+..+ .+|||||.|||+||.+|.+++++.+||||++.||++.+
T Consensus 424 ~~~~~~~~-------~s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFG-------SSYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhcc-------cchhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 43222111 1123467888999999999885 58999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 1017 AIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 1017 ~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
..+-+.||+...+ ++|.+++-||... +--..||+++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998764 8999999999753 445678888875
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=321.30 Aligned_cols=206 Identities=21% Similarity=0.341 Sum_probs=170.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++....+ ++.++|++|++..++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 9999999988765432 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.+..+....... .+....++.+++.+||++..+..
T Consensus 93 ~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~----- 134 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSA---------------------------------EQREDRANELMEEFHIEHLRDSM----- 134 (241)
T ss_pred CcHHHHHhhhhhcccccCH---------------------------------HHHHHHHHHHHHHcCCHHHhhcc-----
Confidence 9999999875432110000 01123456788999998765544
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
++.|||||||||+||++++.+|++++|||||+|||+.+...+.+.|+++.. .+. +|+.++|+..++.+++|+|++|++
T Consensus 135 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~-tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 135 GQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGL-GVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCC-EEEEEEcCHHHHHHhcCEEEEEeC
Confidence 457999999999999999999999999999999999999999999998754 344 455567777889999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.08 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=178.9
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.++++|+++.+. ...+|+|+||++++||+++|+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 488999998873 235999999999999999999999999999999999976532 1369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ...++.++|++|+..+++ .|+.||+.+...... ..+..+.++.+.++++.+++.+..+...+. .+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIHK-SAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhcC-Ccc
Confidence 87531 134567899999988888 899999987643321 112223345688999999986532222221 246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecC-
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG- 1057 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g- 1057 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++|
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999865 4899999999986 588899999999863
Q ss_pred ---cEEEEEcCC
Q 000556 1058 ---GQEIYVGPL 1066 (1426)
Q Consensus 1058 ---g~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999885
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=326.05 Aligned_cols=216 Identities=23% Similarity=0.289 Sum_probs=180.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++.. ....+|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 47899999887421 12359999999999999999999999999999999999876 3579999999876
Q ss_pred Cc---ccccceEEEeccCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDI-HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~-~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ...++.+||++|++. .++..||.||+.+..... ....+...++++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 43 234567999999974 566789999998764422 123334445688999999998877775 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|++.. + ..+|++++|++ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 9999999999863 4 46999999986 78888
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.80 Aligned_cols=201 Identities=26% Similarity=0.370 Sum_probs=167.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 45899999999999999999999999999999999999987 99999999887542 34589999999888899999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
||+.++....+... .+....++.+++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVEK----------------------------------MQRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 99988643221100 001124567889999987666544 479
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec--CCe
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~--~G~ 402 (1426)
||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQET-GKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 9999999999999999999999999999999999999999999875433 4445557888889999999999998 599
Q ss_pred EEEecChh
Q 000556 403 IVYQGPRE 410 (1426)
Q Consensus 403 iv~~G~~~ 410 (1426)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988653
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=330.87 Aligned_cols=208 Identities=20% Similarity=0.243 Sum_probs=174.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--C
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD--N 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d--~ 236 (1426)
..+|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|.++..... ++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 56999999999999999999999999999999999999887 9999999998765432 35799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1426)
+.+.+||.+++........... ..+....+.++++.+||+. ..++
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------------------------------~~~~~~~~~~~l~~~gL~~~~~~~- 150 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------------------------------AAERREKALAMMAKVGLRPEHYDR- 150 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------------------------------HHHHHHHHHHHHHHCCCChHHhcC-
Confidence 8889999999987544321000 0012235678899999963 4554
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
.++.|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+. .+++++.++|+...+.+++|+|
T Consensus 151 ----~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~-~g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 151 ----YPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQE-LGLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred ----CCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEE
Confidence 45579999999999999999999999999999999999999999999998653 3556666899999999999999
Q ss_pred EEecCCeEEEecChhhHHH
Q 000556 396 ILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~~ 414 (1426)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999988753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=318.48 Aligned_cols=202 Identities=25% Similarity=0.341 Sum_probs=166.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999987 9999999988764432 3469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-CcccccccccCc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-LEVCADTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vG~~ 319 (1426)
+||+||+.++....+.. .....+.+++.++ +.+..++.
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~---- 128 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRR---- 128 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCC----
Confidence 99999998865322100 0011244556665 44444443
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
++.||||||||++||++|+.+|++++|||||+|||+.+..++.+.|+++++. .+++|+.++|+.+++.+++|+|++|+
T Consensus 129 -~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 129 -GGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4579999999999999999999999999999999999999999999987653 24455557788888999999999999
Q ss_pred CCeEEEecChhhH
Q 000556 400 DGQIVYQGPRELV 412 (1426)
Q Consensus 400 ~G~iv~~G~~~~~ 412 (1426)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998775
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=337.19 Aligned_cols=195 Identities=24% Similarity=0.362 Sum_probs=168.7
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC-------CccceEEEecCCCCCCCCCC
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF-------VPERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 242 (1426)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++||+|+..+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999988 99999999886531 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998853200 0123567889999987777554 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++.+++|+|++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 799999999999999999999999999999999999999999999987543 4555668888899999999999999999
Q ss_pred EEEecChhhHH
Q 000556 403 IVYQGPRELVL 413 (1426)
Q Consensus 403 iv~~G~~~~~~ 413 (1426)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999875
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-34 Score=322.64 Aligned_cols=194 Identities=21% Similarity=0.284 Sum_probs=164.6
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHH
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRE 245 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 245 (1426)
.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999987 9999999976543 2457999999998888899999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 000556 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1426)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1426)
|+.++... . ....++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~~-----~-----------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLKG-----Q-----------------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhcccc-----h-----------------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 99874210 0 0112456788999987666544 5799
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000556 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1426)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~ 405 (1426)
|||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+..+.| |+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-viivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT-VLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCE-EEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999876543444 5557888888889999999999999999
Q ss_pred ecChh
Q 000556 406 QGPRE 410 (1426)
Q Consensus 406 ~G~~~ 410 (1426)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88754
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=324.20 Aligned_cols=205 Identities=25% Similarity=0.357 Sum_probs=167.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCC-CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999987 999999999876432 2457999999963 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++....+... .+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVPP----------------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 999999988643211100 011234577889999987777655
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+. ++++|+.++|..+++. .+|+|++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 479999999999999999999999999999999999999999999998653 3344444566666664 7999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=309.71 Aligned_cols=202 Identities=19% Similarity=0.307 Sum_probs=152.3
Q ss_pred CCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcC
Q 000556 825 EPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG 904 (1426)
Q Consensus 825 ~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g 904 (1426)
.|..+-.+||+|.++ +.++++++++|-|.--..+||+||||.||||||++|.|..++ ..|+.+-|
T Consensus 583 ~PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn- 647 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN- 647 (807)
T ss_pred CCCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc-
Confidence 345678889998875 346799999999999999999999999999999999998764 35655432
Q ss_pred ccCCcccccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 905 YPKKQETFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 905 ~~~~~~~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.+-.+|+..|... +-..-|.-|.|.-. .. .+.++ ....|..+||...++++- ++.||
T Consensus 648 -------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--FN----lpyq~----ARK~LG~fGL~sHAHTik----ikdLS 706 (807)
T KOG0066|consen 648 -------HRLRIGWFDQHANEALNGEETPVEYLQRK--FN----LPYQE----ARKQLGTFGLASHAHTIK----IKDLS 706 (807)
T ss_pred -------ceeeeechhhhhHHhhccccCHHHHHHHh--cC----CChHH----HHHHhhhhhhhhccceEe----eeecC
Confidence 2335787777532 23345666766421 11 22222 456788999999988873 57899
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
||||-||++|.--++.|+||||||||++||..+...+-++|++. ...||+++|+-.. |.+.-..++|+.+.|.--.
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eI 782 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEI 782 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhc
Confidence 99999999999999999999999999999999999999999876 4679999999764 4455557777766554334
Q ss_pred EcCC
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~G~~ 1066 (1426)
.|..
T Consensus 783 dGdF 786 (807)
T KOG0066|consen 783 DGDF 786 (807)
T ss_pred cccH
Confidence 4543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=328.32 Aligned_cols=205 Identities=23% Similarity=0.337 Sum_probs=169.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCC-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1426)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45899999999999999999999999999999999999998 999999999875321 1346899999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1426)
.+..+||+||+.|+....+... .+....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFSE----------------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 3446899999988653221100 01122456789999996 455554
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.. . +++|+.++|+.+++.++||+|
T Consensus 143 ~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 P-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-A-GHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-C-CCEEEEEeCCHHHHHHhCCEE
Confidence 4 47999999999999999999999999999999999999999999998753 3 555666888999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=353.26 Aligned_cols=218 Identities=25% Similarity=0.321 Sum_probs=183.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|++++++ ++.+|+|+||++++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 78899988773 24699999999999999999999999999999999998763 4799999998764
Q ss_pred cc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 909 QE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 909 ~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.. ..++.++|++|++.+++.+||+|++.+....+.. ...+....++.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 21 1235689999999888999999999886432211 11223334456889999999998877764 47999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57789999999985 789988
Q ss_pred cCCCc
Q 000556 1064 GPLGR 1068 (1426)
Q Consensus 1064 G~~~~ 1068 (1426)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 88753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=318.14 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=166.9
Q ss_pred EeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc--eEEEEEEEcCccCCcccc-cceEEEeccCCC--CCCCCC
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISGYPKKQETF-ARISGYCEQNDI--HSPFVT 930 (1426)
Q Consensus 856 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~q~~~--~~~~lT 930 (1426)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 479999999999999999999999999999999986531 158999999987654322 357899999984 557789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000556 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK---PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1426)
Q Consensus 931 v~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEP 1007 (1426)
+.|++.+...... . .....++.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543321 1 1233345689999999998 344544 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1008 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999764 899999999987 57788999999985 788888874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=315.26 Aligned_cols=195 Identities=26% Similarity=0.376 Sum_probs=163.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1426)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 45999999999999999999999999999999999999887 999999999876432 135699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.+.....+... .+....++++++.+||++..++.+
T Consensus 91 ~~~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (214)
T cd03292 91 PDRNVYENVAFALEVTGVPP----------------------------------REIRKRVPAALELVGLSHKHRALP-- 134 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCCh--
Confidence 99999999988654322100 001123567888999987766554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.||||||||++||+||+.+|++++|||||+|||+.+...+.+.|+++.+ .+ ++|+.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~-~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AG-TTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999998754 34 45555778888888999999999
Q ss_pred cCCeE
Q 000556 399 SDGQI 403 (1426)
Q Consensus 399 ~~G~i 403 (1426)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=321.24 Aligned_cols=215 Identities=25% Similarity=0.265 Sum_probs=175.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP- 906 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 906 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 478999988773 23599999999999999999999999999999999998653 47999999987
Q ss_pred ----CCcc---c----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000556 907 ----KKQE---T----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSL 972 (1426)
Q Consensus 907 ----~~~~---~----~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 972 (1426)
+... . .++.++|++|++. +.+.+|+.|++.+...... ........+.++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 4321 1 2346899999974 5677899999876432111 1122234556889999999974 55554
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceE
Q 000556 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 973 vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v 1051 (1426)
+..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999998765 899999999986 466789999
Q ss_pred EEEecCcEEEEEcCC
Q 000556 1052 FLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1052 ~ll~~gg~~v~~G~~ 1066 (1426)
++|++ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 799998875
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.39 Aligned_cols=216 Identities=24% Similarity=0.283 Sum_probs=175.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCce---EEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY---ITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~---~~G~i~i~g 904 (1426)
-+.++|+++.++ ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 467888887763 2469999999999999999999999999999999999764322 379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ..+++.++|++|++.+++.+|+.||+.+...... ....+...+.++++++.+++.+ ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87642 1345678999999999998999999987543221 1122333455677777777643 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999864 799999999987 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 6 789988875
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=314.01 Aligned_cols=224 Identities=22% Similarity=0.308 Sum_probs=181.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC-C--ceEEEEEEEcCc
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT-G--GYITGNITISGY 905 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~-~--~~~~G~i~i~g~ 905 (1426)
++.+|++.++.... +...+++||||++++||++||+|.|||||||+.++|.|..+ + ...+|+|.++|.
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 46778877665421 24579999999999999999999999999999999999765 2 356789999998
Q ss_pred cCCc---cc----ccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCC
Q 000556 906 PKKQ---ET----FARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976 (1426)
Q Consensus 906 ~~~~---~~----~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~ 976 (1426)
++-. .. +-+.+++++|++. +.|.+||.+.+.-......... ..++..+++.++|+.+||.+.....- .
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~--~ 149 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLK--S 149 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHh--h
Confidence 6432 11 2347999999975 5688999887765444322111 34556677899999999987533221 1
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
.+.+|||||||||.||.||+.+|++|+.||||++||...++.|+++|+++.+ .|.|+|++|||.. -+.+.+|||.||.
T Consensus 150 YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY 228 (316)
T COG0444 150 YPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY 228 (316)
T ss_pred CCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE
Confidence 2468999999999999999999999999999999999999999999999986 5999999999997 4889999999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
. |++|..|+.
T Consensus 229 a-G~iVE~g~~ 238 (316)
T COG0444 229 A-GRIVEEGPV 238 (316)
T ss_pred C-cEEEEeCCH
Confidence 5 899999996
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.14 Aligned_cols=219 Identities=20% Similarity=0.242 Sum_probs=175.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.+.++|+++.+. ++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 377889888763 235999999999999999999999999999999999976532 2369999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.+... ...++.++|++|++.+++. |++||+.+....+.. ...+..++.++++++.+++.+....... ....
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC--ChhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 87532 1345679999999988875 999999886543311 1122234557788888887542221111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-Ce
Confidence 899999999999999999999999999999999999999999999985 5899999999986 57788999999985 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 8888875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=313.57 Aligned_cols=211 Identities=23% Similarity=0.345 Sum_probs=175.7
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.+... .+.+.+|+|+||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~ 70 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELY 70 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhH
Confidence 5678888776310 012569999999999999999999999999999999999865 35899999998764
Q ss_pred cc------cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 909 QE------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
.. ..++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.++|.+..++.+ +.||
T Consensus 71 ~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS 143 (220)
T TIGR02982 71 GASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLS 143 (220)
T ss_pred hcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCC
Confidence 21 235679999999988888999999988654321 1233444567899999999988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ +.+.+|++++|++ |++
T Consensus 144 ~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 144 GGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 9999999999999999999999999999999999999999999876 4899999999985 4689999999986 553
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=312.90 Aligned_cols=202 Identities=23% Similarity=0.276 Sum_probs=173.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+++++|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 488999987763 23599999999999999999999999999999999998663 479999999876
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
.....++.++|++|++.+++.+|+.|++.+....+. .. .++.++++++.++|.+..++.+ ..||+||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543344568999999988888999999987654321 11 2235678999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
|++||++++.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++..
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999998888999999999997 68899999999863
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=317.29 Aligned_cols=201 Identities=24% Similarity=0.371 Sum_probs=166.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 35899999999999999999999999999999999999987 9999999988754322 357999999987776 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccCcc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGDEM 320 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vG~~~ 320 (1426)
||+||+.++....+ . ....++.+++.+||+ +..++ .
T Consensus 92 tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~-----~ 128 (241)
T PRK14250 92 TVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATR-----D 128 (241)
T ss_pred hHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhC-----C
Confidence 99999987532110 0 011245678889996 34443 3
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+..||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++....+. +|+.++|+.+++.+++|+|++|++
T Consensus 129 ~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~-tii~~sH~~~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 129 VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNL-TVIWITHNMEQAKRIGDYTAFLNK 207 (241)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCC-EEEEEeccHHHHHHhCCEEEEEeC
Confidence 4579999999999999999999999999999999999999999999987653344 555578888889999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|+++..|+.+++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=335.94 Aligned_cols=199 Identities=24% Similarity=0.402 Sum_probs=169.4
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCCCCCCCC
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1426)
|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 899999999999999999999999999999999987 999999998875321 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.|+.+... . .+....++++++.+||++..++.+ +
T Consensus 92 v~enl~~~~~~~~--~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~ 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------------------------------SERRISFERVIELLGIGHLLGRLP-----G 130 (354)
T ss_pred HHHHHHHHhhccC--h----------------------------------hHHHHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999998653210 0 001224567899999988777554 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+.+++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987543 4455557888889999999999999999
Q ss_pred EEEecChhhHH
Q 000556 403 IVYQGPRELVL 413 (1426)
Q Consensus 403 iv~~G~~~~~~ 413 (1426)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=313.69 Aligned_cols=198 Identities=28% Similarity=0.351 Sum_probs=162.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35899999999999999999999999999999999999987 9999999998765432 2469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.+.....+... .+....++.+++.+||.+..+..+
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 144 (228)
T PRK10584 100 IPTLNALENVELPALLRGESS----------------------------------RQSRNGAKALLEQLGLGKRLDHLP- 144 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-
Confidence 999999999988643221100 011234567889999987766554
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++++..+.|+|+ ++|+.+++ +.+|++++
T Consensus 145 ----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~-~sH~~~~~-~~~d~i~~ 218 (228)
T PRK10584 145 ----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIL-VTHDLQLA-ARCDRRLR 218 (228)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEE-EecCHHHH-HhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986533445444 66666666 55999999
Q ss_pred ecCCeEEEe
Q 000556 398 LSDGQIVYQ 406 (1426)
Q Consensus 398 L~~G~iv~~ 406 (1426)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=314.37 Aligned_cols=194 Identities=30% Similarity=0.410 Sum_probs=162.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC------ccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------PERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 238 (1426)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 45999999999999999999999999999999999999887 999999999876542 135799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.++....+... ...+..++++++.+||++..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFP-- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCh--
Confidence 89999999998754321100 001124567889999987666554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|..+++.+++|++++|
T Consensus 136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~tH~~~~~~~~~d~i~~l 210 (214)
T TIGR02673 136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RG-TTVIVATHDLSLVDRVAHRVIIL 210 (214)
T ss_pred ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCEEEEe
Confidence 46999999999999999999999999999999999999999999998754 34 45555778888999999999999
Q ss_pred cCCe
Q 000556 399 SDGQ 402 (1426)
Q Consensus 399 ~~G~ 402 (1426)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.35 Aligned_cols=206 Identities=32% Similarity=0.489 Sum_probs=170.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 45899999999999999999999999999999999999887 9999999987754332 35689999998887889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 92 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 132 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSR----------------------------------AEDDALVAAALAQVDLAHLAGRDY----- 132 (258)
T ss_pred CHHHHHHhhhcccCCCc----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----
Confidence 99999988542111000 001123567889999987666655
Q ss_pred ccCChhHhhHHHHHHHHh------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 322 RGISGGERKRVTTGEMMV------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~------~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
..|||||||||+||+||+ .+|++++|||||+|||+.+...+.+.|+++++..+ .+|+.++|+..++.+++|+|
T Consensus 133 ~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 133 PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERG-LAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHHHHHhcCEE
Confidence 469999999999999999 59999999999999999999999999999863334 45555778888899999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999987764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.39 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=175.4
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc--eEEEEEEEcC
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG--YITGNITISG 904 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~--~~~G~i~i~g 904 (1426)
..+.++|+++.++ +.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 3588999988762 24899999999999999999999999999999999986531 1579999999
Q ss_pred ccCCcccc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 000556 905 YPKKQETF-ARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP---LIQSLVGLPGV 978 (1426)
Q Consensus 905 ~~~~~~~~-~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~vg~~~~ 978 (1426)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..++. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87653322 356999999974 4466799998876433221 111 2256889999999976 33444 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~- 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH- 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999998764 899999999986 57788999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 789988874
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=319.32 Aligned_cols=219 Identities=25% Similarity=0.273 Sum_probs=176.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 478899988763 246999999999999999999999999999999999964321 1379999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ...++.++|++|++.+++. ||+||+.|....+. .......++.+.++++.+++.+....... ..+.
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRLH-DSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHhh-cChh
Confidence 87643 2235678999999988874 99999998754432 11223334568888999888542111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||+|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~ 225 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GK 225 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999875 699999999986 47788999999986 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 226 i~~~g~~ 232 (253)
T PRK14261 226 LIEFDKT 232 (253)
T ss_pred EEEcCCH
Confidence 9888875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=318.92 Aligned_cols=203 Identities=26% Similarity=0.393 Sum_probs=166.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+.+|+|+|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++..++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 45899999999999999999999999999999999999987 9999999998765432 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHh-CCcccccccccCc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGDE 319 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vG~~ 319 (1426)
+||+||+.++..... . + + ....++.+++.+ ++.+..++.
T Consensus 95 ~tv~~~l~~~~~~~~---~-~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~---- 134 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R-D---Q-----------------------------FQERIKWVYELFPRLHERRIQR---- 134 (237)
T ss_pred CcHHHHHHHhhhccC---h-h---H-----------------------------HHHHHHHHHHHHHHHHHHHhCc----
Confidence 999999987542110 0 0 0 001233445556 465544443
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+.| |+.++|+.+++.+.+|++++|+
T Consensus 135 -~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~ 211 (237)
T PRK11614 135 -AGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMT-IFLVEQNANQALKLADRGYVLE 211 (237)
T ss_pred -hhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCE-EEEEeCcHHHHHhhCCEEEEEe
Confidence 457999999999999999999999999999999999999999999998764 3445 5557788889999999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=317.28 Aligned_cols=202 Identities=26% Similarity=0.306 Sum_probs=165.8
Q ss_pred eecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHHHHH
Q 000556 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETL 247 (1426)
Q Consensus 168 L~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 247 (1426)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999987 9999999998765432 248999999999999999999
Q ss_pred HHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChh
Q 000556 248 AFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGG 327 (1426)
Q Consensus 248 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGG 327 (1426)
.+.......... ..+....++.+++.+||++..++.+ +.||||
T Consensus 76 ~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPDLS--------------------------------KSERRAIVEEHIALVGLTEAADKRP-----GQLSGG 118 (230)
T ss_pred HHHHHhcccCCC--------------------------------HHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHH
Confidence 875321000000 0011224567889999987777655 469999
Q ss_pred HhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000556 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1426)
Q Consensus 328 qrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1426)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~-~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHR-VTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999999999999999999999999999999998865334 45555778888899999999999999999998
Q ss_pred ChhhH
Q 000556 408 PRELV 412 (1426)
Q Consensus 408 ~~~~~ 412 (1426)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 65543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=313.72 Aligned_cols=193 Identities=25% Similarity=0.342 Sum_probs=160.4
Q ss_pred cCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcccccceEEEeccCCCCCCCCC
Q 000556 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930 (1426)
Q Consensus 851 ~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lT 930 (1426)
++.+.+|+|+||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...+.+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~~t 100 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPELT 100 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCCCc
Confidence 345679999999999999999999999999999999999865 358999999976421 111223456799
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCC
Q 000556 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010 (1426)
Q Consensus 931 v~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsg 1010 (1426)
|+||+.+....+. .+....++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|
T Consensus 101 v~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~~g 172 (224)
T cd03220 101 GRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVLAV 172 (224)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 9999987654321 223344556888999999988877764 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 1011 LD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 173 LD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 173 GDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999998777899999999986 57788999999985 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=319.96 Aligned_cols=219 Identities=22% Similarity=0.293 Sum_probs=178.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 904 (1426)
.+.++|+++.++ .+.+|+|||++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 578999998874 24699999999999999999999999999999999997642 13589999999
Q ss_pred ccCCc----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000556 905 YPKKQ----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1426)
Q Consensus 905 ~~~~~----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~ 980 (1426)
.++.. ...++.++|++|++.+++ .|++||+.+..... .....++.++.+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87642 134567899999988887 89999998764322 112333344556788999998753322111 12468
Q ss_pred CCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEE
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 981 LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~ 1060 (1426)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999986 57789999999986 799
Q ss_pred EEEcCC
Q 000556 1061 IYVGPL 1066 (1426)
Q Consensus 1061 v~~G~~ 1066 (1426)
+..|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998885
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=321.98 Aligned_cols=207 Identities=24% Similarity=0.321 Sum_probs=170.4
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCC--
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD-- 235 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d-- 235 (1426)
++.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999987 9999999988764322 34699999986
Q ss_pred CCCCCCCHHHHHHHhhhhc-CCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccc
Q 000556 236 NHIGEMTVRETLAFSARCQ-GVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCAD 313 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~d 313 (1426)
.+.+.+||+||+.+..... +.. ..+....++.+++.+||+ ...+
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gl~~~~~~ 145 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLTSLD----------------------------------ESEQKARIAELLDMVGLRSEDAD 145 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC----------------------------------HHHHHHHHHHHHHHcCCChhhhh
Confidence 4667899999998754211 000 001123456788999996 5555
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
.. ++.|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++.+.. +++|+.++|+...+.+++|
T Consensus 146 ~~-----~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d 219 (265)
T TIGR02769 146 KL-----PRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQ 219 (265)
T ss_pred CC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhc
Confidence 44 45799999999999999999999999999999999999999999999986533 4455557888888999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 000556 394 DIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1426)
++++|++|++++.|+.+++.
T Consensus 220 ~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 220 RVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEEeCCEEEEECCHHHHc
Confidence 99999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=288.13 Aligned_cols=205 Identities=26% Similarity=0.374 Sum_probs=177.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
..+|+|+|+.|.+||.++++||||||||||||+++|..+|. .|+|.+||++++.- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999998 99999999987643 33458999999999999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
||++|+.+++|.++. +...++...+...||++..+..| -.|
T Consensus 93 dNvafgL~l~Gi~k~----------------------------------~R~~~a~q~l~~VgL~~~~~~~i-----~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA----------------------------------QRREIAHQMLALVGLEGAEHKYI-----WQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH----------------------------------HHHHHHHHHHHHhCcccccccce-----Eee
Confidence 999999999886532 12235677899999998776544 579
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec--CCe
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS--DGQ 402 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~--~G~ 402 (1426)
||||||||.|||||..+|+.|+||||+++||.-++.++.+.|-++.+.. +..+..++|+.+|..-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~t-gk~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET-GKQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHh-CCeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 9999999999999999999999999999999999999999988887654 4455558999999999999999997 489
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
|+..=+.+-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998877664433
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=318.94 Aligned_cols=219 Identities=18% Similarity=0.216 Sum_probs=177.8
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITIS 903 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 903 (1426)
..+..+++++.+. ++.+|+|+|+.++|||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 7 ~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 73 (261)
T PRK14263 7 IVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFL 73 (261)
T ss_pred ceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEEC
Confidence 3567777776652 356999999999999999999999999999999999976431 258999999
Q ss_pred CccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000556 904 GYPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 904 g~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~ 978 (1426)
|.++.. ..+++.++|++|++.++ .+|+.||+.+....+. . .....+.++++++.++|.+..+...+. ..
T Consensus 74 g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~~-~~ 147 (261)
T PRK14263 74 GQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLKV-SG 147 (261)
T ss_pred CEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhhC-Cc
Confidence 987632 13456799999998877 5999999988754331 1 122345688999999986543322221 24
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe---
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK--- 1055 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~--- 1055 (1426)
+.||+|||||++|||||+++|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEeccc
Confidence 6899999999999999999999999999999999999999999999985 4799999999986 5778999999996
Q ss_pred ----cCcEEEEEcCC
Q 000556 1056 ----RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ----~gg~~v~~G~~ 1066 (1426)
++|+++..|+.
T Consensus 226 ~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 226 SQGTRTGYLVEMGPT 240 (261)
T ss_pred ccccCCceEEEeCCH
Confidence 46899999875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.45 Aligned_cols=207 Identities=23% Similarity=0.292 Sum_probs=166.9
Q ss_pred EeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC----CCCceeEEEEcCccCCCCCc-cceEEEecCCCC--CCC
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS----SLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDN--HIG 239 (1426)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~----~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 239 (1426)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 47899999999999999999999999999999999987 6 9999999988764422 257999999974 556
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+|+.|++.+.....+... .+....++++++.+||++.. ...+.
T Consensus 78 ~~t~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~--~~~~~ 121 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLS----------------------------------KQARALILEALEAVGLPDPE--EVLKK 121 (230)
T ss_pred ccCHHHHHHHHHHHcCccH----------------------------------HHHHHHHHHHHHHcCCCchH--HHHhC
Confidence 7899999987543211000 00123456789999997420 11123
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.+..|||||||||+||++++.+|++++|||||+|||..+...+.+.|+++++. .+++|+.++|..+++..++|+|++|+
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 44579999999999999999999999999999999999999999999988653 34455557788889999999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=364.91 Aligned_cols=211 Identities=27% Similarity=0.417 Sum_probs=178.7
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+|.|+. ++++|+|+|++++|||++||+||||||||||+++|.|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 46999999999862 35699999999999999999999999999999999998763 58999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-------ccccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-------PLIQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-------~~~~~~vg~~ 976 (1426)
+++ ..+++.++||+|++.++. -||+||+.++.. +.++ +.++++++..++. +..|+.+|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~----eei~~a~k~a~~~d~I~~lp~g~dt~vge- 461 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATD----EEIEEALKLANAHEFIANLPDGYDTIVGE- 461 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccceecC-
Confidence 765 456788999999999987 899999987531 1222 3355666655443 356888884
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+..+||||||||++||||++++|+||+||||||+||+.++..|++.++++. +|+|+|+++|+++ ....+|+|++|++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 446899999999999999999999999999999999999999999999886 5799999999986 3455999999996
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|..
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 789999985
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=353.53 Aligned_cols=218 Identities=26% Similarity=0.317 Sum_probs=182.6
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-++++|+++.++ ++.+|+||||++++||++||+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 378899988773 24699999999999999999999999999999999998753 479999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhc--C-CC-CCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLR--L-PP-EVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 908 ~~~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr--~-~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.... .++.++|++|++.+++.+||+|++.+..... . .. ..+.++.+++++++++.+||.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 4321 2346899999998889999999998753211 0 00 0122334466889999999988777764 5
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999986 57788999999985 78
Q ss_pred EEEEcCCC
Q 000556 1060 EIYVGPLG 1067 (1426)
Q Consensus 1060 ~v~~G~~~ 1067 (1426)
+++.|+..
T Consensus 223 i~~~g~~~ 230 (510)
T PRK09700 223 SVCSGMVS 230 (510)
T ss_pred Eeeecchh
Confidence 99998864
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=323.75 Aligned_cols=215 Identities=20% Similarity=0.277 Sum_probs=175.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1426)
.+.++|+++.++ ...+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 588999998873 2359999999999999999999999999999999999642 1 02579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++. ||.||+.+....+. ..+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 87532 1245679999999988874 99999988654321 112233345678889988874 233333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 689999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=322.11 Aligned_cols=215 Identities=20% Similarity=0.260 Sum_probs=175.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 488999998773 2369999999999999999999999999999999999642 1 13579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++. |++||+.+..... ........++.++++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87642 1235679999999988874 9999998764322 11112233455788899888853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 467999999999999999999999999999999999999999999999965 689999999986 5778999999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 5 789998874
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=318.34 Aligned_cols=215 Identities=25% Similarity=0.330 Sum_probs=175.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1426)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 478899988773 2469999999999999999999999999999999999764 11 2589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.+... ...++.++|++|++.+++ .||+||+.+....+. ....+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAG--VKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87532 124567999999988776 799999987643321 1122333456788999999853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 468999999999999999999999999999999999999999999999854 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=318.39 Aligned_cols=207 Identities=24% Similarity=0.385 Sum_probs=169.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|++|++||+++|+|||||||||||++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 35899999999999999999999999999999999999763 22389999999987542 113579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----cccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCAD 313 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1426)
++ +||+||+.+.....+.... .+....++.+++.+||. +..+
T Consensus 94 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 139 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLH 139 (247)
T ss_pred CC-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhh
Confidence 88 9999999886543221000 00112356778899997 4454
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
+. ++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ + .+|+.++|+..++.+++|
T Consensus 140 ~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 140 DS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISD 211 (247)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCC
Confidence 43 457999999999999999999999999999999999999999999998764 3 455557888888999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 000556 394 DIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++|++++.|+.+++.
T Consensus 212 ~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 212 RTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=318.00 Aligned_cols=206 Identities=21% Similarity=0.296 Sum_probs=164.8
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1426)
.+|+|+|++|++||+++|+|||||||||||++|+|.++|+. ..+|+|.++|.++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999988621 1389999999876421 1245799999998777
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----ccccc
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCADT 314 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 314 (1426)
+ +||+||+.++....+.... .+....++..++.+|+. +..++
T Consensus 101 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 8999999986533211000 00112345667777763 33444
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
.++.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+++|+
T Consensus 147 -----~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 -----NALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK--ES-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred -----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhCCE
Confidence 345799999999999999999999999999999999999999999999984 24 4555578888889999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 000556 395 IILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1426)
|++|++|+++..|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=369.50 Aligned_cols=209 Identities=27% Similarity=0.386 Sum_probs=178.7
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+|+|+. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 46999999999852 124699999999999999999999999999999999998764 48999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 976 (1426)
+++ ..+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 764 356788999999999886 59999997642 1 22 23478888888887654 5666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999886 589999999985 5678999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 799999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=329.17 Aligned_cols=217 Identities=18% Similarity=0.195 Sum_probs=171.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCCc-------cceEEEecCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP-------ERTAAYISQHDN 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-------~~~~~yv~Q~d~ 236 (1426)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 569999999999999999999999999999999999986421 238999999998765432 136999999875
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccc
Q 000556 237 --HIGEMTVRETLAFSARCQGV-GSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCAD 313 (1426)
Q Consensus 237 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 313 (1426)
+.+.+||.+++.+....... +..+ .. ..+....+.++|+.+||.+..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~----------------~~-------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWW----------------QR-------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhcccccc----------------cc-------------HHHHHHHHHHHHHHCCCCChHH
Confidence 67889999999764321100 0000 00 0011234677899999975321
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
+-+..+..|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+. .+++|+.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~-~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQN-NNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHh-cCCEEEEEECCHHHHHHhCC
Confidence 113445689999999999999999999999999999999999999999999998653 34566668999999999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 000556 394 DIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998774
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=310.26 Aligned_cols=199 Identities=22% Similarity=0.289 Sum_probs=165.7
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++ .+.+|+|||+++++||++||+|+||||||||+++|+|..++ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~ 66 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIR 66 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcc
Confidence 46778877663 24699999999999999999999999999999999998663 4799999998754
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
. ..+++.++|++|++.+++.+|+.|++.+....+. . ..++.++++++.+||.+..++. +..||||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~ 135 (204)
T PRK13538 67 RQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQ 135 (204)
T ss_pred cchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHH
Confidence 3 2345678999999988899999999988654321 1 1234688999999998877765 357999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEE
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll 1054 (1426)
||++||++|+++|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++-..-+|++++
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999999999999999999999999999877999999999986 354443566555
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=323.85 Aligned_cols=204 Identities=27% Similarity=0.399 Sum_probs=168.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCC-CCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDN-HIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~ 239 (1426)
..+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 34899999999999999999999999999999999999987 9999999998764322 356999999875 466
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+||+||+.|+....+... .+....++.+++.+||++..++.+
T Consensus 92 ~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~--- 134 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLPP----------------------------------IEIRKRVDRALAEIGLEKYRHRSP--- 134 (274)
T ss_pred cchHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCCc---
Confidence 7899999988653321100 011224567889999988777655
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. . +++|+.++|+..++ ..+|+|++|+
T Consensus 135 --~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~-g~til~~tH~~~~~-~~~d~v~~l~ 209 (274)
T PRK13644 135 --KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-K-GKTIVYITHNLEEL-HDADRIIVMD 209 (274)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHH-hhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999998764 3 44555567777777 5699999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999988764
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=318.07 Aligned_cols=211 Identities=22% Similarity=0.330 Sum_probs=171.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999987 9999999988754432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++..... ..+...... ...+....++++++.+|+++..++.+
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLA---- 141 (242)
T ss_pred CCHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCCh----
Confidence 999999988643110 000000000 00011234677899999987766554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.+ +. +|+.++|+.+++.++||+|++|++
T Consensus 142 -~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 142 -GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KH-SVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CC-EEEEEECCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999998753 34 555577888899999999999999
Q ss_pred CeEEEecChhhH
Q 000556 401 GQIVYQGPRELV 412 (1426)
Q Consensus 401 G~iv~~G~~~~~ 412 (1426)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=323.36 Aligned_cols=205 Identities=25% Similarity=0.353 Sum_probs=170.8
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1426)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4899999999999999999999999999999999999988 9999999988754322 356899999863 34468
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+||+.++....+... .+....++.+++.+||.+..++.+
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 135 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVP----- 135 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 99999987653221100 011224577899999988777655
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+.+|+|++|++|
T Consensus 136 ~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 136 HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETY-GMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999986532 455565788888999999999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
++++.|+.+++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998874
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.42 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=171.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC----------------ccceE
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----------------PERTA 228 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----------------~~~~~ 228 (1426)
..+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 45999999999999999999999999999999999999987 999999998775321 14579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC
Q 000556 229 AYISQHDNHIGEMTVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1426)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1426)
+|++|++.+++.+||+||+.++... .+... .+....++++++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMAR----------------------------------AEAEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcC
Confidence 9999999899999999999875321 11000 001123567789999
Q ss_pred CcccccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchh
Q 000556 308 LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1426)
Q Consensus 308 L~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~ 387 (1426)
+++..+.. ++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+. .+++++.++|+.++
T Consensus 136 l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~ 209 (252)
T TIGR03005 136 LADKADHM-----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGF 209 (252)
T ss_pred ChhHhhcC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHH
Confidence 98766644 4579999999999999999999999999999999999999999999988653 34555557888888
Q ss_pred HHhhcCeEEEecCCeEEEecChhhHH
Q 000556 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1426)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=317.30 Aligned_cols=210 Identities=22% Similarity=0.318 Sum_probs=164.7
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC--C---ccceEEEecCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1426)
.+|+|+|+.|++|++++|+|||||||||||++|+|..+ +....+|+|.++|+++... . .++.++|++|++..+
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 58999999999999999999999999999999999864 1001289999999887532 1 135799999998777
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+ .||+||+.++....+.... .+....++..++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK---------------------------------AYLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999987543221000 001123456678888854222222 2
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.++.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++. .+ .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK--AR-YTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CeEEEEEecHHHHHHhCCEEEEE
Confidence 3456799999999999999999999999999999999999999999999874 24 45555778888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=320.20 Aligned_cols=221 Identities=21% Similarity=0.276 Sum_probs=172.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 240 (1426)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999987 9999999998765332 2348899999999999
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++....... +...... . .+..+ ....+....++.+++.+||++..++.+
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~------~-~~~~~---------~~~~~~~~~~~~~l~~~gl~~~~~~~~---- 151 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLL------K-TPAFR---------RAESEALDRAATWLERVGLLEHANRQA---- 151 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhc------c-ccccc---------cchhHHHHHHHHHHHhCChhhhhhCCh----
Confidence 99999999864311000 0000000 0 00000 000012234567889999987666554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+. .+++|+.++|+..++.+++|++++|++
T Consensus 152 -~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 152 -GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999987653 245555578888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988763
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=367.82 Aligned_cols=205 Identities=28% Similarity=0.388 Sum_probs=165.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
.++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++.+..+ ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 45899999999999999999999999999999999999998 9999999999987765 468999999987765 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|++|||.++.. . + .+.+.+.++. .+ .++.+ -.+++..||.+|+.+
T Consensus 542 TI~eNi~~~~~-~---~-~e~i~~al~~---a~------------------------l~~~i--~~lp~G~dt~ige~G- 586 (686)
T TIGR03797 542 SIFENIAGGAP-L---T-LDEAWEAARM---AG------------------------LAEDI--RAMPMGMHTVISEGG- 586 (686)
T ss_pred cHHHHHhcCCC-C---C-HHHHHHHHHH---cC------------------------cHHHH--HhccccccccccCCC-
Confidence 99999998632 1 1 1111111110 00 01111 235677899999865
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
.+||||||||++||||++++|++++||||||+||+.+..+|.+.|+++ ++|+|+ ++|.. ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~Ii-ItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIV-IAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEE-EecCh-HHHHcCCEEEEEECC
Confidence 579999999999999999999999999999999999999999999874 356555 55544 556779999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=323.33 Aligned_cols=205 Identities=25% Similarity=0.344 Sum_probs=169.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC----ccceEEEecCCCC-CCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV----PERTAAYISQHDN-HIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 239 (1426)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999999875422 2467999999864 344
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
..||.||+.|+....+... .+....++++++.+||++..++.+
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 142 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAP--- 142 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc---
Confidence 5799999998754322100 011234677899999988777665
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.| |+.++|+..++.. +|++++|+
T Consensus 143 --~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-illvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 143 --HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGIT-IILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecChHHHhc-CCEEEEEE
Confidence 4699999999999999999999999999999999999999999999986533444 5556777777765 99999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|+++++|+.+++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=326.36 Aligned_cols=237 Identities=27% Similarity=0.424 Sum_probs=189.1
Q ss_pred HhhcCCCCCccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCCCcccceEeecceEEEeCCeEEEEEcC
Q 000556 107 IDRVGIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGP 186 (1426)
Q Consensus 107 ~~~~~~~~p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp 186 (1426)
-+++.++-|+-.+..|++++-.+ ..++++|+|+||.+.+|+-++|+||
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~PP--------------------------------g~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAAPP--------------------------------GQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cCCCCCCCCCceeeEeeeeecCC--------------------------------CCCCcceecceeEecCCceEEEECC
Confidence 33566666777788888886221 1236799999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCcc---ceEEEecCCCCCCCCCCHHHHHHHhhhhcCCCchhhHh
Q 000556 187 PASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263 (1426)
Q Consensus 187 ~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 263 (1426)
||||||||.++|.|..+|. +|.|.+||.+++.+.+. +.+||.||+-.+|+ -||.|||.- +.
T Consensus 371 SgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIaR---f~--------- 434 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIAR---FG--------- 434 (580)
T ss_pred CCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHHh---cc---------
Confidence 9999999999999999987 99999999999887764 78999999876776 599999952 21
Q ss_pred HHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhHhhHHHHHHHHhcCCc
Q 000556 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343 (1426)
Q Consensus 264 ~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~ 343 (1426)
++.|.+...+++...+ +.+ -++.|++.+||.||+.+. +||||||||+++|||++++|.
T Consensus 435 -------------~~~d~~kIieAA~lAg------vHe--lIl~lP~GYdT~iG~~G~-~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 435 -------------EEADPEKVIEAARLAG------VHE--LILRLPQGYDTRIGEGGA-TLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred -------------ccCCHHHHHHHHHHcC------hHH--HHHhCcCCccCccCCCCC-CCCchHHHHHHHHHHHcCCCc
Confidence 1122222222221111 111 256899999999998765 799999999999999999999
Q ss_pred EeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecChhhHHHHH
Q 000556 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFF 416 (1426)
Q Consensus 344 vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~~~~~~~~F 416 (1426)
+++||||-|+||+.....+.+.|.+.. ..++|+|+ ++| .+.+...+|+|++|++|++-.+|+++|++...
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k-~rG~~vvv-iaH-RPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAK-ARGGTVVV-IAH-RPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHH-HcCCEEEE-Eec-CHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999998864 35566655 444 45788999999999999999999999998743
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=309.87 Aligned_cols=195 Identities=26% Similarity=0.320 Sum_probs=166.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (201)
T cd03231 2 EADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDF 66 (201)
T ss_pred EEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEeccc
Confidence 4677776653 24699999999999999999999999999999999998763 47999999987542
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
..+++.++|++|++.+++.+|++|++.+.... . .+++++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 132 (201)
T cd03231 67 QRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQR 132 (201)
T ss_pred ccHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHH
Confidence 23456789999999888899999999874311 1 2345788999999988777653 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEE
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll 1054 (1426)
|++||++|+.+|++|+|||||+|||+.+...+++.|+++.++|+|+|+++|++. ++...+|+++++
T Consensus 133 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 133 RVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999999999999999999999999999998877999999999986 577889999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=321.51 Aligned_cols=204 Identities=22% Similarity=0.305 Sum_probs=167.8
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGEM 241 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 241 (1426)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 4899999999999999999999999999999999999987 9999999998754322 357899999974 67888
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|+++|+.|.....+... .+....++.+++.+||.+..++.+
T Consensus 100 ~v~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVPY----------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 99999988653221100 001123567789999987766544
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.| |+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~t-iiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT-IISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCchHHhc-CCEEEEEECC
Confidence 5799999999999999999999999999999999999999999999876433445 4446666677765 9999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
++++.|+.+++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=316.45 Aligned_cols=204 Identities=24% Similarity=0.310 Sum_probs=167.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC------C---CccceEEEecCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE------F---VPERTAAYISQHD 235 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~------~---~~~~~~~yv~Q~d 235 (1426)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 35999999999999999999999999999999999999887 9999999987631 1 1135689999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 000556 236 NHIGEMTVRETLAFSA-RCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1426)
Q Consensus 236 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1426)
.+++.+||+||+.+.. ...+... .+....++.+++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLSK----------------------------------DQALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhC
Confidence 9999999999997532 1111100 0011245678899999876665
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
.+ +.||||||||++||++++.+|++++|||||+|||+.+...+.+.|+++.. .+ ++++.++|+..++.+++|+
T Consensus 138 ~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tii~~sh~~~~~~~~~d~ 210 (242)
T PRK11124 138 FP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TG-ITQVIVTHEVEVARKTASR 210 (242)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhcCE
Confidence 54 47999999999999999999999999999999999999999999998753 34 4555577888888899999
Q ss_pred EEEecCCeEEEecChhhH
Q 000556 395 IILLSDGQIVYQGPRELV 412 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~~ 412 (1426)
+++|++|++++.|+.+++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999988754
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.64 Aligned_cols=215 Identities=25% Similarity=0.324 Sum_probs=174.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--GG-YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g 904 (1426)
.+.++|+++.++ .+.+|+|+|+++++||++||+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 478899988763 2469999999999999999999999999999999999643 21 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87632 134567999999988887 6999999886543321 112223345677888887742 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||+|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|++. ++.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 589999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14255 222 T-GNLIEFADT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 788888874
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=313.39 Aligned_cols=196 Identities=24% Similarity=0.339 Sum_probs=163.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc------cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 238 (1426)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 45999999999999999999999999999999999999987 9999999988754321 35789999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+.+||+||+.+.....+... .+....++.+++.+||.+..++.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 135 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG----------------------------------DDIRRRVSAALDKVGLLDKAKNFP-- 135 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCc--
Confidence 89999999988654322100 001123456788999987666544
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.+ . +++++.++|+.+++...+|+|++|
T Consensus 136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l 210 (222)
T PRK10908 136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-V-GVTVLMATHDIGLISRRSYRMLTL 210 (222)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-C-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999998754 3 455666788888999999999999
Q ss_pred cCCeEE
Q 000556 399 SDGQIV 404 (1426)
Q Consensus 399 ~~G~iv 404 (1426)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999975
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=357.16 Aligned_cols=208 Identities=28% Similarity=0.436 Sum_probs=169.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+++|+|+|+.++|||.+||+||+|||||||+++|.|.++|+ +|+|.+||.++++... ++.++||+|++.+|. .
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 56899999999999999999999999999999999999997 9999999999887765 578999999887776 7
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+|||.++..-- + .+.+.+.++.. ..++.+. .++++.||.||+.+.
T Consensus 418 TI~~NI~~g~~~a---t-~eei~~a~k~a---------------------------~~~d~I~--~lp~g~dt~vge~G~ 464 (567)
T COG1132 418 TIRENIALGRPDA---T-DEEIEEALKLA---------------------------NAHEFIA--NLPDGYDTIVGERGV 464 (567)
T ss_pred cHHHHHhcCCCCC---C-HHHHHHHHHHh---------------------------ChHHHHH--hCcccccceecCCCc
Confidence 9999999974310 0 01111111110 0122222 357788999996655
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
.||||||||++||||++.+|++|+||||||+||+.+...|.+.++++. +++|+++ +.|..+.+ ..+|+|++|++|
T Consensus 465 -~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~--~~rT~ii-IaHRlsti-~~aD~IiVl~~G 539 (567)
T COG1132 465 -NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL--KGRTTLI-IAHRLSTI-KNADRIIVLDNG 539 (567)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh--cCCEEEE-EeccHhHH-HhCCEEEEEECC
Confidence 699999999999999999999999999999999999999999999765 3467777 66655444 449999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
++++.|+++++..
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=320.70 Aligned_cols=204 Identities=27% Similarity=0.384 Sum_probs=169.0
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC--C---ccceEEEecCCCC-CCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDN-HIG 239 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~-~~~ 239 (1426)
.+|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|.++... . .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5899999999999999999999999999999999999987 99999999887421 1 1357999999863 344
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+||+||+.++....+. .+ .+....+..+++.+||++..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGL-SK---------------------------------EEVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCC-CH---------------------------------HHHHHHHHHHHHHCCCchhhcCChh--
Confidence 57999999876422111 00 0111235678899999887776554
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ . +++|+.++|+..++.+++|+|++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~-~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-E-GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999864 3 4555667888889999999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999998874
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=321.85 Aligned_cols=218 Identities=22% Similarity=0.379 Sum_probs=175.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL--ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEh
Confidence 488999988773 124699999999999999999999999999999999998663 589999999876
Q ss_pred CcccccceEEEeccCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 908 KQETFARISGYCEQNDIHS--PFVTVYESLLYSAWLRLP-PEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~--~~lTv~e~l~f~a~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
.....++.++|++|++.+. ...+++|++.+....... ........++.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234689999997653 234788888653211000 01111223445788999999998877764 479999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999986 577899999777 4 7899988
Q ss_pred CCC
Q 000556 1065 PLG 1067 (1426)
Q Consensus 1065 ~~~ 1067 (1426)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=322.17 Aligned_cols=205 Identities=22% Similarity=0.320 Sum_probs=166.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCC-
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDN- 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~- 236 (1426)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35899999999999999999999999999999999999987 999999998875421 1356899999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 315 (1426)
.+...||+||+.+.....+... .+....++.+++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3334799999988643221100 001123567788899973 44443
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++.+++|++
T Consensus 143 -----~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 -----PFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-S-GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEeccHHHHHHhCCEE
Confidence 457999999999999999999999999999999999999999999998864 3 445555778888888999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=349.51 Aligned_cols=220 Identities=23% Similarity=0.340 Sum_probs=181.3
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|...+++.+|+|.++|.+..
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 56788887763 24699999999999999999999999999999999998653224899999998764
Q ss_pred ccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCC
Q 000556 909 QET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP-EVDSETRKMFIEEVMELVELKPLI-QSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~vg~~~~~~LS 982 (1426)
... .++.+||++|++.+++.+||.|++.+....+... ....+..+++++++++.+++.+.. +.. +..||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCC
Confidence 321 2356899999998889999999998764332111 122333456688999999998654 343 35799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
|||||||+||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~ 221 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVA 221 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEee
Confidence 99999999999999999999999999999999999999999999888999999999986 57788999999986 78888
Q ss_pred EcCCCc
Q 000556 1063 VGPLGR 1068 (1426)
Q Consensus 1063 ~G~~~~ 1068 (1426)
.|+...
T Consensus 222 ~~~~~~ 227 (500)
T TIGR02633 222 TKDMST 227 (500)
T ss_pred ecCccc
Confidence 887653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=318.80 Aligned_cols=206 Identities=19% Similarity=0.302 Sum_probs=165.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCCC-----ccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987410 13899999998865321 23569999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----cccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCAD 313 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1426)
++ +||+||+.|+.+..+... .+....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGANK----------------------------------KDLDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcchhhhhc
Confidence 77 899999998654322100 00112356678888884 2334
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
+ .++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+.+++.+++|
T Consensus 150 ~-----~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~-~tiiivsH~~~~~~~~~d 221 (258)
T PRK14268 150 S-----PALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--D-YTIVIVTHNMQQAARISD 221 (258)
T ss_pred C-----ChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998742 4 455557888888999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 000556 394 DIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++|++++.|+.+++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=312.12 Aligned_cols=197 Identities=23% Similarity=0.322 Sum_probs=166.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCCHH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 244 (1426)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|. +|+|.++|+++.... .+.++|++|++..++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999987 999999998765322 35799999999889999999
Q ss_pred HHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccC
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~L 324 (1426)
||+.+.....+. .+..+..+++.+||++..|..+ ..|
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKA-----KQF 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhH-----hhC
Confidence 999876432210 0112456788999987766544 469
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEE
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1426)
Q Consensus 325 SGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv 404 (1426)
|||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. .+.+ |+.++|+..++.+.+|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~t-iii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGIT-VILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCE-EEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999998754 3444 555677778889999999999999999
Q ss_pred EecChh
Q 000556 405 YQGPRE 410 (1426)
Q Consensus 405 ~~G~~~ 410 (1426)
+.|+..
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999865
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=325.87 Aligned_cols=211 Identities=20% Similarity=0.284 Sum_probs=168.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|++|++||+++|+|||||||||||++|+|..++. ...+|+|.++|.++... ..++.++||+|++..
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 01389999999988532 224679999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
+ ..||+||+.|+....+... .+ ..+..++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND-RK--------------------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh-HH--------------------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 6 5899999998643321100 00 011224456777777654455665
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
. ....|||||||||+||||++.+|+|++|||||+|||+.+...+.++|+++.+ + .+++.++|....+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~-~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--K-YSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEE
Confidence 4 4558999999999999999999999999999999999999999999998753 3 4566678888888999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=310.58 Aligned_cols=195 Identities=25% Similarity=0.369 Sum_probs=163.0
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1426)
|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999987 9999999988765432 357999999998899999999998
Q ss_pred HhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhH
Q 000556 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1426)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1426)
++...... .. .+.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGLK-LT---------------------------------AEDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred cccccccC-cc---------------------------------HHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 75421100 00 001224567899999987777654 4799999
Q ss_pred hhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEec
Q 000556 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG 407 (1426)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G 407 (1426)
|||++||++++.+|++++|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++.+++|+|++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999886533 445555788888999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=320.72 Aligned_cols=211 Identities=27% Similarity=0.418 Sum_probs=162.7
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++.++. +++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehH
Confidence 356788776631 124599999999999999999999999999999999998653 4799999998754
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCCC
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGVS 979 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~~ 979 (1426)
. ..+++.++|++|++.+++ .||.||+.+... ..... .+.+.++..++.+..+.+. | ...+.
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~----~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~ 137 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSME----RVIEAAKLAGAHDFISELPEGYDTIVGEQGA 137 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCcccccchhhcCCC
Confidence 2 234567999999987765 699999976421 11111 1223333333333222110 0 11246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.|||||||||+|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++ +.+|++++|++ |+
T Consensus 138 ~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v~~l~~-G~ 213 (237)
T cd03252 138 GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRIIVMEK-GR 213 (237)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEEEEEEC-CE
Confidence 8999999999999999999999999999999999999999999999964 899999999986 35 56999999985 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 214 i~~~~~~ 220 (237)
T cd03252 214 IVEQGSH 220 (237)
T ss_pred EEEEcCH
Confidence 9998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.20 Aligned_cols=194 Identities=30% Similarity=0.444 Sum_probs=160.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1426)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999987 9999999988754322 357899999874 4678
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999987643221100 001123567788999987666544
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++. . +++|+.++|+.+++..++|+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-E-GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998865 3 45566678888899999999999999
Q ss_pred Ce
Q 000556 401 GQ 402 (1426)
Q Consensus 401 G~ 402 (1426)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=312.47 Aligned_cols=206 Identities=28% Similarity=0.347 Sum_probs=172.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.+... ++.++|++|++..++.+|+
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999998765332 4579999999988889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.++....+... ......++.+++.+||++..++.+ ..
T Consensus 90 ~~nl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (232)
T cd03300 90 FENIAFGLRLKKLPK----------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQ 130 (232)
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999988654322100 001123567889999987776554 47
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++...+.|+++ ++|...++.+.+|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii-~sh~~~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVF-VTHDQEEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEE-EeCCHHHHHHhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999886533445544 67777888999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=320.35 Aligned_cols=205 Identities=25% Similarity=0.335 Sum_probs=168.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC--CC---ccceEEEecCCCC-CC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--FV---PERTAAYISQHDN-HI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~--~~---~~~~~~yv~Q~d~-~~ 238 (1426)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.++|++|++. .+
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999988 9999999998742 11 1356999999864 34
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
...|+.||+.+.....+... .+....++.+++.+||++..++.+
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 134 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPI-- 134 (271)
T ss_pred ccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCc--
Confidence 55689999987643221100 001123567888999987776554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. .+ ++|+.++|+..++.+++|++++|
T Consensus 135 ---~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g-~tii~vtH~~~~~~~~~d~i~~l 209 (271)
T PRK13638 135 ---QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QG-NHVIISSHDIDLIYEISDAVYVL 209 (271)
T ss_pred ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 46999999999999999999999999999999999999999999999764 34 45555788888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=349.45 Aligned_cols=211 Identities=21% Similarity=0.315 Sum_probs=181.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ ++.+|+|+||++++||++||+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 488999998873 24699999999999999999999999999999999998653 489999999876
Q ss_pred Cccc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
.... .++.+||++|++.+++.+||+|++.+... . ....++.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~--~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP--K-----RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc--c-----chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 4321 12458999999999999999999987531 1 1233456889999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.||++++|++ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999986 57788999999986 789999
Q ss_pred cCCC
Q 000556 1064 GPLG 1067 (1426)
Q Consensus 1064 G~~~ 1067 (1426)
|+..
T Consensus 222 g~~~ 225 (510)
T PRK15439 222 GKTA 225 (510)
T ss_pred cChH
Confidence 8864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=319.69 Aligned_cols=215 Identities=21% Similarity=0.227 Sum_probs=173.9
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1426)
.+.++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 489999998774 2358999999999999999999999999999999999754 1 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK----PLIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~vg~ 975 (1426)
.+... ...++.++|++|++.+++ .|++||+.+....+. ..+.+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 87632 124567999999988877 499999988653321 112222344567778777553 223332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 468999999999999999999999999999999999999999999999865 799999999986 5778899999998
Q ss_pred cCcEEEEEcCC
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gg~~v~~G~~ 1066 (1426)
+ |+++..|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 789988874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=318.97 Aligned_cols=213 Identities=22% Similarity=0.279 Sum_probs=174.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 904 (1426)
.+.++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 588999998773 24699999999999999999999999999999999997542 13579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ...++.++|++|++.+++. ||.||+.+....+. ... ..++.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 87532 2345679999999888775 99999987654331 122 23456889999999853 33333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEE-EE
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF-LM 1054 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~-ll 1054 (1426)
+..||||||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|+++ +|
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 468999999999999999999999999999999999999999999999976 489999999986 5778899975 56
Q ss_pred ecCcEEEEEcCC
Q 000556 1055 KRGGQEIYVGPL 1066 (1426)
Q Consensus 1055 ~~gg~~v~~G~~ 1066 (1426)
++ |+++..|+.
T Consensus 254 ~~-G~i~~~g~~ 264 (285)
T PRK14254 254 TG-GELVEFDDT 264 (285)
T ss_pred eC-CEEEEeCCH
Confidence 64 789888874
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=313.07 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=171.2
Q ss_pred EeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHH
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRE 245 (1426)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 245 (1426)
+|+|+|++|+|||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999988 9999999998765332 457999999998999999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 000556 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1426)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1426)
|+.++....+... .+....+..+++.+||.+..++.+ +.||
T Consensus 91 ~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 131 (235)
T cd03299 91 NIAYGLKKRKVDK----------------------------------KEIERKVLEIAEMLGIDHLLNRKP-----ETLS 131 (235)
T ss_pred HHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9988643221100 001123456788999987777655 4699
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000556 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1426)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~ 405 (1426)
||||||++||+|++.+|++++|||||+|||+.++..+.+.|++++...+.| ++.++|..+++.+.+|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~t-ili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVT-VLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533444 5556777788999999999999999999
Q ss_pred ecChhhHH
Q 000556 406 QGPRELVL 413 (1426)
Q Consensus 406 ~G~~~~~~ 413 (1426)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99987764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=318.57 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=169.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC----------------CccceE
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF----------------VPERTA 228 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~----------------~~~~~~ 228 (1426)
+++|+|+|+.|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 45999999999999999999999999999999999999887 99999999876421 113579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC
Q 000556 229 AYISQHDNHIGEMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG 307 (1426)
Q Consensus 229 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 307 (1426)
+|++|++.+++.+||+||+.++.. ..+.. ..+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------------------------------KQEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------------------------------HHHHHHHHHHHHHHcC
Confidence 999999999999999999987532 11100 0011234567889999
Q ss_pred Ccccc-cccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCch
Q 000556 308 LEVCA-DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386 (1426)
Q Consensus 308 L~~~~-dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~ 386 (1426)
|.+.. +. .++.||||||||++||+||+.+|++++|||||+|||+.+...+.+.|++++. . +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~-g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-E-GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHH
Confidence 97643 43 3457999999999999999999999999999999999999999999998864 3 455555788888
Q ss_pred hHHhhcCeEEEecCCeEEEecChhhHH
Q 000556 387 ETYDLFDDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 387 ~~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1426)
++.+++|+|++|++|++++.|+.+++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 888999999999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=318.49 Aligned_cols=224 Identities=25% Similarity=0.337 Sum_probs=179.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+.... ..+. ..++.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~~-~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSGK-HQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---cccc-cCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 67888888774100 0000 013569999999999999999999999999999999999765 35899999998754
Q ss_pred cc------cccceEEEeccCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000556 909 QE------TFARISGYCEQND--IHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~~------~~~~~~gyv~q~~--~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 979 (1426)
.. ..++.++|++|++ .+.+..|+.|++.+...... ..........++++++.+++. +..+.. ..
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 31 2356799999997 35677899999876432111 123344455789999999996 455554 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
.||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|++ |
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-G 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-C
Confidence 79999999999999999999999999999999999999999999998765 899999999986 57788999999985 7
Q ss_pred EEEEEcCCC
Q 000556 1059 QEIYVGPLG 1067 (1426)
Q Consensus 1059 ~~v~~G~~~ 1067 (1426)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=316.64 Aligned_cols=213 Identities=23% Similarity=0.300 Sum_probs=169.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC---ccceEEEecCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV---PERTAAYISQHDNHIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 239 (1426)
..+|+|+|++|++||+++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35899999999999999999999999999999999998741 123899999999875432 2357999999988889
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+||+||+.++.+..+.... ..+....++++++.+||.+..+... +.
T Consensus 96 ~~tv~enl~~~~~~~~~~~~--------------------------------~~~~~~~~~~~l~~~~l~~~~~~~~-~~ 142 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVKS--------------------------------KKELQERVRWALEKAQLWDEVKDRL-DA 142 (250)
T ss_pred CCcHHHHHHHHHHhccccCC--------------------------------HHHHHHHHHHHHHHcCCCcchhhhh-cC
Confidence 99999999986543211000 0011233567788899864211111 23
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
.+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++. .+ ++++.++|+..++.+.+|+|++|+
T Consensus 143 ~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l~ 219 (250)
T PRK14247 143 PAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK--KD-MTIVLVTHFPQQAARISDYVAFLY 219 (250)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CEEEEEeCCHHHHHHhcCEEEEEE
Confidence 455799999999999999999999999999999999999999999999874 24 455567788888889999999999
Q ss_pred CCeEEEecChhhHH
Q 000556 400 DGQIVYQGPRELVL 413 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~ 413 (1426)
+|++++.|+.+++.
T Consensus 220 ~G~i~~~g~~~~~~ 233 (250)
T PRK14247 220 KGQIVEWGPTREVF 233 (250)
T ss_pred CCeEEEECCHHHHH
Confidence 99999999988764
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=318.63 Aligned_cols=214 Identities=19% Similarity=0.237 Sum_probs=174.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
-+.++|+++.+. ++.+|+|+|+++++||+++|+|+||||||||+++|+|..... +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 588999998873 246999999999999999999999999999999999975321 2479999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGL 975 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~ 975 (1426)
.++.. ..+++.++|++|+..+++. ||.||+.+....+. .. ...++.++++++.+++.. ..+..
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 158 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK--- 158 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC---
Confidence 87632 2345679999999887764 99999987643321 11 122344677888888743 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 159 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 234 (274)
T PRK14265 159 --GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFN 234 (274)
T ss_pred --cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence 467999999999999999999999999999999999999999999999965 799999999986 5888999999997
Q ss_pred --------cCcEEEEEcCC
Q 000556 1056 --------RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 --------~gg~~v~~G~~ 1066 (1426)
+.|+++..|+.
T Consensus 235 ~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 235 TEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=358.95 Aligned_cols=210 Identities=21% Similarity=0.337 Sum_probs=179.6
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++++|++|.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46999999999851 23599999999999999999999999999999999998774 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 976 (1426)
+++ ..+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 754 3567889999999999885 9999998752 122 23478889998877644 5556653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|+|+++|+++ ....+|+|++|++
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~ 549 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHR 549 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999998864 699999999984 5678999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 550 -G~i~~~G~~ 558 (592)
T PRK10790 550 -GQAVEQGTH 558 (592)
T ss_pred -CEEEEEcCH
Confidence 899999885
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=311.79 Aligned_cols=200 Identities=26% Similarity=0.398 Sum_probs=160.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCC--CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHI--GEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 242 (1426)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999987 999999998764 2345799999987653 3489
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+||+.++...... .+.. . ..+....++.+++.+||++..++.+ .
T Consensus 87 v~e~l~~~~~~~~~--~~~~----------------~------------~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 131 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFRR----------------L------------SKADKAKVDEALERVGLSELADRQI-----G 131 (213)
T ss_pred HHHHHHhccccccc--cccC----------------C------------CHHHHHHHHHHHHHcCCHHHHhCCc-----c
Confidence 99999885431100 0000 0 0001224567889999987666554 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ . +++|+.++|+.+++.+++|+|++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-E-GMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 6999999999999999999999999999999999999999999999865 3 445666788888999999999999886
Q ss_pred EEEec
Q 000556 403 IVYQG 407 (1426)
Q Consensus 403 iv~~G 407 (1426)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=359.63 Aligned_cols=213 Identities=22% Similarity=0.336 Sum_probs=179.6
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++++|++|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 46999999999852 124699999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
.++ ..+++.++||+|++.+++ -|++||+.++. +.+.+ ++.++++++.+++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 654 346788999999999886 69999997641 21222 2347778888776543 46777764
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+ .+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.||+|++|++
T Consensus 478 g-~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 G-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred C-CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 3 6899999999999999999999999999999999999999999999875 4799999999985 5788999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 799998874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=319.91 Aligned_cols=210 Identities=24% Similarity=0.354 Sum_probs=170.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999887 9999999987654322 35699999998888999
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||.||+.++..... .. . +. . . ......++.+++.+||++..++.++
T Consensus 101 tv~e~l~~~~~~~~-~~-~-------------~~-~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 146 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-L-------------GR-F-G-------------AADREKVEEAISLVGLKPLAHRLVD---- 146 (265)
T ss_pred cHHHHHHhCccccc-cc-c-------------cC-C-C-------------HHHHHHHHHHHHHcCCHHHhcCCcc----
Confidence 99999987532100 00 0 00 0 0 0012245678899999876666554
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++..+ ++|+.++|+.+++.+.+|+|++|++|
T Consensus 147 -~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~-~tiii~sH~~~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 147 -SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERG-LTVIAVLHDINMAARYCDYLVALRGG 224 (265)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 6999999999999999999999999999999999999999999999865334 44555778888999999999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999987653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=322.50 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=174.4
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++. +...+|+|||+.|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 4789999988742 12358999999999999999999999999999999999864 369999999876
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL------PGV 978 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~------~~~ 978 (1426)
.. ...++.++|++|++.+++ .|++||+.... ... ++.++++++.+||.+..+..++. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~-~tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFS-GTFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccch-hhHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 43 234667999999999887 49999995321 111 23478889999998776665431 234
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||+|||||++|||||+.+|+||+|||||+|||+.+...+++.|+++. .++|||+++|++. .+ ..+|++++|++ |
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i-~~~dri~vl~~-G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AM-LECQRFLVIEE-N 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HH-HhCCEEEEecC-C
Confidence 6799999999999999999999999999999999999999999999875 4899999999985 34 45999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
+++++|+.
T Consensus 213 ~i~~~g~~ 220 (275)
T cd03289 213 KVRQYDSI 220 (275)
T ss_pred eEeecCCH
Confidence 99999986
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=314.84 Aligned_cols=220 Identities=24% Similarity=0.296 Sum_probs=175.7
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++ .+.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 378999988763 2359999999999999999999999999999999999621124589999999876
Q ss_pred Ccc---cccc-eEEEeccCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000556 908 KQE---TFAR-ISGYCEQNDIHSPFVTVYESLLYSAWLRLP----PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGV 978 (1426)
Q Consensus 908 ~~~---~~~~-~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~ 978 (1426)
... ..++ .++|++|++.+++.+|+.+++.+....... .+.......+++.++++.+++. +..+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 432 1222 478999999999999999998765432110 0111222345678899999997 35555432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhh-cceEEEEecC
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRG 1057 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~-fD~v~ll~~g 1057 (1426)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~~- 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQN- 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEeC-
Confidence 259999999999999999999999999999999999999999999999877999999999986 34454 799999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 799999875
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=321.00 Aligned_cols=208 Identities=24% Similarity=0.327 Sum_probs=168.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC-CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN-HIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 240 (1426)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 358999999999999999999999999999999999998862123999999998764322 357899999974 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
.||+||+.|..+..+.. ..+...+++.+++.+||++..++.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~~L~~~~~~~~---- 141 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------------------------------RPEMIKIVRDVLADVGMLDYIDSEP---- 141 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------------------------------HHHHHHHHHHHHHHCCChhHhcCCc----
Confidence 99999998864322110 0011234567889999987666544
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
+.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|..+++ ..+|++++|++
T Consensus 142 -~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~t-vli~tH~~~~~-~~~d~i~~l~~ 218 (282)
T PRK13640 142 -ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLT-VISITHDIDEA-NMADQVLVLDD 218 (282)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEecCHHHH-HhCCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999986533444 55566776776 57999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+++++.
T Consensus 219 G~i~~~g~~~~~~ 231 (282)
T PRK13640 219 GKLLAQGSPVEIF 231 (282)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998775
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=312.59 Aligned_cols=203 Identities=22% Similarity=0.370 Sum_probs=167.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-+.++|+++.+. ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 478999998763 2469999999999999999999999999999999999765 3489999999875
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~~LSg 983 (1426)
.. ..+++.++|++|++.+++ .|++||+.+....+.. .. .++.++++++.+++. ...++. +..||+
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 43 124567899999988877 5999999875443211 11 124578899999996 355555 357999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++ |.|||+++|++. ++ +.+|++++|++.+
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHA 214 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEeccc
Confidence 9999999999999999999999999999999999999999998764 899999999986 35 5699999996433
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=347.92 Aligned_cols=216 Identities=28% Similarity=0.328 Sum_probs=180.2
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 378899988773 24699999999999999999999999999999999998653 479999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000556 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLST 983 (1426)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSg 983 (1426)
... .+++.+||++|++.+++.+||.||+.+....+.....+..+.++.++++++.++|.+..+..+ ..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCH
Confidence 421 234578999999988999999999987532111111223344567889999999987666653 57999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEE
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063 (1426)
Q Consensus 984 GqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~ 1063 (1426)
|||||++||++|+.+|++|+|||||+|||+.+...+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999986 687766
Q ss_pred cC
Q 000556 1064 GP 1065 (1426)
Q Consensus 1064 G~ 1065 (1426)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 54
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=315.17 Aligned_cols=213 Identities=25% Similarity=0.319 Sum_probs=168.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCCCc----cceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVP----ERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 238 (1426)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.+ +|+ +|+|.++|.++..... +..++|++|++..+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 566 9999999988765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc-ccccccc
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADTMVG 317 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vG 317 (1426)
+.+|++|++.+......... .+. ..+ ..+....++.+++.+||++ ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~----------~~~------~~~-----------~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSAR----------GEE------PLD-----------LLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhccc----------ccc------ccc-----------HHHHHHHHHHHHHHcCCchhhcccccc
Confidence 99999999988643211000 000 000 0011234677899999973 5554443
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhh-cCeEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL-FDDII 396 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~-fD~vi 396 (1426)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ .+ ++|+.++|+.+++... +|+|+
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~-~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PD-RSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CC-cEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999854 34 4555577777888887 79999
Q ss_pred EecCCeEEEecChhhHH
Q 000556 397 LLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=355.94 Aligned_cols=212 Identities=28% Similarity=0.425 Sum_probs=179.9
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+|++|.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 123599999999999999999999999999999999998763 48999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI------QSLVGLPG 977 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~vg~~~ 977 (1426)
+.+ ..+++.++||+|++.+++ .|++||+.++. + +. .++.++++++.+++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 654 346778999999998886 59999997742 1 12 234578899999997654 5666654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 978 ~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +|+|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 46899999999999999999999999999999999999999999999885 4899999999986 3567999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 799998874
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=317.51 Aligned_cols=205 Identities=21% Similarity=0.288 Sum_probs=168.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCC-CCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDN-HIGE 240 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 240 (1426)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999987 999999998875432 2457999999974 6778
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
.||.||+.++....+.. + .+....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP-R---------------------------------EEMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC-H---------------------------------HHHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998764322110 0 001124577888999987666544
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
..||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.| |+.++|..+++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~t-iil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLT-VLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHH-hCCEEEEEEC
Confidence 5799999999999999999999999999999999999999999999886533444 555777777775 6999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=298.97 Aligned_cols=168 Identities=28% Similarity=0.415 Sum_probs=148.6
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ ...+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEccc
Confidence 5677777653 23599999999999999999999999999999999998653 48999999987643
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
..+++.++|++|++.+++..|+.|++. |||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~q 102 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQ 102 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHH
Confidence 234567999999998888899999873 8999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
|++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||+++|++. ++.+.+|++++|++|
T Consensus 103 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 103 RLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999877999999999986 577789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=318.64 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=169.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCC--CCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN--HIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 239 (1426)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999988753221 246999999874 567
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-ccccccccC
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTMVGD 318 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vG~ 318 (1426)
.+||.|++.+..+....... .+....++.+++.+||. +..++.
T Consensus 103 ~~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 146 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLEP---------------------------------EQREKQIIETLRQVGLLPDHASYY--- 146 (267)
T ss_pred chhHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCChHHHhcC---
Confidence 88999999876542210000 01122456789999994 455544
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+.. +++|+.++|+.+++.+++|+|++|
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 147 --PHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred --chhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 34799999999999999999999999999999999999999999999986533 445555788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=318.90 Aligned_cols=209 Identities=23% Similarity=0.374 Sum_probs=171.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 45999999999999999999999999999999999999987 9999999988754332 34689999999888899
Q ss_pred CHHHHHHHhhhh-cCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 242 TVRETLAFSARC-QGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 242 TV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
||+||+.++..- ...... . . ......++.+++.+||++..++.
T Consensus 97 tv~~~~~~~~~~~~~~~~~----------------~--~-------------~~~~~~~~~~l~~~~l~~~~~~~----- 140 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTR----------------W--R-------------KEDEEAVTKAMQATGITHLADQS----- 140 (265)
T ss_pred cHHHHHHhCcccccccccC----------------C--C-------------HHHHHHHHHHHHHcCCHHHhcCC-----
Confidence 999999875310 000000 0 0 00112456788999998766654
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
++.||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|++
T Consensus 141 ~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~ 219 (265)
T PRK10253 141 VDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALRE 219 (265)
T ss_pred cccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999986533 44555577888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+.+++.
T Consensus 220 G~i~~~g~~~~~~ 232 (265)
T PRK10253 220 GKIVAQGAPKEIV 232 (265)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=315.33 Aligned_cols=215 Identities=26% Similarity=0.292 Sum_probs=173.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP- 906 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~- 906 (1426)
.+.++|+++.++ ...+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSG 67 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEecccc
Confidence 377889888763 23589999999999999999999999999999999998663 47999999976
Q ss_pred ----CCcc-------cccceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc-ccccc
Q 000556 907 ----KKQE-------TFARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSL 972 (1426)
Q Consensus 907 ----~~~~-------~~~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 972 (1426)
+... ..++.++|++|++. ..+.+|+.|++.+..... .. .......+.++++++.+++.+ ..++.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~ 145 (253)
T TIGR02323 68 AELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL 145 (253)
T ss_pred cccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC
Confidence 3221 11346899999974 345679999986542211 11 111233456889999999963 55555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceE
Q 000556 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 973 vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v 1051 (1426)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|++
T Consensus 146 -----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~ 219 (253)
T TIGR02323 146 -----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRL 219 (253)
T ss_pred -----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998764 899999999986 577789999
Q ss_pred EEEecCcEEEEEcCC
Q 000556 1052 FLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1052 ~ll~~gg~~v~~G~~ 1066 (1426)
++|++ |++++.|+.
T Consensus 220 ~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 220 LVMQQ-GRVVESGLT 233 (253)
T ss_pred EEEEC-CEEEEECCH
Confidence 99985 789988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-33 Score=312.02 Aligned_cols=201 Identities=23% Similarity=0.381 Sum_probs=168.0
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCHHHHHH
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTVRETLA 248 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 248 (1426)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||+||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999987 9999999998764332 357999999998999999999998
Q ss_pred HhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCChhH
Q 000556 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1426)
Q Consensus 249 f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LSGGq 328 (1426)
++... ..... ......++.+++.+||++..++.+ +.|||||
T Consensus 94 ~~~~~-~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLKLN---------------------------------AAQREKLHAIARQMGIEDLLARLP-----GQLSGGQ 134 (232)
T ss_pred ccccc-ccCCC---------------------------------HHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHH
Confidence 75321 00000 001224577899999987777655 4699999
Q ss_pred hhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEEecC
Q 000556 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1426)
Q Consensus 329 rqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~~G~ 408 (1426)
|||++||++++.+|++++|||||+|||..++..+.+.|+++.+..+. +|+.++|+..++.+++|+|++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~-tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQL-TLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988653344 45557788888999999999999999999999
Q ss_pred hhhHH
Q 000556 409 RELVL 413 (1426)
Q Consensus 409 ~~~~~ 413 (1426)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 88764
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-33 Score=317.11 Aligned_cols=218 Identities=19% Similarity=0.250 Sum_probs=174.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G-YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g 904 (1426)
.+.++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 478999988773 24699999999999999999999999999999999996431 1 2579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ...++.++|++|++.+++ .|+.||+.+....+. .. ...++.++++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 87531 234567899999988877 499999987653321 11 1233456778888887532111111 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec---
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR--- 1056 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~--- 1056 (1426)
.||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999976 589999999986 68899999999982
Q ss_pred -----CcEEEEEcCC
Q 000556 1057 -----GGQEIYVGPL 1066 (1426)
Q Consensus 1057 -----gg~~v~~G~~ 1066 (1426)
.|+++..|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 4799998875
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-33 Score=323.51 Aligned_cols=205 Identities=20% Similarity=0.293 Sum_probs=166.1
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCC----C----CccceEEEecCCCC-
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE----F----VPERTAAYISQHDN- 236 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~----~----~~~~~~~yv~Q~d~- 236 (1426)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5899999999999999999999999999999999999987 9999999987642 1 12357999999863
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc-cccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE-VCADTM 315 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 315 (1426)
.+...||+||+.|+....+... .+....++.+++.++|+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGENK----------------------------------QEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhHhcCC
Confidence 2334699999988643221100 00112356678889994 455544
Q ss_pred ccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeE
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~v 395 (1426)
++.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+.+++.+++|+|
T Consensus 148 -----~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 -----PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY-KKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred -----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEE
Confidence 45799999999999999999999999999999999999999999999886533 445555788888899999999
Q ss_pred EEecCCeEEEecChhhHH
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~iv~~G~~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=357.33 Aligned_cols=209 Identities=24% Similarity=0.405 Sum_probs=166.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
.++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 45899999999999999999999999999999999999998 9999999999877654 467999999987775 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|++|||.++..-. ...+.+.+.++ ..+ .++.++ .|++..||.+|+.+
T Consensus 432 Ti~~Ni~~~~~~~---~~~~~i~~al~---------------------~~~------l~~~i~--~lp~Gldt~ig~~g- 478 (582)
T PRK11176 432 TIANNIAYARTEQ---YSREQIEEAAR---------------------MAY------AMDFIN--KMDNGLDTVIGENG- 478 (582)
T ss_pred hHHHHHhcCCCCC---CCHHHHHHHHH---------------------HhC------cHHHHH--hcccccCceeCCCC-
Confidence 9999998853100 00011111110 000 111222 36677899999865
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. .++|+|+ ++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~-VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLV-IAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEE-Eecch-HHHHhCCEEEEEECC
Confidence 4799999999999999999999999999999999999999999998863 3456555 45544 567789999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=314.11 Aligned_cols=216 Identities=23% Similarity=0.312 Sum_probs=175.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC--c--eEEEEEEEc
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG--G--YITGNITIS 903 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~--~--~~~G~i~i~ 903 (1426)
.+.++++++++. ++.+|+||||++++||+++|+|+||||||||+++|+|...+ | .+.|++.++
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 378899888763 34699999999999999999999999999999999997542 2 123666666
Q ss_pred CccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000556 904 GYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSLVGLP 976 (1426)
Q Consensus 904 g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~vg~~ 976 (1426)
|.+... ...++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 665432 2345678999999999999999999988643321 1122334456889999999964 23332
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
+..||+|||||++|||+|+.+|++|+|||||+|||..+...+.+.|+++.+ ++|||+++|++. .+.+.+|++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 467999999999999999999999999999999999999999999999864 699999999986 57789999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 228 -g~i~~~g~~ 236 (257)
T PRK14246 228 -GELVEWGSS 236 (257)
T ss_pred -CEEEEECCH
Confidence 799888875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=318.62 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=171.7
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC--------ccceEEEecCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV--------PERTAAYISQHDN 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~--------~~~~~~yv~Q~d~ 236 (1426)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 45899999999999999999999999999999999999875223699999998774321 1346899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
+++.+||+||+.+...... . ..... ... . ..+.+..++.+++.+||++..|..+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-------~~~~~--~~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-------FWRTC--FSW-F--------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-------chhhh--ccc-c--------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999987642100 0 00000 000 0 0011234677899999987777654
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
..|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++.. +++||.++|+.+++.+++|+|+
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4699999999999999999999999999999999999999999999986533 4555657888888999999999
Q ss_pred EecCCeEEEecChhhH
Q 000556 397 LLSDGQIVYQGPRELV 412 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~ 412 (1426)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=355.29 Aligned_cols=206 Identities=21% Similarity=0.277 Sum_probs=166.5
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1426)
++|+|+|++++|||.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 4899999999999999999999999999999999999998 9999999999887654 4789999999987775 9
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
++|||.++.. . + .+.+.+.++. . -.++.++ .|++..||.+|+.+ .
T Consensus 431 i~~NI~~~~~---~-~-d~~i~~a~~~---~------------------------gl~~~i~--~lp~Gldt~i~e~g-~ 475 (592)
T PRK10790 431 FLANVTLGRD---I-S-EEQVWQALET---V------------------------QLAELAR--SLPDGLYTPLGEQG-N 475 (592)
T ss_pred HHHHHHhCCC---C-C-HHHHHHHHHH---c------------------------CcHHHHH--hccccccccccCCC-C
Confidence 9999998631 1 0 1111111110 0 0111222 25667899999865 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.||||||||++|||||+++|++++||||||+||+.+...|.+.|+++. .++|+|+..|++ +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~--~~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVR--EHTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999864 346666644443 5667799999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=307.62 Aligned_cols=197 Identities=28% Similarity=0.373 Sum_probs=164.7
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|++..++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (207)
T PRK13539 3 LEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDID 67 (207)
T ss_pred EEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCc
Confidence 67788887663 2469999999999999999999999999999999999865 34799999998753
Q ss_pred cccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHH
Q 000556 909 QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988 (1426)
Q Consensus 909 ~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqR 988 (1426)
....++.++|++|++.+++..|+.|++.+....+. .. ++.++++++.+||.+..+..+ +.||||||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 135 (207)
T PRK13539 68 DPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRR 135 (207)
T ss_pred chhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHH
Confidence 22245678999999888888999999987543321 11 234789999999987666653 5799999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 989 l~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
++||++|+.+|++|+|||||+|||+.+...+++.|++++++|+|||+++|++. ++. . |+++.+.
T Consensus 136 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~-~-~~~~~~~ 199 (207)
T PRK13539 136 VALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLP-G-ARELDLG 199 (207)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhc-c-CcEEeec
Confidence 99999999999999999999999999999999999998878999999999986 343 3 8887774
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=304.12 Aligned_cols=178 Identities=26% Similarity=0.327 Sum_probs=150.6
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc-----ccccceEEEeccCCC-CCC
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ-----ETFARISGYCEQNDI-HSP 927 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~q~~~-~~~ 927 (1426)
+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4699999999999999999999999999999999998663 48999999987531 123567899999973 233
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCC
Q 000556 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1007 (1426)
Q Consensus 928 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEP 1007 (1426)
..||+||+.+..... ..+.+...+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999998865432 1233444556889999999988777764 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Q 000556 1008 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPG 1041 (1426)
Q Consensus 1008 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~ 1041 (1426)
|+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-33 Score=314.25 Aligned_cols=219 Identities=21% Similarity=0.286 Sum_probs=176.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT--G-GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g 904 (1426)
.+.++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|... + .+.+|+|.+||
T Consensus 3 ~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (250)
T PRK14266 3 RIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDG 69 (250)
T ss_pred EEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECC
Confidence 367888887763 2469999999999999999999999999999999999643 1 12579999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
.++.. ...++.++|++|++.+++. |+.||+.+..... ...+.+...+++.++++.+++.+....... ....
T Consensus 70 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 145 (250)
T PRK14266 70 VDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKLD-KSAL 145 (250)
T ss_pred EEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcc
Confidence 87642 1235679999999988875 9999998764322 111223345668889999998543222221 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++++ |+|||+++|++. ++.+.+|++++|++ |+
T Consensus 146 ~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~ 222 (250)
T PRK14266 146 GLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-Ce
Confidence 8999999999999999999999999999999999999999999999864 899999999986 68889999999985 79
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 223 i~~~g~~ 229 (250)
T PRK14266 223 IIESGLT 229 (250)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=315.82 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=167.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCC--CCC---ccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMG--EFV---PERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~--~~~---~~~~~~yv~Q~d~~ 237 (1426)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++. ... .++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35899999999999999999999999999999999998762 123899999999875 221 23579999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.++....+..... .+....++.+++.+||........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVKSK--------------------------------KELDERVEWALKKAALWDEVKDRL- 143 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccCCH--------------------------------HHHHHHHHHHHHHcCCccchhhhh-
Confidence 99999999998865322110000 001123456778888743111111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+.+++.+++|+|++
T Consensus 144 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~ 220 (253)
T PRK14267 144 NDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAF 220 (253)
T ss_pred ccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEE
Confidence 234567999999999999999999999999999999999999999999998753 3 4555577888889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 221 LYLGKLIEVGPTRKVF 236 (253)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=311.47 Aligned_cols=206 Identities=27% Similarity=0.408 Sum_probs=171.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-cceEEEecCCCCCCCCCCH
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 243 (1426)
+++|+|+|+++.+||+++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++..++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 46999999999999999999999999999999999999887 9999999988764333 3579999999988889999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.+..+..+... ......++.+++.+++....++.+ +.
T Consensus 90 ~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHPK----------------------------------AKIKARVEELLELVQLEGLGDRYP-----NQ 130 (237)
T ss_pred HHHHHhHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 999987654321100 001123467788899976666544 46
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeE
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~i 403 (1426)
||||||||++||++++.+|++++|||||+|||..+...+.+.|++++...+.|+|+ ++|...++.+++|+|++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli-~sH~~~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEE-EeCCHHHHHhhcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999876532445444 66777888999999999999999
Q ss_pred EEecChhhHH
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 v~~G~~~~~~ 413 (1426)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988764
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.22 Aligned_cols=206 Identities=24% Similarity=0.282 Sum_probs=165.6
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC-CceeEEEEcCccCCCCCc-cceEEEecCCCC--CCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYNGHDMGEFVP-ERTAAYISQHDN--HIGEM 241 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~-~~~G~V~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 241 (1426)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|.. ..+|+|.++|.++..... ++.++||+|++. +.+.+
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 48999999999999999999999999999999999998710 028999999988753322 256999999974 44667
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc---cccccccC
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV---CADTMVGD 318 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vG~ 318 (1426)
|+.+++.+.+...+.. .....++.+++.+||.+ ..++
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKL---- 136 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhc----
Confidence 9999887643221100 00123566788999975 2333
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
.+..|||||||||+||+||+.+|++|+|||||+|||+.+...+.+.|+++++.. +++|+.++|+.+++.+.+|++++|
T Consensus 137 -~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~-g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 137 -YPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR-ALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred -CCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhCCEEEEE
Confidence 345799999999999999999999999999999999999999999999986533 445555778888888999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=328.71 Aligned_cols=211 Identities=24% Similarity=0.371 Sum_probs=179.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++||+++|+.+ ..++|+|+|+++++||.+||+|+||||||||+++|+|-.. +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999999743 3469999999999999999999999999999999999765 4589999999886
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCC
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPG 977 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~ 977 (1426)
.. ...++.+++++|...++. -|+++||.++. | +.+ ++.++++++.+||++..... +|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~-~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN----P-DAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC----C-CCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 54 235667899999887765 69999997642 2 222 34588999999998866544 554 4
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 978 ~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
.+.||||||||++|||+|++|.++++|||||.|||+.|+++|++.|.+.++ |+|+|++||+.. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~~- 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDN- 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEEC-
Confidence 578999999999999999999999999999999999999999999998764 899999999976 4688999999985
Q ss_pred cEEEEEcCC
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 g~~v~~G~~ 1066 (1426)
|+++..|..
T Consensus 548 Gkiie~G~~ 556 (573)
T COG4987 548 GKIIEEGTH 556 (573)
T ss_pred CeeeecCCH
Confidence 899999875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=307.52 Aligned_cols=202 Identities=25% Similarity=0.297 Sum_probs=182.9
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc-------cccceEEEeccCCCCC
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-------TFARISGYCEQNDIHS 926 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~q~~~~~ 926 (1426)
..-++|+|++++.||+..|||-||||||||+++|.+... +..|+|.++|.++... ..++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 456899999999999999999999999999999999876 4589999999875431 1346789999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeC
Q 000556 927 PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1426)
Q Consensus 927 ~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDE 1006 (1426)
|+.||.||..|+..++ .+++++++++..++|+.+||....+..+ .+||||+||||.|||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 5678899999999999999999999884 6899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 1007 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1007 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
|.|.|||--+..+++.|.++.++ ++|||++|||.. |.+..-|||.+|+ +|++|-.|...
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999998765 899999999997 7889999999998 58999999863
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=366.77 Aligned_cols=211 Identities=24% Similarity=0.369 Sum_probs=178.0
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++++||+|+|+. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 46999999999851 23599999999999999999999999999999999998764 58999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+.+ ..+++.+|||+|++.+++ -|++||+.++.. .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~l~~~----~~~~----~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFS-GSILENLLLGAK----ENVS----QDEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehh-HHHHHHHhccCC----CCCC----HHHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 654 456788999999999886 499999976421 1222 2346778887777653 36667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4689999999999999999999999999999999999999999999985 4899999999986 5688999999986
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 799999884
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=346.11 Aligned_cols=206 Identities=24% Similarity=0.314 Sum_probs=173.6
Q ss_pred eEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCCCCCCCC
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQNDIHSPFV 929 (1426)
Q Consensus 854 ~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~~~~~~l 929 (1426)
+.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++..++.+
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 88 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQR 88 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccCC
Confidence 4699999999999999999999999999999999998653 489999999876421 2345689999999888899
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCC
Q 000556 930 TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1009 (1426)
Q Consensus 930 Tv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTs 1009 (1426)
||+|++.+..........+.+...+.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 89 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~ 163 (491)
T PRK10982 89 SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTS 163 (491)
T ss_pred CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 99999987532111111123334456889999999987777764 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCCc
Q 000556 1010 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGR 1068 (1426)
Q Consensus 1010 gLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~~ 1068 (1426)
|||+.+...+.+.|+++++.|+|||+++|++. ++.+.||++++|++ |+++..|+...
T Consensus 164 ~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 164 SLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 99999999999999999888999999999986 57788999999986 79999888643
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=314.02 Aligned_cols=211 Identities=20% Similarity=0.288 Sum_probs=167.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC-----ccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1426)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|.++.... .++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35899999999999999999999999999999999998641 123899999999875321 14579999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++ .||+||+.++.+..+.... .+....++.+++.+||.+..+...
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKDK---------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 77 6999999886532211000 001123556788888864322222
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+.+++.++||+|++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK--KN-YTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh--cC-CEEEEEecCHHHHHHhcCEEEE
Confidence 34566899999999999999999999999999999999999999999999874 24 4555577888889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999998764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=314.31 Aligned_cols=197 Identities=25% Similarity=0.372 Sum_probs=168.1
Q ss_pred EeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCCCCCCCCHH
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTVY 932 (1426)
Q Consensus 856 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~ 932 (1426)
+|+||||++++||+++|+|+||||||||+++|+|... .+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999764 27999999987643 12345689999998888889999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCeEEEe
Q 000556 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1005 (1426)
Q Consensus 933 e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~-------~p~iLlLD 1005 (1426)
||+.+.... ..+.....+.++++++.++|.+..++.+ ..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 1122333456889999999987777653 5799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1006 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 57889999999985 789998875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=313.75 Aligned_cols=210 Identities=18% Similarity=0.249 Sum_probs=164.7
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC--C---ccceEEEecCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHI 238 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~ 238 (1426)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|.++... . .++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 58999999999999999999999999999999999986 2111389999999887421 1 135799999998777
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+ .||+||+.++......... .+....++++++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLSR---------------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCCH---------------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 7 8999999886532210000 001123566788888742111111 2
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
.....||||||||++||+||+.+|++++|||||+|||..+...+.+.|+++. .+ ++||.++|+..++.+++|+|++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~--~~-~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK--QD-YTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEEEE
Confidence 3345799999999999999999999999999999999999999999999874 24 45556778888888999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=343.62 Aligned_cols=123 Identities=23% Similarity=0.292 Sum_probs=101.0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCeEE
Q 000556 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1003 (1426)
Q Consensus 928 ~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~~~~~LSgGqrqRl~iA~~L~~---~p~iLl 1003 (1426)
.+||.|.+.|...+. .. ....++++.+||... .+.. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467888887765432 11 124578889999753 3444 35799999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe-----cCcEEEEEcCC
Q 000556 1004 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK-----RGGQEIYVGPL 1066 (1426)
Q Consensus 1004 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~-----~gg~~v~~G~~ 1066 (1426)
|||||+|||+.....+++.|+++.++|.|||+++|++. ..+.+|+++.|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999985 346799999994 57899999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=316.66 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=170.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|+...++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999887 9999999987654322 34699999998888889
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||.||+.++..... ..+ ... ..+....++.+++.+||++..++.+
T Consensus 92 tv~~~i~~~~~~~~--~~~----------------~~~------------~~~~~~~~~~~l~~~~l~~~~~~~~----- 136 (255)
T PRK11231 92 TVRELVAYGRSPWL--SLW----------------GRL------------SAEDNARVNQAMEQTRINHLADRRL----- 136 (255)
T ss_pred cHHHHHHhccchhh--hhc----------------cCC------------CHHHHHHHHHHHHHcCCHHHHcCCc-----
Confidence 99999988531000 000 000 0001234567888999987766654
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+.+++.+++|++++|++|
T Consensus 137 ~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~-~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-Q-GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 46999999999999999999999999999999999999999999998764 3 445555778888999999999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999987753
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=304.07 Aligned_cols=194 Identities=24% Similarity=0.275 Sum_probs=161.2
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
.++|+++.++ .+.+|+|+|+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~ 66 (198)
T TIGR01189 2 AARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP--DSGEVRWNGTALAE 66 (198)
T ss_pred EEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CccEEEECCEEccc
Confidence 4667776653 34699999999999999999999999999999999998653 47999999987543
Q ss_pred --ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 910 --ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 910 --~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
..+++.++|++|++.+++.+|+.|++.+....+. . + ++.++++++.+++.+..++.+ ..|||||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 134 (198)
T TIGR01189 67 QRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQR 134 (198)
T ss_pred chHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHH
Confidence 2244678999999888888999999987644321 1 1 235788999999998777764 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEE
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~l 1053 (1426)
|++||++|+.+|++|+|||||+|||+.+...+++.|++++++|.|||+++|++.. -.+++++.
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 9999999999999999999999999999999999999987789999999999852 23466654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=366.81 Aligned_cols=210 Identities=26% Similarity=0.396 Sum_probs=177.5
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++++||+|+|+. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46999999999852 124699999999999999999999999999999999998764 48999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI-------QSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~vg~~ 976 (1426)
+++ ..+++.+|||+|++.++. .|++||+.++. + +.+ ++.++++++..++.+.. |+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~----~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIP----DADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCC----HHHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 654 346888999999998885 69999997631 1 222 23477888888876643 5566654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|+++|+++ ....+|+|++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 468999999999999999999999999999999999999999999986 4899999999985 5677999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 799999984
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=315.59 Aligned_cols=208 Identities=28% Similarity=0.417 Sum_probs=170.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
..+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999987 9999999988765432 34689999998778889
Q ss_pred CHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcc
Q 000556 242 TVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 242 TV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~ 320 (1426)
||+||+.++.. ... .. . .+ ..+....++.+++.+||.+..++.+
T Consensus 91 tv~e~l~~~~~~~~~----------~~------~-~~--------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (256)
T TIGR03873 91 TVRDVVALGRIPHRS----------LW------A-GD--------------SPHDAAVVDRALARTELSHLADRDM---- 135 (256)
T ss_pred CHHHHHHhcchhhhh----------hc------c-CC--------------CHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 99999987531 000 00 0 00 0011224567889999987666554
Q ss_pred cccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecC
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~ 400 (1426)
..||||||||++||+|++.+|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+.+++.+++|+|++|++
T Consensus 136 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (256)
T TIGR03873 136 -STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-T-GVTVVAALHDLNLAASYCDHVVVLDG 212 (256)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-c-CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998753 3 44566678888899999999999999
Q ss_pred CeEEEecChhhHH
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~iv~~G~~~~~~ 413 (1426)
|++++.|+.+++.
T Consensus 213 G~i~~~g~~~~~~ 225 (256)
T TIGR03873 213 GRVVAAGPPREVL 225 (256)
T ss_pred CCEEEecCHHHhh
Confidence 9999999987753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=313.65 Aligned_cols=216 Identities=21% Similarity=0.237 Sum_probs=175.4
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITIS 903 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~ 903 (1426)
..+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3589999998874 236999999999999999999999999999999999976421 258999999
Q ss_pred CccCC----c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcc----ccccc
Q 000556 904 GYPKK----Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP----LIQSL 972 (1426)
Q Consensus 904 g~~~~----~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 972 (1426)
|.+.. . ..+++.++|++|++.+++. |++||+.+...... .......++.++++++.+++.+ ..+..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG--VKRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC--CChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87642 1 1345678999999988885 99999987643221 1111223456788888888753 22333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEE
Q 000556 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELF 1052 (1426)
Q Consensus 973 vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ 1052 (1426)
...||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999875 699999999986 5778999999
Q ss_pred EEecCcEEEEEcCC
Q 000556 1053 LMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1053 ll~~gg~~v~~G~~ 1066 (1426)
+|++ |+++..|+.
T Consensus 232 ~l~~-G~i~~~g~~ 244 (265)
T PRK14252 232 YMYM-GELIEFGAT 244 (265)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 789988875
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=305.94 Aligned_cols=199 Identities=21% Similarity=0.318 Sum_probs=164.9
Q ss_pred EeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-ccceEEEecCCCCCCCCCCHHH
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-PERTAAYISQHDNHIGEMTVRE 245 (1426)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 245 (1426)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 357999999999999999999999999999999999987 999999999875432 2457999999999999999999
Q ss_pred HHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccccCC
Q 000556 246 TLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGIS 325 (1426)
Q Consensus 246 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~LS 325 (1426)
|+.+...... ... .+....++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KLN---------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Ccc---------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9987532100 000 001123567889999987666554 4799
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCeEEE
Q 000556 326 GGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVY 405 (1426)
Q Consensus 326 GGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~iv~ 405 (1426)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+. .+++|+.++|+.+++.+++|++++|++|++++
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999988653 34555557888888889999999999999999
Q ss_pred ecC
Q 000556 406 QGP 408 (1426)
Q Consensus 406 ~G~ 408 (1426)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=364.15 Aligned_cols=212 Identities=26% Similarity=0.432 Sum_probs=179.5
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+|+|+. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 462 ~~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 528 (694)
T TIGR03375 462 GEIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP--TEGSVLLDGVD 528 (694)
T ss_pred ceEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46999999999852 124699999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+++ ..+++.++||+|++.+++ .|++||+.+.. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 529 l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~----~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~ 598 (694)
T TIGR03375 529 IRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YAD----DEEILRAAELAGVTEFVRRHPDGLDMQIGER 598 (694)
T ss_pred hhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCC----HHHHHHHHHHcChHHHHHhCcccccceecCC
Confidence 764 356788999999999886 59999997641 1 222 2346778888877654 45666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. +++|+|+++|+++ ..+.+|+|++|++
T Consensus 599 -G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~-~~~T~iiItHrl~--~~~~~D~iivl~~ 674 (694)
T TIGR03375 599 -GRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDN 674 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 46899999999999999999999999999999999999999999999886 4899999999985 5688999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 675 -G~i~e~G~~ 683 (694)
T TIGR03375 675 -GRIVADGPK 683 (694)
T ss_pred -CEEEeeCCH
Confidence 799999974
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=312.10 Aligned_cols=219 Identities=26% Similarity=0.306 Sum_probs=170.7
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.++ .+.+|+|+|+.|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.+..
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 56788887763 23599999999999999999999999999999999997421135799999998764
Q ss_pred cc---c-ccceEEEeccCCCCCCCCCHHHHHHHHHH-hc-C-C-CCCCHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000556 909 QE---T-FARISGYCEQNDIHSPFVTVYESLLYSAW-LR-L-P-PEVDSETRKMFIEEVMELVELK-PLIQSLVGLPGVS 979 (1426)
Q Consensus 909 ~~---~-~~~~~gyv~q~~~~~~~lTv~e~l~f~a~-lr-~-~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~vg~~~~~ 979 (1426)
.. . .++.++|++|++.+++.+|+.+++.+... ++ . . ...+.....+++++.++.+++. +..+..+ .+
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NV 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CC
Confidence 31 1 23468999999988888887776543211 11 0 0 0111223345678899999995 3444432 13
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhh-cceEEEEecCc
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA-FDELFLMKRGG 1058 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~-fD~v~ll~~gg 1058 (1426)
.||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|++. .+... +|++++|++ |
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~-g 222 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQ-G 222 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEEC-C
Confidence 69999999999999999999999999999999999999999999999877899999999986 34454 799999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (248)
T PRK09580 223 RIVKSGDF 230 (248)
T ss_pred eEEEeCCH
Confidence 89998875
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=277.12 Aligned_cols=202 Identities=29% Similarity=0.389 Sum_probs=171.5
Q ss_pred CCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc-------cceEEEec
Q 000556 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-------ERTAAYIS 232 (1426)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~-------~~~~~yv~ 232 (1426)
......+||++|++.|++||.++|+|||||||||||-+|+|+-.|+ +|+|.+-|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3345688999999999999999999999999999999999999998 9999999999876543 26799999
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccc
Q 000556 233 QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCA 312 (1426)
Q Consensus 233 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 312 (1426)
|.-.++|+||-.||+...+.++|...+ +....+...|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999988877653211 0122355678999999766
Q ss_pred cccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhc
Q 000556 313 DTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392 (1426)
Q Consensus 313 dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~f 392 (1426)
+- ++.+|||||+|||+||||+...|+|||-||||-+||..|..+|.+.|-.+.+. .++++|.++|+ +....-|
T Consensus 141 ~H-----yP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre-~G~TlVlVTHD-~~LA~Rc 213 (228)
T COG4181 141 TH-----YPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRE-RGTTLVLVTHD-PQLAARC 213 (228)
T ss_pred cc-----CccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhh-cCceEEEEeCC-HHHHHhh
Confidence 53 45589999999999999999999999999999999999999999999888764 56666667776 4567789
Q ss_pred CeEEEecCCeEEE
Q 000556 393 DDIILLSDGQIVY 405 (1426)
Q Consensus 393 D~vilL~~G~iv~ 405 (1426)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999874
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=308.62 Aligned_cols=195 Identities=22% Similarity=0.368 Sum_probs=161.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCC--C---ccceEEEecCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEF--V---PERTAAYISQHDNHIG 239 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~~~ 239 (1426)
..+|+|+|+.++||++++|+|||||||||||++|+|.++|+ +|+|.++|+++... . .++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 45999999999999999999999999999999999999987 99999999887421 1 1357999999998898
Q ss_pred CCCHHHHHHHhhh-hcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 240 EMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 240 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
.+||+||+.++.. .++... .+....++.+++.+||++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSK----------------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999988642 111000 011223567788999987666554
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
+.||||||||++||++++.+|++++|||||+|||+.+...+.+.|+++.+ .+ ++|+.++|+..++.+++|+|++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~-~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EG-MTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cC-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 47999999999999999999999999999999999999999999999864 34 44555788888999999999999
Q ss_pred cCCeE
Q 000556 399 SDGQI 403 (1426)
Q Consensus 399 ~~G~i 403 (1426)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=306.26 Aligned_cols=192 Identities=27% Similarity=0.394 Sum_probs=160.0
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCCCCCCCC
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1426)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999987 999999998764211 1357999999998888999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
++||+.+..... .. . .....++.+++.+||++..++.+ +
T Consensus 92 ~~~~l~~~~~~~---~~--------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---RN--------R-------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---CH--------H-------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998764211 00 0 01123566789999987666544 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.||||||||++||++++.+|++++|||||+|||+.+...+.+.|++++... +++|+.++|+.+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 799999999999999999999999999999999999999999999986533 4455557888888999999999999999
Q ss_pred EEEec
Q 000556 403 IVYQG 407 (1426)
Q Consensus 403 iv~~G 407 (1426)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98876
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=312.51 Aligned_cols=211 Identities=18% Similarity=0.301 Sum_probs=165.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++ |....+|+|+++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 358999999999999999999999999999999999986 3212389999999987431 113569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++. ||+||+.|.....+.... .+....++.+++.+|+.+......
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l- 149 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL- 149 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-
Confidence 875 999999886433211000 001123456778888753211111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.. +. +++.++|+.+++.+++|+|++
T Consensus 150 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tiiivtH~~~~~~~~~d~i~~ 226 (259)
T PRK14274 150 HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KY-TIVIVTHNMQQAARVSDQTAF 226 (259)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CC-EEEEEEcCHHHHHHhCCEEEE
Confidence 234557999999999999999999999999999999999999999999998742 44 455577778889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|+++.+|+++++.
T Consensus 227 l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 227 FYMGELVECNDTNKMF 242 (259)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998764
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=362.65 Aligned_cols=211 Identities=26% Similarity=0.402 Sum_probs=175.7
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++|+||+|+|+.. +++.+|+|+|++|+|||++||+||||||||||+++|+|..++ .+|+|.+||.|
T Consensus 477 ~~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 544 (711)
T TIGR00958 477 GLIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP--TGGQVLLDGVP 544 (711)
T ss_pred CeEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC--CCCEEEECCEE
Confidence 469999999998631 124699999999999999999999999999999999998764 47999999998
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+++ ..+++.++||+|++.++. .|++||+.++. + +.+ ++.++++++..++.+. .|+.+|..
T Consensus 545 i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige~ 614 (711)
T TIGR00958 545 LVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGEK 614 (711)
T ss_pred HHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCC----HHHHHHHHHHcCCHHHHHhCCCccCCcccCC
Confidence 754 346778999999998886 69999998742 1 222 3347788888887654 45666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
..+||||||||++|||||+++|+||+||||||+||+.++..+++ .. ..+++|+|+++|+++ ..+.+|+|++|++
T Consensus 615 -G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~IivL~~ 688 (711)
T TIGR00958 615 -GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQILVLKK 688 (711)
T ss_pred -CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCEEEEEEC
Confidence 46899999999999999999999999999999999999999998 22 235899999999985 5678999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 689 -G~ive~Gt~ 697 (711)
T TIGR00958 689 -GSVVEMGTH 697 (711)
T ss_pred -CEEEEeeCH
Confidence 799999874
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=362.39 Aligned_cols=206 Identities=23% Similarity=0.318 Sum_probs=164.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 45899999999999999999999999999999999999998 9999999999877654 578999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|++|||.++.. +.+.+...+++...+ .++.+ -.+++..||.+|+.+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~------l~~~i--~~lp~gl~t~i~e~G- 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAA------IHDVI--TSRPGGYDAELAEGG- 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhC------CHHHH--HhCcCcccceeccCC-
Confidence 99999987521 001111111111000 11112 235667899999765
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
.+||||||||++||||++++|++++||||||+||+.+...|.+.|++ .++|+|+ ++|.. ++...+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~Ii-itHrl-~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCII-VAHRL-STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEE-EecCH-HHHHhCCEEEEEeCC
Confidence 57999999999999999999999999999999999999999999975 2456665 55554 456679999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
+++++|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=315.88 Aligned_cols=209 Identities=25% Similarity=0.341 Sum_probs=163.3
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++. .+..+|+|+||++++||+++|+||||||||||+++|+|..++ .+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~ 68 (234)
T cd03251 2 EFKNVTFRYPG-----------DGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV--DSGRILIDGHDVRD 68 (234)
T ss_pred EEEEEEEEeCC-----------CCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC--CCCEEEECCEEhhh
Confidence 56777776631 113589999999999999999999999999999999998763 48999999976542
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCcccccccccCCCCC
Q 000556 910 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK-----MFIEEVMELV--ELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 910 ---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~vg~~~~~ 979 (1426)
...++.++|++|++.+++ .||+||+.+.... ....... ..+++.++.+ ++.+..+.. +.
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~ 137 (234)
T cd03251 69 YTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GV 137 (234)
T ss_pred CCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CC
Confidence 234567899999988776 6999999764321 1111111 1233444444 444444433 46
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||+|||||++||++|+.+|++|+|||||+|||+.+...+.+.|+++.+ |+|||+++|++. ++ ..+|++++|++ |+
T Consensus 138 ~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~v~~l~~-G~ 213 (234)
T cd03251 138 KLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TI-ENADRIVVLED-GK 213 (234)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HH-hhCCEEEEecC-Ce
Confidence 8999999999999999999999999999999999999999999999864 899999999986 45 45999999986 68
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
++..|+.
T Consensus 214 i~~~~~~ 220 (234)
T cd03251 214 IVERGTH 220 (234)
T ss_pred EeeeCCH
Confidence 8887764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=294.62 Aligned_cols=212 Identities=22% Similarity=0.345 Sum_probs=186.3
Q ss_pred CCcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCC
Q 000556 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239 (1426)
Q Consensus 160 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 239 (1426)
++-.++++++|+|+.++||+|++++|||||||||.+++|.|.++|+ +|+|+++|.+++... ...|||.|.+..+++
T Consensus 10 K~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~---~G~I~~~g~~~~~~~-~~rIGyLPEERGLy~ 85 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEI-KNRIGYLPEERGLYP 85 (300)
T ss_pred hccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCcc---CceEEEcCcchhhhh-hhhcccChhhhccCc
Confidence 3445688999999999999999999999999999999999999998 999999999886543 346999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCc
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDE 319 (1426)
Q Consensus 240 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~ 319 (1426)
.+||.|.|.|-++++|+... +.....+..|+.+++.......
T Consensus 86 k~tv~dql~yla~LkGm~~~----------------------------------e~~~~~~~wLer~~i~~~~~~k---- 127 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKA----------------------------------EIQKKLQAWLERLEIVGKKTKK---- 127 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHH----------------------------------HHHHHHHHHHHhccccccccch----
Confidence 99999999999999886421 2234567889999998776644
Q ss_pred ccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEec
Q 000556 320 MIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLS 399 (1426)
Q Consensus 320 ~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~ 399 (1426)
+..||-|.+|++-+-.+++++|++++||||+|||||.++..+-+.+.++.. .+++|+..+|.++.+.++||+|++|+
T Consensus 128 -Ik~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~--~GatIifSsH~Me~vEeLCD~llmL~ 204 (300)
T COG4152 128 -IKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE--EGATIIFSSHRMEHVEELCDRLLMLK 204 (300)
T ss_pred -HHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh--cCCEEEEecchHHHHHHHhhhhheec
Confidence 457999999999999999999999999999999999999999999998864 45666667889999999999999999
Q ss_pred CCeEEEecChhhHHHHH
Q 000556 400 DGQIVYQGPRELVLEFF 416 (1426)
Q Consensus 400 ~G~iv~~G~~~~~~~~F 416 (1426)
+|+.|.+|+.+++..-|
T Consensus 205 kG~~V~~G~v~~ir~~~ 221 (300)
T COG4152 205 KGQTVLYGTVEDIRRSF 221 (300)
T ss_pred CCceEEeccHHHHHHhc
Confidence 99999999999998744
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.26 Aligned_cols=210 Identities=18% Similarity=0.275 Sum_probs=166.3
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcC---CCCCCCceeEEEEcCccCCCCC-----ccceEEEecCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK---LDSSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDN 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~---~~~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~ 236 (1426)
+++|+|+|+.+++|++++|+||||||||||+++|+|. .++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 4589999999999999999999999999999999997 3331 13899999999875421 1356999999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
.++ .||+||+.++.+..+.... ......++++++.+||.+...+..
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKDN---------------------------------AFIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchhhhh
Confidence 776 6999999886543211000 001123567788899865322222
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+..++.||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++|+.++|+..++.+++|+|+
T Consensus 141 -~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiivtH~~~~~~~~~d~v~ 216 (250)
T PRK14245 141 -KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KD-YTIVIVTHNMQQAARVSDKTA 216 (250)
T ss_pred -hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhCCEEE
Confidence 23456799999999999999999999999999999999999999999999874 24 445557788888999999999
Q ss_pred EecCCeEEEecChhhHH
Q 000556 397 LLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 217 FFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999998874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=314.29 Aligned_cols=212 Identities=21% Similarity=0.333 Sum_probs=166.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|++|++||+++|+|||||||||||++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++..
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 358999999999999999999999999999999999986410 1389999999876421 123579999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.++....+.... .+....++.+++.+||........
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRL- 142 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 9999999999886543211000 001224566788888842111111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..+..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +. +||.++|+..++.+++|+|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~-tviivsH~~~~~~~~~d~i~~ 219 (258)
T PRK14241 143 DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DY-TIVIVTHNMQQAARVSDQTAF 219 (258)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CC-EEEEEecCHHHHHHhCCEEEE
Confidence 234557999999999999999999999999999999999999999999998853 34 555577888889999999999
Q ss_pred ec------CCeEEEecChhhHH
Q 000556 398 LS------DGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~------~G~iv~~G~~~~~~ 413 (1426)
|+ +|++++.|+.+++.
T Consensus 220 l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 220 FNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EecccCCCCceEEecCCHHHHH
Confidence 96 79999999988764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=325.99 Aligned_cols=202 Identities=27% Similarity=0.403 Sum_probs=165.5
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 240 (1426)
+.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.++.++|.. |+..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~-hlF~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRV-HLFS 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccch-HHHH
Confidence 346999999999999999999999999999999999999998 9999999999877665 46789999975 6666
Q ss_pred CCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhC-------Cccccc
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLG-------LEVCAD 313 (1426)
Q Consensus 241 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~d 313 (1426)
.|+|+||..+... ...++. -.+++..| .++..|
T Consensus 426 ~Tlr~NL~lA~~~-------------------------AsDEel---------------~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLANPD-------------------------ASDEEL---------------WAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcCCC-------------------------CCHHHH---------------HHHHHHcCHHHHHHhChhhhh
Confidence 7999999986421 111111 11223333 345678
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
|.+|+.+ +.||||||||++|||+|++++++++|||||.|||+.|..+++..|.+.+ .++|+++ ++|+... .+.||
T Consensus 466 t~lge~G-~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~--~~kTll~-vTHrL~~-le~~d 540 (573)
T COG4987 466 TWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLM-VTHRLRG-LERMD 540 (573)
T ss_pred chhccCC-CcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHh--cCCeEEE-Eeccccc-HhhcC
Confidence 8999765 5799999999999999999999999999999999999999999998754 3556555 5666544 46789
Q ss_pred eEEEecCCeEEEecChhhHHH
Q 000556 394 DIILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~~ 414 (1426)
+|++|++|+++++|.+.+++.
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999998864
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=315.42 Aligned_cols=212 Identities=21% Similarity=0.319 Sum_probs=166.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|+.|+||++++|+|||||||||||++|+|.++|. ...+|+|+++|+++... ..++.++|++|++..
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35899999999999999999999999999999999998741 01289999999887532 123578999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++. ||+||+.++...++.... + .+....++.+++.+||.+......
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 157 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL- 157 (267)
T ss_pred CCC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 774 999999987543221000 0 001123566788889864211111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++.+ +. +|+.++|+.+++.+++|++++
T Consensus 158 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~-tiiivtH~~~~~~~~~d~v~~ 234 (267)
T PRK14235 158 HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NY-TIVIVTHSMQQAARVSQRTAF 234 (267)
T ss_pred hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CC-eEEEEEcCHHHHHhhCCEEEE
Confidence 234557999999999999999999999999999999999999999999998753 34 555577888888899999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|+++.+|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 235 FHLGNLVEVGDTEKMF 250 (267)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=312.20 Aligned_cols=211 Identities=20% Similarity=0.315 Sum_probs=166.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC-----ccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|++|++||+++|+|||||||||||++|+|..+|. ...+|+|.++|.++.... .++.++|++|++..
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998641 113899999999875321 13569999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++ +|++||+.|.....+.... .+....++.+++.+||.+......
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 141 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL- 141 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-
Confidence 77 8999999986543221000 001123456778888742110111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.. +. +|+.++|+..++.+++|+|++
T Consensus 142 ~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~-tiiivsH~~~~~~~~~d~v~~ 218 (251)
T PRK14270 142 KKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EY-TIVIVTHNMQQASRVSDYTAF 218 (251)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CC-eEEEEEcCHHHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999998753 34 455567778889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|++++.|+.+++.
T Consensus 219 l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 219 FLMGDLIEFNKTEKIF 234 (251)
T ss_pred EECCeEEEeCCHHHHh
Confidence 9999999999998764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=313.44 Aligned_cols=207 Identities=24% Similarity=0.350 Sum_probs=167.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCcc-----CCCCCc-------cceEEEec
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD-----MGEFVP-------ERTAAYIS 232 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~-----~~~~~~-------~~~~~yv~ 232 (1426)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35899999999999999999999999999999999999987 9999999987 554322 23589999
Q ss_pred CCCC--CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcc
Q 000556 233 QHDN--HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV 310 (1426)
Q Consensus 233 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~ 310 (1426)
|++. +.+.+|+.||+.+.....+... + .+....++++++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARH-Y--------------------------------GDIRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCc-H--------------------------------HHHHHHHHHHHHHcCCCh
Confidence 9873 5777899999976432110000 0 001223567889999974
Q ss_pred -cccccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHH
Q 000556 311 -CADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETY 389 (1426)
Q Consensus 311 -~~dt~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~ 389 (1426)
..++. +..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+. .+.+|+.++|+..++.
T Consensus 143 ~~~~~~-----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~ 216 (258)
T PRK11701 143 ARIDDL-----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVAR 216 (258)
T ss_pred hHHhCC-----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHH
Confidence 44543 4579999999999999999999999999999999999999999999987653 2455666888888999
Q ss_pred hhcCeEEEecCCeEEEecChhhHH
Q 000556 390 DLFDDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 390 ~~fD~vilL~~G~iv~~G~~~~~~ 413 (1426)
+.+|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999988764
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=309.82 Aligned_cols=209 Identities=25% Similarity=0.400 Sum_probs=168.4
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+.. ..+.+|+|+|+++++|++++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP--TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCeEEECCEEhH
Confidence 677888876631 124599999999999999999999999999999999998653 4799999998753
Q ss_pred c---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccccc------CCCCC
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG------LPGVS 979 (1426)
Q Consensus 909 ~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg------~~~~~ 979 (1426)
. ...++.++|++|++..++ .|+.|++.+... ... .+.+.++++.+++.+..+..+. .....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 2 223457899999988776 699999976321 111 2236678888899877766431 11245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +|||+++|++. . .+.+|++++|++ |+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~-~~~~d~v~~l~~-g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-L-LDLVDRIIVMDS-GR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-H-HHhCCEEEEEeC-Ce
Confidence 89999999999999999999999999999999999999999999998764 89999999986 3 479999999986 67
Q ss_pred EEEEc
Q 000556 1060 EIYVG 1064 (1426)
Q Consensus 1060 ~v~~G 1064 (1426)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 77654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=316.13 Aligned_cols=210 Identities=29% Similarity=0.419 Sum_probs=162.4
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++.. +++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+...
T Consensus 2 ~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~ 69 (238)
T cd03249 2 EFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRD 69 (238)
T ss_pred eEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhh
Confidence 567777665310 12359999999999999999999999999999999999865 348999999987542
Q ss_pred ---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccccccc-------ccCCCCC
Q 000556 910 ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVS 979 (1426)
Q Consensus 910 ---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~-------vg~~~~~ 979 (1426)
...++.++|++|++.+++ .||+|++.+....+ ..+ .+++.++..++.+..+.+ .. ..+.
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 138 (238)
T cd03249 70 LNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGS 138 (238)
T ss_pred cCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCc
Confidence 223456999999988776 69999997642211 111 123334444443322211 11 1246
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.+|++++|++ |+
T Consensus 139 ~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~ 214 (238)
T cd03249 139 QLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQ 214 (238)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CE
Confidence 899999999999999999999999999999999999999999999987 7999999999986 35 48999999986 78
Q ss_pred EEEEcCC
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~v~~G~~ 1066 (1426)
+++.|+.
T Consensus 215 i~~~~~~ 221 (238)
T cd03249 215 VVEQGTH 221 (238)
T ss_pred EEEeCCH
Confidence 8888874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=358.59 Aligned_cols=208 Identities=28% Similarity=0.469 Sum_probs=167.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
.++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35899999999999999999999999999999999999998 9999999999887654 478999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|++|||.++.. +.+.++..+++...+ .++.++ .|++..||.+|+.+
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i~--~lp~gl~T~i~e~G- 599 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAG------VTEFVR--RHPDGLDMQIGERG- 599 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcC------hHHHHH--hCcccccceecCCC-
Confidence 99999988532 011111111111100 111122 46778899999875
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
..||||||||++||||++++|++++||||||+||+.+...|.+.|+++. .++|+|+ ++|.. ++.+.+|+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~--~~~T~ii-ItHrl-~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWL--AGKTLVL-VTHRT-SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--CCCEEEE-EecCH-HHHHhCCEEEEEeCC
Confidence 4799999999999999999999999999999999999999999998864 3456666 45544 456889999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=309.80 Aligned_cols=219 Identities=20% Similarity=0.266 Sum_probs=174.9
Q ss_pred ceeEEeceeeEEecch----hhhhc--cc-ccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEE
Q 000556 827 HSLTFDEVVYSVDMPQ----EMKLQ--GV-LEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGN 899 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~----~~~~~--~~-~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~ 899 (1426)
+.+..+|++..++... .++.. +. ....+.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~ 80 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGK 80 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceE
Confidence 3567777764444311 11111 11 22456799999999999999999999999999999999998763 4799
Q ss_pred EEEcCccCCcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000556 900 ITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVS 979 (1426)
Q Consensus 900 i~i~g~~~~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~ 979 (1426)
|.++|. .+++.|+....+.+|+.||+.+..... ....+...+.++++++.+++.+..+.. +.
T Consensus 81 I~~~g~----------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~ 142 (264)
T PRK13546 81 VDRNGE----------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VK 142 (264)
T ss_pred EEECCE----------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cc
Confidence 999984 356677776777899999998754432 123344445677889999998877765 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcE
Q 000556 980 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 980 ~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~ 1059 (1426)
.||+|||||++||++|+.+|+||+|||||+|||+.+...+.+.|+++.+.|+|||+++|++. ++.+.+|++++|++ |+
T Consensus 143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~ 220 (264)
T PRK13546 143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GK 220 (264)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999777999999999986 57788999999985 78
Q ss_pred EEEEcCCC
Q 000556 1060 EIYVGPLG 1067 (1426)
Q Consensus 1060 ~v~~G~~~ 1067 (1426)
++..|+.+
T Consensus 221 i~~~g~~~ 228 (264)
T PRK13546 221 LKDYGELD 228 (264)
T ss_pred EEEeCCHH
Confidence 98888753
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=302.12 Aligned_cols=196 Identities=27% Similarity=0.391 Sum_probs=170.4
Q ss_pred cceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC-------ccceEEEecCCCCCCCCCC
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-------PERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 170 ~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 242 (1426)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||+.+.+.. .+|.+|||+|+..+||.+|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577887775799999999999999999999999999 999999998764321 2588999999999999999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
|+-||.|+.... ....-|.+.+.||++|..+.+ +.
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----PG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----CC
Confidence 999999986421 001246788999999988754 55
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-.|.++.+. -+.=|+.++|...|+.+++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e-~~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDE-INIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHh-cCCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 79999999999999999999999999999999999999999999998764 45667778999999999999999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+...|+.+++..
T Consensus 207 V~A~g~~e~v~~ 218 (352)
T COG4148 207 VKASGPLEEVWG 218 (352)
T ss_pred EEecCcHHHHhc
Confidence 999999998753
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=314.05 Aligned_cols=211 Identities=25% Similarity=0.379 Sum_probs=167.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.++++|+++.++. .+.+|+|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 4778888887631 23589999999999999999999999999999999998753 479999999865
Q ss_pred Cc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV-G-----LPGV 978 (1426)
Q Consensus 908 ~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~v-g-----~~~~ 978 (1426)
.. ..+++.++|++|++.+++. |++|++.+... ... ...+++.++.+++.+..+.+. | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NAT----DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 42 2345678999999887775 99999976421 111 123455566666655443321 1 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCc
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg 1058 (1426)
..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||+++|++. ++ +.+|++++|++ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999986 5899999999986 34 56999999985 7
Q ss_pred EEEEEcCC
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~v~~G~~ 1066 (1426)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88887764
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=324.29 Aligned_cols=232 Identities=27% Similarity=0.412 Sum_probs=192.9
Q ss_pred CCccccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEE
Q 000556 818 RGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT 897 (1426)
Q Consensus 818 ~~~~~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~ 897 (1426)
..|.+|.....+..+++++.. +. .++++|+||||.+.+||.+||+||||||||||.++|.|.-. +..
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~P---Pg--------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~--p~~ 390 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAP---PG--------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP--PTS 390 (580)
T ss_pred CCCCCCCCCceeeEeeeeecC---CC--------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc--cCC
Confidence 457788888899999999843 21 34689999999999999999999999999999999999765 358
Q ss_pred EEEEEcCccCCcc---cccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCcccc
Q 000556 898 GNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSET-----RKMFIEEVMELVELKPLI 969 (1426)
Q Consensus 898 G~i~i~g~~~~~~---~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~-----~~~~v~~~l~~l~L~~~~ 969 (1426)
|.|++||.+.++. .+-+.+||.||+-.+++ -||.||+. |...+.+.+. +...|+|++ +.+.+-.
T Consensus 391 G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelI--l~lP~GY 462 (580)
T COG4618 391 GSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA-----RFGEEADPEKVIEAARLAGVHELI--LRLPQGY 462 (580)
T ss_pred CcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH-----hccccCCHHHHHHHHHHcChHHHH--HhCcCCc
Confidence 9999999988763 46678999999999887 59999994 2333333332 222234443 5677788
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcc
Q 000556 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1426)
Q Consensus 970 ~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD 1049 (1426)
||.+|..| ..||||||||+.+||||-.+|.+++||||-|+||......+.+.|..+.++|+|+|+++|+|+ +...+|
T Consensus 463 dT~iG~~G-~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~D 539 (580)
T COG4618 463 DTRIGEGG-ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVD 539 (580)
T ss_pred cCccCCCC-CCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcc
Confidence 99999754 689999999999999999999999999999999999999999999999999999999999996 678999
Q ss_pred eEEEEecCcEEEEEcCCCcchhHHHHHHH
Q 000556 1050 ELFLMKRGGQEIYVGPLGRHSCQLISYFE 1078 (1426)
Q Consensus 1050 ~v~ll~~gg~~v~~G~~~~~~~~~~~yf~ 1078 (1426)
+|++|+ +|++--|||. ++++.-..
T Consensus 540 kilvl~-~G~~~~FG~r----~eVLa~~~ 563 (580)
T COG4618 540 KILVLQ-DGRIAAFGPR----EEVLAKVL 563 (580)
T ss_pred eeeeec-CChHHhcCCH----HHHHHHhc
Confidence 999998 5899999997 35555443
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=317.32 Aligned_cols=253 Identities=23% Similarity=0.389 Sum_probs=195.8
Q ss_pred HhhhcccccHHHHHHHHHHHHhhc------CCCCCccEEEEeceEEEEEEecCCCCCCChhHHHHHHHHHHHhhhccCCC
Q 000556 87 KLVKVTEVDNEKFLLKLKSRIDRV------GIDLPKVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPS 160 (1426)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~p~v~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ 160 (1426)
|.++..=-|.|+.++-+++.-+-+ ....++=.+.|+|++..-+
T Consensus 500 R~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~------------------------------- 548 (790)
T KOG0056|consen 500 RSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYD------------------------------- 548 (790)
T ss_pred HHHHHhhhhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEecC-------------------------------
Confidence 334444457777777776544422 2223444688888876532
Q ss_pred CcccceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCC---ccceEEEecCCCCC
Q 000556 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV---PERTAAYISQHDNH 237 (1426)
Q Consensus 161 ~~~~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~---~~~~~~yv~Q~d~~ 237 (1426)
..+++|+||||++.||+.+|++||||+||||+|++|-...+.+ +|.|+++|+++.... .++.||.||||..+
T Consensus 549 --p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL 623 (790)
T KOG0056|consen 549 --PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL 623 (790)
T ss_pred --CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCccee
Confidence 2357999999999999999999999999999999999999987 999999999986543 35789999998777
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
|. .|+..||.|+..-. .+.+.+ +++...+ +. =+++++++.++|+||
T Consensus 624 FN-dTI~yNIryak~~A------------------------sneevy--aAAkAA~----IH---drIl~fPegY~t~VG 669 (790)
T KOG0056|consen 624 FN-DTILYNIRYAKPSA------------------------SNEEVY--AAAKAAQ----IH---DRILQFPEGYNTRVG 669 (790)
T ss_pred ec-ceeeeheeecCCCC------------------------ChHHHH--HHHHHhh----HH---HHHhcCchhhhhhhh
Confidence 65 59999998863211 111111 1111111 11 257899999999999
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+++.+ |||||||||+|||+++..|.+++|||.||+||..+.++|..+|.+++. ++|+|+..|. . .+.-.+|.|++
T Consensus 670 ERGLk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHR-L-STivnAD~ILv 744 (790)
T KOG0056|consen 670 ERGLK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHR-L-STIVNADLILV 744 (790)
T ss_pred hcccc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeee-e-hheecccEEEE
Confidence 99996 999999999999999999999999999999999999999999999874 5677764443 3 34556899999
Q ss_pred ecCCeEEEecChhhHHH
Q 000556 398 LSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~~ 414 (1426)
+++|+|++.|.++|++.
T Consensus 745 i~~G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 745 ISNGRIVERGRHEELLK 761 (790)
T ss_pred EeCCeEeecCcHHHHHh
Confidence 99999999999999875
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=298.47 Aligned_cols=170 Identities=28% Similarity=0.412 Sum_probs=149.1
Q ss_pred EEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc
Q 000556 830 TFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ 909 (1426)
Q Consensus 830 ~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~ 909 (1426)
+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+...
T Consensus 2 ~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~ 66 (178)
T cd03229 2 ELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTD 66 (178)
T ss_pred EEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccc
Confidence 5677776653 2469999999999999999999999999999999999865 348999999987543
Q ss_pred -----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000556 910 -----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTE 984 (1426)
Q Consensus 910 -----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgG 984 (1426)
...++.++|++|++..++..|++|++.+. ||+|
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G 104 (178)
T cd03229 67 LEDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGG 104 (178)
T ss_pred cchhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHH
Confidence 23456799999999888889999987531 8999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 985 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 985 qrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 105 ~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999887 899999999986 566789999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-33 Score=350.34 Aligned_cols=200 Identities=29% Similarity=0.453 Sum_probs=164.5
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1426)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+... ++.++||+|++.+|+ .|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-AT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-cc
Confidence 5899999999999999999999999999999999999998 9999999999887654 467999999987665 69
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCC------cccccccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL------EVCADTMV 316 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 316 (1426)
++||+.++..- ...+. +...++..|+ ++..||.+
T Consensus 430 i~~Ni~~~~~~----~~~~~------------------------------------i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAPN----ASDEA------------------------------------LIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCCc----cCHHH------------------------------------HHHHHHHcCCHHHHcCccccCchh
Confidence 99999886320 00001 1122222222 56789999
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
|+.+ +.||||||||++||||++++|++++|||||++||+.++..|.+.|++.. .++|+|+. .|..+. ...+|+|+
T Consensus 470 ge~g-~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviii-tHr~~~-~~~~d~i~ 544 (574)
T PRK11160 470 GEGG-RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMI-THRLTG-LEQFDRIC 544 (574)
T ss_pred cCCC-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEE-ecChhH-HHhCCEEE
Confidence 9864 4799999999999999999999999999999999999999999999864 35666664 444444 46699999
Q ss_pred EecCCeEEEecChhhHHH
Q 000556 397 LLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~~ 414 (1426)
+|++|++++.|+++++++
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999998864
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=322.72 Aligned_cols=217 Identities=25% Similarity=0.388 Sum_probs=180.1
Q ss_pred ccCCCceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEE
Q 000556 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901 (1426)
Q Consensus 822 ~~~~~~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~ 901 (1426)
+......+.|+||++.|+ +++++|+||||++.||+.+||+|||||||||+|++|.+..+ ..+|.|+
T Consensus 531 l~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd--v~sGsI~ 596 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD--VNSGSIT 596 (790)
T ss_pred ccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh--ccCceEE
Confidence 344567899999999996 34689999999999999999999999999999999997654 4589999
Q ss_pred EcCccCCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHcCCcccccccc
Q 000556 902 ISGYPKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRK-----MFIEEVMELVELKPLIQSLV 973 (1426)
Q Consensus 902 i~g~~~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~-----~~v~~~l~~l~L~~~~~~~v 973 (1426)
|||++++. .+.|+.+|.||||..++. -|+..|+.|+. | +..+++.. ..+.+ +.++..+-.++.|
T Consensus 597 iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHd--rIl~fPegY~t~V 668 (790)
T KOG0056|consen 597 IDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHD--RILQFPEGYNTRV 668 (790)
T ss_pred EcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHH--HHhcCchhhhhhh
Confidence 99999764 457888999999998875 58889998752 1 12222211 11211 2367778889999
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEE
Q 000556 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1426)
Q Consensus 974 g~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~l 1053 (1426)
|..|. .|||||||||+|||+++++|.|++|||+||+||..+.+.|+..|.+++. +||-|++.|+.|. .-.+|.|++
T Consensus 669 GERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST--ivnAD~ILv 744 (790)
T KOG0056|consen 669 GERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST--IVNADLILV 744 (790)
T ss_pred hhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh--eecccEEEE
Confidence 98765 5999999999999999999999999999999999999999999999975 7999999999874 445799999
Q ss_pred EecCcEEEEEcC
Q 000556 1054 MKRGGQEIYVGP 1065 (1426)
Q Consensus 1054 l~~gg~~v~~G~ 1065 (1426)
+++ |+++..|.
T Consensus 745 i~~-G~IvErG~ 755 (790)
T KOG0056|consen 745 ISN-GRIVERGR 755 (790)
T ss_pred EeC-CeEeecCc
Confidence 986 79998886
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.50 Aligned_cols=211 Identities=21% Similarity=0.329 Sum_probs=165.2
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++..
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 358999999999999999999999999999999999853 4212389999999887431 124579999999877
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++ +||+||+.++....+.... ......++.+++.+|+.....+..
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKDK---------------------------------QVLDEAVEKSLKGASIWDEVKDRL- 142 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhHHHHH-
Confidence 76 8999999886533221000 001123456677777743211111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.|||||||||+||+||+.+|++++|||||+|||+.+...+.+.|+++.+ + .+|+.++|+.+++.+.+|+|++
T Consensus 143 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~ 219 (252)
T PRK14239 143 HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEE
Confidence 234567999999999999999999999999999999999999999999998753 3 4555577888889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|++++.|+.+++.
T Consensus 220 l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 220 FLDGDLIEYNDTKQMF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.28 Aligned_cols=212 Identities=21% Similarity=0.294 Sum_probs=167.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|++|++||+++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++..
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 459999999999999999999999999999999999985 3111389999999887532 124579999999989
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++.+||+||+.++.+..+.... .+....++.+++.+|+........
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 142 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVNR---------------------------------SEADEIVESSLKRVALWDEVKDRL- 142 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-
Confidence 9999999999876432210000 001123566788888864211111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++.+ + ++|+.++|..+++.+++|++++
T Consensus 143 ~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T PRK14256 143 KSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAF 219 (252)
T ss_pred hCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEE
Confidence 134557999999999999999999999999999999999999999999999853 3 4555577888889999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|+++..|+.+++.
T Consensus 220 l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 220 FYMGDLVECGETKKIF 235 (252)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988763
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=313.83 Aligned_cols=210 Identities=21% Similarity=0.319 Sum_probs=163.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC--C---ccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF--V---PERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~--~---~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++... . .++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 358999999999999999999999999999999999986310 1389999999876421 1 13569999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++ .||+||+.++....+... + ....++.+++.+++....+...
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~------~-----------------------------~~~~~~~~l~~~~l~~~l~~~~- 148 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG------D-----------------------------MDELVERSLRKAAVWDECKDKL- 148 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH------H-----------------------------HHHHHHHHHHHhCCcchhhhhh-
Confidence 87 599999998754322100 0 0112344566666642111111
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+++|++++
T Consensus 149 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~i~~ 225 (269)
T PRK14259 149 NESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--N-FTIVIVTHNMQQAVRVSDMTAF 225 (269)
T ss_pred CCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCEEEE
Confidence 234567999999999999999999999999999999999999999999998742 3 4556678888899999999999
Q ss_pred ecC-----------CeEEEecChhhHHH
Q 000556 398 LSD-----------GQIVYQGPRELVLE 414 (1426)
Q Consensus 398 L~~-----------G~iv~~G~~~~~~~ 414 (1426)
|++ |++++.|+.+++.+
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999988753
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=306.79 Aligned_cols=210 Identities=23% Similarity=0.277 Sum_probs=166.9
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEc--Cc-
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITIS--GY- 905 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~--g~- 905 (1426)
+.++|+++.++.... ...++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++ |.
T Consensus 2 l~~~~l~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~ 73 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQ------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAW 73 (224)
T ss_pred EEEEeeEEEeecccC------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCc
Confidence 567888877742100 00124699999999999999999999999999999999998653 47999998 42
Q ss_pred -cCCc---cc----ccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-ccccccCC
Q 000556 906 -PKKQ---ET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSLVGLP 976 (1426)
Q Consensus 906 -~~~~---~~----~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~vg~~ 976 (1426)
+... .. .++.++|++|++.+++.+||.|++.+..... ....+...+.+.++++.+++.+. .+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---- 146 (224)
T TIGR02324 74 VDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP---- 146 (224)
T ss_pred cchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC----
Confidence 3221 11 1346899999998899999999998754332 12233344568889999999763 3444
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEe
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~ 1055 (1426)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+.+.+|+++.+.
T Consensus 147 -~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 147 -PATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 4579999999999999999999999999999999999999999999999877999999999964 3557899998764
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=357.89 Aligned_cols=206 Identities=23% Similarity=0.392 Sum_probs=161.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46899999999999999999999999999999999999998 9999999999877654 468999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
|+||||.++.... + .+.+. +++...+ .++.++ .+++..||.+|+.+
T Consensus 570 TIreNI~~g~~~~---~-~e~i~---------------------~al~~a~------l~~~i~--~lp~GldT~ige~G- 615 (711)
T TIGR00958 570 SVRENIAYGLTDT---P-DEEIM---------------------AAAKAAN------AHDFIM--EFPNGYDTEVGEKG- 615 (711)
T ss_pred CHHHHHhcCCCCC---C-HHHHH---------------------HHHHHcC------CHHHHH--hCCCccCCcccCCC-
Confidence 9999999864210 0 01111 1111000 111222 35667899999765
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
..||||||||++||||++++|+|++||||||+||+.+...+.+ ... ..++|+|+ ++|.. ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIi-ItHrl-~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLL-IAHRL-STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEE-EeccH-HHHHhCCEEEEEECC
Confidence 4799999999999999999999999999999999999988888 221 23455555 55554 456779999999999
Q ss_pred eEEEecChhhHHH
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~iv~~G~~~~~~~ 414 (1426)
+|+++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=309.99 Aligned_cols=212 Identities=19% Similarity=0.274 Sum_probs=167.1
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 241 (1426)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++....+|+|+++|+++.+... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 458999999999999999999999999999999999975311238999999998765422 356999999988776 6
Q ss_pred CHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccc
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~ 321 (1426)
||+||+.++...++.... . ......++.+++.+||........ ++..
T Consensus 94 tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999886433211000 0 001223566788889853211111 2345
Q ss_pred ccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCC
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 ~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G 401 (1426)
+.|||||||||+|||+|+.+|++++|||||+|||+.+...+.+.|+++. .+ ++++.++|+.+++.+.+|+|++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~--~~-~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS--HN-LSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--CC-CEEEEEecCHHHHHhhCcEEEEEECC
Confidence 6799999999999999999999999999999999999999999999874 24 45555788888899999999999999
Q ss_pred eEEEecChhhHH
Q 000556 402 QIVYQGPRELVL 413 (1426)
Q Consensus 402 ~iv~~G~~~~~~ 413 (1426)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=316.89 Aligned_cols=221 Identities=23% Similarity=0.293 Sum_probs=175.3
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCC---ceEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTG---GYITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 904 (1426)
.+.++|+++.+. .+.+|+|+|++|++||+++|+|+|||||||||++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 588999998773 24699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCc-----ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCC---------CCC-HHHHHHHHHHHHHHcCCcccc
Q 000556 905 YPKKQ-----ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPP---------EVD-SETRKMFIEEVMELVELKPLI 969 (1426)
Q Consensus 905 ~~~~~-----~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 969 (1426)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87642 123567999999988777 59999998864321100 011 122345688899999885422
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcc
Q 000556 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFD 1049 (1426)
Q Consensus 970 ~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD 1049 (1426)
+..... .+..||||||||++||++|+.+|+||||||||+|||+.++..+++.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~~-~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLDD-NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhcC-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 222211 2468999999999999999999999999999999999999999999999976 589999999986 4778899
Q ss_pred eEE-EEecCcEEEEEcCC
Q 000556 1050 ELF-LMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1050 ~v~-ll~~gg~~v~~G~~ 1066 (1426)
+++ +|++ |+++..|+.
T Consensus 268 ~i~~~l~~-G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLTG-GELVEYDDT 284 (305)
T ss_pred EEEEEecC-CEEEEeCCH
Confidence 974 6674 799999875
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=290.22 Aligned_cols=206 Identities=25% Similarity=0.384 Sum_probs=178.1
Q ss_pred CceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCc---ccccceEEEeccCCCCCCC
Q 000556 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPF 928 (1426)
Q Consensus 852 ~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~q~~~~~~~ 928 (1426)
+++.+|+|+|..|++|.+++|+|||||||||||.++++... ..+|+|+++|.++.. ...++..+..-|+......
T Consensus 12 ~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~r 89 (252)
T COG4604 12 GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHINSR 89 (252)
T ss_pred CCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhhhe
Confidence 46789999999999999999999999999999999998665 458999999998654 3456667888898888889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000556 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1426)
Q Consensus 929 lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPT 1008 (1426)
+||+|-+.|+..-.....+ .++.+..++++++.++|.+..|+.. ..||||||||.-||+.|+.+.+.++||||.
T Consensus 90 lTV~dLv~FGRfPYSqGRl-t~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPL 163 (252)
T COG4604 90 LTVRDLVGFGRFPYSQGRL-TKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPL 163 (252)
T ss_pred eEHHHHhhcCCCcccCCCC-chHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcc
Confidence 9999999987432222223 3445567999999999999999874 689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 1009 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
++||...+..+|+.||+++++ |+|||++.||.+. ..-+.|+|+-|++ |+++..|+.+
T Consensus 164 NNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~ 221 (252)
T COG4604 164 NNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPD 221 (252)
T ss_pred cccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHH
Confidence 999999999999999999987 9999999999875 4567799999986 8999999975
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=297.06 Aligned_cols=170 Identities=41% Similarity=0.670 Sum_probs=147.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCC--CCCCCceeEEEEcCccCCCCCccceEEEecCCCCCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL--DSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~--~~~~~~~G~V~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 242 (1426)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++..++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 45899999999999999999999999999999999999 877 9999999998764333567999999998899999
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999763210 0
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCc-hhHHhhcCeEEEecCC
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPA-PETYDLFDDIILLSDG 401 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~-~~~~~~fD~vilL~~G 401 (1426)
.||||||||++||+||+.+|++++|||||+|||..+...+.+.|+++.. .+.|+|+ ++|+. .++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii-~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIIC-SIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEE-EecCchHHHHHhcCEEEEEeCC
Confidence 4999999999999999999999999999999999999999999998754 3555555 55555 4788899999999999
Q ss_pred eEEEec
Q 000556 402 QIVYQG 407 (1426)
Q Consensus 402 ~iv~~G 407 (1426)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=310.14 Aligned_cols=211 Identities=21% Similarity=0.346 Sum_probs=166.0
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
..+|+|+|+++++||+++|+|||||||||||++|+|.+++ ....+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 3589999999999999999999999999999999999874 111389999999887532 123579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++ +||+||+.++....+.... ...+..+++.++.+|+....+.. .
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~-~ 140 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKSK---------------------------------HKLDRIVEESLKKAALWDEVKSE-L 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCcH---------------------------------HHHHHHHHHHHHHcCCCchhHHH-H
Confidence 77 8999999886532211000 00112345667777875321111 2
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.||||||||++||+||+.+|++++|||||+|||..+...+.+.|+++.. + ++|+.++|+..++.+++|+|++
T Consensus 141 ~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~ 217 (250)
T PRK14262 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAF 217 (250)
T ss_pred hCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEE
Confidence 344568999999999999999999999999999999999999999999998753 4 4555577887888999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|+++..|+.+++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 218 MYRGELIEYGPTREIV 233 (250)
T ss_pred EECCEEEEecCHHHHH
Confidence 9999999999988764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=309.89 Aligned_cols=198 Identities=24% Similarity=0.329 Sum_probs=166.8
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-+.++|+++.++ ++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA--PDEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCc--
Confidence 378899988773 2359999999999999999999999999999999999865 34799999872
Q ss_pred CcccccceEEEeccCCCCCCC--CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000556 908 KQETFARISGYCEQNDIHSPF--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ 985 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~--lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGq 985 (1426)
..++|++|++.+++. .|+.+++.+. + ... ++.+.++++.+++.+..++.+ ..|||||
T Consensus 67 ------~~i~~v~q~~~~~~~l~~~~~~~~~~~-----~-~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq 125 (251)
T PRK09544 67 ------LRIGYVPQKLYLDTTLPLTVNRFLRLR-----P-GTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGE 125 (251)
T ss_pred ------cCEEEeccccccccccChhHHHHHhcc-----c-ccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHH
Confidence 358999999877765 4777776431 1 111 234788999999998877763 5799999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEc
Q 000556 986 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVG 1064 (1426)
Q Consensus 986 rqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G 1064 (1426)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|+ + +++..|
T Consensus 126 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~-~i~~~g 202 (251)
T PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-H-HICCSG 202 (251)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-C-ceEeeC
Confidence 99999999999999999999999999999999999999998765 899999999986 5778899999995 4 578888
Q ss_pred CC
Q 000556 1065 PL 1066 (1426)
Q Consensus 1065 ~~ 1066 (1426)
+.
T Consensus 203 ~~ 204 (251)
T PRK09544 203 TP 204 (251)
T ss_pred CH
Confidence 75
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-32 Score=309.62 Aligned_cols=208 Identities=18% Similarity=0.279 Sum_probs=162.6
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC-----CCCCceeEEEEcCccCCCCC-----ccceEEEecCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-----SSLKVSGRVTYNGHDMGEFV-----PERTAAYISQH 234 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~-----~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~ 234 (1426)
..+|+|+|+.+++||+++|+|||||||||||++|+|..+ |+ +|+|.++|+++.... .++.++|++|+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS---EGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCC---ceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 358999999999999999999999999999999999864 44 899999998875321 13569999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccc
Q 000556 235 DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADT 314 (1426)
Q Consensus 235 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 314 (1426)
+..++. ||+||+.++....+.... ...+..+...++.+++.+....
T Consensus 111 ~~~~~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~ 156 (268)
T PRK14248 111 PNPFPK-SIYNNITHALKYAGERRK---------------------------------SVLDEIVEESLTKAALWDEVKD 156 (268)
T ss_pred CccCcc-cHHHHHHHHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCCcchHH
Confidence 887875 999999876432110000 0001123455677777421111
Q ss_pred cccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCe
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~ 394 (1426)
.. +..+..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+
T Consensus 157 ~~-~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~ 232 (268)
T PRK14248 157 RL-HSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDR 232 (268)
T ss_pred HH-hcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCE
Confidence 11 234557999999999999999999999999999999999999999999999753 3 4555577888889999999
Q ss_pred EEEecCCeEEEecChhhHH
Q 000556 395 IILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 395 vilL~~G~iv~~G~~~~~~ 413 (1426)
|++|++|++++.|+.+++.
T Consensus 233 v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 233 TAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=342.56 Aligned_cols=215 Identities=23% Similarity=0.279 Sum_probs=175.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcC----
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG---- 904 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g---- 904 (1426)
++.+|+++.+. ++.+|+|+|+++++||++||+|||||||||||++|+|.....+.+|+|.++|
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 35678887763 2469999999999999999999999999999999999741013479999872
Q ss_pred -------------------ccCC----------c---ccccceEEEeccC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 000556 905 -------------------YPKK----------Q---ETFARISGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSET 951 (1426)
Q Consensus 905 -------------------~~~~----------~---~~~~~~~gyv~q~-~~~~~~lTv~e~l~f~a~lr~~~~~~~~~ 951 (1426)
.++. . ...++.++|++|+ +.+++.+||+|++.+..... ..+.++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 1110 0 1134568999997 67788899999998865432 123344
Q ss_pred HHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-CC
Q 000556 952 RKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TG 1030 (1426)
Q Consensus 952 ~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~-~g 1030 (1426)
.++++.++++.+||.+..+..+ ..|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 4567899999999988777663 57999999999999999999999999999999999999999999999965 49
Q ss_pred CEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCC
Q 000556 1031 RTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1031 ~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~ 1066 (1426)
+|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 253 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLEN-GEIKEEGTP 253 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeC-CEEeeecCH
Confidence 99999999986 46788999999986 788888765
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=312.22 Aligned_cols=211 Identities=24% Similarity=0.327 Sum_probs=167.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCCC----ccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEFV----PERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 238 (1426)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|. ...+|+|.++|.++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 46899999999999999999999999999999999998751 013899999998875432 245789999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+ +||+||+.++......... .+....++.+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKLVPR---------------------------------KEFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccCCCH---------------------------------HHHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999876432110000 001123456678888875332222 2
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..++.||||||||++|||+|+.+|++++|||||+|||+.+...+.+.|+++.+ + ++|+.++|+.+++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999998753 3 45555788888999999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999998774
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=312.39 Aligned_cols=213 Identities=29% Similarity=0.393 Sum_probs=168.8
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC-----CCceeEEEEcCccCCCCCc---cceEEEecCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS-----LKVSGRVTYNGHDMGEFVP---ERTAAYISQHDN 236 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~-----~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~ 236 (1426)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ ...+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 45999999999999999999999999999999999999874 1137999999988754332 345899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
.++.+||+||+.++...... .. ...+ .+....++.+++.+||++..++.
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~-------------~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~- 142 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RA-------------GALT---------------HRDGEIAWQALALAGATALVGRD- 142 (272)
T ss_pred CCCCCcHHHHHhhccccccc--cc-------------ccCC---------------HHHHHHHHHHHHHcCcHhhhcCC-
Confidence 66779999999875321000 00 0000 01123456788999998665544
Q ss_pred cCcccccCChhHhhHHHHHHHHh---------cCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchh
Q 000556 317 GDEMIRGISGGERKRVTTGEMMV---------GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPE 387 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~---------~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~ 387 (1426)
+..|||||||||+||++|+ .+|++|+|||||+|||+.+...+.+.|+++.+..+ ++|+.++|+..+
T Consensus 143 ----~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~-~tviiisH~~~~ 217 (272)
T PRK13547 143 ----VTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LGVLAIVHDPNL 217 (272)
T ss_pred ----cccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEECCHHH
Confidence 4579999999999999999 59999999999999999999999999999865324 445557788888
Q ss_pred HHhhcCeEEEecCCeEEEecChhhHH
Q 000556 388 TYDLFDDIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 388 ~~~~fD~vilL~~G~iv~~G~~~~~~ 413 (1426)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 88999999999999999999987763
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=310.38 Aligned_cols=212 Identities=20% Similarity=0.306 Sum_probs=166.4
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCC--CCCCceeEEEEcCccCCCCC-----ccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD--SSLKVSGRVTYNGHDMGEFV-----PERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~--~~~~~~G~V~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|+.|++|++++|+||||||||||+++|+|..+ |....+|+|+++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 468999999999999999999999999999999999975 21113899999998764321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCccccccccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG 317 (1426)
++. ||+||+.+.....+..... .+....++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNK--------------------------------KKLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCH--------------------------------HHHHHHHHHHHHHcCCCchhhhHh-
Confidence 875 9999998864322110000 001123566788899865322222
Q ss_pred CcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEE
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vil 397 (1426)
+..++.|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++. .+ .+|+.++|...++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KN-FTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHhhcCEEEE
Confidence 23456799999999999999999999999999999999999999999999874 24 4555577888888999999999
Q ss_pred ecCCeEEEecChhhHH
Q 000556 398 LSDGQIVYQGPRELVL 413 (1426)
Q Consensus 398 L~~G~iv~~G~~~~~~ 413 (1426)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=311.60 Aligned_cols=210 Identities=20% Similarity=0.271 Sum_probs=167.6
Q ss_pred cceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCCC-----CccceEEEecCCCC
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGEF-----VPERTAAYISQHDN 236 (1426)
Q Consensus 164 ~~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~ 236 (1426)
+..+|+|+|+.++|||+++|+||||||||||+++|+|.++|. ...+|+|+++|+++... ..++.++|++|++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 457999999999999999999999999999999999999761 01389999999987432 12356999999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccc
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 316 (1426)
.+ .+|++||+.++....+.. . +....++.+++.+||.+..+...
T Consensus 100 ~~-~~tv~enl~~~~~~~~~~------~-----------------------------~~~~~~~~~l~~~~l~~~i~~~~ 143 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNRYK------G-----------------------------DLGDRVKHALQGAALWDEVKDKL 143 (261)
T ss_pred cc-cccHHHHHHHHHhhcCch------H-----------------------------HHHHHHHHHHHHcCCchhhhhhh
Confidence 76 599999999875432110 0 01123456778888754332222
Q ss_pred cCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
+ ...+.||||||||++|||||+.+|++++|||||+|||+.+...+.+.|+++. .+ ++++.++|+..++.+++|+|+
T Consensus 144 ~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~--~~-~tii~isH~~~~i~~~~d~v~ 219 (261)
T PRK14263 144 K-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK--KD-YTIALVTHNMQQAIRVADTTA 219 (261)
T ss_pred h-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cC-CeEEEEeCCHHHHHHhCCEEE
Confidence 2 3456899999999999999999999999999999999999999999999874 23 456667888888999999999
Q ss_pred Eec--------CCeEEEecChhhHH
Q 000556 397 LLS--------DGQIVYQGPRELVL 413 (1426)
Q Consensus 397 lL~--------~G~iv~~G~~~~~~ 413 (1426)
+|+ +|++++.|+.+++.
T Consensus 220 ~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 220 FFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EEecccccccCCceEEEeCCHHHHH
Confidence 996 89999999988764
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-32 Score=325.63 Aligned_cols=208 Identities=19% Similarity=0.281 Sum_probs=171.1
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++.++.. ..+.+|+||||++++|+++||+|||||||||||++|+|...+ .+|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee
Confidence 47788887766421 124699999999999999999999999999999999998763 489999999641
Q ss_pred CcccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrq 987 (1426)
++.+...+.+.+|++|++.+..... ..+.++..+.++++++.+++.+..+..+ +.|||||||
T Consensus 89 ----------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQ 150 (549)
T PRK13545 89 ----------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKS 150 (549)
T ss_pred ----------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHH
Confidence 1222334566789999998754332 1233444556788999999988877764 579999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEEEcCCC
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 988 Rl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~~G~~~ 1067 (1426)
|++|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||+++|++. ++.+.||++++|++ |++++.|+..
T Consensus 151 RVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 151 RLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999999999999999999877999999999986 57788999999985 7899998753
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=300.12 Aligned_cols=193 Identities=24% Similarity=0.334 Sum_probs=162.1
Q ss_pred eEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~ 908 (1426)
+.++|+++.+. ++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN--PEKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeeEEECCCccc
Confidence 56788887763 2469999999999999999999999999999999999876 35899999998764
Q ss_pred c--ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqr 986 (1426)
. ..+++.++|++|+..+++..||+|++.+.... .. . ...++++++.+++.+..+..+ ..||+|||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~~----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 133 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--SP----G--AVGITELCRLFSLEHLIDYPC-----GLLSSGQK 133 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--Cc----c--hHHHHHHHHHcCCchhhhCCh-----hhcCHHHH
Confidence 3 23456799999998888899999999876421 11 1 235789999999987666653 47999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceE
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 987 qRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v 1051 (1426)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||+++|++. ..+.+|..
T Consensus 134 ~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~--~~~~~d~~ 196 (200)
T PRK13540 134 RQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDL--PLNKADYE 196 (200)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCch--hccccchh
Confidence 9999999999999999999999999999999999999998777999999999975 34556654
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=359.54 Aligned_cols=207 Identities=26% Similarity=0.355 Sum_probs=165.6
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 242 (1426)
++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||.++.+... ++.++||+|++.+|+ .|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HH
Confidence 5899999999999999999999999999999999999998 9999999999877654 468999999987765 59
Q ss_pred HHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCcccc
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~ 322 (1426)
++|||.++.+.. .+.++..+++...+ .++.+ ..++...||.||+.+ .
T Consensus 564 I~eNi~l~~~~~------------------------~~~~~i~~a~~~a~------l~~~i--~~lp~gldt~i~e~G-~ 610 (708)
T TIGR01193 564 ILENLLLGAKEN------------------------VSQDEIWAACEIAE------IKDDI--ENMPLGYQTELSEEG-S 610 (708)
T ss_pred HHHHHhccCCCC------------------------CCHHHHHHHHHHhC------CHHHH--HhcccccCcEecCCC-C
Confidence 999999863110 01111111111000 11112 246677899999865 4
Q ss_pred cCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEecCCe
Q 000556 323 GISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1426)
Q Consensus 323 ~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL~~G~ 402 (1426)
+||||||||++||||++++|++|+||||||+||+.+...+.+.|+++ .++|+|+ ++|.. ++.+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~Ii-itHr~-~~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIF-VAHRL-SVAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEE-Eecch-HHHHcCCEEEEEECCE
Confidence 79999999999999999999999999999999999999999999874 2456555 55554 4668899999999999
Q ss_pred EEEecChhhHHH
Q 000556 403 IVYQGPRELVLE 414 (1426)
Q Consensus 403 iv~~G~~~~~~~ 414 (1426)
+++.|+++++++
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-32 Score=323.15 Aligned_cols=227 Identities=25% Similarity=0.362 Sum_probs=192.0
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 907 (1426)
-++.+|++-++ +..++|+||||++++||++||||.||||||||+|+|+|-.. +.+|+|.+||.+.
T Consensus 8 ll~~~~i~K~F-------------ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF-------------GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc-------------CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEc
Confidence 46788887665 34579999999999999999999999999999999999776 4589999999876
Q ss_pred Ccc----cccceEEEeccCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000556 908 KQE----TFARISGYCEQNDIHSPFVTVYESLLYSAWLRL-PPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 908 ~~~----~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LS 982 (1426)
... ....-++.|.|+..+.|++||.||+.++...+. ..-++...-.+...++|+.+++....+++++ .||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 532 234568999999999999999999987765443 2335666777788999999999644777754 799
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecCcEEEE
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~gg~~v~ 1062 (1426)
.||||.|.|||||..+++||+||||||.|+......+.+.++++.++|.+||++||... |+++.|||+.||.+ |+.+-
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~ 225 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVG 225 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEee
Confidence 99999999999999999999999999999999999999999999999999999999997 89999999999986 78888
Q ss_pred EcCC-Cc-chhHHHHH
Q 000556 1063 VGPL-GR-HSCQLISY 1076 (1426)
Q Consensus 1063 ~G~~-~~-~~~~~~~y 1076 (1426)
.++. ++ ...+++..
T Consensus 226 ~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 226 TRPTAAETSEDELVRL 241 (500)
T ss_pred ecccccCCCHHHHHHH
Confidence 8873 33 22344444
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=295.94 Aligned_cols=159 Identities=25% Similarity=0.440 Sum_probs=141.4
Q ss_pred EeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCccCCcc----cccceEEEeccCC---CCCCC
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE----TFARISGYCEQND---IHSPF 928 (1426)
Q Consensus 856 iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~q~~---~~~~~ 928 (1426)
+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+|+|.++|.+.... ..++.++|++|+. .+++.
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP--ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 79999999999999999999999999999999998763 479999999876432 2356799999984 57788
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCC
Q 000556 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008 (1426)
Q Consensus 929 lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPT 1008 (1426)
+|++||+.+... ||+|||||++||++|+.+|++|+|||||
T Consensus 93 ~t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~ 132 (182)
T cd03215 93 LSVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPT 132 (182)
T ss_pred CcHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCC
Confidence 999999976321 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEecC
Q 000556 1009 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 1009 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~g 1057 (1426)
+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|++|
T Consensus 133 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G 180 (182)
T cd03215 133 RGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEG 180 (182)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCC
Confidence 999999999999999999777999999999986 678889999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-32 Score=308.82 Aligned_cols=210 Identities=22% Similarity=0.352 Sum_probs=163.9
Q ss_pred eEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCC--CCCceeEEEEcCccCCCC-----CccceEEEecCCCCCC
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS--SLKVSGRVTYNGHDMGEF-----VPERTAAYISQHDNHI 238 (1426)
Q Consensus 166 ~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~--~~~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 238 (1426)
.+|+|+|++|++||+++|+|||||||||||++|+|..++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998753 112389999999987531 1245689999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+ +||+||+.++....+.... .+....++.+++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK---------------------------------KKLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999986543221000 001123455667777642111111 2
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..+..||||||||++||++|+.+|++++|||||+|||+.+...+.+.|+++. .+. +|+.++|+..++.+.+|+|++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~-tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK--KDY-TIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCC-eEEEEEeCHHHHHhhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 244 4555777888899999999999
Q ss_pred cCCeEEEecChhhHH
Q 000556 399 SDGQIVYQGPRELVL 413 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~~ 413 (1426)
++|++++.|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988764
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=352.16 Aligned_cols=211 Identities=25% Similarity=0.363 Sum_probs=176.8
Q ss_pred ceeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCceEEEEEEEcCcc
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 906 (1426)
..++++|++|.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 333 ~~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p--~~G~I~i~g~~ 398 (588)
T PRK13657 333 GAVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP--QSGRILIDGTD 398 (588)
T ss_pred CeEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEE
Confidence 36999999999852 13589999999999999999999999999999999998764 48999999988
Q ss_pred CCc---ccccceEEEeccCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~gyv~q~~~~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~vg~~ 976 (1426)
+.+ ..+++.++||+|++.+++ .|++||+.++. + +.+ ++.++++++.+++.+. .|+.+|..
T Consensus 399 i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~----d~~i~~al~~~~l~~~i~~lp~gldt~i~~~ 468 (588)
T PRK13657 399 IRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DAT----DEEMRAAAERAQAHDFIERKPDGYDTVVGER 468 (588)
T ss_pred hhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCC----HHHHHHHHHHhCHHHHHHhCcccccchhcCC
Confidence 654 346778999999998886 59999997641 1 222 2336777787776653 35566653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHhhcceEEEEec
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~Hq~~~~i~~~fD~v~ll~~ 1056 (1426)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|||++||+++ ..+.+|++++|++
T Consensus 469 -g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~-~~~tvIiitHr~~--~~~~~D~ii~l~~ 544 (588)
T PRK13657 469 -GRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM-KGRTTFIIAHRLS--TVRNADRILVFDN 544 (588)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-cCCEEEEEEecHH--HHHhCCEEEEEEC
Confidence 46799999999999999999999999999999999999999999999875 4799999999985 5788999999985
Q ss_pred CcEEEEEcCC
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gg~~v~~G~~ 1066 (1426)
|+++..|+.
T Consensus 545 -G~i~~~g~~ 553 (588)
T PRK13657 545 -GRVVESGSF 553 (588)
T ss_pred -CEEEEeCCH
Confidence 788888873
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-32 Score=308.56 Aligned_cols=208 Identities=23% Similarity=0.347 Sum_probs=164.5
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCC--CceeEEEEcCccCCCC-----CccceEEEecCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL--KVSGRVTYNGHDMGEF-----VPERTAAYISQHDNH 237 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~--~~~G~V~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 237 (1426)
+.+|+|+|+.|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987631 1379999999887531 123569999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCc----cccc
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLE----VCAD 313 (1426)
Q Consensus 238 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 313 (1426)
++.+|++||+.++....+...+ + +....++..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRDR-D--------------------------------HLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCcchhhhhhhc
Confidence 9999999999876432211000 0 0011233445555543 2233
Q ss_pred ccccCcccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcC
Q 000556 314 TMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393 (1426)
Q Consensus 314 t~vG~~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD 393 (1426)
+ .++.||||||||++||++|+.+|++++|||||+|||..+...+.+.|+++++ + ++++.++|+..++.+.+|
T Consensus 144 ~-----~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 T-----PATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred C-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 3 3457999999999999999999999999999999999999999999998752 4 455557788888999999
Q ss_pred eEEEecCCeEEEecChhhHH
Q 000556 394 DIILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 394 ~vilL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=341.16 Aligned_cols=221 Identities=20% Similarity=0.264 Sum_probs=179.5
Q ss_pred eeEEeceeeEEecchhhhhcccccCceEEeeeeEEEEeCCcEEEEeccCCCchhHHHhhhcCCCCCc---eEEEEEEEcC
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGG---YITGNITISG 904 (1426)
Q Consensus 828 ~l~~~~v~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~sGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 904 (1426)
-++++|+++.++... ..+.+|+||||++++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQQ---------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCCC---------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 378899988874210 1246999999999999999999999999999999999976531 2589999999
Q ss_pred ccCCcc------cc-cceEEEeccCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCccc---cccc
Q 000556 905 YPKKQE------TF-ARISGYCEQNDI--HSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL---IQSL 972 (1426)
Q Consensus 905 ~~~~~~------~~-~~~~gyv~q~~~--~~~~lTv~e~l~f~a~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~ 972 (1426)
.++... .. ++.+||++|++. +.+.+|+.|++.+...... ..+..+.+++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 876431 11 246899999974 5677899999876432211 22344456678999999999763 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCCCHHHHhhcceE
Q 000556 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 973 vg~~~~~~LSgGqrqRl~iA~~L~~~p~iLlLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~Hq~~~~i~~~fD~v 1051 (1426)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||+++|++. ++.+.+|++
T Consensus 154 -----~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 -----PHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred -----CcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 3579999999999999999999999999999999999999999999999765 899999999986 577889999
Q ss_pred EEEecCcEEEEEcCC
Q 000556 1052 FLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1052 ~ll~~gg~~v~~G~~ 1066 (1426)
++|++ |++++.|+.
T Consensus 228 ~~l~~-G~i~~~g~~ 241 (529)
T PRK15134 228 AVMQN-GRCVEQNRA 241 (529)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99986 788888875
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-32 Score=309.62 Aligned_cols=210 Identities=21% Similarity=0.329 Sum_probs=163.9
Q ss_pred ceEeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCC--CCceeEEEEcCccCCC-C---CccceEEEecCCCCCC
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS--LKVSGRVTYNGHDMGE-F---VPERTAAYISQHDNHI 238 (1426)
Q Consensus 165 ~~iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~--~~~~G~V~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 238 (1426)
+.+|+|+|+.|++||+++|+||||||||||+++|+|..++. ...+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 45899999999999999999999999999999999998752 0138999999987642 1 1235699999998888
Q ss_pred CCCCHHHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccC
Q 000556 239 GEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGD 318 (1426)
Q Consensus 239 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~ 318 (1426)
+ .||+||+.++....+...+ ......++..++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKDK---------------------------------KVLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCch---------------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 8999999886432211000 001122445566677653221111 2
Q ss_pred cccccCChhHhhHHHHHHHHhcCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEEEe
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~~~LSGGqrqRvsia~al~~~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vilL 398 (1426)
..+..|||||||||+||++|+.+|++++|||||+|||+.+...+.+.|+++++ + ++|+.++|+..++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999999753 3 45555777788899999999999
Q ss_pred cCCeEEEecChhhH
Q 000556 399 SDGQIVYQGPRELV 412 (1426)
Q Consensus 399 ~~G~iv~~G~~~~~ 412 (1426)
++|++++.|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=308.48 Aligned_cols=201 Identities=26% Similarity=0.387 Sum_probs=166.4
Q ss_pred EeecceEEEeCCeEEEEEcCCCCcHHHHHHHHhcCCCCCCCceeEEEEcCccCCCCCc---cceEEEecCCCCCCCCCCH
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 167 iL~~vs~~i~~G~~~~llGp~GSGKSTLL~~L~G~~~~~~~~~G~V~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 243 (1426)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999974 3 8999999998765432 2458999999888888999
Q ss_pred HHHHHHhhhhcCCCchhhHhHHHHHHhhhcCCCCCCChHHHHHHHhhhhhhhhHHHHHHHHHhCCcccccccccCccccc
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vG~~~~~~ 323 (1426)
+||+.+..... . .. .+....++.+++.+||.+..++.+ +.
T Consensus 87 ~~nl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-RT---------------------------------EAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCccC-C-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 99998753210 0 00 001224567889999987666544 46
Q ss_pred CChhHhhHHHHHHHHhc-------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhhcCCeEEEEEecCchhHHhhcCeEE
Q 000556 324 ISGGERKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 324 LSGGqrqRvsia~al~~-------~p~vllLDEptsgLDs~t~~~i~~~L~~~~~~~~~t~vi~~~q~~~~~~~~fD~vi 396 (1426)
||||||||++||+||+. +|++++|||||+|||+.+...+.+.|+++.. . +++|+.++|+..++.+++|+|+
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~-~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-Q-GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-C-CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999998864 3 4456667888888999999999
Q ss_pred EecCCeEEEecChhhHH
Q 000556 397 LLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 397 lL~~G~iv~~G~~~~~~ 413 (1426)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1426 | ||||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 5e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 6e-10 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-09 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-09 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-09 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 9e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-08 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-07 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-07 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 8e-07 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 9e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-06 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-06 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 2e-06 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-06 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-06 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-06 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 6e-06 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 6e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 8e-06 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 8e-06 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-05 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-05 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 1e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 2e-05 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-05 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 3e-05 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-05 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 5e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 6e-05 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 9e-05 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-04 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 1e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 1e-04 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 2e-04 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 3e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 5e-04 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 6e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 8e-04 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 9e-04 |
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 16/186 (8%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGY-PKKQETFA 913
L G+S G + L+G +GAGKTT + ++S + + G +T+ G ++
Sbjct: 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG----IVTVFGKNVVEEPHEV 86
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R Y + + E L + A + E +E E+ L I+
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKIKDR 143
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
V S ++L IA L+ NP + +DEPTSGLD A V + ++ G T
Sbjct: 144 VS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLT 198
Query: 1033 VVCTIH 1038
++ + H
Sbjct: 199 ILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 7e-14
Identities = 59/259 (22%), Positives = 90/259 (34%), Gaps = 65/259 (25%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE--- 221
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 84
Query: 222 -------FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
++PE AY M E L F A S E+ A
Sbjct: 85 EVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEMVERA- 130
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
++ GL + + S G +++
Sbjct: 131 ----------------------------TEIAGLGE-----KIKDRVSTYSKGMVRKLLI 157
Query: 335 GEMMVG-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFD 393
++ P L +DE ++GLD ++ LKQ G ++ E L D
Sbjct: 158 ARALMVNPRL-AILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCD 214
Query: 394 DIILLSDGQIVYQG-PREL 411
I L+ +G IV G EL
Sbjct: 215 RIALIHNGTIVETGTVEEL 233
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 1e-24
Identities = 52/220 (23%), Positives = 87/220 (39%), Gaps = 36/220 (16%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETF 912
L L+ G + A++G +G GK+TL+D+L G R G I
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------V 64
Query: 913 ARISGYCEQNDIHSPF-VTVYESLL-----YSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ G+ Q SPF +V + +L + P D + + ++ + L
Sbjct: 65 YQSIGFVPQF-FSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQV----AMQALDYLNLT 119
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1025
L + + LS QR+ + IA + + +I +DEPTS LD IV+ + +
Sbjct: 120 HLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDL 174
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065
TVV T HQP + ++ L+ + G
Sbjct: 175 AQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 9e-17
Identities = 35/254 (13%), Positives = 80/254 (31%), Gaps = 63/254 (24%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ + ++ + G + +LG GK+TLL L G G++
Sbjct: 19 FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEVY---------- 65
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
++ ++ Q + +V + + G ++
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLM------------------------GRST------HI 95
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA- 344
A + L L L A +SGG+R+ + ++ A+A
Sbjct: 96 NTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----LSGGQRQLI-----LIARAIAS 145
Query: 345 ----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL--LQPAPETYDLFDDIILL 398
+ +DE ++ LD + +++ L + T V + + + +LL
Sbjct: 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLL 202
Query: 399 SDGQIVYQGPRELV 412
+ + R ++
Sbjct: 203 NKQNFKFGETRNIL 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 97.6 bits (244), Expect = 1e-22
Identities = 43/215 (20%), Positives = 79/215 (36%), Gaps = 33/215 (15%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG-RKTGGYIT-GNITISGYPKKQETFA 913
L LSG R G + L+G +GAGK+TL+ ++G G I + + + A
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--LA 72
Query: 914 RISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
Y Q PF V+ L + +E + +V + L +
Sbjct: 73 LHRAYLSQ-QQTPPFATPVWHYLTLH----QHDKTRTEL----LNDVAGALALDDKLGRS 123
Query: 973 VGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1026 TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
G +V + H D+ +L+K G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLKGG 209
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 5e-20
Identities = 52/265 (19%), Positives = 81/265 (30%), Gaps = 74/265 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 69
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A AY+SQ V L +
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWHYLTL------------------------HQHDKTRTE 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV--------TT 334
+ L L+ +SGGE +RV T
Sbjct: 106 LLNDVAGA---------------LALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL--- 391
+ L L +DE LD + + L G A++ +DL
Sbjct: 146 PQANPAGQL-LLLDEPMNSLDVAQQSALDKILSALSQ--QGLAIVMSS------HDLNHT 196
Query: 392 ---FDDIILLSDGQIVYQGPRELVL 413
LL G+++ G RE VL
Sbjct: 197 LRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 96.0 bits (240), Expect = 2e-22
Identities = 40/205 (19%), Positives = 80/205 (39%), Gaps = 27/205 (13%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYIT---GNITISGYPKKQETFA 913
L ++ G + G +G GKTTL+ +S Y+ G I +G P +
Sbjct: 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTIST-----YLKPLKGEIIYNGVPIT-KVKG 78
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
+I + + I ++V + L A L + K I + +E VE+ L +
Sbjct: 79 KI-FFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK-- 130
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRT 1032
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 131 ----LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + D + +
Sbjct: 187 IISSRE-----ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 37/249 (14%), Positives = 76/249 (30%), Gaps = 66/249 (26%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE---- 221
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKVKGK 79
Query: 222 --FVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
F+PE +++V + L A GV + +
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVASLYGVKVNKNEIMDA------------- 118
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
L+ + + + +S G +RV ++
Sbjct: 119 -----------------------LESVEVLDLKKK------LGELSQGTIRRVQLASTLL 149
Query: 340 G-PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398
+ +D+ +D + +++ + + + G +IS + E D L
Sbjct: 150 VNAEI-YVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS----SREELSYCDVNENL 203
Query: 399 SDGQIVYQG 407
Sbjct: 204 HKYSTKIDK 212
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 3e-20
Identities = 48/241 (19%), Positives = 81/241 (33%), Gaps = 34/241 (14%)
Query: 797 GRNSSSKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVL 856
G N I E + + L D + P K QG +
Sbjct: 313 GINIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGD-----FV 367
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
LN G F + +MG +G GKTTL+ +L+G + G + +S P+K
Sbjct: 368 LNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK------ 421
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
TV + F +V++ + + +I V
Sbjct: 422 -IAPKFPG-------TVRQLFFKKIR-------GQFLNPQFQTDVVKPLRIDDIIDQEV- 465
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1033
LS + +R+ I + L I +DEP++ LD+ I + +R + +T
Sbjct: 466 ----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTA 521
Query: 1034 V 1034
Sbjct: 522 F 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 2e-13
Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 23/184 (12%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNIT------------ISGYPKKQE 910
RPG + L+G +G GK+T + +L+G + G + Y K
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
+ Q + P L+L E ++ +++++L+ +++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----KSPEDVKRYIKILQLENVLK 216
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
+ LS + +R I + V + DEP+S LD + + +R+ +
Sbjct: 217 R-----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPT 271
Query: 1031 RTVV 1034
+ V+
Sbjct: 272 KYVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-09
Identities = 45/267 (16%), Positives = 78/267 (29%), Gaps = 83/267 (31%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNG--------- 216
+ +PG++ L+G GK+T L LAGK +L GR
Sbjct: 91 SFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPEWQEIIKYF 147
Query: 217 -------HDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARR 269
+ + A Q+ ++I ++ +
Sbjct: 148 RGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKV------------------G 188
Query: 270 ENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGER 329
E + +++ Y+K+L LE V I +SGGE
Sbjct: 189 EL----------------LKLRMEKSPEDVKRYIKILQLE-----NVLKRDIEKLSGGEL 227
Query: 330 KRVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI----- 379
+R +G + DE S+ LD ++ + VI
Sbjct: 228 QRF-----AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVEHD 280
Query: 380 -SLLQPAPETYDLFDDIILLSDGQIVY 405
S+L L D + ++ VY
Sbjct: 281 LSVLD------YLSDFVCIIYGVPSVY 301
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 56/310 (18%), Positives = 93/310 (30%), Gaps = 90/310 (29%)
Query: 149 EDIFNYLGILPSRKKHL--TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
D + PS KK +L G + +++G +GKTTL+ LAG L
Sbjct: 347 NDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-- 404
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
D G+ +P+ + Q TVR+ R + L
Sbjct: 405 -----------DEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKI-------RGQFLNP- 445
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+ + + +K L ++ D V +SG
Sbjct: 446 -QFQTDV-----------------------------VKPLRIDDIIDQEVQH-----LSG 470
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------S 380
GE +RV + PA +DE S LDS +++ + ++
Sbjct: 471 GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFI 529
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY---QGPRELVLEFFESMGFKCPKRKGVADFLQE-- 435
+ L D +I+ + P L G FL+
Sbjct: 530 MAT------YLADKVIVFEGIPSKNAHARAPESL--------------LTGCNRFLKNLN 569
Query: 436 VTSRKDQKQY 445
VT R+D +
Sbjct: 570 VTFRRDPNSF 579
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 2e-19
Identities = 49/227 (21%), Positives = 91/227 (40%), Gaps = 32/227 (14%)
Query: 814 HPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDK---LVLLNGLSGAFRPGVLT 870
+ + F P+ + F ++ VD+ +E ++ K L G R G +
Sbjct: 326 QGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVI 385
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPF 928
++G +G GKTT + +L+G T G + ++T++ K Q I
Sbjct: 386 GIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----YIK--------AEYE 431
Query: 929 VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKR 988
TVYE L + E+++ + + L V LS + +R
Sbjct: 432 GTVYELLSKIDS-------SKLNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQR 479
Query: 989 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1034
+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-12
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR----KTGGYITGNITISGYPK 907
+L L + G++ ++G +G GKTT + +L+G+ + + I +
Sbjct: 103 VNAFVLYRLPI-VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161
Query: 908 K--QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL 965
Q F R+ + + +V + + L +VD + EEV++ +EL
Sbjct: 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELEL 218
Query: 966 KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1025
+ ++ + LS + +R+ IA L+ F DEP+S LD R V R +R
Sbjct: 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR 273
Query: 1026 TVDTGRTVV 1034
+ G+ V+
Sbjct: 274 LANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 2e-12
Identities = 61/296 (20%), Positives = 102/296 (34%), Gaps = 84/296 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ L+ G I+ G + ++GP GKTT + LAG + + G+V ++
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDL-- 417
Query: 219 MGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
T AY Q+ E TV E LL+++ + +
Sbjct: 418 --------TVAYKPQYIKAEYEGTVYE----------------LLSKIDSSKLNSNFYKT 453
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
++ LK LG+ D V D +SGGE +RV +
Sbjct: 454 ---EL-------------------LKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 339 VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQPAPETYDLF----- 392
+ A +DE S LD + ++ + N TA V+ +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--------HDVLMIDYV 538
Query: 393 -DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY 445
D +I+ +G+ G L R+G+ FL +T R+D
Sbjct: 539 SDRLIVF-EGEPGRHGR---ALPPM-------GMREGMNRFLASVGITFRRDPDSG 583
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 62/326 (19%), Positives = 106/326 (32%), Gaps = 89/326 (27%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+ I+K G + ++GP +GKTT + LAG+L ++ E
Sbjct: 105 AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI-------------PNLCEDNDS 151
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP-DPDIDVY 284
DN I E + + E +D+
Sbjct: 152 W--------DNVIRAFRGNELQNY---------------FERLKNGEIRPVVKPQYVDLL 188
Query: 285 MKAIATEGQEANVIT--------DYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
K A +G+ ++ + +K L LE V D + +SGGE +RV
Sbjct: 189 PK--AVKGKVRELLKKVDEVGKFEEVVKELELE-----NVLDRELHQLSGGELQRV---- 237
Query: 337 MMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHI-NSGTAVI------SLLQP 384
+ AL F DE S+ LD ++ ++ + N G AV+ ++L
Sbjct: 238 -AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR---RLANEGKAVLVVEHDLAVLD- 292
Query: 385 APETYDLFDDIILLSDGQIVY------QGPRELVLEFFE----SMGFKCPKRKGVADFLQ 434
L D I ++ VY +G R + EF + + + L
Sbjct: 293 -----YLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLS 347
Query: 435 EVTSRKDQKQY-WTHKEKPYRFVTVE 459
E + + + K Y +E
Sbjct: 348 ERVDVERETLVEYPRLVKDYGSFKLE 373
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 7e-19
Identities = 47/218 (21%), Positives = 94/218 (43%), Gaps = 28/218 (12%)
Query: 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETF 912
+L +S G L G++GAGKTTL+++L+ T +G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 913 ------ARISGYCEQNDIH---SPFVTVYESLL--YSAWLRLPPEVDSETRKMFIEEVME 961
I G+ + V + ++ + + ++D E R ++++
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE-AHQLLK 147
Query: 962 LVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1021
LV + Q +G LST +++R+ IA L+ P ++ +DEP +GLD A ++
Sbjct: 148 LVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLS 202
Query: 1022 TVR--NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ + ++ H +I F ++ L+K G
Sbjct: 203 ILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDG 239
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 2e-18
Identities = 61/264 (23%), Positives = 94/264 (35%), Gaps = 63/264 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
TILK +S I G +L G +GKTTLL L SG V G G+
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYS 91
Query: 226 RTAA-----YISQ--HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
++S + V + + S + +G Y+ + + R
Sbjct: 92 AETVRQHIGFVSHSLLEKFQEGERVIDVVI-SGAFKSIG-VYQDIDDEIR---------- 139
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
A + LK++G+ A I +S GE++RV M
Sbjct: 140 --------NEAHQ----------LLKLVGMSAKAQQY-----IGYLSTGEKQRV-----M 171
Query: 339 VGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISL----LQPAPETY 389
+ AL L +DE + GLD +++ L A+I ++
Sbjct: 172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMI-YVTHFIEEITA-- 228
Query: 390 DLFDDIILLSDGQIVYQGPRELVL 413
F I+LL DGQ + QG E +L
Sbjct: 229 -NFSKILLLKDGQSIQQGAVEDIL 251
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 7e-18
Identities = 56/247 (22%), Positives = 94/247 (38%), Gaps = 38/247 (15%)
Query: 804 SLILTEAQGSHPKKRGMILPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKL--------- 854
S G + +G LP E + DE+ + + ++ L L+ K+
Sbjct: 221 SKSYAARVGINNFLKGY-LPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKL 279
Query: 855 --VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQE 910
L +G + G + ++G +G GKTT +L G G +T I Y K Q
Sbjct: 280 GDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQR 338
Query: 911 TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
F + TV + +L + T F EEV + + L L++
Sbjct: 339 IFP------------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLE 380
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1030
S V + LS + ++L IA L + +D+P+S LD IV + ++
Sbjct: 381 SNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER 435
Query: 1031 RTVVCTI 1037
+ V I
Sbjct: 436 KAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 1e-12
Identities = 35/184 (19%), Positives = 76/184 (41%), Gaps = 21/184 (11%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDI 924
+ + ++G +G GKTT++ +L+G + N K E R G +I
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRG----KEI 74
Query: 925 HSPFVTVYESLLYSAWLRLPPEVDSETRKMF--IEEVMELVELKPLIQSLVGLPGVSG-- 980
++ F +Y + L + V+ ++ + + E++ ++ + + L ++
Sbjct: 75 YNYFKELYSNELKI--VHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLW 132
Query: 981 ------LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
LS +RL +A L+ + D+P+S LD R + + +R + + V+
Sbjct: 133 NKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191
Query: 1035 CTIH 1038
H
Sbjct: 192 VVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 55/298 (18%), Positives = 92/298 (30%), Gaps = 88/298 (29%)
Query: 160 SRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219
+K L +G K G + +LGP GKTT L G++ + G VT +
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 220 GEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
Y Q I P+
Sbjct: 333 S---------YKPQR----------------------------------------IFPNY 343
Query: 280 DIDVYM---KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE 336
D V A ++ + K L L ++ V D +SGGE +++
Sbjct: 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAA 398
Query: 337 MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQPAPETYDLF--- 392
+ A +D+ S+ LD + + +K+ +I +DL
Sbjct: 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIID--------HDLSIHD 450
Query: 393 ---DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE--VTSRKDQKQY 445
D II+ G+ G + + G+ +FL+E VT R+D +
Sbjct: 451 YIADRIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETG 497
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 5e-10
Identities = 49/338 (14%), Positives = 101/338 (29%), Gaps = 95/338 (28%)
Query: 168 LKDVS-GIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL-KVSGRVTYN-------GHD 218
K K + +LG GKTT+L LAG++ + + +V + G +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKE 73
Query: 219 MGEFVPE-----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
+ + E + Q+ + + G+ E+LT++ R +
Sbjct: 74 IYNYFKELYSNELKIVHKIQYVEYASK------FLK-------GTVNEILTKIDERGKKD 120
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
+K ++ + + +L SGG +R+
Sbjct: 121 EVKELLNM--------------TNLWNKDANIL------------------SGGGLQRL- 147
Query: 334 TGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI------SLL 382
+V +L D+ S+ LD + +++ + VI +L
Sbjct: 148 ----LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE---LLKNKYVIVVDHDLIVL 200
Query: 383 QPAPETYDLFDDIILLSDGQIVY----------QGPRELVLEFFESMGFKCPKRKGVADF 432
L D I ++ VY G + + + K + +
Sbjct: 201 D------YLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDE-IKFM 253
Query: 433 LQEVTSRKDQKQYWTHKEKPYRFVTVEEFAEAFQSFHV 470
L+EV+ K T + + +F +
Sbjct: 254 LKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEA 291
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 7e-18
Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 36/234 (15%)
Query: 811 QGSHPKKRGMI----LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKL---VLLNGLSGA 863
G + RG + + F P+ + F + V++ +E + K L G
Sbjct: 249 NGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE 308
Query: 864 FRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFARISGYCEQ 921
+ G + ++G +G GKTT + +L+G T G I ++T++ K Q I
Sbjct: 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA--YKPQ----YIK----- 357
Query: 922 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981
TVYE L + E+++ + + L V + L
Sbjct: 358 ---ADYEGTVYELLSKIDA-------SKLNSNFYKTELLKPLGIIDLYDREV-----NEL 402
Query: 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVV 1034
S + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T +
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 69.6 bits (171), Expect = 4e-12
Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 865 RPGVLTALMGVSGAGKTTLMDVLSGR----KTGGYITGNITISGYPKK--QETFARISGY 918
+ G++ ++G +G GK+T + +L+G+ G + + I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 919 CEQNDIH----SPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
+I +V ++ + K + E+++ + ++ +V
Sbjct: 104 ---GEIRPVVKPQYV----------------DLIPKAVKGKVIELLKKADETGKLEEVVK 144
Query: 975 LPG--------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
+ LS + +R+ IA L+ N + F DEP+S LD R R +R
Sbjct: 145 ALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL 204
Query: 1027 VDTGRTVV 1034
+ G++V+
Sbjct: 205 SEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 9e-10
Identities = 61/310 (19%), Positives = 107/310 (34%), Gaps = 86/310 (27%)
Query: 145 TTVFEDIFNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDS 204
E + Y ++ L+ G IK G + ++GP GKTT + LAG +
Sbjct: 281 EIERETLVTYPRLVKDYGSF--RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP 338
Query: 205 SLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+ G++ ++ T AY Q+ E TV YELL+
Sbjct: 339 T---EGKIEWDL----------TVAYKPQYIKADYEGTV----------------YELLS 369
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324
++ + + ++ LK LG+ D V + +
Sbjct: 370 KIDASKLNSNFYKT-EL---------------------LKPLGIIDLYDREVNE-----L 402
Query: 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTA-VISLLQ 383
SGGE +RV ++ A +DE S LD + ++ + N TA V+
Sbjct: 403 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVE--- 459
Query: 384 PAPETYDLF------DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQE-- 435
+D+ D +++ +G+ G + R+G+ FL
Sbjct: 460 -----HDVLMIDYVSDRLMVF-EGEPGKYGRALPPM----------GMREGMNRFLASIG 503
Query: 436 VTSRKDQKQY 445
+T R+D
Sbjct: 504 ITFRRDPDTG 513
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 60/331 (18%), Positives = 100/331 (30%), Gaps = 99/331 (29%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL---KVSGRVTYNGHDMGEF 222
+ ++K G + ++GP +GK+T + LAG+L +L S E
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94
Query: 223 VPERTAAYI--------SQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
Q+ + I + G ELL +
Sbjct: 95 QNYFEKLKNGEIRPVVKPQYVDLIPKAVK-------------GKVIELLKKADETGK--- 138
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
+ +K L LE V + I+ +SGGE +RV
Sbjct: 139 ------------------------LEEVVKALELE-----NVLEREIQHLSGGELQRV-- 167
Query: 335 GEMMVGPALA-----LFMDEISTGLDSSTTFQIVN---CLKQHVHINSGTAVI------S 380
+ AL F DE S+ LD L + G +V+ +
Sbjct: 168 ---AIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEE-----GKSVLVVEHDLA 219
Query: 381 LLQPAPETYDLFDDIILLSDGQIVY------QGPRELVLEFF------ESMGFKCPKRKG 428
+L L D I ++ VY +G R + EF E++ F+ P
Sbjct: 220 VLD------YLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFR-PYEIK 272
Query: 429 VADFLQEVTSRKDQKQYWTHKEKPYRFVTVE 459
+ V ++ + K Y +E
Sbjct: 273 FTKTGERVEIERETLVTYPRLVKDYGSFRLE 303
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 9e-18
Identities = 34/212 (16%), Positives = 72/212 (33%), Gaps = 43/212 (20%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG-RKTGGYIT-GNITISGYPKKQETFARISGYCEQND 923
G ++G +G+GKTTL+ +SG G I + + Y
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYI-------RYSTNLP 81
Query: 924 IHSPF-VTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPG----- 977
VTV + + E+ + + + +E+++ + L
Sbjct: 82 EAYEIGVTVNDIVYL------YEEL----KGLDRDLFLEMLKA-------LKLGEEILRR 124
Query: 978 -VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
+ LS Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ +
Sbjct: 125 KLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILV 181
Query: 1037 IHQPGIDIFDAF---DELFLMKRGGQEIYVGP 1065
H ++ + G +
Sbjct: 182 TH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 83/288 (28%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ L++++ + G ++LGP SGKTTLL A++G L SG + NG +
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFINGME 66
Query: 219 MGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKP 277
+ + Y + + + +TV + + +G+
Sbjct: 67 VRKIRNYI--RYSTNLPEAYEIGVTVNDIVYLYEELKGLD-------------------- 104
Query: 278 DPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEM 337
+ + E LK L L + + +S G+ V
Sbjct: 105 --------RDLFLE----------MLKALKL----GEEILRRKLYKLSAGQSVLVR---- 138
Query: 338 MVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD-- 390
ALA + +DE +D++ I +K+ ++ T++
Sbjct: 139 -TSLALASQPEIVGLDEPFENVDAARRHVISRYIKE-YGK---EGILV-------THELD 186
Query: 391 ----LFDDIILLSDGQIVYQG--PREL----VLEFFESMGFKCPKRKG 428
+ G + EL ++E +
Sbjct: 187 MLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMD 234
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 57/288 (19%), Positives = 105/288 (36%), Gaps = 74/288 (25%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERT 227
LK ++ IK G +T +LG GK+TL G L S SGR+ ++ + +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDY--SRKG 78
Query: 228 AAYISQH--------DNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP 279
+ + DN + +V + ++F A + E+ +R + A
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPE-----DEIRKRVDNA------ 127
Query: 280 DIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMV 339
LK G+E D +S G++KRV
Sbjct: 128 -----------------------LKRTGIEHLKDKPTHC-----LSFGQKKRV------- 152
Query: 340 GPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYD 390
A+A L +DE + GLD +I+ L + + G +I
Sbjct: 153 --AIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE-MQKELGITIIIATHDIDIVPL 209
Query: 391 LFDDIILLSDGQIVYQGPRELVL---EFFESMGFKCPKRKGVADFLQE 435
D++ ++ +G+++ QG + V E + + P+ + + L+E
Sbjct: 210 YCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 55/218 (25%), Positives = 100/218 (45%), Gaps = 38/218 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYP--KKQETF 912
L G++ + G +TA++G +G GK+TL +G + + +G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS----SGRILFDNKPIDYSRKGI 79
Query: 913 ARIS---GYCEQNDIHSP---FV--TVYESLLYSAW-LRLPPEVDSETRKMFIEEVMELV 963
++ G Q+ P +VY+ + + A ++LP + E RK ++ ++
Sbjct: 80 MKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED---EIRKR-VDNALKRT 131
Query: 964 ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1023
++ L LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 132 GIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLL 186
Query: 1024 RN-TVDTGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
+ G T++ H DI D +F+MK G
Sbjct: 187 VEMQKELGITIIIATH----DIDIVPLYCDNVFVMKEG 220
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 3e-15
Identities = 107/721 (14%), Positives = 196/721 (27%), Gaps = 247/721 (34%)
Query: 121 YEHLNVE-GEA-YLASKALPSFTKFYTTVFE--DIFNYL-GILPSRK-KHLTILKD-VSG 173
+ H++ E GE Y L F + F+ D+ + IL + H+ + KD VSG
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSS---LKVSGRVTYNGHDMGEFVPERTAAY 230
++ LL + + + + L + L + M T Y
Sbjct: 64 TLR--LFWTLL---SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM------MTRMY 112
Query: 231 ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVY-MKAIA 289
I Q D + V F+ V SR + +L R+ ++P ++ + +
Sbjct: 113 IEQRDRLYNDNQV-----FAKY--NV-SRLQPYLKL--RQALLELRPAKNVLIDGVLGS- 161
Query: 290 TEGQEANVITDYYLK-VLGLEVCADTMVGDEMIRGI---SGGERKRVTTGEMMVGPALAL 345
G K + L+VC V +M I + T M+ L
Sbjct: 162 --G-----------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLL---QPAPETYDLFDDIILLSDGQ 402
++ D S+ ++ I+S A + L +P + ++ + +
Sbjct: 209 IDPNWTSRSDHSSNIKL--------RIHSIQAELRRLLKSKPYENCLLVLLNV---QNAK 257
Query: 403 IVYQGPRELVLEFFESMGFKCP-----KRKGVADFLQEVTSRKDQKQYWTHKEKPYRFVT 457
+ C + K V DFL T+ ++
Sbjct: 258 AW------------NAFNLSCKILLTTRFKQVTDFLSAATTTH---------------IS 290
Query: 458 VEEFAEAFQSFHVGQKISDELRTPFDKSKSHRAALTTEVYGAGKRELLKTCISRELLLMK 517
++ + DE+++ K L + RE+L
Sbjct: 291 LDHHSMTLTP--------DEVKSLLLK------YLDCRP----------QDLPREVL--T 324
Query: 518 RNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGALFFATAMVMFNGLAEIS 577
N +S +A + KH D T I
Sbjct: 325 TNPRR-------LSIIAESIRDGLATWDNWKHVNCDK--------LTTI---------IE 360
Query: 578 MTIAKL-PVFYKQR--DFRFFPPWAYAIPSWILKIPISFLEVAVWVFLTYYVIGCDPNAG 634
++ L P Y++ FPP A IP L + +W +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSA--------HIPTILLSL-IWFDVIKSD-------- 403
Query: 635 RFFKQYLLFLAVNQMASALFRLIAATGRSMVVANTFEDIKKWWKWAYW------------ 682
V + + L + S+V +K K +
Sbjct: 404 -----------VMVVVNKLHK------YSLV--------EKQPKESTISIPSIYLELKVK 438
Query: 683 CSPMSYAQNAIVA--NEFLGYSWKKFTPNSYESIGVQVLKSRGFFAHAYWYW-LG----- 734
+IV N + P + Y+Y +G
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ---------------YFYSHIGHHLKN 483
Query: 735 -----LGALFGFILLFNLGFTMA---------------ITFLNQLEKPRAVITEESESNK 774
LF + L + F + L QL+ + I + +
Sbjct: 484 IEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE 542
Query: 775 Q 775
+
Sbjct: 543 R 543
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 74.1 bits (181), Expect = 3e-13
Identities = 96/600 (16%), Positives = 185/600 (30%), Gaps = 149/600 (24%)
Query: 67 EAFEVDVSNLGLQQRQRLINKLVKVTEVDNEKFLLKLKSRIDRV----GIDLPKVEVRYE 122
+AF V N + Q + ++ E+D+ ++ K + L K E +
Sbjct: 27 DAF---VDNFDCKDVQDMPKSILSKEEIDH---IIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 123 HLNVEGEA----YLASK-----ALPSF-TKFYTTVFEDIFNYLGILP----SRKKHLTIL 168
E +L S PS T+ Y + ++N + SR + L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGH--DMGEFVPER 226
+ ++P + L+ G SGKT + L + S KV ++ + ++
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYKVQCKMDFKIFWLNLKNC--NS 194
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDP------- 279
+ + + +++R S +L + E +K P
Sbjct: 195 PETVLEMLQK----LLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 280 -DIDVY----MKA--------IATEGQE-ANVITDYYLKVLGLEVCADTMVGDEMIR--- 322
+V A + T ++ + ++ + L+ + T+ DE+
Sbjct: 250 LL-NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 323 ---GISGGERKRVTTGEMMVGP-ALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAV 378
+ R P L++ + I GL + ++ VNC K I S
Sbjct: 309 KYLDCRPQDLPREVLT---TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--- 362
Query: 379 ISLLQPAPETYDLFDDIILLSD-------------GQIVYQGPRELVLEFFE-SMGFKCP 424
+++L+PA E +FD + + ++ +V + + S+ K P
Sbjct: 363 LNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 425 KRK--GVADFLQEVTSRKDQK---------QY-------WTHKEKP------YRFV---- 456
K + E+ + + + Y P Y +
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHL 481
Query: 457 -------TVEEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALTT-EVYGAGKRELLKT 507
+ F F F + QKI + T ++ S S L + Y K +
Sbjct: 482 KNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQQLKFY---KPYICDN 537
Query: 508 CISRELL-------LMKRNSFVYIFKLTQISSVALAFMTLFLRTKMHKHSLTDGGIYAGA 560
E L L K + K T + +AL M + I+ A
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL----------MAED----EAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.3 bits (171), Expect = 4e-12
Identities = 91/603 (15%), Positives = 162/603 (26%), Gaps = 184/603 (30%)
Query: 12 TSLRGN----ISRWRTSSVGAFSKSLREEDDEEALK--WAALEKLPTYNRLRKGLLTTSR 65
LR N +S +T S+ E + + YN R R
Sbjct: 85 EVLRINYKFLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 66 GEAFEVDVS-NLGLQQ-----RQRLINKLVKVTEV----DNEKFLLKLKSRIDRVGIDLP 115
E+ + N+ + + + + +V D + F L L + L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLE 200
Query: 116 KVEVRYEHLNVEGEAYLASKALPSFTKFYTTVFEDIFNYLGILPSRKKH---LTILKDV- 171
++ ++ + + I L L K + L +L +V
Sbjct: 201 MLQKLLYQIDPNWTS------RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 172 -SGIIKP--GRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA 228
+ +LL TT VT +F+ T
Sbjct: 255 NAKAWNAFNLSCKILL-------TTR--------FKQ------VT-------DFLSAATT 286
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
+IS + + +T E + + + R + L P + I
Sbjct: 287 THISLDHHSMT-LTPDEVKSLLLKY--LDCRPQDLPREVL-----TTNP-----RRLSII 333
Query: 289 ATEGQEANVITDYYLKVLG------LEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
A ++ D + V +E + + E RK
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY--------RKMFD--------R 377
Query: 343 LALFMDE--ISTGL--------DSSTTFQIVNCLKQHVHINSGTAVISLL--QPAPETY- 389
L++F I T L S +VN L ++ SL+ QP T
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY----------SLVEKQPKESTIS 427
Query: 390 --DLFDDIILLSDG------QIV--YQGPRELVLEFFESMGFKCPKRKGVADFLQEVTSR 439
++ ++ + + IV Y P+ F+S P D
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKT-----FDSDDLIPPY----LD-------- 470
Query: 440 KDQKQYWT-----HKEKPYRFVTVEEFAEAFQSFH-VGQKISDELRTPFDKSKSHRAALT 493
QY+ H + + F F F + QKI + T ++ S S L
Sbjct: 471 ----QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNASGSILNTLQ 525
Query: 494 T------------EVYGAGKRELLK--------------TCISRELLLMKRNSFVYIFKL 527
Y +L T + R + LM + ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEAH 584
Query: 528 TQI 530
Q+
Sbjct: 585 KQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.4 bits (161), Expect = 6e-11
Identities = 113/760 (14%), Positives = 219/760 (28%), Gaps = 268/760 (35%)
Query: 742 ILLFNLGFTMAITFLNQLEKPRAVITEESESN--KQDNRIRGTVQL----SARGESG--- 792
+ +F F + + P++++++E + + + GT++L ++ E
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK 81
Query: 793 --EDISGRNSS-SKSLILTEAQGSHPKKRGMILPFEPHSLTFDEVV----YSVDMPQEM- 844
E++ N S I TE + R I E +++ Y+V Q
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI---EQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 845 KLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTL-MDVLSGRKTGGYITGNITIS 903
KL+ L +L RP + GV G+GKT + +DV K
Sbjct: 139 KLRQALL-EL----------RPAKNVLIDGVLGSGKTWVALDVCLSYKV----------- 176
Query: 904 GYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV 963
Q F ++ WL L +S E V+E
Sbjct: 177 -----QCKM--------------DF-KIF-------WLNL-KNCNSP------ETVLE-- 200
Query: 964 ELKPLIQSL---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIV 1019
++Q L + S +L I + A + +P + L +V
Sbjct: 201 ----MLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL------LV 249
Query: 1020 MRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLI----- 1074
+ V+N ++AF+ SC+++
Sbjct: 250 LLNVQNA----------------KAWNAFN-------------------LSCKILLTTRF 274
Query: 1075 -SYFEAIPG-------VEKIKDGYNPATWMLEVTASSQEVALGVDFNDIFRCSELYRRNK 1126
+ + ++ P + + L D
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDE-VKSLLLK----YLDCRPQD------------ 317
Query: 1127 ALIEELSKPTPGSKDLYFPTQYSQSAFTQFMACL--WKQHWSYWRNPQYTAVRFFFTAFI 1184
L E+ P + + W W++ + + +
Sbjct: 318 -LPREVLTTNP----R---------RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 1185 AVLLGSLFWDMGSKTRKSQDLFNAMGSMFTAIIF----------LGLQYCSSVQPVVSVE 1234
VL + + + +F+ + +F L L + ++ V V
Sbjct: 364 NVL----------EPAEYRKMFDRLS------VFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 1235 RTVFYREKAAGMYSGLPWALAQAMIEIPYIFVQSVVYCVIVYAM-----------MGYDW 1283
++ YS + ++ I IP I+++ V YA+ +D
Sbjct: 408 VNKLHK------YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 1284 TAEKFSWYFFFMYITLLLFTFYGMLTVAITPNHHIAAI----VSTLFYGIWYLFCGFVIP 1339
+ + Y ++ G HH+ I TLF + +L F+
Sbjct: 462 --DDLIPPYLDQYF----YSHIG---------HHLKNIEHPERMTLF-RMVFLDFRFLEQ 505
Query: 1340 RPRIPVWWRWYYWANPVAWTLYGLIASQFGDV---EDQM-ENGETVKHFLRDYFGFKHDF 1395
+ R + AW G I + + + + +N + + DF
Sbjct: 506 KIR----------HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL----DF 551
Query: 1396 L-----GLVAGVLTCFV--ALF---GFVFALGIKQLNFQR 1425
L L+ T + AL +F KQ+ QR
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV--QR 589
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 31/212 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L +S G + G +G+GK+TL+ +++G T +G++ G KK R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 915 ISGYCEQNDIHSPF-VTVYESLLYSAWLRLPPE---VDSETRKMFIEEVMELVELKPLIQ 970
G Q F V++ + ++ + D + + +++ ME V L
Sbjct: 79 NIGIAFQYPEDQFFAERVFDEVAFA------VKNFYPDRDPVPL-VKKAMEFVGLDFD-- 129
Query: 971 SLVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1028
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 130 ---SFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 1029 TGRTVVCTIHQPGIDIFDAF---DELFLMKRG 1057
G+TV+ H DI D + ++++G
Sbjct: 187 LGKTVILISH----DIETVINHVDRVVVLEKG 214
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 6e-12
Identities = 54/281 (19%), Positives = 100/281 (35%), Gaps = 77/281 (27%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
++ + P KK L++VS +I G L+ G SGK+TLL +AG ++ +
Sbjct: 5 VVNVSHIFHRGTPLEKK---ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT- 60
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQH-DNHIGEMTVRETLAFSARCQGVGSRYELLTE 265
SG V Y+G + R Q+ ++ V + +AF+ + +
Sbjct: 61 --SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RD 112
Query: 266 LARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG-- 323
+A ++ +GL+ + +
Sbjct: 113 PVPLVKKA-----------------------------MEFVGLDF--------DSFKDRV 135
Query: 324 ---ISGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCLKQHVH 371
+SGGE++RV A+A L +DE GLD ++ +++
Sbjct: 136 PFFLSGGEKRRV---------AIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEK-WK 185
Query: 372 INSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQG-PREL 411
G VI + + D +++L G+ V+ G E
Sbjct: 186 -TLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEF 225
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 73.3 bits (181), Expect = 2e-14
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 39/204 (19%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGG-YITGNITISGYPKKQETFA 913
L G+S + + G +++G SG+GK+TL+ +L T G + +K+ +
Sbjct: 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLL 79
Query: 914 R---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
R + G+ Q I P +T E+ +L + K E ++ +
Sbjct: 80 RNRKL-GFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSELG 129
Query: 965 L------KPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1018
L KP LS +++R+ IA L P ++F DEPT LD+
Sbjct: 130 LGDKLSRKP-----------YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKR 178
Query: 1019 VMRTVRNTVDTGRTVVCTIHQPGI 1042
VM + G ++V H+ +
Sbjct: 179 VMDIFLKINEGGTSIVMVTHEREL 202
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 62/249 (24%), Positives = 98/249 (39%), Gaps = 56/249 (22%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
ILK +S +K G ++G SGK+TLL L G LD+ G+V G ++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAP--TEGKVFLEGKEVDYTNE 73
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN-E-----AGIKPD 278
+ + ++ +G F V + L+ EL EN G
Sbjct: 74 KELSLLRNR---KLG---------F------VFQFHYLIPELTALENVIVPMLKMGKPKK 115
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
K L LGL E+ SGGE++RV +
Sbjct: 116 -----EAKERGEY----------LLSELGLGDKLSRKPY-EL----SGGEQQRVAIARAL 155
Query: 339 V-GPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINS-GTAVISLLQPAPETYDLFDDI 395
P L LF DE TG LDS+ T ++++ + IN GT+++ ++ E +L
Sbjct: 156 ANEPIL-LFADE-PTGNLDSANTKRVMDIFLK---INEGGTSIV-MVTHERELAELTHRT 209
Query: 396 ILLSDGQIV 404
+ + DG++V
Sbjct: 210 LEMKDGKVV 218
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 1e-13
Identities = 54/206 (26%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG---RKTGG-YITGNITISGYP 906
E+ + L ++ + G ++MG SG+GK+T+++++ G + T G NI +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLD 73
Query: 907 KKQETFAR---ISGYCEQ--NDIHSPFVTVYES----LLYSAWLRLPPEVDSETRKMFIE 957
+ T R I G+ Q N I P +T E+ L++ + E R+
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE----ERRKRAL 126
Query: 958 EVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
E +++ EL+ + P + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 127 ECLKMAELEERFANH--KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGE 182
Query: 1018 IVMRTVRN-TVDTGRTVVCTIHQPGI 1042
+M+ ++ + G+TVV H +
Sbjct: 183 KIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 3e-06
Identities = 56/250 (22%), Positives = 96/250 (38%), Gaps = 53/250 (21%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+ LK+V+ IK G ++GP SGK+T +L + G LD G V + +
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKST-MLNIIGCLDKP--TEGEVYIDNIKTNDLDD 74
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV- 283
+ + IG F V ++ L+ L EN V
Sbjct: 75 DELTKI---RRDKIG---------F------VFQQFNLIPLLTALEN-----------VE 105
Query: 284 ----YMKAIATEGQEANVITDYYLKVLGLEVCADTMVG---DEMIRGISGGERKRVTTGE 336
+ A G+E LK+ LE + +++ SGG+++RV
Sbjct: 106 LPLIFKYRGAMSGEERRKRALECLKMAELE---ERFANHKPNQL----SGGQQQRVAIAR 158
Query: 337 MMV-GPALALFMDEISTG-LDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+ P + + D+ T LDS T +I+ LK+ ++ G V+ ++ +
Sbjct: 159 ALANNPPI-ILADQ-PTWALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARFGER 214
Query: 395 IILLSDGQIV 404
II L DG++
Sbjct: 215 IIYLKDGEVE 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 49/204 (24%), Positives = 83/204 (40%), Gaps = 39/204 (19%)
Query: 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQ- 909
L+G+S + G +T ++G +G+GK+TL++V++G + G + N I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 910 ------ETFARISGYCEQNDIHSPF--VTVYE-----------SLLYSAWLRLPPEVDSE 950
TF Q P +TV E S L S + + + E
Sbjct: 80 YHYGIVRTF--------QT-PQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE 129
Query: 951 TRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
+ +++E ++L L G LS Q K + I L+ NP +I MDEP +G
Sbjct: 130 MVEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAG 183
Query: 1011 LDARAAAIVMRTVRNTVDTGRTVV 1034
+ A + V G T +
Sbjct: 184 VAPGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 9e-10
Identities = 52/198 (26%), Positives = 74/198 (37%), Gaps = 41/198 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 76
Query: 225 ERTAAY-IS---QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Y I Q + EMTV E L C G L + + E
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEE------- 129
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGE---- 336
M A + L+ L L D G+ +SGG+ K V E
Sbjct: 130 ----MVEKAFK----------ILEFLKLSHLYDRKAGE-----LSGGQMKLV---EIGRA 167
Query: 337 MMVGPALALFMDEISTGL 354
+M P + + MDE G+
Sbjct: 168 LMTNPKM-IVMDEPIAGV 184
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 49/219 (22%), Positives = 82/219 (37%), Gaps = 66/219 (30%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
D V+L+ ++ + + G + ++G SG+GK+TL +G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 904 GYPKK---------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPE 946
G+ Q+ R ++ +++ + P
Sbjct: 70 GHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLAN-----PG 109
Query: 947 VDSETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANP 999
+ E + +L I L VG G LS QR+R+ IA LV NP
Sbjct: 110 MSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNP 164
Query: 1000 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 165 KILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 58/285 (20%), Positives = 108/285 (37%), Gaps = 94/285 (32%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F +I F Y + IL +++ IK G + ++G SGK+TL +
Sbjct: 10 FRNIRFRY------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE- 62
Query: 207 KVSGRVTYNGHDMGEFVPE--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
+G+V +GHD+ P R +G + +++ + + S
Sbjct: 63 --NGQVLIDGHDLALADPNWLR---------RQVG-VVLQDNVLLN------RS------ 98
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANV---ITD----YYLKVLGLEVCADTMVG 317
+N + P ++ + A + A I++ Y +T+VG
Sbjct: 99 ---IIDNISLANPGMSVEKVIYAA----KLAGAHDFISELREGY-----------NTIVG 140
Query: 318 DEMIRGI--SGGERKRVTTGEMMVGPALA---------LFMDEISTGLDSSTTFQIVNCL 366
+ +G SGG+R+R+ A+A L DE ++ LD + I+ +
Sbjct: 141 E---QGAGLSGGQRQRI---------AIARALVNNPKILIFDEATSALDYESEHVIMRNM 188
Query: 367 KQHVHINSGTAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
+ + +I S ++ A D II++ G+IV QG
Sbjct: 189 HK-ICKGRTVIIIAHRLSTVKNA-------DRIIVMEKGKIVEQG 225
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 2e-11
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 45/199 (22%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L +S +P + A G SG GK+T+ +G ITI G P
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITIDGQPIDN 68
Query: 910 ETFA----RISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+ +I G+ Q+ + T+ E+L Y L + E + +V++L
Sbjct: 69 ISLENWRSQI-GFVSQD----SAIMAGTIRENLTYG----LEGDYTDED----LWQVLDL 115
Query: 963 VELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1015
+ ++++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ +
Sbjct: 116 AFARSFVENMPDQLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 1016 AAIVMRTVRNTVDTGRTVV 1034
++V + + +++ GRT +
Sbjct: 175 ESMVQKAL-DSLMKGRTTL 192
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 53.2 bits (129), Expect = 2e-07
Identities = 59/276 (21%), Positives = 99/276 (35%), Gaps = 76/276 (27%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
+ F Y ++ IL+D+S +P + GP GK+T+ SL
Sbjct: 4 ARHVDFAY----DDSEQ---ILRDISFEAQPNSIIAFAGPSGGGKSTI---------FSL 47
Query: 207 ------KVSGRVTYNGHDMGEFVPE--RTA-AYISQHDNHIGEMTVRETLAFSARCQGVG 257
+G +T +G + E R+ ++SQ D+ I T+RE L +
Sbjct: 48 LERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ-DSAIMAGTIRENLTY-------- 98
Query: 258 SRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317
G++ D + + + A + V + +T VG
Sbjct: 99 ----------------GLEGDYTDEDLWQVL----DLAF-ARSF---VENMPDQLNTEVG 134
Query: 318 DEMIRGI--SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSG 375
+ RG+ SGG+R+R+ + L +DE + LDS + + L +
Sbjct: 135 E---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL-DSLMKGRT 190
Query: 376 TAVI----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
T VI S + A D I + GQI G
Sbjct: 191 TLVIAHRLSTIVDA-------DKIYFIEKGQITGSG 219
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 3e-11
Identities = 53/207 (25%), Positives = 81/207 (39%), Gaps = 54/207 (26%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L +S PG AL+G SGAGK+T++ D+ SG I I G Q
Sbjct: 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRIDGQDISQ 120
Query: 910 ETFA---RISGYCEQ-----NDIHSPFVTVYESLLY---SAWLRLPPEVDSETRKMFIEE 958
T A G Q ND T+ +++ Y +A + E +E
Sbjct: 121 VTQASLRSHIGVVPQDTVLFND------TIADNIRYGRVTAG-------NDE-----VEA 162
Query: 959 VMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1011
+ + I + VG G+ LS +++R+ IA ++ P II +DE TS L
Sbjct: 163 AAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSAL 221
Query: 1012 DARAAAIVMRTVRNTVDTGRTVVCTIH 1038
D + ++ V RT + H
Sbjct: 222 DTSNERAIQASL-AKVCANRTTIVVAH 247
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 9e-11
Identities = 53/201 (26%), Positives = 82/201 (40%), Gaps = 40/201 (19%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L GLS + G AL+G SG GK+T++ D ++G + + G KQ
Sbjct: 1049 LQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEIKQ 1099
Query: 910 ETFARISGYCEQNDIHS--PFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVE 964
+ Q I S P + ++ E++ Y R+ + I +
Sbjct: 1100 ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEE-------IVRAAKEAN 1149
Query: 965 LKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+ I SL VG G LS Q++R+ IA LV P I+ +DE TS LD +
Sbjct: 1150 IHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEK 1208
Query: 1018 IVMRTVRNTVDTGRTVVCTIH 1038
+V + + GRT + H
Sbjct: 1209 VVQEAL-DKAREGRTCIVIAH 1228
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 1e-10
Identities = 55/213 (25%), Positives = 78/213 (36%), Gaps = 66/213 (30%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK- 908
L GL+ + G AL+G SG GK+T + D L G ++I G +
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGM---------VSIDGQDIRT 456
Query: 909 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETR 952
QE FA T+ E++ Y E
Sbjct: 457 INVRYLREIIGVVSQEPVLFAT---------------TIAENIRYG----REDVTMDE-- 495
Query: 953 KMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
IE+ ++ I L VG G LS Q++R+ IA LV NP I+ +D
Sbjct: 496 ---IEKAVKEANAYDFIMKLPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLD 551
Query: 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1038
E TS LD + A+V + GRT + H
Sbjct: 552 EATSALDTESEAVVQAALDK-AREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 6e-04
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 147 VFEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205
F++I F+Y PSRK + ILK ++ +K G+ L+G GK+T + + D
Sbjct: 389 EFKNIHFSY----PSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443
Query: 206 LKVSGRVTYNGHD 218
G V+ +G D
Sbjct: 444 ---DGMVSIDGQD 453
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 37/198 (18%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-ITGNITISGYPKKQETFA-- 913
L ++ G AL+G +G+GK+T+ +L R Y G+I I G +
Sbjct: 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVNKYNRNSI 91
Query: 914 -RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
I G Q N+ T+ ++LY + E + + + +L
Sbjct: 92 RSIIGIVPQDTILFNE------TIKYNILYGK-----LDATDEE----VIKATKSAQLYD 136
Query: 968 LIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
I++L VG G+ LS +R+R+ IA L+ +P I+ DE TS LD++ +
Sbjct: 137 FIEALPKKWDTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1021 RTVRNTVDTGRTVVCTIH 1038
+ V + + RT++ H
Sbjct: 196 KAVED-LRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 68/272 (25%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F D+ F+Y ++ + LK ++ I G L+G SGK+T+ L D
Sbjct: 20 FSDVNFSY-----PKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--- 71
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHD--NHIGEMTVRETLAFSARCQGVGSRYELLT 264
G + G ++ + +++ + IG + ++T+ F+
Sbjct: 72 -AEGDIKIGGKNVNK---------YNRNSIRSIIG-IVPQDTILFNETI----------- 109
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQ--EANVITDYYLKVLGLEVCADTMVGDEMIR 322
+ N K D AT+ + +A Y + L DT+VG+ +
Sbjct: 110 ----KYNILYGKLD----------ATDEEVIKATKSAQLYDFIEALPKKWDTIVGN---K 152
Query: 323 GI--SGGERKRVTTGEMMV-GPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVI 379
G+ SGGER+R+ ++ P + + DE ++ LDS T + ++ + N +I
Sbjct: 153 GMKLSGGERQRIAIARCLLKDPKI-VIFDEATSSLDSKTEYLFQKAVED-LRKNRTLIII 210
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
S + A + IILL+ G+IV +G
Sbjct: 211 AHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 1e-09
Identities = 48/214 (22%), Positives = 71/214 (33%), Gaps = 65/214 (30%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKK- 908
L GL+ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPLVQ 85
Query: 909 --------------QET--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETR 952
QE F R + E++ Y L E
Sbjct: 86 YDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG----LTRTPTMEE- 125
Query: 953 KMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1005
I V I VG G LS QR+ + +A L+ P ++ +D
Sbjct: 126 ---ITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPRLLILD 181
Query: 1006 EPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1038
TS LDA V R + + RTV+
Sbjct: 182 NATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 116/298 (38%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F+D+ F Y P+ +L+ ++ + PG++T L+GP SGK+T+ +L
Sbjct: 19 FQDVSFAY----PNHPNV-QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------AL 64
Query: 207 ------KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE-----MTVRETLAFSAR 252
G+V +G + ++ A + Q E + RE +A+
Sbjct: 65 LQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY--- 115
Query: 253 CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANV---ITD----YYLKV 305
G+ P ++ E+ I+ Y
Sbjct: 116 ---------------------GLTRTPTMEEITAV----AMESGAHDFISGFPQGY---- 146
Query: 306 LGLEVCADTMVGDEMIRGI--SGGERKRVTTGEMMVGPALA---------LFMDEISTGL 354
DT VG+ G SGG+R+ V ALA L +D ++ L
Sbjct: 147 -------DTEVGE---TGNQLSGGQRQAV---------ALARALIRKPRLLILDNATSAL 187
Query: 355 DSSTTFQIVNCLKQHVHINSGTAVI-----SLLQPAPETYDLFDDIILLSDGQIVYQG 407
D+ ++ L + S T ++ SL + A I+ L +G + QG
Sbjct: 188 DAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA-------HHILFLKEGSVCEQG 238
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 61.2 bits (148), Expect = 2e-09
Identities = 35/163 (21%), Positives = 66/163 (40%), Gaps = 28/163 (17%)
Query: 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARI 915
LLN + + G +G GK+TLM ++ + G+ P ++E R
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CRT 497
Query: 916 SGYCEQN-DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
Y E + D +V + + E T++ I++ + + ++
Sbjct: 498 -VYVEHDIDGTHSDTSVLDFVF---------ESGVGTKEA-IKDKLIEFGFTDEMIAMP- 545
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017
+S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 546 ---ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 68/285 (23%), Positives = 111/285 (38%), Gaps = 93/285 (32%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-E 225
ILK V+ ++ G + L+GP +GK+TL LAG + ++ G + +G ++ E P E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-ERGEILLDGENILELSPDE 76
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRYELLTEL-ARRENEAGIKPD 278
R + LAF Q GV L L A+ E
Sbjct: 77 RARKGL--------------FLAF----QYPVEVPGVTIANFLRLALQAKLGRE------ 112
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVT 333
+ + + L++L + + + G SGGE+KR
Sbjct: 113 VGVAEFWTKVKKA-----------LELLDWD--------ESYLSRYLNEGFSGGEKKRNE 153
Query: 334 TGEM-MVGPALALFMDEISTGLDSSTTFQI---------VNCLKQHVHINSGTAVIS--- 380
++ ++ P A+ +DE +GLD I VN ++ N G VI+
Sbjct: 154 ILQLLVLEPTYAV-LDETDSGLD------IDALKVVARGVNAMRGP---NFGALVITHYQ 203
Query: 381 -LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGF 421
+L QP D + ++ DG++V G EL LE E+ G+
Sbjct: 204 RILNYIQP--------DKVHVMMDGRVVATGGPELALE-LEAKGY 239
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 46/201 (22%)
Query: 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITIS 903
L ++ + +L G++ G + ALMG +GAGK+TL +L+G Y + G I +
Sbjct: 9 LWASIDGETIL-KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLD 65
Query: 904 G---------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAWLR 942
G YP E + G VT+ L + +
Sbjct: 66 GENILELSPDERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAK 108
Query: 943 LPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSII 1002
L EV +++ +EL++ S + G S ++KR I LV P+
Sbjct: 109 LGREVGVAEFWTKVKKALELLDWDE---SYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165
Query: 1003 FMDEPTSGLDARAAAIVMRTV 1023
+DE SGLD A +V R V
Sbjct: 166 VLDETDSGLDIDALKVVARGV 186
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.9 bits (136), Expect = 2e-08
Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 78/267 (29%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+K + + G++ L+G +GKTT L A+AG + + G++ +NG D+
Sbjct: 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHV 77
Query: 227 TA----AYISQHDNHIGEMTVRETL---AFSARCQGVGSR-----YEL---LTELARREN 271
A + + E+TV E L A++ + + R + L L E R +
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLKQ 135
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
G T+ SGGE++
Sbjct: 136 LGG---------------------------------------TL---------SGGEQQM 147
Query: 332 VTTGE-MMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHIN-SGTAVISLL--QPAPE 387
+ G +M P L L MDE S GL ++ +++ IN GT + LL Q A
Sbjct: 148 LAIGRALMSRPKL-LMMDEPSLGLAPILVSEVFEVIQK---INQEGTTI--LLVEQNALG 201
Query: 388 TYDLFDDIILLSDGQIVYQGPRELVLE 414
+ +L GQIV +G +L+
Sbjct: 202 ALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 50/193 (25%), Positives = 81/193 (41%), Gaps = 28/193 (14%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
+ + G+ G + L+G +GAGKTT + ++G R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 909 QETFARISGYCEQNDIHSP-----F--VTVYESLLYSAWLRLPPEVDSETRKMFIEEVME 961
I+ P F +TVYE+L+ A+ R D E K +E +
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFS 124
Query: 962 LV-ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1020
L LK ++ L G LS +++ L I L++ P ++ MDEP+ GL + V
Sbjct: 125 LFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVF 179
Query: 1021 RTVRNTVDTGRTV 1033
++ G T+
Sbjct: 180 EVIQKINQEGTTI 192
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 49/193 (25%), Positives = 75/193 (38%), Gaps = 61/193 (31%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
+++ +L ++ + G A +G+SG GK+TL+ DV SG+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 904 GYPKK---------------QETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVD 948
G+ K Q+ S TV E++L P
Sbjct: 402 GHNIKDFLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLGR-----PTAT 443
Query: 949 SETRKMFIEEVMELVELKPLIQSL-------VGLPGVSGLSTEQRKRLTIAVELVANPSI 1001
E + E ++ I +L VG GV LS Q++RL+IA + NP I
Sbjct: 444 DEE----VVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPI 498
Query: 1002 IFMDEPTSGLDAR 1014
+ +DE TS LD
Sbjct: 499 LILDEATSALDLE 511
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 2e-08
Identities = 62/281 (22%), Positives = 104/281 (37%), Gaps = 94/281 (33%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV-SGRVTYNGHDMGEFVP- 224
IL+ +S + PG + ++GP SGK+TL LAG+ +V G V + G D+ P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPE 92
Query: 225 ERTAAYISQHDNHIGEMTVRETLAFSARCQ------GVGSRYELLTELARRENEAGIKPD 278
+R I +AF Q GV +++ L T L + G +
Sbjct: 93 DRAGEGI--------------FMAF----QYPVEIPGVSNQFFLQTALNAVRSYRGQETL 134
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR-----GISGGERKRVT 333
D + +L + ++++ G SGGE+KR
Sbjct: 135 DRFDFQDLMEEK------------IALLKMP--------EDLLTRSVNVGFSGGEKKR-- 172
Query: 334 TGE----MMVGPALALFMDEISTGLDSSTTFQI---------VNCLKQHVHINSGTAVIS 380
+ ++ P L + +DE +GLD I VN L+ +++
Sbjct: 173 -NDILQMAVLEPELCI-LDESDSGLD------IDALKVVADGVNSLRDG---KRSFIIVT 221
Query: 381 ----LL---QPAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+L +P D + +L G+IV G LV +
Sbjct: 222 HYQRILDYIKP--------DYVHVLYQGRIVKSGDFTLVKQ 254
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 57/205 (27%), Positives = 84/205 (40%), Gaps = 58/205 (28%)
Query: 846 LQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGY-IT-GNITIS 903
L +EDK +L GLS PG + A+MG +G+GK+TL L+GR+ Y +T G +
Sbjct: 26 LHVSVEDKAIL-RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGRE--DYEVTGGTVEFK 82
Query: 904 G---------------------YPKKQETFARISGYCEQNDIHSPFVTVYESLLYSAW-- 940
G YP E I G V+ L +A
Sbjct: 83 GKDLLALSPEDRAGEGIFMAFQYP--VE----IPG-----------VSNQF-FLQTALNA 124
Query: 941 ---LRLPPEVDSETRKMFIEEVMELVELKP--LIQSL-VGLPGVSGLSTEQRKRLTIAVE 994
R +D + +EE + L+++ L +S+ VG G G ++KR I
Sbjct: 125 VRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG--G----EKKRNDILQM 178
Query: 995 LVANPSIIFMDEPTSGLDARAAAIV 1019
V P + +DE SGLD A +V
Sbjct: 179 AVLEPELCILDESDSGLDIDALKVV 203
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 3e-08
Identities = 42/209 (20%), Positives = 78/209 (37%), Gaps = 47/209 (22%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE 910
+L +S + PG L+G +G+GK+TL+ G I I G
Sbjct: 32 GGNAIL-ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----- 82
Query: 911 TFARISGYCEQNDIHSPFVTVY-----------ESLLYSAWLRL---PPEVDSETRKMFI 956
S +T+ + ++S R P S+ I
Sbjct: 83 ------------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---I 125
Query: 957 EEVMELVELKPLIQSLVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1010
+V + V L+ +I+ G + G LS ++ + +A +++ I+ +DEP++
Sbjct: 126 WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAH 185
Query: 1011 LDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1039
LD I+ RT++ TV+ +
Sbjct: 186 LDPVTYQIIRRTLKQAF-ADCTVILCEAR 213
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 57.2 bits (139), Expect = 3e-08
Identities = 50/186 (26%), Positives = 79/186 (42%), Gaps = 47/186 (25%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
++K L + +S + G AL+G SG+GK+T+ DV SG I +
Sbjct: 354 KEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGS---------ICLD 403
Query: 904 GYPKKQETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF 955
G+ + R Q ND T+ ++ Y+A E E
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVHLFND------TIANNIAYAA----EGEYTREQ---- 449
Query: 956 IEE------VMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1008
IE+ ME +E P + +++G G S LS QR+R+ IA L+ + ++ +DE T
Sbjct: 450 IEQAARQAHAMEFIENMPQGLDTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEAT 508
Query: 1009 SGLDAR 1014
S LD
Sbjct: 509 SALDTE 514
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 4e-08
Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 46/180 (25%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITISGYPKKQ 909
L ++ G AL+G SG+GK+T+ D+ G I + G+ ++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGH---------ILMDGHDLRE 409
Query: 910 ETFA---RISGYCEQ-----NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE--- 958
T A Q ND TV ++ Y+ E S + IEE
Sbjct: 410 YTLASLRNQVALVSQNVHLFND------TVANNIAYAR-----TEEYSREQ---IEEAAR 455
Query: 959 ---VMELVELKPL-IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
M+ + + +++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 456 MAYAMDFINKMDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 871 ALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQNDIHSP 927
L+G +GAGK+ +++++G + G + I+ P ++ R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987
++VY ++ Y LR V+ + R + E+ E + + L+ + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 988 RLTIAVELVANPSIIFMDEPTSGLDAR 1014
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 43/183 (23%), Positives = 60/183 (32%), Gaps = 75/183 (40%)
Query: 183 LLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQ------HD 235
LLGP +GK+ L +AG + G V NG D+ PE R ++ Q H
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPH- 84
Query: 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEA 295
++V +A+ R V E RR E
Sbjct: 85 -----LSVYRNIAYGLR--NVERV-----ERDRRVREM---------------------- 110
Query: 296 NVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA---------LF 346
+ LG+ + D +SGGER+RV ALA L
Sbjct: 111 -------AEKLGIA-----HLLDRKPARLSGGERQRV---------ALARALVIQPRLLL 149
Query: 347 MDE 349
+DE
Sbjct: 150 LDE 152
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-07
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 26/167 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++ R T G + ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 914 RIS-GYCEQ--NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
R G Q N + S TV+ ++ P E+D+ + V EL+
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVAL------PLELDNTPKDEVKRRVTELLS------ 149
Query: 971 SLVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1012
LVGL S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 150 -LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 1e-04
Identities = 59/304 (19%), Positives = 102/304 (33%), Gaps = 93/304 (30%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKV--SGRVTYNG 216
+ + L +VS + G++ ++G +GK+TL+ + L+ G V +G
Sbjct: 35 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-----LERPTEGSVLVDG 89
Query: 217 HDMGEFVPERTAAY------ISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRE 270
++ I QH N + TV +A E+ RR
Sbjct: 90 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRV 144
Query: 271 NEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERK 330
E L ++GL D+ + +SGG+++
Sbjct: 145 TE-----------------------------LLSLVGLGDKHDSYPSN-----LSGGQKQ 170
Query: 331 RVTTGEMMVGPALA-----LFMDEISTGLDSSTTFQIVNCLKQHVHINSGT--------- 376
RV + ALA L D+ ++ LD +TT I+ LK IN
Sbjct: 171 RVA-----IARALASNPKVLLCDQATSALDPATTRSILELLKD---INRRLGLTILLITH 222
Query: 377 --AVISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
V+ + D + ++S+G+++ Q V E F PK F+Q
Sbjct: 223 EMDVVK---------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQ 265
Query: 435 EVTS 438
Sbjct: 266 STLH 269
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 7e-07
Identities = 47/197 (23%), Positives = 70/197 (35%), Gaps = 67/197 (34%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP- 224
++ VS I+ G M LLGP SGKTT+L +AG + G V G + + P
Sbjct: 29 RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQ 85
Query: 225 ERTAAYISQHD---NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDI 281
+R + Q+ H MTV + ++F R + V E+ R E
Sbjct: 86 KRNVGLVFQNYALFQH---MTVYDNVSFGLREKRVPK-----DEMDARVREL-------- 129
Query: 282 DVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGP 341
L+ + LE + +SGG+++RV
Sbjct: 130 ---------------------LRFMRLE-----SYANRFPHELSGGQQQRV--------- 154
Query: 342 ALA---------LFMDE 349
ALA L DE
Sbjct: 155 ALARALAPRPQVLLFDE 171
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 25/166 (15%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
+ G+S R G + L+G SG+GKTT++ +++G R T G + G ++ P ++
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R G QN +TVY+++ + + P+ + + R V EL+ +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR------VRELLRF-------M 133
Query: 974 GLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
L + LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 134 RLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 7e-07
Identities = 62/308 (20%), Positives = 103/308 (33%), Gaps = 120/308 (38%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
L ++ I G + ++G GK++LL AL ++D KV G V G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---------- 66
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
+ AY+ Q I ++RE + F G + E
Sbjct: 67 SVAYVPQQ-AWIQNDSLRENILF-------GCQLE------------------------- 93
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
YY V ++ CA T +G+ +G+ SGG+++RV
Sbjct: 94 ------------EPYYRSV--IQACALLPDLEILPSGDRTEIGE---KGVNLSGGQKQRV 136
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAV--- 378
+LA LF D +S +D+ I N + + + T +
Sbjct: 137 ---------SLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRILVT 186
Query: 379 --ISLLQPAPETYDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQEV 436
+S L D II++S G+I G + +L + A+FL+
Sbjct: 187 HSMSYLPQV-------DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTY 229
Query: 437 TSRKDQKQ 444
S
Sbjct: 230 ASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 6e-06
Identities = 45/215 (20%), Positives = 89/215 (41%), Gaps = 45/215 (20%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
LNG++ + G L A++G G GK++L+ L K G++ I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 915 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
++ Y Q ++ ++ E++L+ + + + V++ L P ++
Sbjct: 68 VA-YVPQ----QAWIQNDSLRENILFG----------CQLEEPYYRSVIQACALLPDLEI 112
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV- 1023
L +G GV+ LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 113 LPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVI 171
Query: 1024 -RNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +T + H + D + +M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 9e-07
Identities = 55/299 (18%), Positives = 99/299 (33%), Gaps = 108/299 (36%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM---GEF 222
+L D+S + PG + ++G GKTTLL LAG SG ++ +G +
Sbjct: 18 PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTN 74
Query: 223 VP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
+P ER Y+ Q H +TV +A+ + + +R
Sbjct: 75 LPVRERRLGYLVQEGVLFPH------LTVYRNIAYGLGNGKGRTA-----QERQRIEAM- 122
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
L++ G+ A +SGG+++R
Sbjct: 123 ----------------------------LELTGISELA-----GRYPHELSGGQQQRA-- 147
Query: 335 GEMMVGPALA---------LFMDEISTGLD----SSTTFQIVNCLKQHVHINSGTAVISL 381
ALA + +DE + LD ++ L+ +G + + +
Sbjct: 148 -------ALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRA-----NGKSAVFV 195
Query: 382 LQPAPETYD------LFDDIILLSDGQIVYQG-PRELVLEFFESMGFKCPKRKGVADFL 433
++D D I ++ G+I+ P EL ++ P A F+
Sbjct: 196 ------SHDREEALQYADRIAVMKQGRILQTASPHEL---------YRQPADLDAALFI 239
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 5e-06
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 25/168 (14%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S + PG + ++G SG GKTTL+ L+G + G I+ TI
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 914 RISGYCEQNDIHS--PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
R GY Q P +TVY ++ Y R + ++EL
Sbjct: 80 RRLGYLVQE--GVLFPHLTVYRNIAYGLGNGKGRTAQERQR------IEAMLEL------ 125
Query: 972 LVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
G+ ++G LS Q++R +A L +P +I +DEP S LD +
Sbjct: 126 -TGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 42/213 (19%), Positives = 87/213 (40%), Gaps = 44/213 (20%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 915 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
IS +C Q + ++ T+ E+++ ++ D V++ +L+ I
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEY----RYRSVIKACQLEEDISK 144
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 145 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 203
Query: 1025 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +T + + ++ D++ ++ G
Sbjct: 204 CKLMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 116/278 (41%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ ++ I T++E + +G Y+
Sbjct: 100 RISFCSQ-NSWIMPGTIKENI--------IGVSYD------------------------- 125
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
Y V ++ C + ++G+ GI SGG+R R+
Sbjct: 126 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 168
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVI-- 379
+LA L LD T +I +C+ + + + I
Sbjct: 169 ---------SLARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLM---ANKTRILV 215
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV 412
L+ A D I++L +G + G EL
Sbjct: 216 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQ 246
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 8/89 (8%)
Query: 981 LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
LS +R L +A L S++ +DEPT LD ++ + + V+
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 1035 CTIHQPGIDIFDAFDELFLMKRGGQEIYV 1063
H ++ DA D + + V
Sbjct: 309 LVSHDE--ELKDAADHVIRISLENGSSKV 335
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 53/288 (18%), Positives = 98/288 (34%), Gaps = 118/288 (40%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LKD++ I+ G++ + G +GKT+LL+ + G+L+ G++ ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ + I T++E + F G Y+
Sbjct: 70 RISFCSQF-SWIMPGTIKENIIF-------GVSYD------------------------- 96
Query: 287 AIATEGQEANVITDYYLKVLGLEVCA------------DTMVGDEMIRGI--SGGERKRV 332
Y V ++ C + ++G+ GI SGG+R R+
Sbjct: 97 ------------EYRYRSV--IKACQLEEDISKFAEKDNIVLGE---GGITLSGGQRARI 139
Query: 333 TTGEMMVGPALA----------LFMDEISTGLDSSTTFQIV-NCLKQHVHINSGTAVI-- 379
+LA L LD T +I +C+ + + I
Sbjct: 140 ---------SLARAVYKDADLYLLDSPFGY-LDVLTEKEIFESCVCKLMA---NKTRILV 186
Query: 380 ----SLLQPAPETYDLFDDIILLSDGQIVYQGP-RELV---LEFFESM 419
L+ A D I++L +G + G EL +F +
Sbjct: 187 TSKMEHLKKA-------DKILILHEGSSYFYGTFSELQNLQPDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 5e-06
Identities = 41/213 (19%), Positives = 85/213 (39%), Gaps = 43/213 (20%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L ++ G L A+ G +GAGKT+L+ ++ G + G I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 915 ISGYCEQNDIHSPFV---TVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
IS +C Q ++ T+ E++++ + V++ +L+ I
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIF----------GVSYDEYRYRSVIKACQLEEDISK 115
Query: 972 L-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1024
+G G++ LS QR R+++A + + + +D P LD + +
Sbjct: 116 FAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCV 174
Query: 1025 NTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
+ +T + + ++ D++ ++ G
Sbjct: 175 CKLMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-06
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 28/174 (16%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYI-------TGNITIS 903
K+V L+ ++ G ++G SGAGKTT M +++G + G + N +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 904 GYPKKQET---FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
P+ ++ F Q P +T +E++ + + + R +EEV
Sbjct: 77 VPPEDRKIGMVF--------QTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVA 125
Query: 961 ELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+++++ + L P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 126 KILDIHHV---LNHFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 7e-05
Identities = 38/196 (19%), Positives = 67/196 (34%), Gaps = 60/196 (30%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM----GE 221
L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKL 75
Query: 222 FVP--ERTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEA 273
VP +R + Q + +T E +AF + E+ +R E
Sbjct: 76 IVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKMSK-----EEIRKRVEEV 124
Query: 274 GIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVT 333
K+L + V + R +SG +++RV
Sbjct: 125 -----------------------------AKILDIH-----HVLNHFPRELSGAQQQRVA 150
Query: 334 TGEMMVGPALALFMDE 349
+V L +DE
Sbjct: 151 LARALVKDPSLLLLDE 166
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 3e-05
Identities = 43/200 (21%), Positives = 71/200 (35%), Gaps = 76/200 (38%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + PE
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPE 70
Query: 226 -RTAAYISQ------HDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPD 278
A++ Q H M V++ L F R + + + +R +
Sbjct: 71 KHDIAFVYQNYSLFPH------MNVKKNLEFGMRMKKI--------KDPKRVLDT----- 111
Query: 279 PDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMM 338
+ L +E + D +SGGE++RV
Sbjct: 112 ------------------------ARDLKIE-----HLLDRNPLTLSGGEQQRV------ 136
Query: 339 VGPALA---------LFMDE 349
ALA L +DE
Sbjct: 137 ---ALARALVTNPKILLLDE 153
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 4e-05
Identities = 37/167 (22%), Positives = 72/167 (43%), Gaps = 30/167 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L+ LS G ++G +GAGKT +++++G G I ++ ++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEE-VMELVELKPLIQSL 972
+ QN P + V ++L + +R+ +K+ + V++
Sbjct: 72 HDIAFVYQNYSLFPHMNVKKNLEFG--MRM--------KKIKDPKRVLDTARD------- 114
Query: 973 VGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ + + LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 115 LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 8e-05
Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 65/212 (30%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLM-------DVLSGRKTGGYITGNITIS 903
+ K +L ++ +PG AL+G +G+GKTT++ DV G+ I +
Sbjct: 366 KKKP-VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ---------ILVD 415
Query: 904 GYPKKQETFARISGYCEQNDIHSPF--V---------TVYESLLYSAWLRLPPEVDSETR 952
G ++ ++ + S V TV E+L Y P E
Sbjct: 416 GIDIRKIK---------RSSLRSSIGIVLQDTILFSTTVKENLKYGN-----PGATDEE- 460
Query: 953 KMFIEEVMELVELKPLIQSLVGLPG---------VSGLSTEQRKRLTIAVELVANPSIIF 1003
I+E +L I+ L P LS QR+ L I +ANP I+
Sbjct: 461 ---IKEAAKLTHSDHFIKHL---PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILI 514
Query: 1004 MDEPTSGLDARAAAIV---MRTVRNTVDTGRT 1032
+DE TS +D + + M + G+T
Sbjct: 515 LDEATSNVDTKTEKSIQAAMWKLM----EGKT 542
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 11/81 (13%)
Query: 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFD 1046
RL +++ L S++ +DEPT LD ++ + + V+ H ++ D
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1047 AFDELFLMKRGGQEIYVGPLG 1067
A D + I +
Sbjct: 128 AADHV---------IRISLEN 139
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 47/163 (28%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 872 LMGVSGAGKTTLMDVLSGRKTGGYIT-GNITISGY------PKKQET---FARISGYCEQ 921
L+G SG+GK+TL+ ++G T G I PK + F Q
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPKDRNVGLVF--------Q 82
Query: 922 NDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981
N P +TVY+++ + LR P + + + + EV +++ + L L P L
Sbjct: 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKL---LNRYP--WQL 134
Query: 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1022
S Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 135 SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 44/204 (21%), Positives = 84/204 (41%), Gaps = 36/204 (17%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP-KKQETFARI 915
L G+S R G + +++G SG+GK+T + ++ + G I ++G
Sbjct: 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQ 79
Query: 916 SGYCEQNDIHS---------------PFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVM 960
++N + +TV E+++ + P +V ++ E +
Sbjct: 80 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134
Query: 961 ELVELKPLIQSLVGLPGV------SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1014
+ + VG+ LS Q++R++IA L P ++ DEPTS LD
Sbjct: 135 KYLAK-------VGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 1015 AAAIVMRTVRNTVDTGRTVVCTIH 1038
V+R ++ + G+T+V H
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTH 211
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1426 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-24 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 4e-20 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 6e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-17 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-25 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-16 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 7e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-19 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 3e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-21 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 3e-19 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-18 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-18 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 6e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-16 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-18 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-18 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-14 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 8e-18 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 5e-17 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 5e-04 | |
| d1np6a_ | 170 | c.37.1.10 (A:) Molybdopterin-guanine dinucleotide | 6e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 0.002 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 0.003 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (276), Expect = 2e-27
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
L+G+S + G +T ++G +G+GK+TL++V++G + G + + E +
Sbjct: 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 79
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
Q +TV E+LL ++S K +I + E+VE I +
Sbjct: 80 GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLK 139
Query: 975 LPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
L LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 140 LSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK 199
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T + H+ + + D L++M G
Sbjct: 200 GITFLIIEHRLD-IVLNYIDHLYVMFNG 226
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 100 bits (249), Expect = 9e-24
Identities = 56/254 (22%), Positives = 90/254 (35%), Gaps = 35/254 (13%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
L VS + G +TL++GP SGK+TL+ + G L + GRV + D+ P
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEP 73
Query: 225 E----RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPD 280
Q + EMTV E L C G L + + E
Sbjct: 74 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE-------- 125
Query: 281 IDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVG 340
E L+ L L D G+ +SGG+ K V G ++
Sbjct: 126 -------------EMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMT 167
Query: 341 PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400
+ MDE G+ I N + + G + + + D + ++ +
Sbjct: 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVLNYIDHLYVMFN 225
Query: 401 GQIVYQGPRELVLE 414
GQI+ +G E ++
Sbjct: 226 GQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (273), Expect = 4e-27
Identities = 51/216 (23%), Positives = 100/216 (46%), Gaps = 12/216 (5%)
Query: 848 GVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISG 904
+ E+ + L ++ + G ++MG SG+GK+T+++++ + T G + NI +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71
Query: 905 YPKKQETFARIS--GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
+ T R G+ Q P +T E++ + + E R+ E +++
Sbjct: 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM 131
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
EL+ + + LS Q++R+ IA L NP II D+PT LD++ +M+
Sbjct: 132 AELEERFANHK----PNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQL 187
Query: 1023 VRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + G+TVV H I++ + + +K G
Sbjct: 188 LKKLNEEDGKTVVVVTHD--INVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 88.7 bits (220), Expect = 4e-20
Identities = 47/257 (18%), Positives = 90/257 (35%), Gaps = 47/257 (18%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
++ + LK+V+ IK G ++GP SGK+T+L + + G V +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 219 MGEFVPERTA-------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARREN 271
+ + ++ Q N I +T E + + G+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAM------------ 116
Query: 272 EAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKR 331
G+E LK+ LE + +SGG+++R
Sbjct: 117 -------------------SGEERRKRALECLKMAELE----ERFANHKPNQLSGGQQQR 153
Query: 332 VTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDL 391
V + + D+ + LDS T +I+ LK+ ++ G V+ ++
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK-LNEEDGKTVV-VVTHDINVARF 211
Query: 392 FDDIILLSDGQIVYQGP 408
+ II L DG++ +
Sbjct: 212 GERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (272), Expect = 6e-27
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 11/203 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQETFAR 914
+ G+ G + L+G +GAGKTT + ++G R G I N
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRM 81
Query: 915 ISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVG 974
+ P +TVYE+L+ A+ R E ++ LK ++ L G
Sbjct: 82 GIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQLGG 138
Query: 975 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1034
LS +++ L I L++ P ++ MDEP+ GL + V ++ G T++
Sbjct: 139 -----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1035 CTIHQPGIDIFDAFDELFLMKRG 1057
++++ G
Sbjct: 194 LVEQNAL-GALKVAHYGYVLETG 215
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 81.5 bits (201), Expect = 1e-17
Identities = 46/251 (18%), Positives = 86/251 (34%), Gaps = 42/251 (16%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLD-SSLKVSGRVTYNGHDMGEFV 223
+ +K + + G++ L+G +GKTT L A+AG + K+ + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
A + + E+TV E L A + + R
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE------GIKRDLEWI---------- 122
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+ L+ + G +SGGE++ + G ++
Sbjct: 123 ------------------FSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE S GL ++ +++ GT ++ + Q A + +L GQI
Sbjct: 160 LLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQNALGALKVAHYGYVLETGQI 217
Query: 404 VYQGPRELVLE 414
V +G +L+
Sbjct: 218 VLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (270), Expect = 1e-26
Identities = 56/270 (20%), Positives = 97/270 (35%), Gaps = 52/270 (19%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
T + ++ IK G +LLGP GKTT L +AG + + GR+ + D+ P
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPP 75
Query: 225 E-RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ R + + Q MTV E +AF + +
Sbjct: 76 KDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD------------------------ 111
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
E + + ++L +E + +SGG+R+RV +V
Sbjct: 112 ----------EIDKRVRWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEPD 156
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L MDE + LD+ + +K+ + I + E + D I +++ GQ+
Sbjct: 157 VLLMDEPLSNLDAKLRVAMRAEIKK-LQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQL 215
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P VA F+
Sbjct: 216 LQIGSPT---EVYLR-----PNSVFVATFI 237
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 104 bits (261), Expect = 2e-25
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 17/210 (8%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
+N L+ + G L+G SG GKTT + +++G T G I
Sbjct: 17 GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG----RIYFGDRDVTY 72
Query: 910 -ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R Q+ P +TVYE++ + ++ + + + EL++++ L
Sbjct: 73 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEEL 129
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TV 1027
+ + LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 130 LNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ 184
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
T + H + D + +M RG
Sbjct: 185 KLKVTTIYVTHDQV-EAMTMGDRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 98.8 bits (246), Expect = 6e-24
Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 17/188 (9%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
DK VL ++ G + G +G GKTTL+ +S + G I +G P +
Sbjct: 13 DKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK-- 67
Query: 912 FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQS 971
+ + I ++V + L A L K I + +E VE+ L +
Sbjct: 68 VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLDLKKK 122
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1030
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G
Sbjct: 123 ------LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG 176
Query: 1031 RTVVCTIH 1038
++ +
Sbjct: 177 IVIISSRE 184
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 76.5 bits (188), Expect = 3e-16
Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 48/215 (22%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
+L+ ++ I+ G + GP GKTTLL ++ L G + YNG + + +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 226 RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYM 285
++ + +++V + L A GV + +
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------------- 110
Query: 286 KAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALAL 345
L+ + + + +S G +RV ++ A
Sbjct: 111 -----------------LESVEVLDLKK------KLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 346 FMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVIS 380
+D+ +D + +++ + + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIIS 181
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 100 bits (250), Expect = 7e-24
Identities = 46/215 (21%), Positives = 88/215 (40%), Gaps = 21/215 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L G+S R G + +++G SG+GK+T + ++ + + G I I+ K
Sbjct: 18 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 77
Query: 914 RIS-----------GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMEL 962
Q+ +TV E+++ A +++ + R+ + +
Sbjct: 78 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME-APIQVLGLSKHDARER-ALKYLAK 135
Query: 963 VELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1022
V + Q LS Q++R++IA L P ++ DEPTS LD V+R
Sbjct: 136 VGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRI 191
Query: 1023 VRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
++ + G+T+V H+ G + + +G
Sbjct: 192 MQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 88.0 bits (218), Expect = 1e-19
Identities = 50/286 (17%), Positives = 98/286 (34%), Gaps = 66/286 (23%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
+LK VS + G + ++G SGK+T L + S G + NG ++
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRD 71
Query: 225 E----------------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELAR 268
+ + QH N MTV E + + S+++
Sbjct: 72 KDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHD------- 124
Query: 269 RENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328
+ A + YL +G++ A + +SGG+
Sbjct: 125 ----------------ARERALK----------YLAKVGIDERAQ----GKYPVHLSGGQ 154
Query: 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388
++RV+ + L DE ++ LD +++ ++Q G ++ +
Sbjct: 155 QQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EGKTMVVVTHEMGFA 212
Query: 389 YDLFDDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFLQ 434
+ +I L G+I +G E + F + P+ + FL+
Sbjct: 213 RHVSSHVIFLHQGKIEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 99.7 bits (248), Expect = 9e-24
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQ 909
K +L G+S G + L+G +GAGKTT + ++S + + G +T + ++
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 910 ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
++ Y + + E L + A S + +E E+ L I
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKI 127
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
+ V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ + H ++ D + L+ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHNG 209
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 90.8 bits (225), Expect = 9e-21
Identities = 58/276 (21%), Positives = 95/276 (34%), Gaps = 56/276 (20%)
Query: 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP 224
ILK +S I+ G + L+GP +GKTT L ++ + S SG VT G ++ E
Sbjct: 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPH 71
Query: 225 E--RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
E + +Y+ + M E L F A S
Sbjct: 72 EVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS----------------------- 108
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
E + + ++ GL V S G +++ ++
Sbjct: 109 -----------EIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNP 152
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE ++GLD ++ LKQ G ++ E L D I L+ +G
Sbjct: 153 RLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFLCDRIALIHNGT 210
Query: 403 IVYQG-PRELVLEFFESMGFKCPKRKGVADFLQEVT 437
IV G EL + K + + + +EV
Sbjct: 211 IVETGTVEEL---------KERYKAQNIEEVFEEVV 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 98.8 bits (246), Expect = 2e-23
Identities = 51/206 (24%), Positives = 93/206 (45%), Gaps = 14/206 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
LN +S G + ++G SGAGK+TL+ ++ R T G + ++ + + T A
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80
Query: 914 RIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
R G Q+ TV+ ++ L P+ + + R + E++ LV L S
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELLSLVGLGDKHDSY 137
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGR 1031
S LS Q++R+ IA L +NP ++ DE TS LD ++ +++ G
Sbjct: 138 P-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGL 192
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
T++ H+ + + D + ++ G
Sbjct: 193 TILLITHEMDV-VKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 52/280 (18%), Positives = 95/280 (33%), Gaps = 57/280 (20%)
Query: 159 PSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218
+ + L +VS + G++ ++G +GK+TL+ + + G V +G +
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 219 MGEFVPERTA------AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENE 272
+ I QH N + TV +A E+ RR E
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-----EVKRRVTE 123
Query: 273 AGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRV 332
L ++GL D+ + +SGG+++RV
Sbjct: 124 L-----------------------------LSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 333 TTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLF 392
+ L DE ++ LD +TT I+ LK G ++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINR-RLGLTILLITHEMDVVKRIC 208
Query: 393 DDIILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADF 432
D + ++S+G+++ Q E F PK F
Sbjct: 209 DCVAVISNGELIEQDTVS---EVFSH-----PKTPLAQKF 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 99.2 bits (247), Expect = 3e-23
Identities = 37/201 (18%), Positives = 82/201 (40%), Gaps = 19/201 (9%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARIS 916
L ++ G + A+ G +G+GKT+L+ ++ G G I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 917 GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLP 976
+C Q P T+ E++++ E ++ + ++ + +++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1036
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1037 IHQPGIDIFDAFDELFLMKRG 1057
+ ++ D++ ++ +G
Sbjct: 215 TSK--MEHLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 93.4 bits (232), Expect = 3e-21
Identities = 49/281 (17%), Positives = 95/281 (33%), Gaps = 60/281 (21%)
Query: 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
+LK+++ I+ G M + G SGKT+LL+ + G+L++S G + ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGRV-------- 99
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
++ SQ + I T++E + F + +
Sbjct: 100 --SFCSQ-FSWIMPGTIKENIIFGVSYDE-----YRYKSVVKACQLQ------------- 138
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ +T++G+ + +SGG+R R++ + A
Sbjct: 139 ----------------QDITKFAEQDNTVLGEGGVT-LSGGQRARISLARAVYKDADLYL 181
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+D LD T Q+ + N +++ E D I++L G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTS---KMEHLRKADKILILHQGSSYFY 238
Query: 407 G-PREL-------VLEFFESMGFKCPKRKGVADFLQEVTSR 439
G EL + F + + L E R
Sbjct: 239 GTFSELQSLRPDFSSKLMGYDTFDQFTEERRSSILTETLRR 279
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 98.3 bits (245), Expect = 3e-23
Identities = 53/270 (19%), Positives = 100/270 (37%), Gaps = 50/270 (18%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
+ + F Y + ILKD++ I+ G +G GK+TL+ + D +
Sbjct: 19 IDHVSFQY----NDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT- 71
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLT 264
SG++ +GH++ +F+ I Q DN + TV+E + G
Sbjct: 72 --SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDE 122
Query: 265 ELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324
E+ A ++ L DT VG E +
Sbjct: 123 EVVEAAKMANAHDF--------------------------IMNLPQGYDTEVG-ERGVKL 155
Query: 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQP 384
SGG+++R++ + + L +DE ++ LD + I L ++ + ++
Sbjct: 156 SGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV---LSKDRTTL-IVAH 211
Query: 385 APETYDLFDDIILLSDGQIVYQGPRELVLE 414
T D I+++ +G IV G ++
Sbjct: 212 RLSTITHADKIVVIENGHIVETGTHRELIA 241
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.1 bits (234), Expect = 1e-21
Identities = 53/244 (21%), Positives = 100/244 (40%), Gaps = 33/244 (13%)
Query: 822 LPFEPHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKT 881
+ + + D V + + +++ +L ++ + G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSFQYN-----------DNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 882 TLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTVYESLLYSA 939
TL++++ +G I I G+ K + Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLG- 115
Query: 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSL-VGLPGVSG-----LSTEQRKRLTIAV 993
P D E + E ++ I +L G G LS Q++RL+IA
Sbjct: 116 ---RPTATDEE-----VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIAR 167
Query: 994 ELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053
+ NP I+ +DE TS LD + +I+ + + RT + H+ + D++ +
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHR--LSTITHADKIVV 224
Query: 1054 MKRG 1057
++ G
Sbjct: 225 IENG 228
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (238), Expect = 2e-22
Identities = 53/271 (19%), Positives = 109/271 (40%), Gaps = 48/271 (17%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F+D+ F Y P+R +L+ ++ ++PG +T L+GP SGK+T+ L +
Sbjct: 14 FQDVSFAY----PNRPDV-LVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT- 67
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
G++ +G + ++ R A + Q + + +++E +A+
Sbjct: 68 --GGQLLLDGKPLPQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY-------------- 110
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
G+ P ++ A G + GL DT V + +
Sbjct: 111 ----------GLTQKPTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ- 151
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+R+ V ++ L +D+ ++ LD+++ Q+ L + S + ++
Sbjct: 152 LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
+ D I+ L G I G + ++E
Sbjct: 212 --LSLVEQADHILFLEGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (214), Expect = 3e-19
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 11/205 (5%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L GL+ RPG +TAL+G +G+GK+T+ +L + TGG + + Y +
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY--LH 87
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
R Q ++ E++ Y L P ++ T + P
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAY--GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE 144
Query: 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRT 1032
S LS QR+ + +A L+ P ++ +D+ TS LDA + V + + + + R+
Sbjct: 145 VDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
V+ + + A D + ++ G
Sbjct: 205 VLLITQHLSL-VEQA-DHILFLEGG 227
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 95.3 bits (237), Expect = 3e-22
Identities = 40/205 (19%), Positives = 83/205 (40%), Gaps = 13/205 (6%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQ---ETFA 913
L ++ G AL+G SG+GK+T+ +++ G+I + G+ ++ +
Sbjct: 31 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLR 88
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQSL 972
QN +++ R + M+ + + ++
Sbjct: 89 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAAR---MAYAMDFINKMDNGLDTI 145
Query: 973 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1032
+G G LS QR+R+ IA L+ + I+ +DE TS LD + + + + RT
Sbjct: 146 IGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE-LQKNRT 203
Query: 1033 VVCTIHQPGIDIFDAFDELFLMKRG 1057
+ H+ + + DE+ +++ G
Sbjct: 204 SLVIAHR--LSTIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 86.1 bits (213), Expect = 5e-19
Identities = 51/268 (19%), Positives = 101/268 (37%), Gaps = 45/268 (16%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F ++ F Y P R+ L++++ I G+ L+G SGK+T+ + D
Sbjct: 16 FRNVTFTY----PGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID- 68
Query: 207 KVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTEL 266
G + +GHD+ E+ ++ V L +
Sbjct: 69 --EGHILMDGHDLREYTLASLRNQVAL----------------------VSQNVHLFNDT 104
Query: 267 ARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISG 326
+ + +A + A + GL DT++G E +SG
Sbjct: 105 VANNIAYARTEEYSREQIEEAA----RMAYAMDFINKMDNGL----DTIIG-ENGVLLSG 155
Query: 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAP 386
G+R+R+ ++ + L +DE ++ LD+ + I L + + + ++
Sbjct: 156 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE---LQKNRTSL-VIAHRL 211
Query: 387 ETYDLFDDIILLSDGQIVYQGPRELVLE 414
T + D+I+++ DG IV +G +L
Sbjct: 212 STIEQADEIVVVEDGIIVERGTHSELLA 239
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.5 bits (232), Expect = 8e-22
Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 27/211 (12%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---KKQETFA 913
L LSG R G + L+G +GAGK+TL+ ++G +G G+I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLV 973
Y Q V+ L + TR + +V + L +
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRST 123
Query: 974 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1027 VDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G +V + H +L+K G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKGG 208
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 83.1 bits (205), Expect = 4e-18
Identities = 49/259 (18%), Positives = 80/259 (30%), Gaps = 60/259 (23%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
T L +SG ++ G + L+GP +GK+TLL +AG G + + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG----KGSIQFAGQPLEAWSAT 68
Query: 226 RTA---AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
+ A AY+SQ V L
Sbjct: 69 KLALHRAYLSQQQTPPFATPVWHYLTLHQH------------------------------ 98
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
+ + + L L+ +SGGE +RV +++
Sbjct: 99 ---------DKTRTELLNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 144
Query: 343 LA-------LFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395
L +DE LD + + L G A++ T
Sbjct: 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLRHAHRA 202
Query: 396 ILLSDGQIVYQGPRELVLE 414
LL G+++ G RE VL
Sbjct: 203 WLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 4e-21
Identities = 48/210 (22%), Positives = 93/210 (44%), Gaps = 12/210 (5%)
Query: 851 EDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP---K 907
D V+L+ ++ + + G + ++G SG+GK+TL ++ + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLALA 70
Query: 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP 967
R G Q D ++ +++ + +V + + + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAK---LAGAHDFISELR 126
Query: 968 LIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1027
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + +
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK-I 185
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
GRTV+ H+ + +A D + +M++G
Sbjct: 186 CKGRTVIIIAHRLST-VKNA-DRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 83.0 bits (205), Expect = 4e-18
Identities = 57/271 (21%), Positives = 100/271 (36%), Gaps = 52/271 (19%)
Query: 148 FEDI-FNYLGILPSRKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSL 206
F +I F Y + IL +++ IK G + ++G SGK+TL +
Sbjct: 4 FRNIRFRY------KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE- 56
Query: 207 KVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELL 263
+G+V +GHD+ P R + Q DN + ++ + ++
Sbjct: 57 --NGQVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISL-------------- 99
Query: 264 TELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323
+P + V A + A + + E G
Sbjct: 100 -------------ANPGMSVEKVIYAAKLAGA-------HDFISELREGYNTIVGEQGAG 139
Query: 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQ 383
+SGG+R+R+ +V L DE ++ LD + I+ + + I G VI +
Sbjct: 140 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK---ICKGRTVIIIAH 196
Query: 384 PAPETYDLFDDIILLSDGQIVYQGPRELVLE 414
T D II++ G+IV QG + +L
Sbjct: 197 -RLSTVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 88.5 bits (219), Expect = 6e-20
Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 13/208 (6%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQET 911
++V+ ++ G +G SG GK+TL+ +++G +T + I
Sbjct: 11 GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTP 68
Query: 912 FARIS-GYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQ 970
A G Q+ P ++V E++ + L + R + +V E+++L L+
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLD 125
Query: 971 SLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DT 1029
LS QR+R+ I LVA PS+ +DEP S LDA + +
Sbjct: 126 RK-----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 180
Query: 1030 GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
GRT++ H D++ ++ G
Sbjct: 181 GRTMIYVTHDQVE-AMTLADKIVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 82.3 bits (203), Expect = 7e-18
Identities = 53/271 (19%), Positives = 91/271 (33%), Gaps = 52/271 (19%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+ + KD++ I G + +GP GK+TLL +AG + SG + M +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 224 PERTA-AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDID 282
P + Q ++V E ++F + G
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE----------------------- 105
Query: 283 VYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPA 342
N + +VL L D +SGG+R+RV G +V
Sbjct: 106 -----------VINQRVNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 343 LALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402
+DE + LD++ Q+ + + T + E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 403 IVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ G E + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 83.8 bits (207), Expect = 2e-18
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 15/212 (7%)
Query: 852 DKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKK 908
++ + +S + G L+G SG GKTT + +++G + G I G+ ++ K
Sbjct: 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKG 73
Query: 909 QETFARISG--YCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK 966
+ Q+ P +TVY+++ + LR P + + R + EV EL+ L
Sbjct: 74 IFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLT 130
Query: 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026
L+ LS QR+R+ + +V P + MDEP S LDA+ + ++
Sbjct: 131 ELLNR-----KPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL 185
Query: 1027 V-DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T + H + D + +M RG
Sbjct: 186 QRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRG 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.3 bits (190), Expect = 3e-16
Identities = 52/270 (19%), Positives = 95/270 (35%), Gaps = 44/270 (16%)
Query: 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV 223
+T ++++S +K G +LLGP GKTT L +AG + S G++ + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 224 PERTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ + + Y L + +N I
Sbjct: 72 KGIFVPPKDRDIAMVFQS------------------YALYPHMTVYDN---------IAF 104
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+K QE + ++LGL + + +SGG+R+RV G +V
Sbjct: 105 PLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
MDE + LD + + + + G I + E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVL 218
Query: 404 VYQGPRELVLEFFESMGFKCPKRKGVADFL 433
G + E ++ P VA F+
Sbjct: 219 QQVGSPD---EVYDK-----PANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.8 bits (207), Expect = 3e-18
Identities = 51/251 (20%), Positives = 84/251 (33%), Gaps = 42/251 (16%)
Query: 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE 225
IL+D+S +P + GP GK+T+ L + +G +T +G + E
Sbjct: 16 QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLE 72
Query: 226 RTAAYIS--QHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDV 283
+ I D+ I T+RE L + + +LA + PD
Sbjct: 73 NWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL--- 129
Query: 284 YMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPAL 343
+T VG E ISGG+R+R+ +
Sbjct: 130 -----------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRNPK 159
Query: 344 ALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403
L +DE + LDS + + L + G + + T D I + GQI
Sbjct: 160 ILMLDEATASLDSESESMVQKALDS---LMKGRTTLVIAH-RLSTIVDADKIYFIEKGQI 215
Query: 404 VYQGPRELVLE 414
G ++
Sbjct: 216 TGSGKHNELVA 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 83.0 bits (205), Expect = 4e-18
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 15/206 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFA 913
L +S +P + A G SG GK+T+ +L + T G IT I + +
Sbjct: 18 LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLEN--WR 75
Query: 914 RISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEV--MELVELKPLIQS 971
G+ Q+ T+ E+L Y L + E ++ VE P +
Sbjct: 76 SQIGFVSQDSAIMAG-TIRENLTY----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLN 130
Query: 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1031
+S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + + GR
Sbjct: 131 TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-LMKGR 189
Query: 1032 TVVCTIHQPGIDIFDAFDELFLMKRG 1057
T + H+ I DA D+++ +++G
Sbjct: 190 TTLVIAHRLST-IVDA-DKIYFIEKG 213
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 82.0 bits (202), Expect = 7e-18
Identities = 59/267 (22%), Positives = 103/267 (38%), Gaps = 55/267 (20%)
Query: 168 LKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER- 226
L ++S ++ G ++LGP +GKT L +AG SGR+ +G D+ + PE+
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 227 TAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMK 286
A++ Q+ + M V++ L F R + + +R +
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT------------- 111
Query: 287 AIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALF 346
+ L +E D +SGGE++RV +V L
Sbjct: 112 ----------------ARDLKIEHLL-----DRNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 347 MDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQ 406
+DE + LD T + + +H + V+ + E + D I ++ DG+++
Sbjct: 151 LDEPLSALD-PRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 407 GPRELVLEFFESMGFKCPKRKGVADFL 433
G E E FE P VA F+
Sbjct: 210 GKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 4e-14
Identities = 42/203 (20%), Positives = 77/203 (37%), Gaps = 16/203 (7%)
Query: 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISG-YPKKQETFARI 915
L+ LS G ++G +GAGKT +++++G I + G
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 916 SGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGL 975
+ QN P + V ++L + ++ + + V++ + L
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRN 124
Query: 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1034
P LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 P--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1035 CTIHQPGIDIFDAFDELFLMKRG 1057
H + D + ++ G
Sbjct: 183 HITHDQT-EARIMADRIAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 82.4 bits (203), Expect = 8e-18
Identities = 53/210 (25%), Positives = 97/210 (46%), Gaps = 14/210 (6%)
Query: 853 KLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG--RKTGGYITGNITISGYPKKQE 910
K+V L+ ++ G ++G SGAGKTT M +++G + G + + + K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 911 T--FARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL 968
R G Q P +T +E++ + ++ E + +EEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHV 133
Query: 969 IQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1027
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1028 DTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057
G T++ H P DIF D + ++ +G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 80.1 bits (197), Expect = 5e-17
Identities = 49/279 (17%), Positives = 96/279 (34%), Gaps = 57/279 (20%)
Query: 161 RKKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMG 220
+K + L +V+ I+ G +LGP +GKTT + +AG S +G + ++ +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 221 EFVPE------RTAAYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAG 274
R + Q +T E +AF +
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------------- 116
Query: 275 IKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTT 334
++ E K+L + + R +SG +++RV
Sbjct: 117 ----------IRKRVEE----------VAKILDIHHVLNHF-----PRELSGAQQQRVAL 151
Query: 335 GEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394
+V L +DE + LD+ +K+ T ++ PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 395 IILLSDGQIVYQGPRELVLEFFESMGFKCPKRKGVADFL 433
+ +L G++V G E + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 1e-14
Identities = 54/265 (20%), Positives = 90/265 (33%), Gaps = 56/265 (21%)
Query: 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTA- 228
+V +LLGP +GK+ L +AG + G V NG D+ PER
Sbjct: 17 NVD-FEMGRDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGI 72
Query: 229 AYISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAI 288
++ Q ++V +A+ R R + E+
Sbjct: 73 GFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREM---------------------- 110
Query: 289 ATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMD 348
E + D +SGGER+RV +V L +D
Sbjct: 111 -------------------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151
Query: 349 EISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408
E + +D T + + V ++ + E L D++ ++ +G+IV +G
Sbjct: 152 EPLSAVDLKTKGVL-MEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 409 RELVLEFFESMGFKCPKRKGVADFL 433
+ E F K VA+FL
Sbjct: 211 LK---ELFS------AKNGEVAEFL 226
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.1 bits (166), Expect = 6e-13
Identities = 48/234 (20%), Positives = 98/234 (41%), Gaps = 27/234 (11%)
Query: 866 PGVLTALMGVSGAGKTTLMDVLSG--RKTGGYIT-GNITISGYPKKQETFARISGYCEQN 922
L+G +GAGK+ +++++G + G + I+ P ++ R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 923 DIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982
P ++VY ++ Y V+ R + E+ E + + L+ + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPG 1041
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1042 IDIFDAFDELFLMKRGG-------QEIYVGPLGRHSCQLISYFEAIPGVEKIKD 1088
+ DE+ +M G +E++ + +S + V KI D
Sbjct: 189 -EAAMLADEVAVMLNGRIVEKGKLKELF-SAKNGEVAEFLSARNLLLKVSKILD 240
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.4 bits (106), Expect = 1e-05
Identities = 23/201 (11%), Positives = 45/201 (22%), Gaps = 42/201 (20%)
Query: 871 ALMGVSGAGKTTLMDVLSG---RKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSP 927
+ G G GKTTL+ + ++ G+ T + K+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 928 FVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987
+ + + + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNV----QYFEELAIPIL 88
Query: 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDA 1047
+I +DE + D VV TI +
Sbjct: 89 ERAYREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL-- 145
Query: 1048 FDELFLMKRGGQEIYVGPLGR 1068
E+ + G I + P R
Sbjct: 146 VKEIRRLP-GAVLIELTPENR 165
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 39.2 bits (90), Expect = 0.001
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 182 LLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGE 221
++ G P GKTTL+ + +L + E
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPE 40
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.9 bits (94), Expect = 5e-04
Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 7/186 (3%)
Query: 172 SGIIKPGRMTLLLGPPASGKTTLLL--ALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAA 229
G I+ G +T + G +GKT + A+ +L G F PER A
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 230 YISQHDNHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIA 289
++ ++ A + + + A + D +Y +
Sbjct: 77 VAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYS 136
Query: 290 TEGQEANVITDY-----YLKVLGLEVCADTMVGDEMIRGISGGERKRVTTGEMMVGPALA 344
G+ + L L E ++ ++++ + G + + G +A
Sbjct: 137 GRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIA 196
Query: 345 LFMDEI 350
Sbjct: 197 HASTTR 202
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (92), Expect = 6e-04
Identities = 16/137 (11%), Positives = 36/137 (26%), Gaps = 3/137 (2%)
Query: 185 GPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244
+GKTTLL L L + R H + ++ + T+
Sbjct: 9 AWSGTGKTTLLKKLIPALCAR---GIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIV 65
Query: 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLK 304
+ A EL + + ++ + + + +
Sbjct: 66 ASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPE 125
Query: 305 VLGLEVCADTMVGDEMI 321
L ++ + D +
Sbjct: 126 ELVIDRHVIAVASDVPL 142
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 0.001
Identities = 20/143 (13%), Positives = 40/143 (27%), Gaps = 19/143 (13%)
Query: 921 QNDIHSPFVTVYESLL-----------YSAWLRLPPEVDSETRKMFIEEVMELVELKPLI 969
+ + +Y L +A L + E + + L K +
Sbjct: 272 FDYVSDHLDAIYRELTKNPNSNVELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDME 331
Query: 970 QSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1029
G V+ L+ L A+ +DE + LD + +R +
Sbjct: 332 YLSGGEKTVAALA------LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNP 385
Query: 1030 GRTVVCTIHQPGIDIFDAFDELF 1052
+ + +F+ D L
Sbjct: 386 DLQFIVISLKNT--MFEKSDALV 406
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/102 (9%), Positives = 29/102 (28%), Gaps = 1/102 (0%)
Query: 871 ALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVT 930
+ G +GKT+L+ +L+ + + + + +
Sbjct: 7 IIAGPQNSGKTSLLTLLTTDSVRP-TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSD 65
Query: 931 VYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSL 972
++ + + K LV++ + +S
Sbjct: 66 YLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESS 107
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.4 bits (88), Expect = 0.003
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 179 RMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPER 226
R ++ GP +GK+TLL L + S S T GE +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKD 49
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 38.5 bits (88), Expect = 0.004
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKL-------DSSLKVSGRVTYNGHDM-GEF 222
+ ++ G + L+ P +GK+ L L LA ++ + +G V Y +
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 223 VPERTAAYISQHDNH 237
+ R A +
Sbjct: 82 IHHRLHALGAHLSAE 96
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1426 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.76 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.55 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.47 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.37 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.32 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.17 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.08 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.03 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.62 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.11 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.99 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.95 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.94 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.86 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.83 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.82 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 97.8 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.68 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.52 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.43 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.39 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.37 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.35 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.3 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.3 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.29 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 97.24 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.21 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.17 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.17 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 97.15 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.14 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.12 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.09 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.09 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.07 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.03 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.02 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.01 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.0 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.99 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.98 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.98 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.96 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.96 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.96 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.95 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.95 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.93 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.92 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.83 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.83 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.79 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.76 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.76 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.71 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.7 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.69 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.69 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.68 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.65 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.65 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.64 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.64 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.64 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.63 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.63 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.61 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.61 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.59 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.59 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.56 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.55 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.54 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.54 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.54 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.54 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.53 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.53 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.52 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.51 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.48 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.46 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.46 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.44 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.44 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.44 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.43 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.43 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.43 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.41 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.37 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.37 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.37 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.37 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.37 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.35 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.33 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.33 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.32 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 96.3 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.28 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.28 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.25 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.25 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.24 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.24 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.23 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.22 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.19 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.17 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.17 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.15 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 96.15 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.13 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.13 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.12 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.12 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.09 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.09 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.06 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.04 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.02 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.01 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.0 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.99 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.99 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.95 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.95 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.93 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.92 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.91 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.88 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.88 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.88 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.85 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.84 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.83 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.83 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.81 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.8 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.79 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.78 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.78 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.77 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.76 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.76 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.75 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.75 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.73 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.73 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.71 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.7 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.69 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.68 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.61 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.59 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.58 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.56 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 95.55 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.53 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.52 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.52 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 95.49 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.49 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.45 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 95.41 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 95.41 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.4 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.35 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.33 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.3 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.28 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 95.26 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.24 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.23 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.18 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.13 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.12 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.12 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.09 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.08 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 95.07 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.07 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 95.05 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.04 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.03 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.02 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.02 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 95.0 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.99 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.96 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.95 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.93 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.93 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.92 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.91 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.89 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 94.88 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.87 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.86 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.85 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.82 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 94.82 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.8 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.77 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.76 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.75 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.72 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.7 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.7 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.69 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.65 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.65 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.65 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.63 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.61 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.6 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.6 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.52 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.51 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.51 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.5 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.5 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.49 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.49 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.48 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.47 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.44 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.44 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.43 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 94.4 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.4 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.39 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.37 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.34 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.33 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 94.32 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.31 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.31 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.26 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.25 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.19 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.16 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.16 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 94.15 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.1 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 94.07 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.04 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.03 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.02 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.99 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.98 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.98 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.96 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.91 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 93.91 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.89 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.88 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.87 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.86 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.85 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.83 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 93.82 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.77 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.71 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.67 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.66 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.66 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.66 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.64 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.63 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.62 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.54 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.52 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.49 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 93.49 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.48 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.45 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.44 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.43 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.35 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.27 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.26 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.2 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.18 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.17 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.16 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.14 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.12 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.06 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.0 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.99 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.99 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.97 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.97 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.92 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.9 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.89 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.88 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.88 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.87 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.84 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.81 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.74 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.74 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.73 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.68 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.67 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.67 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.58 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.51 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.46 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.45 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.42 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.41 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.36 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 92.36 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.34 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 92.27 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 92.26 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.25 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.22 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.14 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.12 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.11 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.09 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.09 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.91 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 91.86 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.76 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.76 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.73 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.68 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.66 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.64 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.61 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 91.61 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.54 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.49 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.42 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 91.41 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.32 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.31 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.17 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.09 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.08 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 90.95 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.89 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.89 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.86 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.84 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.82 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.71 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.68 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.68 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.66 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.6 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.57 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.51 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.46 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.42 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.37 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.26 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.2 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.15 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.04 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.94 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.9 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.75 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.66 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 89.63 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.62 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.48 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.39 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 89.37 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.16 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.09 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.93 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.87 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 88.58 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 88.48 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 88.19 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 88.1 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 88.02 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 87.92 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.78 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 87.69 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.65 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 87.55 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.13 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.08 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.06 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.99 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 86.49 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.48 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.43 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.31 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.18 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 85.89 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.42 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 85.33 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 85.04 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 84.97 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 84.51 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 84.27 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.47 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 83.36 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 82.85 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 82.24 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 82.05 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 81.88 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 80.85 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=330.41 Aligned_cols=207 Identities=24% Similarity=0.354 Sum_probs=124.6
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 157413057894884999985999958999999964989999820099996840899876-5159996478888999999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP-ERTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~-~r~~aYV~Q~D~~~~~lTV 243 (1426)
+++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.+||.++.+..+ +|.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999854511788325676998998643099999996899999862223355899999999199432343334755666
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 rEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rg 323 (1426)
+||+.|+.++++.. + .+....++.+++.+||++.+|..+. .
T Consensus 90 ~eni~~~~~~~~~~----------~------------------------~~~~~~v~~~l~~~~l~~~~~~~~~-----~ 130 (232)
T d2awna2 90 AENMSFGLKLAGAK----------K------------------------EVINQRVNQVAEVLQLAHLLDRKPK-----A 130 (232)
T ss_dssp -------------------------------------------------CHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCC----------H------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----H
T ss_conf 88978999875998----------8------------------------9999999999975788656648965-----6
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEE
Q ss_conf 78667558999999715984748857998999898999999999977604985999994490048730594999629929
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~i 403 (1426)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+|+ ++|...++..++|+|++|.+|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIY-VTHDQVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999999999999703998899758887889889989999999998742987999-94899999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 99539666999
Q 000556 404 VYQGPRELVLE 414 (1426)
Q Consensus 404 vy~Gp~~~~~~ 414 (1426)
+++|+.+++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99808999973
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.02 Aligned_cols=214 Identities=25% Similarity=0.341 Sum_probs=156.2
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.+.++|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nl~k~yg-------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred CEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 189986999989-------------9999856066886998999999999809999999964878--8989899999980
Q ss_pred CCC-------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 811-------2242689960588889999999999998771299999988999999999999299421112236999888
Q 000556 908 KQE-------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSG 980 (1426)
Q Consensus 908 ~~~-------~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~g 980 (1426)
... ..++.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+ ..
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~ 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RE 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GG
T ss_pred CCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 3566444245322551200221222310116676330687729---998999999999998759966762993-----34
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8998999899999996299857882999999999999999999998738-988999944887789963066989916939
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 lSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~ 1059 (1426)
||||||||++||++|+.+|++|++||||+|||+.+...+++.++++.++ |.|||+++|+.. ++...+|++++|.+ |+
T Consensus 140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~ 217 (240)
T d1g2912 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GV 217 (240)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CE
T ss_conf 99999999999999826998898258876569899989999999998636988999959999-99996999999989-99
Q ss_pred EEEECCC
Q ss_conf 9997699
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~vy~Gp~ 1066 (1426)
++..|++
T Consensus 218 iv~~G~~ 224 (240)
T d1g2912 218 LQQVGSP 224 (240)
T ss_dssp EEEEECH
T ss_pred EEEECCH
T ss_conf 9998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=324.49 Aligned_cols=206 Identities=25% Similarity=0.356 Sum_probs=109.9
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCH
Q ss_conf 1574130578948849999859999589999999649899998200999968408998765-159996478888999999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTV 243 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~-r~~aYV~Q~D~~~~~lTV 243 (1426)
+.+|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. |.++||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999854511788325676998998643099999996899999862223355899999999199432343334755666
Q 000556 244 RETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRG 323 (1426)
Q Consensus 244 rEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rg 323 (1426)
+||+.|..++++... . +....++.+++.+||++.+|..+ ..
T Consensus 96 ~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~ 136 (239)
T d1v43a3 96 YENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYP-----AQ 136 (239)
T ss_dssp HHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHHCCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHCCCH-----HH
T ss_conf 999999998739999----------9------------------------99999999998759855660995-----46
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEE
Q ss_conf 78667558999999715984748857998999898999999999977604985999994490048730594999629929
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~i 403 (1426)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++.+..+.|+++ ++|...++..++|+|++|++|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~-vTHd~~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIY-VTHDQVEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEE
T ss_conf 99999889999766404998243068866689899989999999998731980799-94899999986999999989999
Q ss_pred EEECCHHHHH
Q ss_conf 9953966699
Q 000556 404 VYQGPRELVL 413 (1426)
Q Consensus 404 vy~Gp~~~~~ 413 (1426)
+.+|+.+++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
T ss_conf 9985999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=323.73 Aligned_cols=208 Identities=25% Similarity=0.355 Sum_probs=181.4
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC------C-CCEEEEECCCCC
Q ss_conf 515741305789488499998599995899999996498999982009999684089987------6-515999647888
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV------P-ERTAAYISQHDN 236 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~------~-~r~~aYV~Q~D~ 236 (1426)
...+|+|||+.+++|++++|+||||||||||+++|+|..+|+ +|+|.+||.++.... + ++.++||+|++.
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~ 91 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHH
T ss_conf 999985606688699899999999980999999996487889---89899999980356644424532255120022122
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999999999985451178832567699899864309999999689999986222335589999999919943234333
Q 000556 237 HIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMV 316 (1426)
Q Consensus 237 ~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~V 316 (1426)
+++.+||+||+.|..+.++... . +...+++.+++.+||++.+|..+
T Consensus 92 L~~~ltV~eni~~~~~~~~~~~----------~------------------------e~~~~v~~~l~~~~l~~~~~~~p 137 (240)
T d1g2912 92 LYPHMTVYDNIAFPLKLRKVPR----------Q------------------------EIDQRVREVAELLGLTELLNRKP 137 (240)
T ss_dssp CCTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCG
T ss_pred HCCHHHHHHHHHHHHHHCCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHCCCH
T ss_conf 2310116676330687729998----------9------------------------99999999998759966762993
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 47556667866755899999971598474885799899989899999999997760498599999449004873059499
Q 000556 317 GDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 317 G~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~Ii 396 (1426)
+ .|||||||||+||++|+.+|++++|||||+|||..++.+|.+.|+++.+..+.|+|+ ++|..+++..++|+|+
T Consensus 138 ~-----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHd~~~~~~~~drv~ 211 (240)
T d1g2912 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIY-VTHDQVEAMTMGDRIA 211 (240)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEE-EESCHHHHHHHCSEEE
T ss_pred H-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEE
T ss_conf 3-----499999999999999826998898258876569899989999999998636988999-9599999999699999
Q ss_pred EECCCEEEEECCHHHHHH
Q ss_conf 962992999539666999
Q 000556 397 LLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 397 lL~~G~ivy~Gp~~~~~~ 414 (1426)
+|.+|++++.|+.+++.+
T Consensus 212 vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 212 VMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EEETTEEEEEECHHHHHH
T ss_pred EEECCEEEEECCHHHHHH
T ss_conf 998999999859999982
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=326.79 Aligned_cols=214 Identities=22% Similarity=0.357 Sum_probs=192.2
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.|+.+|++.++. ...+|++||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~yg-------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 499987999999-------------9999813067887998999999999829999999975899--9878799916413
Q ss_pred CC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 81-12242689960588889999999999998771299999988999999999999299421112236999888899899
Q 000556 908 KQ-ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 908 ~~-~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqr 986 (1426)
.. ...+|.+|||+|+..++|.+||+|++.|.+.++ ..+.++.+++++++++.++|.+..|..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 9899999996299857882999999999999999999998738-988999944887789963066989916939999769
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGP 1065 (1426)
Q Consensus 987 kRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp 1065 (1426)
||++||++|+.+|+||+|||||+|||+.++..+++.++++.++ |.|||+++|++. ++.+.+|++++|++ |+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-99986999999989-99999859
Q ss_pred C
Q ss_conf 9
Q 000556 1066 L 1066 (1426)
Q Consensus 1066 ~ 1066 (1426)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=328.94 Aligned_cols=213 Identities=24% Similarity=0.368 Sum_probs=189.4
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
|+++|+++++. ...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 1 Iev~nv~k~yg-------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCT
T ss_pred CEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 99999999989-------------9999811177886998999998999829999999965878--88888999999778
Q ss_pred CC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22426899605888899999999999987712999999889999999999992994211122369998888998999
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 909 ~~-~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrk 987 (1426)
.. ..+|.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~-----~~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHH
T ss_conf 886444322234334202643337889789998759---988999999999997578865664896-----569999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89999999629985788299999999999999999999873-89889999448877899630669899169399997699
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 988 RlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~ 1066 (1426)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-99996999999979-999998089
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=321.15 Aligned_cols=219 Identities=22% Similarity=0.359 Sum_probs=187.6
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++|+++++.... ....+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~~---------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECC
T ss_conf 89990799948998---------20898713377884997999988999982165575068877--77662699999857
Q ss_pred CCC------C-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 112------2-4268996058888999999999999877129999998899999999999929942-1112236999888
Q 000556 909 QET------F-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKP-LIQSLVGLPGVSG 980 (1426)
Q Consensus 909 ~~~------~-~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vG~~~~~g 980 (1426)
... + ++.+|||.|+..++|.+||+|++.+....+.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCE
Q ss_conf 8998999899999996299857882999999999999999999998738-988999944887789963066989916939
Q 000556 981 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQ 1059 (1426)
Q Consensus 981 lSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~ 1059 (1426)
||||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|++. ....+|++++|.+ |+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~--~a~~~drv~~m~~-G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHH--HHTTSSEEEEEET-TE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHH--HHHHCCEEEEEEC-CE
T ss_conf 89999999998756522788899468765469899999999999999843999999878889--9986998999989-99
Q ss_pred EEEECCC
Q ss_conf 9997699
Q 000556 1060 EIYVGPL 1066 (1426)
Q Consensus 1060 ~vy~Gp~ 1066 (1426)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=324.25 Aligned_cols=216 Identities=26% Similarity=0.385 Sum_probs=139.7
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.++.+|++++++. +...+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~-----------g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKK-----------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGG-----------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEE
T ss_pred EEEEEEEEEEECC-----------CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEE
T ss_conf 8999757999889-----------99899804078987998999998999809999999975868--8874599999995
Q ss_pred CC------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 81------122426899605888899999999999987712999999889999999999992994211122369998888
Q 000556 908 KQ------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGL 981 (1426)
Q Consensus 908 ~~------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~gl 981 (1426)
.. ...++.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..|..+ ..|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p-----~~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----REL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCH-----HHC
T ss_conf 13731115312045147730433466665777766556761---3799999999999986659176664895-----459
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEE
Q ss_conf 998999899999996299857882999999999999999999998738-9889999448877899630669899169399
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQE 1060 (1426)
Q Consensus 982 SgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~ 1060 (1426)
|||||||++||++|+.+|++|++||||+|||+.+...+++.++++.++ |.|||+++|++. ++.+.+|++++|++ |++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-99996999999989-999
Q ss_pred EEECCC
Q ss_conf 997699
Q 000556 1061 IYVGPL 1066 (1426)
Q Consensus 1061 vy~Gp~ 1066 (1426)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=323.05 Aligned_cols=218 Identities=22% Similarity=0.277 Sum_probs=176.4
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
|+++|++.++.... ....+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~~---------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQGT---------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECSS---------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEEC
T ss_pred EEEEEEEEEECCCC---------EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEE
T ss_conf 79982799969998---------14898615057886997999989998988899998758863--66773288676852
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1------1224268996058888999999999999877129999998899999999999929942111223699988889
Q 000556 909 Q------ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 909 ~------~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glS 982 (1426)
. ..+++.+|||+|+..++|.+||+|++.|...++. .+.++.+++++++++.++|.+..|..+ ..||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCC
T ss_conf 08755511554166430225222799649999999999849---998999999999999769903554894-----3499
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 98999899999996299857882999999999999999999998738-98899994488778996306698991693999
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEI 1061 (1426)
Q Consensus 983 gGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~v 1061 (1426)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|+.. ++...+|++++|++ |+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-99986999999979-9999
Q ss_pred EECCCC
Q ss_conf 976998
Q 000556 1062 YVGPLG 1067 (1426)
Q Consensus 1062 y~Gp~g 1067 (1426)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=322.89 Aligned_cols=202 Identities=26% Similarity=0.347 Sum_probs=158.0
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHH
Q ss_conf 574130578948849999859999589999999649899998200999968408998765-1599964788889999999
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 166 ~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~-r~~aYV~Q~D~~~~~lTVr 244 (1426)
.+|+|||+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+..++ +.++||+|+..+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998545117883256769989986430999999968999998622233558999999991994323433347556667
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 EtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1426)
||+.|+.+.++... ...++.+++.+||.+-+|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HC
T ss_conf 88888776405538-------------------------------------9999999998256555758955-----47
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEE
Q ss_conf 86675589999997159847488579989998989999999999776049859999944900487305949996299299
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1426)
Q Consensus 325 SGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~iv 404 (1426)
||||||||+||++|+.+|++++|||||+|||+.+..+|.+.++++.+..+.|+++ ++|...++.+++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~-vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH-ITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEE-EESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 9998401403043443677144347876799899999999999998647968999-749999999969999999799999
Q ss_pred EECCHHHHH
Q ss_conf 953966699
Q 000556 405 YQGPRELVL 413 (1426)
Q Consensus 405 y~Gp~~~~~ 413 (1426)
++|+.+++.
T Consensus 208 ~~g~~~el~ 216 (229)
T d3d31a2 208 QVGKPEEIF 216 (229)
T ss_dssp EEECHHHHH
T ss_pred EECCHHHHH
T ss_conf 986999998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=321.43 Aligned_cols=209 Identities=22% Similarity=0.312 Sum_probs=181.9
Q ss_pred CCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC------CCEEEEECCCC
Q ss_conf 655157413057894884999985999958999999964989999820099996840899876------51599964788
Q 000556 162 KKHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP------ERTAAYISQHD 235 (1426)
Q Consensus 162 ~~~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~------~r~~aYV~Q~D 235 (1426)
+...++|+|||+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++..... ++.++||+|+.
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 81489861505788699799998999898889999875886366---773288676852087555115541664302252
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88999999999998545117883256769989986430999999968999998622233558999999991994323433
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTM 315 (1426)
Q Consensus 236 ~~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~ 315 (1426)
..++.+||+||+.|+.+..+... ++....++.+|+.+||++.+|..
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~ 137 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSY 137 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 22799649999999999849998----------------------------------99999999999976990355489
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEE
Q ss_conf 34755666786675589999997159847488579989998989999999999776049859999944900487305949
Q 000556 316 VGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 316 VG~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~I 395 (1426)
++ .|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+++ ++|...++..++|+|
T Consensus 138 ~~-----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~-vTHdl~~~~~~~dri 211 (240)
T d3dhwc1 138 PS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILL-ITHEMDVVKRICDCV 211 (240)
T ss_dssp BS-----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEE-EBSCHHHHHHHCSEE
T ss_pred HH-----HCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCCHHHHHHHCCEE
T ss_conf 43-----499999989998640105898687446556589888567999999998646978999-838999999869999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 996299299953966699
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~ivy~Gp~~~~~ 413 (1426)
++|++|++++.|+.+++.
T Consensus 212 ~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEEETTEEEEEEETTTTT
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799999987999997
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=322.29 Aligned_cols=208 Identities=21% Similarity=0.276 Sum_probs=180.9
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC-----C-CCEEEEECCCCCC
Q ss_conf 515741305789488499998599995899999996498999982009999684089987-----6-5159996478888
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFV-----P-ERTAAYISQHDNH 237 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~-----~-~r~~aYV~Q~D~~ 237 (1426)
.+.+|+|||+.+++|++++|+||||||||||+++|+|..+|+ +|+|.++|.++.... . +|.++||+|+..+
T Consensus 17 ~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L 93 (242)
T d1oxxk2 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93 (242)
T ss_dssp TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCC
T ss_pred CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCC
T ss_conf 989980407898799899999899980999999997586888---74599999995137311153120451477304334
Q ss_pred CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999854511788325676998998643099999996899999862223355899999999199432343334
Q 000556 238 IGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVG 317 (1426)
Q Consensus 238 ~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG 317 (1426)
+|.+||+||+.|+.+..+... .+....++.+++.+||++.+|..++
T Consensus 94 ~p~ltv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~p~ 139 (242)
T d1oxxk2 94 YPNLTAFENIAFPLTNMKMSK----------------------------------EEIRKRVEEVAKILDIHHVLNHFPR 139 (242)
T ss_dssp CTTSCHHHHHHGGGTTSSCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred CCCCCHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHCCHHHHHHCCHH
T ss_conf 666657777665567613799----------------------------------9999999999866591766648954
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEE
Q ss_conf 75566678667558999999715984748857998999898999999999977604985999994490048730594999
Q 000556 318 DEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIIL 397 (1426)
Q Consensus 318 ~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~Iil 397 (1426)
.|||||||||+||++|+.+|+++++||||+|||+.++.++++.++++.+..+.|+++ ++|...++.+++|+|++
T Consensus 140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~-vTHd~~~~~~~~dri~v 213 (242)
T d1oxxk2 140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLV-VSHDPADIFAIADRVGV 213 (242)
T ss_dssp -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEE-EESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE-EECCHHHHHHHCCEEEE
T ss_conf -----599999858998757760466145447866799899889989999998635987999-97999999996999999
Q ss_pred ECCCEEEEECCHHHHHH
Q ss_conf 62992999539666999
Q 000556 398 LSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 398 L~~G~ivy~Gp~~~~~~ 414 (1426)
|++|+++.+|+.+++.+
T Consensus 214 m~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 214 LVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999869999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=317.72 Aligned_cols=209 Identities=24% Similarity=0.356 Sum_probs=167.7
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5157413057894884999985999958999999964989999820099996840899876---5159996478888999
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~---~r~~aYV~Q~D~~~~~ 240 (1426)
...+|+|+|+.+++|+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++. +..
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~-lf~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNV-LLN 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCC-CTT
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCC-CCC
T ss_conf 960374248998499999999999998999999997357888---8899999999440024655352889824465-578
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999854511788325676998998643099999996899999862223355899999999199432343334755
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1426)
.||+||+.|+..-. +.+...+++...+. .-.+..++...+|.+|..+
T Consensus 91 ~Ti~eNi~~~~~~~-------------------------~~~~~~~~~~~~~~--------~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 91 RSIIDNISLANPGM-------------------------SVEKVIYAAKLAGA--------HDFISELREGYNTIVGEQG 137 (241)
T ss_dssp SBHHHHHCTTSTTC-------------------------CHHHHHHHHHHHTC--------HHHHTTSTTGGGSBCSTTT
T ss_pred CCCCCCCCCCCCCC-------------------------CHHHHHHHHHHHHH--------HHHHHHHHCCHHHHCCCCC
T ss_conf 40003522357554-------------------------38889999999755--------7888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 66678667558999999715984748857998999898999999999977604985999994490048730594999629
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~ 400 (1426)
. .|||||||||+|||+++.+|++++||||||+||+.++.+|++.|+++.+ ++|+|+..|+ .+....+|+|++|++
T Consensus 138 ~-~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~--l~~~~~~D~i~vl~~ 212 (241)
T d2pmka1 138 A-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEK 212 (241)
T ss_dssp T-CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSS--GGGGTTSSEEEEEET
T ss_pred C-CCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECC--HHHHHHCCEEEEEEC
T ss_conf 8-6698898987544344416513556477655598999999999999858--9989999788--999984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 92999539666999
Q 000556 401 GQIVYQGPRELVLE 414 (1426)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1426)
|+++++|++++++.
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999982
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=315.25 Aligned_cols=213 Identities=24% Similarity=0.325 Sum_probs=150.8
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
|..+|++.++ +++.+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 8999589999-------------99999806256884897999999999999999999966988--78887999867244
Q ss_pred C--CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 1--12242689960588889999999999998771299999988999999999999299421112236999888899899
Q 000556 909 Q--ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQR 986 (1426)
Q Consensus 909 ~--~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqr 986 (1426)
. ...++..+||+|+...++.+|+.|++.|.+.++. .+..+..+.++++++.++|.+..+..+ +.+|||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHH-----HHCCHHHH
T ss_conf 6839887218675001546878667788898998617---998999999999998679788885045-----33799898
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 98999999962998578829999999999999999999987389889999448877899630669899169399997699
Q 000556 987 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 987 kRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~ 1066 (1426)
||+.||++|+.+|++|+|||||+|||..+...+++.++++++.|+|||+++|++. ++...+|++++|.+ |++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-99996999999989-999999289
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=318.87 Aligned_cols=212 Identities=21% Similarity=0.364 Sum_probs=166.5
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCC
Q ss_conf 51574130578948849999859999589999999649899998200999968408998765---159996478888999
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGE 240 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~---r~~aYV~Q~D~~~~~ 240 (1426)
+..+|+|+|+.++||+.++|+||||||||||+++|+|.++|. +|+|.+||.++.+...+ +.++||+|++..+ .
T Consensus 26 ~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~ 101 (251)
T d1jj7a_ 26 DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF-G 101 (251)
T ss_dssp TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-S
T ss_pred CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-C
T ss_conf 997674438998499899999999984999999986143787---689988998531101378887765404565002-7
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999854511788325676998998643099999996899999862223355899999999199432343334755
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1426)
.||+||+.|+..... +.+...++... ....-.+.+|++..+|.+|+..
T Consensus 102 ~tv~eni~~g~~~~~------------------------~~~~~~~~~~~--------~~~~~~i~~l~~g~~~~i~~~~ 149 (251)
T d1jj7a_ 102 RSLQENIAYGLTQKP------------------------TMEEITAAAVK--------SGAHSFISGLPQGYDTEVDEAG 149 (251)
T ss_dssp SBHHHHHHCSCSSCC------------------------CHHHHHHHHHH--------HTCHHHHHTSTTGGGCBCCSSC
T ss_pred CCHHHHHHHHHCCCC------------------------HHHHHHHHHHH--------HHHHHHHHHCCCCCHHHHHCCC
T ss_conf 634655454210130------------------------27889999999--------9899999856121113675167
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 66678667558999999715984748857998999898999999999977604985999994490048730594999629
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~ 400 (1426)
. .|||||||||+|||+++.+|++++||||||+||+.+..+|++.|+++.+..++|+++ ++|.. +....+|+|++|++
T Consensus 150 ~-~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l-~~~~~aDrI~vl~~ 226 (251)
T d1jj7a_ 150 S-QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHL-SLVEQADHILFLEG 226 (251)
T ss_dssp S-SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCH-HHHHTCSEEEEEET
T ss_pred C-CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCH-HHHHHCCEEEEEEC
T ss_conf 6-689547048998604456870787167576568536899999999976506989999-95979-99985999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 92999539666999
Q 000556 401 GQIVYQGPRELVLE 414 (1426)
Q Consensus 401 G~ivy~Gp~~~~~~ 414 (1426)
|+++++|+++++++
T Consensus 227 G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 227 GAIREGGTHQQLME 240 (251)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=317.34 Aligned_cols=209 Identities=21% Similarity=0.280 Sum_probs=184.9
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
|+.+|+++++. . .+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~-------------~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKWK-------------N-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEECS-------------S-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECT
T ss_pred EEEEEEEEEEC-------------C-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECC
T ss_conf 89998999949-------------9-78843378987998999998999829999999964768--88788999567346
Q ss_pred CC-CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 11-22426899605888899999999999987712999999889999999999992994211122369998888998999
Q 000556 909 QE-TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 909 ~~-~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrk 987 (1426)
.. ..++.+|||+|+..++|.+||+|++.|...++.-. . .++++++++.++|.+..|..+ ..|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~---~---~~~~~~~l~~~~l~~~~~~~~-----~~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK---D---PKRVLDTARDLKIEHLLDRNP-----LTLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCC---C---HHHHHHHHHHTTCTTTTTSCG-----GGSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCC---H---HHHHHHHHHHHCCHHHHHCCH-----HHCCHHHHC
T ss_conf 52165740561512111174665778888877640553---8---999999999825655575895-----547999840
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89999999629985788299999999999999999999873-89889999448877899630669899169399997699
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 988 RlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~-~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~ 1066 (1426)
|++||++|+.+|++|+|||||+|||+.+...+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-99996999999979-999998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=310.75 Aligned_cols=206 Identities=23% Similarity=0.269 Sum_probs=171.8
Q ss_pred CCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-------CEEEEECCCC
Q ss_conf 551574130578948849999859999589999999649899998200999968408998765-------1599964788
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-------RTAAYISQHD 235 (1426)
Q Consensus 163 ~~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~-------r~~aYV~Q~D 235 (1426)
....+|+|+|+.+++|++++|+|||||||||||++|+|..+|+ +|+|.++|.++.....+ +.++||.|++
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCH
T ss_conf 2089871337788499799998899998216557506887777---6626999998576885551231255577880412
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 889999999999985451178832567699899864309999999689999986222335589999999919943-2343
Q 000556 236 NHIGEMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEV-CADT 314 (1426)
Q Consensus 236 ~~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~-~~dT 314 (1426)
.+++.+||+||+.|+...+..+.. +. .+....+...|+.+||++ .+|.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~--------------------~~-----------~~~~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAM--------------------SG-----------EERRKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCC--------------------CH-----------HHHHHHHHHHHHHTTCCGGGTTC
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCC--------------------CH-----------HHHHHHHHHHHHHHCHHHHHHCC
T ss_conf 417686688877578887224789--------------------99-----------99999999988762423455348
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCE
Q ss_conf 33475566678667558999999715984748857998999898999999999977604985999994490048730594
Q 000556 315 MVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDD 394 (1426)
Q Consensus 315 ~VG~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~ 394 (1426)
.+ ..|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+|+..| ... ....+|+
T Consensus 142 ~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH-d~~-~a~~~dr 214 (230)
T d1l2ta_ 142 KP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH-DIN-VARFGER 214 (230)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS-CHH-HHTTSSE
T ss_pred CH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC-CHH-HHHHCCE
T ss_conf 80-----2389999999998756522788899468765469899999999999999843999999878-889-9986998
Q ss_pred EEEECCCEEEEECCH
Q ss_conf 999629929995396
Q 000556 395 IILLSDGQIVYQGPR 409 (1426)
Q Consensus 395 IilL~~G~ivy~Gp~ 409 (1426)
|++|.+|++++.|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEECCC
T ss_conf 999989999995257
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=314.19 Aligned_cols=208 Identities=23% Similarity=0.380 Sum_probs=123.8
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 157413057894884999985999958999999964989999820099996840899876---51599964788889999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~---~r~~aYV~Q~D~~~~~l 241 (1426)
..+|+|||+.+++|+.++|+||+|||||||+++|+|.++|. +|+|.+||.++.+... ++.++||+|++.+ +..
T Consensus 31 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~ 106 (255)
T d2hyda1 31 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSD 106 (255)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-CSS
T ss_pred CCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCC-CCC
T ss_conf 76064438998399899998899980999999997127863---00015399875307888863414565101568-998
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998545117883256769989986430999999968999998622233558999999991994323433347556
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1426)
||+|||.|+... .+.++..+++...+ ..+. +..|++..||.+|+.+.
T Consensus 107 Ti~eNi~~g~~~-------------------------~~~~~~~~al~~~~-----l~~~---i~~lp~gl~t~i~~~g~ 153 (255)
T d2hyda1 107 TVKENILLGRPT-------------------------ATDEEVVEAAKMAN-----AHDF---IMNLPQGYDTEVGERGV 153 (255)
T ss_dssp BHHHHHGGGCSS-------------------------CCHHHHHHHHHHTT-----CHHH---HHTSTTGGGCBCCGGGT
T ss_pred CHHHHHHCCCCC-------------------------CCHHHHHHHHHHHC-----CHHH---HHHCCCCCCCHHCCCCC
T ss_conf 799998515867-------------------------99999999999969-----7999---97362420103338889
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 66786675589999997159847488579989998989999999999776049859999944900487305949996299
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G 401 (1426)
.||||||||++|||+++.+|++++||||||+||..++..|++.|+++.+ ++|+|+..| ..+....+|+|++|++|
T Consensus 154 -~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH--~~~~~~~~D~ii~l~~G 228 (255)
T d2hyda1 154 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAH--RLSTITHADKIVVIENG 228 (255)
T ss_dssp -TSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECS--SGGGTTTCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEEC--CHHHHHHCCEEEEEECC
T ss_conf -8499999999999998559989998376544797799999999998753--888999968--99999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999539666999
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1426)
+++.+|+++++++
T Consensus 229 ~iv~~G~~~eLl~ 241 (255)
T d2hyda1 229 HIVETGTHRELIA 241 (255)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=307.80 Aligned_cols=214 Identities=21% Similarity=0.258 Sum_probs=149.0
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
|+.+|++.++. ...+|+|||+.+++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 3 Lev~nl~k~yg-------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECC
T ss_pred EEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEEC
T ss_conf 99997899989-------------9998815066886997999998999829999999974766--78997799999933
Q ss_pred CC----------------CCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 11----------------2242689960588889999999999998771299999988999999999999299421-112
Q 000556 909 QE----------------TFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-IQS 971 (1426)
Q Consensus 909 ~~----------------~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~ 971 (1426)
.. ..++.+|||.|+..++|.+||.|++.+...... ..+.++.++.+.++++.++|.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 677520000235176799974544899833231411010213656578762--999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 23699988889989998999999962998578829999999999999999999987389889999448877899630669
Q 000556 972 LVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 972 ~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l 1051 (1426)
.+ ..||||||||++||++|+.+|++|++||||+|||+.+...|++.+++++++|.|||+++|++. ++...+|++
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred CC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 82-----205677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 899169399997699
Q 000556 1052 FLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1052 ~ll~~gG~~vy~Gp~ 1066 (1426)
++|.+ |+++..|++
T Consensus 220 ~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLHQ-GKIEEEGDP 233 (258)
T ss_dssp EEEET-TEEEEEECH
T ss_pred EEEEC-CEEEEECCH
T ss_conf 99979-999998499
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=311.46 Aligned_cols=218 Identities=26% Similarity=0.349 Sum_probs=120.6
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 1574130578948849999859999589999999649899998200999968408998765----159996478888999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIGE 240 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~----r~~aYV~Q~D~~~~~ 240 (1426)
+++|+|||+.+++||+++|+||+|||||||+++|+|.++|+ +|+|.++|.++....++ +.++|++|+...++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999854511788325676998998643099999996899999862223355899999999199432343334755
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1426)
+||+||+.+++...+..... ....+ ...++. .+....++.+++.+++++.+|..++
T Consensus 94 ltv~enl~~~~~~~~~~~~~----~~~~~----~~~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 149 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN----SLFYK----KWIPKE-------------EEMVEKAFKILEFLKLSHLYDRKAG--- 149 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH----HHHHC----SSCCCC-------------HHHHHHHHHHHHHTTCGGGTTSBGG---
T ss_pred CEEEEEEEEHHHHCCCCCHH----HHHHH----CCCCCH-------------HHHHHHHHHHHHHCCCCHHCCCCHH---
T ss_conf 74232143013330345045----66542----135328-------------9999999999876196302059535---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 66678667558999999715984748857998999898999999999977604985999994490048730594999629
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~ 400 (1426)
.|||||||||.||++++.+|++++|||||+|||..++.+|++.++++.. .+.| |+.+.|...++.+++|+|++|++
T Consensus 150 --~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~t-il~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 150 --ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGIT-FLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp --GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE-EEEECSCCSTTGGGCSEEEEEET
T ss_pred --HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHHHHHCCEEEEEEC
T ss_conf --6991888899999999759272324397656999999999999999997-8998-99994769999986999999969
Q ss_pred CEEEEECCHHHHH
Q ss_conf 9299953966699
Q 000556 401 GQIVYQGPRELVL 413 (1426)
Q Consensus 401 G~ivy~Gp~~~~~ 413 (1426)
|+++..|+.+++.
T Consensus 226 G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 226 GQIIAEGRGEEEI 238 (254)
T ss_dssp TEEEEEEESHHHH
T ss_pred CEEEEEECHHHHH
T ss_conf 9899996689986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=309.91 Aligned_cols=213 Identities=23% Similarity=0.327 Sum_probs=144.2
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
-++.+|+++++. ...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~yg-------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 799961899989-------------9888830257888997999999999859999999967888--8803898424434
Q ss_pred CCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 811---22-426899605888899999999999987712999999889999999999992-9942111223699988889
Q 000556 908 KQE---TF-ARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELV-ELKPLIQSLVGLPGVSGLS 982 (1426)
Q Consensus 908 ~~~---~~-~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vG~~~~~glS 982 (1426)
... .. +.-++|++|+..++|.+||+|++.+.+..+.+ .+..++.++++++.+ +|.+..+..+ ..||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHCHHHHHHCCH-----HHCC
T ss_conf 46608888874235567655457763699999988873278----88999999999987417688875854-----3389
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEE
Q ss_conf 98999899999996299857882999999999999999999998738988999944887789963066989916939999
Q 000556 983 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIY 1062 (1426)
Q Consensus 983 gGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy 1062 (1426)
||||||+.||++|+.+|++|+|||||+|||+.+...+++.+++++++|.|||+++|+.. ++.+.+|++++|.+ |++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEE
T ss_conf 99999999999998299874003988679999999999999999968998999958899-99996999999989-99999
Q ss_pred ECCC
Q ss_conf 7699
Q 000556 1063 VGPL 1066 (1426)
Q Consensus 1063 ~Gp~ 1066 (1426)
.|++
T Consensus 220 ~g~~ 223 (240)
T d1ji0a_ 220 EGKA 223 (240)
T ss_dssp EEEH
T ss_pred ECCH
T ss_conf 8489
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=308.28 Aligned_cols=209 Identities=23% Similarity=0.383 Sum_probs=149.4
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCC
Q ss_conf 1574130578948849999859999589999999649899998200999968408998765---1599964788889999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~---r~~aYV~Q~D~~~~~l 241 (1426)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++.+.... +.++||+|++. +...
T Consensus 28 ~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ 103 (253)
T d3b60a1 28 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH-LFND 103 (253)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCC-CCSS
T ss_pred CCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCC-CCCC
T ss_conf 76353328998599999999999985999999986216888---4689878801211106654206879950254-4786
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998545117883256769989986430999999968999998622233558999999991994323433347556
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1426)
|+++|+.|+..... +.+...+++...+ ..+. +-.|++..||.+|+.+.
T Consensus 104 ti~~n~~~~~~~~~------------------------~~~~i~~a~~~~~-----l~~~---i~~l~~gl~t~~~~~~~ 151 (253)
T d3b60a1 104 TVANNIAYARTEEY------------------------SREQIEEAARMAY-----AMDF---INKMDNGLDTIIGENGV 151 (253)
T ss_dssp BHHHHHHTTTTSCC------------------------CHHHHHHHHHTTT-----CHHH---HHHSTTGGGSBCCTTSC
T ss_pred CHHHHHHHCCCCCC------------------------CHHHHHHHHHHHH-----HHHH---HHHCCCCCHHHHCCCCC
T ss_conf 20243320572208------------------------9999999999981-----7999---97355441014348889
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 66786675589999997159847488579989998989999999999776049859999944900487305949996299
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G 401 (1426)
.|||||||||+|||+++.+|++++||||||+||..+...|++.|+++.+ ++|+|+. .|. .++...+|+|++|++|
T Consensus 152 -~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~i-tH~-l~~~~~~D~v~vl~~G 226 (253)
T d3b60a1 152 -LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVI-AHR-LSTIEQADEIVVVEDG 226 (253)
T ss_dssp -SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEE-CSC-GGGTTTCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEE-ECC-HHHHHHCCEEEEEECC
T ss_conf -8499999999999999549988995164445898899999999987522--7889999-887-9999859999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999539666999
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1426)
+|+++|+++++++
T Consensus 227 ~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 227 IIVERGTHSELLA 239 (253)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999889999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=307.12 Aligned_cols=210 Identities=25% Similarity=0.347 Sum_probs=168.7
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC-CEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 30578948849999859999589999999649899998200999968408998765-15999647888899999999999
Q 000556 170 DVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE-RTAAYISQHDNHIGEMTVRETLA 248 (1426)
Q Consensus 170 ~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~-r~~aYV~Q~D~~~~~lTVrEtL~ 248 (1426)
|+|+.+. ++.++|+||||||||||+++|+|.++|+ +|+|.+||.++....+. |.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 85451178832567699899864309999999689999986222335589999999919943234333475566678667
Q 000556 249 FSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGISGGE 328 (1426)
Q Consensus 249 Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgLSGGQ 328 (1426)
|+.+.. . +.+ ...+++.+++.+||++.+|..+. .|||||
T Consensus 93 ~~l~~~--~----------~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RVE------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HHH------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCC--C----------HHH------------------------HHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 532336--7----------788------------------------99999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 55899999971598474885799899989899999999997760498599999449004873059499962992999539
Q 000556 329 RKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGP 408 (1426)
Q Consensus 329 KkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~ivy~Gp 408 (1426)
||||+||++++.+|++++|||||+|||+.++..+.+.++++.+..+.|+|+ ++|...++..++|+|++|++|+++.+|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~-vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH-VTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEE-EESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976999-8189999999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 66699999845998999999467997
Q 000556 409 RELVLEFFESMGFKCPKRKGVADFLQ 434 (1426)
Q Consensus 409 ~~~~~~~F~~~Gf~cp~~~~~adfl~ 434 (1426)
.+++.+ ++...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=303.40 Aligned_cols=206 Identities=23% Similarity=0.343 Sum_probs=173.3
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC----CEEEEECCCCCCCC
Q ss_conf 51574130578948849999859999589999999649899998200999968408998765----15999647888899
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE----RTAAYISQHDNHIG 239 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~----r~~aYV~Q~D~~~~ 239 (1426)
.+++|+|||+.+++||+++|+||+|||||||+++|+|.++|+ +|+|.++|.++....++ ..++|++|+...++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 988883025788899799999999985999999996788888---03898424434466088888742355676554577
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 9999999998545117883256769989986430999999968999998622233558999999991-994323433347
Q 000556 240 EMTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL-GLEVCADTMVGD 318 (1426)
Q Consensus 240 ~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~L-GL~~~~dT~VG~ 318 (1426)
.+||+||+.+++........ .....+.++..+ +|.+.+|..++
T Consensus 95 ~ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~- 138 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLGG- 138 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBSS-
T ss_pred CCCHHHHHHHHHHHCCCHHH-----------------------------------HHHHHHHHHHHHHCHHHHHHCCHH-
T ss_conf 63699999988873278889-----------------------------------999999999874176888758543-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE
Q ss_conf 55666786675589999997159847488579989998989999999999776049859999944900487305949996
Q 000556 319 EMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILL 398 (1426)
Q Consensus 319 ~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL 398 (1426)
.|||||||||+||++++.+|++++|||||+|||+.+..+|++.++++.. .+.|+++ ++|...++.+++|+|++|
T Consensus 139 ----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~-~tH~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 139 ----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILL-VEQNALGALKVAHYGYVL 212 (240)
T ss_dssp ----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEE-EESCHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEE
T ss_conf ----3899999999999999829987400398867999999999999999996-8998999-958899999969999999
Q ss_pred CCCEEEEECCHHHHHH
Q ss_conf 2992999539666999
Q 000556 399 SDGQIVYQGPRELVLE 414 (1426)
Q Consensus 399 ~~G~ivy~Gp~~~~~~ 414 (1426)
.+|++++.|+.+++.+
T Consensus 213 ~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 213 ETGQIVLEGKASELLD 228 (240)
T ss_dssp ETTEEEEEEEHHHHHT
T ss_pred ECCEEEEECCHHHHHC
T ss_conf 8999999848999842
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=317.69 Aligned_cols=209 Identities=23% Similarity=0.320 Sum_probs=162.6
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 157413057894884999985999958999999964989999820099996840899876---51599964788889999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP---ERTAAYISQHDNHIGEM 241 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~---~r~~aYV~Q~D~~~~~l 241 (1426)
..+|+|||+.++||+.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|++..++ .
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-C
T ss_conf 84142258998599999999999997999999999960989---8779889988442467888743679756654578-5
Q ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999998545117883256769989986430999999968999998622233558999999991994323433347556
Q 000556 242 TVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMI 321 (1426)
Q Consensus 242 TVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~ 321 (1426)
||+||+.++..... .. +...+..+. .+. .-....+++..+|.+|+.+.
T Consensus 91 ti~eNi~~~~~~~~--~~-~~~~~~~~~---~~~--------------------------~~~~~~~~~~~~~~i~~~g~ 138 (242)
T d1mv5a_ 91 TIRENLTYGLEGDY--TD-EDLWQVLDL---AFA--------------------------RSFVENMPDQLNTEVGERGV 138 (242)
T ss_dssp EHHHHTTSCTTSCS--CH-HHHHHHHHH---HTC--------------------------TTTTTSSTTGGGCEESTTSB
T ss_pred CHHHHEECCCCCCC--CH-HHHHHHHHH---HHH--------------------------HHHHCCCCCCCCCCCCCCCC
T ss_conf 34543012445554--23-567789999---975--------------------------55420374210152368789
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCC
Q ss_conf 66786675589999997159847488579989998989999999999776049859999944900487305949996299
Q 000556 322 RGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDG 401 (1426)
Q Consensus 322 rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G 401 (1426)
.|||||||||+|||+++.+|++++|||||++||+.++..|++.|+++.+ ++|+|+..| . .+....+|+|++|++|
T Consensus 139 -~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH-~-l~~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 139 -KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAH-R-LSTIVDADKIYFIEKG 213 (242)
T ss_dssp -CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECC-S-HHHHHHCSEEEEEETT
T ss_pred -CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEEC-C-HHHHHHCCEEEEEECC
T ss_conf -8799999999999998529989996588655698899999887888717--998999978-7-9999849999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 2999539666999
Q 000556 402 QIVYQGPRELVLE 414 (1426)
Q Consensus 402 ~ivy~Gp~~~~~~ 414 (1426)
+++++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999999999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=310.20 Aligned_cols=211 Identities=26% Similarity=0.434 Sum_probs=174.2
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.|+|+||+|+|+. +.+.+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 1 eI~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred CEEEEEEEEEECC-----------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEE
T ss_conf 9299999999089-----------99603742489984999999999999989999999973578--8888999999994
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 81---12242689960588889999999999998771299999988999999999999299-------421112236999
Q 000556 908 KQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVEL-------KPLIQSLVGLPG 977 (1426)
Q Consensus 908 ~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vG~~~ 977 (1426)
.. ..+++.++||+|+..++ ..||+|++.+.. ...+.++ ++++++..++ ..-.++.+|..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88889989998999999962998578829999999999999999999987389889999448877899630669899169
Q 000556 978 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 978 ~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~g 1057 (1426)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. +++|+|+++|+++ ....+|++++|++
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~- 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEK- 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEET-
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf -8669889898754434441651355647765559899999999999985-8998999978899--9984999999989-
Q ss_pred CEEEEECCC
Q ss_conf 399997699
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 G~~vy~Gp~ 1066 (1426)
|+++..|+.
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=305.77 Aligned_cols=218 Identities=24% Similarity=0.268 Sum_probs=188.0
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
-+..+|++.++. ..++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 4 iL~v~nlsk~yg-------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 699977899979-------------9688712179988997999999999849999999977976--8873799999966
Q ss_pred CCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8112----24268996058888999999999999877129----------999998899999999999929942111223
Q 000556 908 KQET----FARISGYCEQNDIHSPFVTVYESLLYSAWLRL----------PPEVDSETRKMFIEEVMELVELKPLIQSLV 973 (1426)
Q Consensus 908 ~~~~----~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~L~~~~~~~v 973 (1426)
.... .++.++|++|+...++.+||+|++.+++..+. ......++..+.++++++.+++.+..|..+
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCH
T ss_conf 40569999983387257764247887423214301333034504566542135328999999999987619630205953
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 69998888998999899999996299857882999999999999999999998738988999944887789963066989
Q 000556 974 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1426)
Q Consensus 974 G~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~l 1053 (1426)
+ .||||||||+.||++|+.+|++|+|||||+|||+.++..+++.+++++++|.|||+++|+.. ++.+.+|++++
T Consensus 149 ~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~v 222 (254)
T d1g6ha_ 149 G-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYV 222 (254)
T ss_dssp G-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEE
T ss_pred H-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEE
T ss_conf 5-----69918888999999997592723243976569999999999999999978998999947699-99986999999
Q ss_pred EECCCEEEEECCCC
Q ss_conf 91693999976998
Q 000556 1054 MKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1054 l~~gG~~vy~Gp~g 1067 (1426)
|.+ |+++..|+..
T Consensus 223 m~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 223 MFN-GQIIAEGRGE 235 (254)
T ss_dssp EET-TEEEEEEESH
T ss_pred EEC-CEEEEEECHH
T ss_conf 969-9899996689
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=301.65 Aligned_cols=209 Identities=26% Similarity=0.277 Sum_probs=181.1
Q ss_pred CCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC--CCEEEEECCCCCCCCC
Q ss_conf 55157413057894884999985999958999999964989999820099996840899876--5159996478888999
Q 000556 163 KHLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP--ERTAAYISQHDNHIGE 240 (1426)
Q Consensus 163 ~~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~--~r~~aYV~Q~D~~~~~ 240 (1426)
.++++|+|+|+.+++|++++|+||+|||||||+++|+|.++|+ +|+|.++|.++.+... ++.++||+|++..+++
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCC
T ss_conf 9999980625688489799999999999999999996698878---8879998672446839887218675001546878
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999854511788325676998998643099999996899999862223355899999999199432343334755
Q 000556 241 MTVRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEM 320 (1426)
Q Consensus 241 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~ 320 (1426)
+||+|++.|.+.+.+... .+....++..++.++|.+-.+..++
T Consensus 90 ltv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 132 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS--- 132 (238)
T ss_dssp SBHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred CCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH---
T ss_conf 667788898998617998----------------------------------9999999999986797888850453---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 66678667558999999715984748857998999898999999999977604985999994490048730594999629
Q 000556 321 IRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~ 400 (1426)
.+|||||||+.+|++++++|++++|||||+|||..++.+|.+.++++.. .+.|+++ ..|...++..++|+|++|.+
T Consensus 133 --~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~-~tH~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 133 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILV-SSHNMLEVEFLCDRIALIHN 208 (238)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEE-EECCHHHHTTTCSEEEEEET
T ss_pred --HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEEEEEEC
T ss_conf --3799898999999998659998873379889798999999999999996-5998999-95989999996999999989
Q ss_pred CEEEEECCHHHHHHH
Q ss_conf 929995396669999
Q 000556 401 GQIVYQGPRELVLEF 415 (1426)
Q Consensus 401 G~ivy~Gp~~~~~~~ 415 (1426)
|++++.|+.+++.+.
T Consensus 209 G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 209 GTIVETGTVEELKER 223 (238)
T ss_dssp TEEEEEEEHHHHHHH
T ss_pred CEEEEECCHHHHHHC
T ss_conf 999999289999865
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=305.00 Aligned_cols=213 Identities=25% Similarity=0.401 Sum_probs=177.3
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 82258932065773341343104456862784401999947908999646899646799535189778637999999590
Q 000556 826 PHSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGY 905 (1426)
Q Consensus 826 ~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~ 905 (1426)
...|+|+||+|+|+. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.
T Consensus 14 ~g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCE
T ss_conf 887999988999599-----------99760644389983998999988999809999999971278--63000153998
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
Q ss_conf 2781---12242689960588889999999999998771299999988999999999999299421-------1122369
Q 000556 906 PKKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGL 975 (1426)
Q Consensus 906 ~~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vG~ 975 (1426)
+... ..+++.++||+|++.+++ .||+||+.|.. + +...+ .++++++..++.+. .|+.+|.
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred ECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCC
T ss_conf 7530788886341456510156899-87999985158----6-79999----9999999969799997362420103338
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 99888899899989999999629985788299999999999999999999873898899994488778996306698991
Q 000556 976 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMK 1055 (1426)
Q Consensus 976 ~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~ 1055 (1426)
.+ ..||||||||++|||+|+.+|+||+||||||+||..++..|++.++++. .++|+|+++|+++ ....+|++++|+
T Consensus 151 ~g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~ 226 (255)
T d2hyda1 151 RG-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE 226 (255)
T ss_dssp GG-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE
T ss_conf 88-9849999999999999855998999837654479779999999999875-3888999968999--998599999998
Q ss_pred CCCEEEEECCC
Q ss_conf 69399997699
Q 000556 1056 RGGQEIYVGPL 1066 (1426)
Q Consensus 1056 ~gG~~vy~Gp~ 1066 (1426)
+|+++..|+.
T Consensus 227 -~G~iv~~G~~ 236 (255)
T d2hyda1 227 -NGHIVETGTH 236 (255)
T ss_dssp -TTEEEEEECH
T ss_pred -CCEEEEECCH
T ss_conf -9999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=303.33 Aligned_cols=217 Identities=23% Similarity=0.336 Sum_probs=175.3
Q ss_pred CEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 22589320657733413431044568627844019999479089996468996467995351897786379999995902
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 906 (1426)
..|+|+||+|+|+.. ....+|+|||+.+++|+++||+||||||||||+++|.|... +.+|+|.+||.+
T Consensus 10 g~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~ 77 (251)
T d1jj7a_ 10 GLVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKP 77 (251)
T ss_dssp CCEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEE
T ss_conf 369999989988999----------99976744389984998999999999849999999861437--876899889985
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 781---1224268996058888999999999999877129999998899999-----99999992994211122369998
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMF-----IEEVMELVELKPLIQSLVGLPGV 978 (1426)
Q Consensus 907 ~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~-----v~~vl~~l~L~~~~~~~vG~~~~ 978 (1426)
... ..+++.++||+|+..+++ .||+|++.|.. ......+..... ..+.+ ..|.+-.++.++..+
T Consensus 78 i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~----~~~~~~~~~~~~~~~~~~~~~i--~~l~~g~~~~i~~~~- 149 (251)
T d1jj7a_ 78 LPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGL----TQKPTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAG- 149 (251)
T ss_dssp GGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSC----SSCCCHHHHHHHHHHHTCHHHH--HTSTTGGGCBCCSSC-
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHH--HHCCCCCHHHHHCCC-
T ss_conf 311013788877654045650027-63465545421----0130278899999999899999--856121113675167-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 888998999899999996299857882999999999999999999998738-9889999448877899630669899169
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRG 1057 (1426)
Q Consensus 979 ~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~g 1057 (1426)
..||||||||++|||+|+.+|+||+||||||+||+.+...|++.|+++.+. ++|+|+++|+++ ..+.+|++++|++
T Consensus 150 ~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~~- 226 (251)
T d1jj7a_ 150 SQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLEG- 226 (251)
T ss_dssp SSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEET-
T ss_pred CCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 6689547048998604456870787167576568536899999999976506989999959799--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 399997699
Q 000556 1058 GQEIYVGPL 1066 (1426)
Q Consensus 1058 G~~vy~Gp~ 1066 (1426)
|+++..|+.
T Consensus 227 G~iv~~Gt~ 235 (251)
T d1jj7a_ 227 GAIREGGTH 235 (251)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=302.88 Aligned_cols=213 Identities=23% Similarity=0.326 Sum_probs=175.9
Q ss_pred CEEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 22589320657733413431044568627844019999479089996468996467995351897786379999995902
Q 000556 827 HSLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYP 906 (1426)
Q Consensus 827 ~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~ 906 (1426)
..|+|+||+|.|+. ....+|+|||+.+++|+.+||+||||||||||+++|+|... +.+|+|.+||.+
T Consensus 12 g~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 78 (253)
T d3b60a1 12 GDLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHD 78 (253)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 07999988999299-----------99763533289985999999999999859999999862168--884689878801
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 781---12242689960588889999999999998771299999988999999999999299421-------11223699
Q 000556 907 KKQ---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPL-------IQSLVGLP 976 (1426)
Q Consensus 907 ~~~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vG~~ 976 (1426)
... ..+++.++||+|+..++. .|+++++.+.. +...+.+ .++++++..++.+. .++.+|..
T Consensus 79 i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~ 149 (253)
T d3b60a1 79 LREYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN 149 (253)
T ss_dssp TTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT
T ss_pred CCHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC
T ss_conf 211106654206879950254478-62024332057----2208999----99999999817999973554410143488
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 98888998999899999996299857882999999999999999999998738988999944887789963066989916
Q 000556 977 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 977 ~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~ 1056 (1426)
...||||||||++|||+|+.+|+||+||||||+||..++..|++.|+++. .++|+|+++|+++ ....+|++++|++
T Consensus 150 -~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~ 225 (253)
T d3b60a1 150 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED 225 (253)
T ss_dssp -SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET
T ss_pred -CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC
T ss_conf -89849999999999999954998899516444589889999999998752-2788999988799--9985999999989
Q ss_pred CCEEEEECCC
Q ss_conf 9399997699
Q 000556 1057 GGQEIYVGPL 1066 (1426)
Q Consensus 1057 gG~~vy~Gp~ 1066 (1426)
|+++..|+.
T Consensus 226 -G~Iv~~G~~ 234 (253)
T d3b60a1 226 -GIIVERGTH 234 (253)
T ss_dssp -TEEEEEECH
T ss_pred -CEEEEECCH
T ss_conf -999998899
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=297.18 Aligned_cols=207 Identities=23% Similarity=0.308 Sum_probs=173.4
Q ss_pred CCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC----------------CCE
Q ss_conf 5157413057894884999985999958999999964989999820099996840899876----------------515
Q 000556 164 HLTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVP----------------ERT 227 (1426)
Q Consensus 164 ~~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~----------------~r~ 227 (1426)
..++|+|||+.+++||+++|+||||||||||+++|+|..+|+ +|+|.+||.++....+ ++.
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ 90 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHH
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCC
T ss_conf 999881506688699799999899982999999997476678---99779999993367752000023517679997454
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9996478888999999999998545-117883256769989986430999999968999998622233558999999991
Q 000556 228 AAYISQHDNHIGEMTVRETLAFSAR-CQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVL 306 (1426)
Q Consensus 228 ~aYV~Q~D~~~~~lTVrEtL~Faa~-~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~L 306 (1426)
++||.|+...++.+||.||+.|+.. ..+. .+ . +....+..+++.+
T Consensus 91 ig~vfQ~~~l~~~~tv~env~~~~~~~~~~-~~---------~------------------------~~~~~~~~~l~~~ 136 (258)
T d1b0ua_ 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGL-SK---------H------------------------DARERALKYLAKV 136 (258)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCC-CH---------H------------------------HHHHHHHHHHHHT
T ss_pred EEEEEECHHHCCCHHCCHHHHHHHHHHCCC-CH---------H------------------------HHHHHHHHHHHHC
T ss_conf 489983323141101021365657876299-98---------9------------------------9999999999982
Q ss_pred CCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 99432-34333475566678667558999999715984748857998999898999999999977604985999994490
Q 000556 307 GLEVC-ADTMVGDEMIRGISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385 (1426)
Q Consensus 307 GL~~~-~dT~VG~~~~rgLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~ 385 (1426)
||.+- .|... ..|||||||||+||++++.+|+++++||||+|||..++.+|.+.|+++.+ .+.| ++.++|..
T Consensus 137 ~l~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~t-il~vtHdl 209 (258)
T d1b0ua_ 137 GIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKT-MVVVTHEM 209 (258)
T ss_dssp TCCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCC-EEEECSCH
T ss_pred CCCHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCCC-EEEEECCH
T ss_conf 99524430682-----20567788898999998439987885245556887888899876554103-6883-38994899
Q ss_pred HHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 04873059499962992999539666999
Q 000556 386 PETYDLFDDIILLSDGQIVYQGPRELVLE 414 (1426)
Q Consensus 386 ~ei~~lFD~IilL~~G~ivy~Gp~~~~~~ 414 (1426)
.++..++|+|++|.+|+++++|+.+++..
T Consensus 210 ~~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 210 GFARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 99998699999997999999849999983
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=309.99 Aligned_cols=210 Identities=27% Similarity=0.428 Sum_probs=172.7
Q ss_pred EEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 58932065773341343104456862784401999947908999646899646799535189778637999999590278
Q 000556 829 LTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKK 908 (1426)
Q Consensus 829 i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~ 908 (1426)
++++||+|+|+. .+.+|+|||+.++||+++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYDD------------SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSSS------------SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECCC------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 799988998799------------9841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCC
Q ss_conf 1---122426899605888899999999999987712999999889999999999992994-------211122369998
Q 000556 909 Q---ETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELK-------PLIQSLVGLPGV 978 (1426)
Q Consensus 909 ~---~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vG~~~~ 978 (1426)
. ..+++.++||+|++.+++. |++|++.+.. ....+.+. +++.++..++. ...++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGL----EGDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCT----TSCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCC----CCCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-3454301244----55542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 88899899989999999629985788299999999999999999999873898899994488778996306698991693
Q 000556 979 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGG 1058 (1426)
Q Consensus 979 ~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG 1058 (1426)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.+++++ +|+|||+++|+++ ....+|++++|++ |
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~~-G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-G 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-T
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-C
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--9984999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99997699
Q 000556 1059 QEIYVGPL 1066 (1426)
Q Consensus 1059 ~~vy~Gp~ 1066 (1426)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
T ss_conf 99999999
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=0 Score=302.15 Aligned_cols=193 Identities=23% Similarity=0.369 Sum_probs=173.4
Q ss_pred EEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 0199994790899964689964679953518977863799999959027811-224268996058888999999999999
Q 000556 859 GLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE-TFARISGYCEQNDIHSPFVTVYESLLY 937 (1426)
Q Consensus 859 ~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~-~~~~~~~yv~Q~d~~~~~lTv~E~l~f 937 (1426)
|||+.+. ++.++|+||||||||||+++|+|... +.+|+|.++|.+.... ..++.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHH
Q ss_conf 87712999999889999999999992994211122369998888998999899999996299857882999999999999
Q 000556 938 SAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1017 (1426)
Q Consensus 938 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~ 1017 (1426)
+. + ..+.++++++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999998738-9889999448877899630669899169399997699
Q 000556 1018 IVMRTVRNTVDT-GRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1018 ~i~~~l~~~~~~-g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~ 1066 (1426)
.+++.++++.+. |.|||+++|++. ++...+|++++|.+ |+++..|.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=0 Score=296.26 Aligned_cols=198 Identities=22% Similarity=0.334 Sum_probs=157.6
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 15741305789488499998599995899999996498999982009999684089987651599964788889999999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D~~~~~lTVr 244 (1426)
.+||+|+|+.+++|++++|+||+|||||||+++|+|.++|+ +|+|.++| .++||+|++..++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430267-6032
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998545117883256769989986430999999968999998622233558999999991994323433347556667
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 EtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1426)
||+.|+..... .+++...+. .+....+..+....+|.+|+.+. .|
T Consensus 115 eni~~~~~~~~--~~~~~~~~~--------------------------------~~~~~~i~~l~~~~~~~~~~~~~-~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYDE--YRYKSVVKA--------------------------------CQLQQDITKFAEQDNTVLGEGGV-TL 159 (281)
T ss_dssp HHHTTTSCCCH--HHHHHHHHH--------------------------------TTCHHHHTTSTTGGGCEECTTCT-TS
T ss_pred CCCCCCCCCCC--HHHHHHHHH--------------------------------HHHHHHHHHCHHHHHHHHHHHCC-CC
T ss_conf 14203334560--579999999--------------------------------77699998461233235555423-77
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEEE
Q ss_conf 86675589999997159847488579989998989999999999776049859999944900487305949996299299
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQIV 404 (1426)
Q Consensus 325 SGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~iv 404 (1426)
||||||||++||+++.+|++++|||||++||+.+..+|++.+..... .++|+|+ +.|. .+....+|+|++|++|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~-itH~-~~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRIL-VTSK-MEHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEE-ECSC-HHHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECH-HHHHHHCCEEEEEECCEEE
T ss_conf 99999999999999869635133385544898999999999998862-8999999-9252-8999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9539666999
Q 000556 405 YQGPRELVLE 414 (1426)
Q Consensus 405 y~Gp~~~~~~ 414 (1426)
++|++++++.
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.6e-43 Score=277.25 Aligned_cols=187 Identities=20% Similarity=0.357 Sum_probs=152.0
Q ss_pred EEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 27844019999479089996468996467995351897786379999995902781122426899605888899999999
Q 000556 854 LVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1426)
Q Consensus 854 ~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 933 (1426)
+++|+|||+.+++|+++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------999816430267-60321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 999987712999999889999999999992-------9942111223699988889989998999999962998578829
Q 000556 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELV-------ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1426)
Q Consensus 934 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-------~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDE 1006 (1426)
++.|.. ...... .+++++.. .+....++.+|..+ ..||||||||++|||+|+.+|+||+|||
T Consensus 116 ni~~~~------~~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGV------SYDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTS------CCCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCC------CCCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 420333------456057----99999997769999846123323555542-3779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 9999999999999999999873898899994488778996306698991693999976998
Q 000556 1007 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLG 1067 (1426)
Q Consensus 1007 PTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g 1067 (1426)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|++ |++++.|+..
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 5544898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.1e-43 Score=275.97 Aligned_cols=193 Identities=23% Similarity=0.373 Sum_probs=131.6
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCC---CCCCEEEEECCCCCCCCCCCHH
Q ss_conf 8440199994790899964689964679953518977863799999959027811---2242689960588889999999
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQE---TFARISGYCEQNDIHSPFVTVY 932 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~---~~~~~~~yv~Q~d~~~~~lTv~ 932 (1426)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+.... ..+...+|+.|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCEEEEE
Q ss_conf 99999877129999998899999999999929942111223699988889989998999999962-------99857882
Q 000556 933 ESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1005 (1426)
Q Consensus 933 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~-------~p~il~lD 1005 (1426)
+.+.+... . ..+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|+||+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999987389889999448877899630669899169399997699
Q 000556 1006 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1006 EPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~ 1066 (1426)
|||+|||..+...+++.++++++.|.|||+++|++. ++.+.+|++++|+ +|++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 877778989999999999999867999999967799-9999799999997-9989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-41 Score=266.02 Aligned_cols=198 Identities=24% Similarity=0.326 Sum_probs=165.2
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 574130578948849999859999589999999649899998200999968408998765---15999647888899999
Q 000556 166 TILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPE---RTAAYISQHDNHIGEMT 242 (1426)
Q Consensus 166 ~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~---r~~aYV~Q~D~~~~~lT 242 (1426)
+.|++||+.+++|++++|+||+|||||||+++|+|..+ . +|+|.++|.++.....+ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-G---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC-C---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-C---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 15558888994898999998999809999999948879-9---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999985451178832567699899864309999999689999986222335589999999919943234333475566
Q 000556 243 VRETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIR 322 (1426)
Q Consensus 243 VrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~r 322 (1426)
+.+++.+...-+. ....++.+++.++|++..+..+.
T Consensus 89 v~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDKT---------------------------------------RTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCTT---------------------------------------CHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHHHHCCCHHH---------------------------------------HHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 9887641001466---------------------------------------89999999986598767676844-----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEE
Q ss_conf 678667558999999715-------9847488579989998989999999999776049859999944900487305949
Q 000556 323 GISGGERKRVTTGEMMVG-------PALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDI 395 (1426)
Q Consensus 323 gLSGGQKkRvsiaeaLv~-------~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~I 395 (1426)
.|||||||||++|++++. +|++++|||||+|||..+...+.+.++++.. .+.|+++ ..|...++.+.+|+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~-vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVM-SSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEE-CCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986-7999999-967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 996299299953966699
Q 000556 396 ILLSDGQIVYQGPRELVL 413 (1426)
Q Consensus 396 ilL~~G~ivy~Gp~~~~~ 413 (1426)
++|++|+++++|+.+++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.9e-40 Score=260.60 Aligned_cols=196 Identities=20% Similarity=0.269 Sum_probs=147.1
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 25893206577334134310445686278440199994790899964689964679953518977863799999959027
Q 000556 828 SLTFDEVVYSVDMPQEMKLQGVLEDKLVLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPK 907 (1426)
Q Consensus 828 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~ 907 (1426)
.++.+|+++.++ +.+|++||+.+++|++++|+||||||||||+++|+|... +.+|+|.+||.+.
T Consensus 2 ~lev~~ls~~y~--------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGYD--------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEESS--------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEEEC--------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEH
T ss_conf 599998999939--------------928842088985998999999999719999999966205--6778899998962
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 81122426899605888899999999999987712999999889999999999992994211122369998888998999
Q 000556 908 KQETFARISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRK 987 (1426)
Q Consensus 908 ~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrk 987 (1426)
.. .+...+|++|+..+.+.+|++|++.+.+.++... .+.+ .+.+.++.+++.+... .+ ..|||||||
T Consensus 66 ~~--~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~-~~-----~~LSgG~~q 132 (200)
T d1sgwa_ 66 TK--VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKN----EIMDALESVEVLDLKK-KL-----GELSQGTIR 132 (200)
T ss_dssp GG--GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTS-BG-----GGSCHHHHH
T ss_pred HH--HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCC-CC-----CCCCCCHHH
T ss_conf 67--3670899950135788828999999999754886-3799----9999998748856301-26-----868971888
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 899999996299857882999999999999999999998738988999944887789963066989916
Q 000556 988 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKR 1056 (1426)
Q Consensus 988 RlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~ 1056 (1426)
|+.||++|+.+|++++|||||+|||..++..+++.++++.+++.++|+++|+. .+.+|.+..|.+
T Consensus 133 rv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 133 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 89999988649989998686201699999999999999986799999999162----544161234010
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2.5e-38 Score=248.82 Aligned_cols=184 Identities=18% Similarity=0.242 Sum_probs=149.3
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 15741305789488499998599995899999996498999982009999684089987651599964788889999999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVR 244 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D~~~~~lTVr 244 (1426)
++||+|+|+.+++|++++|+||+|||||||+++|+|.++|. +|+|.+||.++.+. +..++|++|+..+...+|++
T Consensus 14 ~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~ 88 (200)
T d1sgwa_ 14 KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVE 88 (200)
T ss_dssp SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHH
T ss_conf 92884208898599899999999971999999996620567---78899998962673--67089995013578882899
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99998545117883256769989986430999999968999998622233558999999991994323433347556667
Q 000556 245 ETLAFSARCQGVGSRYELLTELARRENEAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLEVCADTMVGDEMIRGI 324 (1426)
Q Consensus 245 EtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~pd~d~d~~~~a~~~~~~~~~~~~d~il~~LGL~~~~dT~VG~~~~rgL 324 (1426)
|++.+.+...+.... .+ .+...++.+++.+. +..+ ..|
T Consensus 89 ~~l~~~~~~~~~~~~---------------------~~---------------~~~~~l~~~~~~~~-~~~~-----~~L 126 (200)
T d1sgwa_ 89 DYLKAVASLYGVKVN---------------------KN---------------EIMDALESVEVLDL-KKKL-----GEL 126 (200)
T ss_dssp HHHHHHHHHTTCCCC---------------------HH---------------HHHHHHHHTTCCCT-TSBG-----GGS
T ss_pred HHHHHHHHHCCCCCC---------------------HH---------------HHHHHHHHCCCCCC-CCCC-----CCC
T ss_conf 999999975488637---------------------99---------------99999987488563-0126-----868
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECC
Q ss_conf 8667558999999715984748857998999898999999999977604985999994490048730594999629
Q 000556 325 SGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSD 400 (1426)
Q Consensus 325 SGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~ 400 (1426)
|||||||+.+|++++.+|++++|||||+|||..+...+++.|+++.+. +++++++.||. .+.+|.+..|.+
T Consensus 127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSC----CTTSSEEEEGGG
T ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECH----HHHCCHHHHEEE
T ss_conf 971888899999886499899986862016999999999999999867-99999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.47 E-value=9.6e-16 Score=110.46 Aligned_cols=80 Identities=13% Similarity=0.036 Sum_probs=37.4
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCEE
Q ss_conf 78667558999999715984748857998999898999999999977604985999994490048730594999629929
Q 000556 324 ISGGERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDIILLSDGQI 403 (1426)
Q Consensus 324 LSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~IilL~~G~i 403 (1426)
+++|+++|..+++++..+|+++++|||... ..........+.+.....+.+++++.|+ .+...+.|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~--~~~~~~~~~~l~~~l~~~~~~il~~~h~--~~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKM--ELFSKKFRDLVRQIMHDPNVNVVATIPI--RDVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTT--GGGCHHHHHHHHHHHTCTTSEEEEECCS--SCCSHHHHHHHTCTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCC--CHHHHHHHHHHHHHHCCCCCEEEEEECC--HHHHHHHCEEEEEECCEE
T ss_conf 532013789999997409974230277731--0045799999998750579789999744--778986365998719999
Q ss_pred EEEC
Q ss_conf 9953
Q 000556 404 VYQG 407 (1426)
Q Consensus 404 vy~G 407 (1426)
+.-+
T Consensus 158 ~~v~ 161 (178)
T d1ye8a1 158 IELT 161 (178)
T ss_dssp EECC
T ss_pred EEEC
T ss_conf 9989
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.37 E-value=1.9e-14 Score=102.50 Aligned_cols=159 Identities=15% Similarity=0.071 Sum_probs=94.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEEC--CCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 8999646899646799535189778637999999590278112242689960--58888999999999999877129999
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCE--QNDIHSPFVTVYESLLYSAWLRLPPE 946 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~--Q~d~~~~~lTv~E~l~f~a~lr~~~~ 946 (1426)
+++|.||||+|||||++.|+|... ...|.+...+.+......+ .++.. ..+...... . ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~------~~~~~~~~ 69 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFS--S------KFFTSKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC------C--CEEEEEETTCCEEEEE--E------TTCCCSSE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC--CCCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHH--H------HHHHHHHH
T ss_conf 899998999389999999981488--8864699877132888876--5311233667778875--4------11345544
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf 99889999999999992994211122369998888998999899999996299857882999999999999999999998
Q 000556 947 VDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1026 (1426)
Q Consensus 947 ~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~ 1026 (1426)
.. + .+. +. ....+++|++++..++.++..+|+++++|||+...+ .....+..+.++
T Consensus 70 ~~---~----------~~~----~~-----~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~ 125 (178)
T d1ye8a1 70 VG---S----------YGV----NV-----QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQI 125 (178)
T ss_dssp ET---T----------EEE----CH-----HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHH
T ss_pred HH---H----------HHC----CC-----CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHH
T ss_conf 30---2----------303----76-----256653201378999999740997423027773100--457999999987
Q ss_pred HH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 73-89889999448877899630669899169399997699
Q 000556 1027 VD-TGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPL 1066 (1426)
Q Consensus 1027 ~~-~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~ 1066 (1426)
.+ .+.+++++.|+.+ +....|++..+. +|+++.-++.
T Consensus 126 l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 126 MHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp HTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred HCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCEEEEECCC
T ss_conf 5057978999974477--898636599871-9999998996
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=4.7e-09 Score=69.50 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 8899899989999999----6299857882999999999999999999998738988999944887789963066989
Q 000556 980 GLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFL 1053 (1426)
Q Consensus 980 glSgGqrkRlsIa~~L----~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~l 1053 (1426)
.+|.|||+.+.++..+ ..+++++++|||-++|++.....+.+.++..++ +.-||+|+|.| ++.+.+|++..
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-88799998988--99973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=2.3e-09 Score=71.35 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=60.8
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 66678667558999999----71598474885799899989899999999997760498599999449004873059499
Q 000556 321 IRGISGGERKRVTTGEM----MVGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaea----Lv~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~Ii 396 (1426)
...+|+|||+...++.. ...++++++.|||-++|++.....+.+.|++.+. + +-++ +..|+|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~-~Qvi-itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--H-TQFI-VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--T-SEEE-EECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--C-CEEE-EEECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--8-8799-9989889997324289
Q ss_pred E--ECCC
Q ss_conf 9--6299
Q 000556 397 L--LSDG 401 (1426)
Q Consensus 397 l--L~~G 401 (1426)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=8e-10 Score=74.20 Aligned_cols=74 Identities=15% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 88899899989999999----62998578829999999999999999999987389889999448877899630669899
Q 000556 979 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLM 1054 (1426)
Q Consensus 979 ~glSgGqrkRlsIa~~L----~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll 1054 (1426)
..+|||||.++++|.-+ ..++++++||||+++||......+.+.|++++..+.-+|+|+|+| ++.+..|.++..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=1.4e-07 Score=60.37 Aligned_cols=75 Identities=17% Similarity=0.359 Sum_probs=57.9
Q ss_pred CCCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEE
Q ss_conf 666786675589999997----1598474885799899989899999999997760498599999449004873059499
Q 000556 321 IRGISGGERKRVTTGEMM----VGPALALFMDEISTGLDSSTTFQIVNCLKQHVHINSGTAVISLLQPAPETYDLFDDII 396 (1426)
Q Consensus 321 ~rgLSGGQKkRvsiaeaL----v~~~~vLlLDEpTSGLDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei~~lFD~Ii 396 (1426)
+.-+|||||.++++|-.+ +.+++++++|||.++||......+.+.|++++. ..+-++ +..|.|++.+.+|.++
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~ 406 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALV 406 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEE
T ss_conf 3332230479999999999954799977999688777899999999999999728--998899-9958789997366179
Q ss_pred EE
Q ss_conf 96
Q 000556 397 LL 398 (1426)
Q Consensus 397 lL 398 (1426)
..
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.11 E-value=0.00014 Score=42.07 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=27.3
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 1574130578948849999859999589999999649
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+-|+++.+-++||++++|.|+||+|||||+.-++-.
T Consensus 22 ~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp CTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 3668887469789808999947999799999999972
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.99 E-value=7.2e-05 Score=43.85 Aligned_cols=154 Identities=14% Similarity=0.108 Sum_probs=72.8
Q ss_pred EEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 44019999479089996468996467995351897--7863799999959027811224268996058888999999999
Q 000556 857 LNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK--TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934 (1426)
Q Consensus 857 L~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~--~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~ 934 (1426)
|+.+.+-++||+++.|.|++|+||||++.-++-.. ..+. .+.|+. ..++..+.
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-------------------~v~~~s------~E~~~~~~ 79 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-------------------KVGLAM------LEESVEET 79 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-------------------CEEEEE------SSSCHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CEEEEE------ECCCHHHH
T ss_conf 88874697898089999479997999999999726553366-------------------345764------01111357
Q ss_pred H-HHHH-HHCCCCCCCHHHHH-----HHHHHHHHHC-CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9-9987-71299999988999-----9999999992-9942111223699988889989998999999962998578829
Q 000556 935 L-LYSA-WLRLPPEVDSETRK-----MFIEEVMELV-ELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1006 (1426)
Q Consensus 935 l-~f~a-~lr~~~~~~~~~~~-----~~v~~vl~~l-~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDE 1006 (1426)
. .+.+ ....+.......+. ...+++++.+ +...... . +........+.....-...--.+|+++++|-
T Consensus 80 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 80 AEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHL-Y---DSFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEE-E---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEE-E---CCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 76999986458710101222221456778889887403521466-2---1433106899999865432136762599705
Q ss_pred C-----CCCC--CHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 9-----9999--999999999999998738-9889999448
Q 000556 1007 P-----TSGL--DARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1039 (1426)
Q Consensus 1007 P-----TsgL--D~~sa~~i~~~l~~~~~~-g~Tvi~t~Hq 1039 (1426)
. ..+- +......+++.++++|++ +++|+++.|-
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 42120346544306778999999999765016552031035
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=0.00019 Score=41.33 Aligned_cols=46 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
Q ss_conf 15984748857998---9--99898999999999977604985999994490
Q 000556 339 VGPALALFMDEIST---G--LDSSTTFQIVNCLKQHVHINSGTAVISLLQPA 385 (1426)
Q Consensus 339 v~~~~vLlLDEpTS---G--LDs~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~ 385 (1426)
..+++++++|-.+. + -|.....++++.|+.++...+.++++ +||+.
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~-v~H~~ 180 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF-LHHAS 180 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE-EEEC-
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEH-HHHCC
T ss_conf 2676589628135422665232256899998877776447975401-31005
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.94 E-value=6e-05 Score=44.34 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.7
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 05789488499998599995899999996498
Q 000556 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 171 vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
+.|-+++|++++|.||||||||+|+.-++-..
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~ 50 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENA 50 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 56898698499999189999999999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.86 E-value=8.1e-05 Score=43.54 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH-HHHHHHHHHHCCCEEEEEECCCCHHHHHH
Q ss_conf 89998999999962998578829999999999999-99999998738988999944887789963
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI-VMRTVRNTVDTGRTVVCTIHQPGIDIFDA 1047 (1426)
Q Consensus 984 GqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~-i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~ 1047 (1426)
.|-+++.-....+.+.+++++||.-+|-|+..... ....+..+.+.+..+++++|.. ++.++
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--33322
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.83 E-value=0.00025 Score=40.50 Aligned_cols=61 Identities=15% Similarity=0.072 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEEECCCHHHHHH
Q ss_conf 7558999999715984748857998999898999999-999977604985999994490048730
Q 000556 328 ERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVN-CLKQHVHINSGTAVISLLQPAPETYDL 391 (1426)
Q Consensus 328 QKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~-~Lr~~a~~~~~tvvisl~Qp~~ei~~l 391 (1426)
|-+|++-.-...+..++.++||+.+|-|+.....+.. .+..+.. .+.+++++.|. .++.++
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~--~eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHY--FELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCC--HHHHTC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHH-CCCCEEEEEEC--HHHHHH
T ss_conf 678898775028977278554545686233200258888888862-37613786520--233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.82 E-value=0.00013 Score=42.24 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf 89998999999962998578829999999999999999-99998738-988999944887
Q 000556 984 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR-TVRNTVDT-GRTVVCTIHQPG 1041 (1426)
Q Consensus 984 GqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~-~l~~~~~~-g~Tvi~t~Hqps 1041 (1426)
.|.+|+.-......+.+++++||+-+|-++.....+.. .++.+... ++.+++|+|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.80 E-value=6.6e-05 Score=44.08 Aligned_cols=27 Identities=44% Similarity=0.593 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
|-+-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=0.00057 Score=38.32 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEECC
Q ss_conf 675589999997159847488579989998989999999-9997760498599999449
Q 000556 327 GERKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNC-LKQHVHINSGTAVISLLQP 384 (1426)
Q Consensus 327 GQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~Iv~~-Lr~~a~~~~~tvvisl~Qp 384 (1426)
.|-+|++-.-...++.+++++||+.+|-++.....+... +..+.......++++.|.+
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99999999997454660885322235877456667898764543204544289852468
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.65 E-value=1.9e-05 Score=47.40 Aligned_cols=34 Identities=26% Similarity=0.433 Sum_probs=24.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8849999859999589999999649899998200999
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~ 213 (1426)
+|+.++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~---T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC--------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---CCCCC
T ss_conf 69808997889877888877305355501---06842
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.52 E-value=3.6e-05 Score=45.68 Aligned_cols=27 Identities=44% Similarity=0.565 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.|++.+|.|||||||||+.+.|+.++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.43 E-value=0.0024 Score=34.56 Aligned_cols=33 Identities=30% Similarity=0.474 Sum_probs=21.2
Q ss_pred EEECC-EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 74130-5789488499998599995899999996
Q 000556 167 ILKDV-SGIIKPGRMTLLLGPPASGKTTLLLALA 199 (1426)
Q Consensus 167 IL~~v-Sg~i~pG~lt~IlGpsGSGKSTLL~aLa 199 (1426)
-|+++ +|-+++|+++.|.|+||+|||+|+.-++
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 7988556899698399999479999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.39 E-value=4.4e-05 Score=45.16 Aligned_cols=27 Identities=37% Similarity=0.699 Sum_probs=23.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 849999859999589999999649899
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
|++.+|+||||||||||++.|..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.37 E-value=5.7e-05 Score=44.49 Aligned_cols=34 Identities=21% Similarity=0.521 Sum_probs=26.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 790899964689964679953518977863799999
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~ 901 (1426)
+|..++++|+||+|||||+|.|.+... .-+|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~--~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC--CC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHCCCCC
T ss_conf 698089978898778888773053555--0106842
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=4.9e-05 Score=44.89 Aligned_cols=25 Identities=32% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999589999999649899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
+++|.|+||||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.30 E-value=4.7e-05 Score=44.96 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=23.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..+++..|+|||||||||+.+.|+.++.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.30 E-value=2.2e-05 Score=47.02 Aligned_cols=34 Identities=24% Similarity=0.450 Sum_probs=25.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEE
Q ss_conf 8849999859999589999999649899998200999
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVT 213 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~ 213 (1426)
.|+.++++|+||.|||||+|+|.|...-. .|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~---t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHH---HCCCC
T ss_conf 35649998778734878987515176764---03555
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.29 E-value=0.0011 Score=36.52 Aligned_cols=154 Identities=19% Similarity=0.204 Sum_probs=73.9
Q ss_pred EEEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 78440199994790899964689964679953518977863799999959027811224268996058888999999999
Q 000556 855 VLLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYES 934 (1426)
Q Consensus 855 ~iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~ 934 (1426)
.++.+ +.||+++.|.|++|+|||||+--|+.....+. -.+.+.+.. ...+-|+..++.. -.+.+-
T Consensus 21 ~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~----~~~~~~~~~----~~~vl~~~~E~~~---~~~~~R 85 (274)
T d1nlfa_ 21 YVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIAGGP----DLLEVGELP----TGPVIYLPAEDPP---TAIHHR 85 (274)
T ss_dssp EEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHHTCC----CTTCCCCCC----CCCEEEEESSSCH---HHHHHH
T ss_pred HHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC----CCCCCCCCC----CCCEEEEECCCHH---HHHHHH
T ss_conf 98689----55895899992899989999999999997699----721112357----8736898512349---999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC---C-
Q ss_conf 999877129999998899999999999929942111223699988889989998999999962998578829999---9-
Q 000556 935 LLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G- 1010 (1426)
Q Consensus 935 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTs---g- 1010 (1426)
+.+.. .+.+.... ......+.+....+... ....-..... -.....+|+++++|--+. +
T Consensus 86 --l~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~lvviD~l~~~~~~~ 148 (274)
T d1nlfa_ 86 --LHALG---AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAPEWFDG---LKRAAEGRRLMVLDTLRRFHIEE 148 (274)
T ss_dssp --HHHHH---TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSHHHHHH---HHHHHTTCSEEEEECGGGGCCSC
T ss_pred --HHHHH---HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHHHHHHH---HHHHCCCCCEEECCCHHHHCCCC
T ss_conf --99986---23686665----31233323214567420-----3578999999---88752676589628135422665
Q ss_pred -CCHHHHHHHHHHHHHHHHC-CCEEEEEECCC
Q ss_conf -9999999999999998738-98899994488
Q 000556 1011 -LDARAAAIVMRTVRNTVDT-GRTVVCTIHQP 1040 (1426)
Q Consensus 1011 -LD~~sa~~i~~~l~~~~~~-g~Tvi~t~Hqp 1040 (1426)
-|......+++.++.++.. +++|+++.|..
T Consensus 149 ~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 149 ENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 23225689999887777644797540131005
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=7.9e-05 Score=43.60 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=27.7
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 57894884999985999958999999964989
Q 000556 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 172 Sg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.|-++||+++.|.||||||||||+.-++....
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 58985997999995899999999999999998
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.21 E-value=9.7e-05 Score=43.07 Aligned_cols=26 Identities=38% Similarity=0.437 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
+.+++.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.17 E-value=0.0001 Score=42.89 Aligned_cols=25 Identities=36% Similarity=0.631 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
++.+|.|||||||||+.+.|+.+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.17 E-value=9.2e-05 Score=43.18 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+..+|.||||||||||.++|+.++.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.15 E-value=0.0003 Score=40.03 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=40.5
Q ss_pred EEEC-CEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 7413-0578948849999859999589999999649899998200999968408998765159996478
Q 000556 167 ILKD-VSGIIKPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234 (1426)
Q Consensus 167 IL~~-vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~ 234 (1426)
-|++ +.|-+++|+++.|.|+||+|||+|+.-++-..-.. ...+.+.-.........+.+.|+.-+
T Consensus 22 ~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~e 87 (258)
T d2i1qa2 22 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNP---EFLFYDEEAVSKGEVAQPKAVYIDTE 87 (258)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCG---GGEECCTTTSCTTTTSSEEEEEEESS
T ss_pred HHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC---CCCCEEEEECCCCHHCCCEEEEEEEC
T ss_conf 8997207986288599999179999899999999999853---79743775300310038519999956
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.14 E-value=0.00012 Score=42.47 Aligned_cols=28 Identities=36% Similarity=0.590 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
++|--.+|.|||||||||+.+.|+-+++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.12 E-value=7.5e-05 Score=43.74 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=12.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.-+.+.|+.||||||||++|.+.
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~ 189 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEF 189 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGG
T ss_pred HCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 3788899940356625789998653
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.09 E-value=9.9e-05 Score=43.00 Aligned_cols=26 Identities=27% Similarity=0.236 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
++..|.|++|||||||+..|..++..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 09999809999899999999999986
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.09 E-value=0.00018 Score=41.46 Aligned_cols=28 Identities=32% Similarity=0.344 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
++|.+..+.|+|||||||+-++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00016 Score=41.78 Aligned_cols=27 Identities=26% Similarity=0.490 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.|.+..|+||||||||||.+.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=4.4e-05 Score=45.18 Aligned_cols=26 Identities=46% Similarity=0.677 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.02 E-value=0.00023 Score=40.71 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998599995899999996498
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
+++.+.||||||||||.+.|....
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799998999999999999999957
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.01 E-value=0.00019 Score=41.30 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999985999958999999964989
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+++.|.|||||||||+.+.|+.++.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.00 E-value=0.00025 Score=40.58 Aligned_cols=27 Identities=41% Similarity=0.609 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488499998599995899999996498
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
++|--.+++|||||||||..+.|+-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.99 E-value=0.00016 Score=41.65 Aligned_cols=28 Identities=29% Similarity=0.460 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.+.+..|+|||||||||+.+.|+-++.
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6782899989999987999999999869
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.98 E-value=0.00024 Score=40.69 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.++|.||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.98 E-value=7.2e-05 Score=43.83 Aligned_cols=34 Identities=29% Similarity=0.434 Sum_probs=26.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 790899964689964679953518977863799999
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRKTGGYITGNIT 901 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~i~ 901 (1426)
.|..++++|+||+|||||+|.|.+... ..+|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.96 E-value=0.00021 Score=41.02 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
..+|+|+||+|||||+++|.|+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999899998799999985298
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.96 E-value=0.00019 Score=41.34 Aligned_cols=30 Identities=33% Similarity=0.450 Sum_probs=26.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 578948849999859999589999999649
Q 000556 172 SGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 172 Sg~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.|=+++|+++.|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.96 E-value=0.0002 Score=41.09 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 90899964689964679953518977
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
|.++.|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.95 E-value=0.00029 Score=40.16 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998599995899999996498
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.+.+|+|||||||||+.+.|+-++
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.95 E-value=0.00021 Score=40.94 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+.+|+|||||||||+.+.|+.++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0033 Score=33.68 Aligned_cols=29 Identities=41% Similarity=0.604 Sum_probs=22.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94884999985999958999999964989
Q 000556 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 175 i~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+++.+-+++.||||+|||++.++||..+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 99888678668998882289999999829
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.92 E-value=0.00026 Score=40.45 Aligned_cols=23 Identities=52% Similarity=0.583 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+|.|||||||||+.+.|+-++.
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.00029 Score=40.14 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=26.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 8849999859999589999999649899998200999968408
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~ 219 (1426)
|+.-.+++||||+|||.|.++||..+.. --+.+++.++
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~-----~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC-----CEEEEEGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCC-----CHHCCCCCCC
T ss_conf 9866999899998888999998621322-----1000344330
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.83 E-value=0.00034 Score=39.73 Aligned_cols=29 Identities=38% Similarity=0.393 Sum_probs=25.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 57894884999985999958999999964
Q 000556 172 SGIIKPGRMTLLLGPPASGKTTLLLALAG 200 (1426)
Q Consensus 172 Sg~i~pG~lt~IlGpsGSGKSTLL~aLaG 200 (1426)
.|=+++|++++|.||||||||||..-++-
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69955887999985898988999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.79 E-value=0.00058 Score=38.28 Aligned_cols=26 Identities=31% Similarity=0.511 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 79089996468996467995351897
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.76 E-value=0.00049 Score=38.77 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
++.+|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.76 E-value=0.00046 Score=38.94 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=20.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48849999859999589999999649
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++-++++++|+|||||||+.+.|+..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99989999899999899999999976
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.00054 Score=38.51 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
..+|+|||||||||..+.|+-++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.70 E-value=0.00048 Score=38.79 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.00045 Score=38.96 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 790899964689964679953518977
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
.|.++.|+||||+||+||++.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.69 E-value=0.00046 Score=38.94 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..|+|||||||||+.+.|+-++.
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.00031 Score=39.93 Aligned_cols=27 Identities=37% Similarity=0.410 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.|....+.|+|||||||+-+.|+-++.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 996999889999999999999999997
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.68 E-value=0.00062 Score=38.11 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=34.8
Q ss_pred HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 9999962998578829999999999999999999987389889999448877899630669
Q 000556 991 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDEL 1051 (1426)
Q Consensus 991 Ia~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l 1051 (1426)
+..+|=.+|.+++..|.. |..++...+ +.+.+|.-|+.|+|-.+. +..++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~a--~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNTA--VGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSSS--HHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCCH--HHHHHHH
T ss_conf 999984138889845768---759999999----997249858998336766--7665432
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.00051 Score=38.64 Aligned_cols=25 Identities=44% Similarity=0.663 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
...++.||||+||||+.++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.00045 Score=38.97 Aligned_cols=22 Identities=45% Similarity=0.517 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.++|+|++|||||||++.|+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.00048 Score=38.79 Aligned_cols=31 Identities=29% Similarity=0.283 Sum_probs=26.5
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0578948849999859999589999999649
Q 000556 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 171 vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
+.|-+++|++++|.||||||||+|...++..
T Consensus 30 lgGGip~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 30 LGGGIESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp TTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HCCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 1699768979999889988788999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.64 E-value=0.00083 Score=37.35 Aligned_cols=44 Identities=20% Similarity=0.380 Sum_probs=32.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 9999859999589999999649899998200999968408998765159996478
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQH 234 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~ 234 (1426)
=.+++||+|||||-|.+.||+.++. --+..+...+. .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.64 E-value=0.003 Score=33.96 Aligned_cols=24 Identities=50% Similarity=0.737 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-+++.||||+|||+|.++|++.+.
T Consensus 44 giLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 488766898883599999998739
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.63 E-value=0.00055 Score=38.45 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.++|+|+|++|||||++.|.|.-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.63 E-value=0.00053 Score=38.55 Aligned_cols=26 Identities=31% Similarity=0.286 Sum_probs=20.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999985999958999999964989
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
....+|.||||||||||++.|...+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 32897438999989999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.61 E-value=0.013 Score=29.93 Aligned_cols=162 Identities=15% Similarity=0.067 Sum_probs=77.7
Q ss_pred EEEE-EEEEECCCEEEEECCCCCCHHHHHHHHCCC--CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 4401-999947908999646899646799535189--7786379999995902781122426899605888899999999
Q 000556 857 LNGL-SGAFRPGVLTALMGVSGAGKTTLMDVLSGR--KTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYE 933 (1426)
Q Consensus 857 L~~v-s~~~~pG~~~al~G~sGaGKTTLl~~Lag~--~~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E 933 (1426)
|+++ .|-+++|+++.|.|++|+|||+|..-++.. ..++ ....|+.-+ .+..+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~-------------------~~~~~~s~e------~~~~~ 69 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD-------------------EPGVFVTFE------ETPQD 69 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC-------------------CCEEEEESS------SCHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCCCCCCC------CCHHH
T ss_conf 98855689969839999947999999999999999998568-------------------874201266------79999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH--HCCCEEEEECCCCC
Q ss_conf 9999877129999998899999999999929942111223699988889989-99899999996--29985788299999
Q 000556 934 SLLYSAWLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQ-RKRLTIAVELV--ANPSIIFMDEPTSG 1010 (1426)
Q Consensus 934 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGq-rkRlsIa~~L~--~~p~il~lDEPTsg 1010 (1426)
.......... . .++..+.............. ......... ...+.-....+ .+|++++.|--+.=
T Consensus 70 ~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFGW----D-------LAKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGTC----C-------HHHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCCC----C-------HHHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998499----8-------48988714302444210335-4444302458999999999988631222002078899
Q ss_pred C-----CHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCEEEEEE
Q ss_conf 9-----9999999999999987389889999448877--------8996306698991
Q 000556 1011 L-----DARAAAIVMRTVRNTVDTGRTVVCTIHQPGI--------DIFDAFDELFLMK 1055 (1426)
Q Consensus 1011 L-----D~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~--------~i~~~fD~l~ll~ 1055 (1426)
. +......+.+.++...+.++|++++.|.... ..-..+|.++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 8760572678999999999998639716884210255422246762335362999988
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.61 E-value=0.00057 Score=38.36 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
++..|+|||||||+||++.|..+.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 71999998999999999999970976
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.59 E-value=0.00055 Score=38.44 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+||+|++|+|||||++.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.59 E-value=0.0005 Score=38.68 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..+|+|||||||||+-+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.56 E-value=0.00063 Score=38.07 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.+++|+||+|||||+++|.|+.
T Consensus 3 I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999988999999996898
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00051 Score=38.62 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+..-+.+.||+|+|||++.+.||..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.00056 Score=38.39 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
...+.|||||||||+-+.||-++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.00051 Score=38.62 Aligned_cols=28 Identities=39% Similarity=0.667 Sum_probs=17.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
++.+-.++.||||+|||+|.+++++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 9887578878998763047788787718
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=3.3e-05 Score=45.96 Aligned_cols=33 Identities=24% Similarity=0.172 Sum_probs=24.5
Q ss_pred ECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 1305789488499998599995899999996498
Q 000556 169 KDVSGIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 169 ~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
++.+..+.|| +++|.||+||||||+|.||.--+
T Consensus 16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 0279974998-08998899998799999999996
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.54 E-value=0.0048 Score=32.66 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHHHHCCCEEEEECCCCCCC----------HHHHHHHHHHHHHH---H-HCCCEEEEEECCCCHHHHHH
Q ss_conf 9989998999999962998578829999999----------99999999999998---7-38988999944887789963
Q 000556 982 STEQRKRLTIAVELVANPSIIFMDEPTSGLD----------ARAAAIVMRTVRNT---V-DTGRTVVCTIHQPGIDIFDA 1047 (1426)
Q Consensus 982 SgGqrkRlsIa~~L~~~p~il~lDEPTsgLD----------~~sa~~i~~~l~~~---~-~~g~Tvi~t~Hqps~~i~~~ 1047 (1426)
...++-|-.+..+-...|.|+++||--.=+. ......+...+..+ . +.+.-+|+|++.|.. +
T Consensus 84 ~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~-l--- 159 (265)
T d1r7ra3 84 ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI-I--- 159 (265)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTT-T---
T ss_pred CHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHH-C---
T ss_conf 158999999999986398435687546324557876788737999999999999628677799899991799222-7---
Q ss_pred CCEEEEEECC--CEEEEECCCCCCH
Q ss_conf 0669899169--3999976998641
Q 000556 1048 FDELFLMKRG--GQEIYVGPLGRHS 1070 (1426)
Q Consensus 1048 fD~l~ll~~g--G~~vy~Gp~g~~~ 1070 (1426)
|.-+ +..| .+.++++++....
T Consensus 160 -d~al-~r~gRf~~~i~~~~p~~~~ 182 (265)
T d1r7ra3 160 -DPAI-LRPGRLDQLIYIPLPDEKS 182 (265)
T ss_dssp -SCGG-GSSTTSEEEEECCCCCCHH
T ss_pred -CHHH-HCCCCCCEEEEECCHHHHH
T ss_conf -9978-0787764799956607888
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.0008 Score=37.46 Aligned_cols=25 Identities=48% Similarity=0.717 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999589999999649899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.0005 Score=38.72 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999589999999649899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
-.+|+||||||||||++.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.53 E-value=0.00074 Score=37.67 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.52 E-value=0.0006 Score=38.20 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-+.+.||+|+|||+|.++|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.51 E-value=0.00082 Score=37.38 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.++|+|++|+|||||++.|.|.-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.48 E-value=0.00081 Score=37.41 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
-.+|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.46 E-value=0.0009 Score=37.13 Aligned_cols=24 Identities=38% Similarity=0.325 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0006 Score=38.22 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.+|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.44 E-value=0.00091 Score=37.09 Aligned_cols=23 Identities=57% Similarity=0.842 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..|+|||||||||+-+.|+-++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.44 E-value=0.00093 Score=37.06 Aligned_cols=22 Identities=36% Similarity=0.680 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
..|+|||||||||+.+.|+-++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999999899999999996
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.44 E-value=0.00098 Score=36.90 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=16.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++++|++|+|||||+++|.|.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999778
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.43 E-value=0.00076 Score=37.58 Aligned_cols=25 Identities=44% Similarity=0.664 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+=.++.||||+|||++.++++....
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 6468766998883089999998748
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.43 E-value=0.00055 Score=38.45 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|+|++|||||+++|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.00085 Score=37.27 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.41 E-value=0.0012 Score=36.37 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=21.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.0011 Score=36.64 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.+|+|.||+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999997899999995888
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.37 E-value=0.0012 Score=36.46 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..+|-|||||||||..+.||-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=4.6e-05 Score=45.04 Aligned_cols=33 Identities=27% Similarity=0.232 Sum_probs=26.9
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 8440199994790899964689964679953518
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
-.++.++.+.+| ++.|+|+|||||||+|++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.37 E-value=0.00091 Score=37.10 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+|+||||||||||.+.|+.+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.37 E-value=0.0013 Score=36.13 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999859999589999999649899998200999968408998765159996478888999
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGE 240 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D~~~~~ 240 (1426)
+.+|.|++||||||+.+.|...+... .....+..++++|.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.35 E-value=0.0011 Score=36.58 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998599995899999996498
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
...+.|.||||+|||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 1598611799888999999999987
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.33 E-value=0.00096 Score=36.96 Aligned_cols=27 Identities=22% Similarity=0.273 Sum_probs=23.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 479089996468996467995351897
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+.|.++.|.|+|||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.00093 Score=37.03 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 479089996468996467995351897
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.32 E-value=0.0011 Score=36.67 Aligned_cols=27 Identities=22% Similarity=0.528 Sum_probs=23.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 479089996468996467995351897
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
++|-.++|+|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0013 Score=36.11 Aligned_cols=29 Identities=41% Similarity=0.634 Sum_probs=19.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78948849999859999589999999649
Q 000556 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
|-+++|++|.+.||||||||||+..++..
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99667358998057774789999999999
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.28 E-value=0.00081 Score=37.40 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=22.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
++.+|.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.28 E-value=0.00081 Score=37.42 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=25.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECC
Q ss_conf 089996468996467995351897-7863799999959
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITISG 904 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~g 904 (1426)
...+|+|++|||||||+..|..+. ..|..-|.|..++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 09999809999899999999999986798379998316
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.25 E-value=0.0013 Score=36.05 Aligned_cols=23 Identities=48% Similarity=0.586 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..|+|+|||||||+.+.||.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.25 E-value=0.0012 Score=36.28 Aligned_cols=23 Identities=52% Similarity=0.780 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+++-||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.25 E-value=0.0014 Score=36.00 Aligned_cols=23 Identities=57% Similarity=0.720 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.++.||||+||||+.++++..+.
T Consensus 48 lll~Gp~G~GKTtla~~iak~l~ 70 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARELF 70 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99978999748799999999987
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.24 E-value=0.0014 Score=35.99 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-..++|+|||||||+-+.||-++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.24 E-value=0.0014 Score=35.91 Aligned_cols=23 Identities=35% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
-++|+|+||+|||||++.|.+.-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0018 Score=35.34 Aligned_cols=21 Identities=48% Similarity=0.847 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|+|++|||||+++|.|.
T Consensus 4 I~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 4 VVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999688
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.22 E-value=0.0017 Score=35.42 Aligned_cols=22 Identities=41% Similarity=0.659 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
..+|+|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.19 E-value=0.0009 Score=37.12 Aligned_cols=23 Identities=43% Similarity=0.598 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..++|+|||||||+-+.||.++.
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.17 E-value=0.0011 Score=36.66 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.17 E-value=0.0017 Score=35.42 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.++.++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.15 E-value=0.001 Score=36.77 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-+||+|++++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=96.15 E-value=0.001 Score=36.79 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|+|++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.13 E-value=0.0014 Score=35.98 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.13 E-value=0.0012 Score=36.35 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-.+++|++|+|||||++.|.+...
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999898999999967887
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.12 E-value=0.0016 Score=35.67 Aligned_cols=21 Identities=43% Similarity=0.547 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|+||+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0018 Score=35.22 Aligned_cols=21 Identities=43% Similarity=0.700 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|.|++|||||+++|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.09 E-value=0.0022 Score=34.78 Aligned_cols=28 Identities=32% Similarity=0.309 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8849999859999589999999649899
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
+...++|.||||+||||+++.|+..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.09 E-value=0.0018 Score=35.35 Aligned_cols=25 Identities=36% Similarity=0.741 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9089996468996467995351897
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
|-.++++|++++|||||++.|.|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.0021 Score=34.87 Aligned_cols=46 Identities=20% Similarity=0.189 Sum_probs=30.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999985999958999999964989999820099996840899876515999647888899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D~~~~ 239 (1426)
+.+|-||+||||||+.+.|+-.+... + +. .....+..++++|.|.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~----~-~~---------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQN----E-VD---------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG----G-SC---------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHH----C-CC---------CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410----1-34---------57884399934653224
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.04 E-value=0.002 Score=35.01 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.+++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0019 Score=35.08 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.+++|+|++|||||++.|.+.-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.01 E-value=0.0015 Score=35.85 Aligned_cols=21 Identities=33% Similarity=0.631 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.00 E-value=0.029 Score=27.88 Aligned_cols=152 Identities=18% Similarity=0.126 Sum_probs=77.0
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHH
Q ss_conf 9999479089996468996467995351897-786379999995902781122426899605888899999999999987
Q 000556 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFVTVYESLLYSA 939 (1426)
Q Consensus 861 s~~~~pG~~~al~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~g~~~~~~~~~~~~~yv~Q~d~~~~~lTv~E~l~f~a 939 (1426)
.|-+++|.++.|.|++|+|||+|..-++... ..+. ...|+.- ..+..+......
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~------e~~~~~~~~~~~ 74 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAY------EESRAQLLRNAY 74 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEES------SSCHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEC------CCCHHHHHHHHH
T ss_conf 689869849999918999999999999999987232-------------------4411212------679999999999
Q ss_pred HHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHH
Q ss_conf 7129999998899999999999929942111223699988889989998999999-962998578829999---999999
Q 000556 940 WLRLPPEVDSETRKMFIEEVMELVELKPLIQSLVGLPGVSGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDARA 1015 (1426)
Q Consensus 940 ~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vG~~~~~glSgGqrkRlsIa~~-L~~~p~il~lDEPTs---gLD~~s 1015 (1426)
.+ .. +.. +. ...+.....+... ......+.- -.|... --.+|.+++.|--+. +.+...
T Consensus 75 ~~--~~--~~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~ 136 (242)
T d1tf7a2 75 SW--GM--DFE-------EM-ERQNLLKIVCAYP-----ESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNNA 136 (242)
T ss_dssp TT--SC--CHH-------HH-HHTTSEEECCCCG-----GGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHHH
T ss_pred HC--CC--CHH-------HH-HHCCCEEEEEEEC-----CHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHHH
T ss_conf 82--99--869-------98-5458617997300-----010179999-9999999840885332204314304899999
Q ss_pred HHHHHHHHHHHHH-CCCEEEEEECCC---------CHHHHHHCCEEEEEE
Q ss_conf 9999999999873-898899994488---------778996306698991
Q 000556 1016 AAIVMRTVRNTVD-TGRTVVCTIHQP---------GIDIFDAFDELFLMK 1055 (1426)
Q Consensus 1016 a~~i~~~l~~~~~-~g~Tvi~t~Hqp---------s~~i~~~fD~l~ll~ 1055 (1426)
....+..+.+.++ .+.+++++.|.. +..+....|.++.|.
T Consensus 137 ~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 137 FRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 99999999999998698399998567512554457764046421699999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.99 E-value=0.0022 Score=34.77 Aligned_cols=21 Identities=33% Similarity=0.286 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+|+|+|.+|||||+++|.|.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0018 Score=35.31 Aligned_cols=24 Identities=29% Similarity=0.594 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-.+||+|.+|+|||||+|.|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 179998999997899999995888
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.99 E-value=0.0017 Score=35.49 Aligned_cols=22 Identities=41% Similarity=0.536 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++||-|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.95 E-value=0.0018 Score=35.22 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0021 Score=34.89 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-.+|++|.+|+|||||++.|.|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.94 E-value=0.0013 Score=36.08 Aligned_cols=28 Identities=43% Similarity=0.399 Sum_probs=24.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.++..++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.93 E-value=0.0022 Score=34.69 Aligned_cols=23 Identities=39% Similarity=0.437 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
++++|+||+|||||++.+.+.-.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99999999899999999967987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.92 E-value=0.0024 Score=34.52 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
-++|+|.||||||||++.|.+.-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999996688
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.91 E-value=0.0018 Score=35.28 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 99964689964679953518977
Q 000556 870 TALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
+.|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0028 Score=34.10 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.4
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9994790899964689964679953518
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 862 ~~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
|-+++|+++.|.|++|+|||||..-++.
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 8985997999995899999999999999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0023 Score=34.68 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0899964689964679953518977
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.88 E-value=0.0033 Score=33.66 Aligned_cols=42 Identities=29% Similarity=0.373 Sum_probs=25.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCC
Q ss_conf 4884999985999958999999964989999820099996840
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHD 218 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~ 218 (1426)
+.|.+..+.|.|||||||+.+.|+-++... ...-.+.++|..
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~-~~~~~~~ldgD~ 63 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 63 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCHH
T ss_conf 998699998999999899999999887774-275089975367
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.85 E-value=0.0011 Score=36.69 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=23.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
.-+++.||||+|||||++.+++.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 70899889985299999999873798
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.84 E-value=0.0024 Score=34.55 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|++|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0019 Score=35.12 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=23.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8849999859999589999999649899
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
.+++.+|-|+.||||||+++.|+.+++.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9988999878887799999999999735
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0012 Score=36.32 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=11.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.++|+|.+++|||||++.|.+.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.81 E-value=0.0028 Score=34.12 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|.+++|||||+|.|.|..
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999799998999999995898
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.80 E-value=0.0021 Score=34.82 Aligned_cols=24 Identities=25% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899964689964679953518977
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
.++|+|++|+|||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.79 E-value=0.0026 Score=34.27 Aligned_cols=29 Identities=41% Similarity=0.612 Sum_probs=24.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 48849999859999589999999649899
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
.|+=++++.||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.78 E-value=0.0045 Score=32.85 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=17.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
|.-...+.||+|+|||.|.+.||+.
T Consensus 122 ~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp ESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8863888779985088999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0033 Score=33.67 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.|.+.++-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0025 Score=34.40 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
..+++|+|++|||||+++|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.77 E-value=0.0029 Score=34.02 Aligned_cols=23 Identities=39% Similarity=0.651 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.76 E-value=0.0031 Score=33.85 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
..+|+|++.||||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.76 E-value=0.0027 Score=34.23 Aligned_cols=25 Identities=32% Similarity=0.267 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-+.+|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.75 E-value=0.002 Score=35.05 Aligned_cols=32 Identities=25% Similarity=0.330 Sum_probs=27.3
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 89488499998599995899999996498999
Q 000556 174 IIKPGRMTLLLGPPASGKTTLLLALAGKLDSS 205 (1426)
Q Consensus 174 ~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~~~ 205 (1426)
.++.+.-.+|.||.||||||||++|.+..++.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99837888999403566257899986530145
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.75 E-value=0.0029 Score=34.02 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 90899964689964679953518977
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.73 E-value=0.0024 Score=34.56 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+.|+|++||||||+.+.|+-+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.73 E-value=0.0026 Score=34.28 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0899964689964679953518
Q 000556 868 VLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag 889 (1426)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.71 E-value=0.0022 Score=34.79 Aligned_cols=22 Identities=27% Similarity=0.569 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468996467995351897
Q 000556 870 TALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+||+|.+++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.70 E-value=0.0028 Score=34.14 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=20.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.69 E-value=0.0034 Score=33.62 Aligned_cols=22 Identities=50% Similarity=0.902 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.68 E-value=0.0026 Score=34.35 Aligned_cols=22 Identities=45% Similarity=0.596 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468996467995351897
Q 000556 870 TALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+.|+||||+|||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0031 Score=33.81 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.59 E-value=0.0021 Score=34.90 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.++.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.58 E-value=0.0031 Score=33.83 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++|+|++|+|||||++.|.+..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.56 E-value=0.0037 Score=33.36 Aligned_cols=26 Identities=38% Similarity=0.498 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47908999646899646799535189
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.56 E-value=0.0048 Score=32.68 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=16.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998599995899999996498
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
++..+++||+|+||||.+-=||.++
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7799998999998899999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0041 Score=33.10 Aligned_cols=23 Identities=39% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.53 E-value=0.0049 Score=32.65 Aligned_cols=27 Identities=22% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.|++.++-|+.||||||+.+.|+.++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0018 Score=35.31 Aligned_cols=26 Identities=42% Similarity=0.457 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 79089996468996467995351897
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.|..+.|+|++||||||+-+.|+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.52 E-value=0.0054 Score=32.38 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-++||.|++||||||+-+.|...
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHHH
T ss_conf 89999689999876899999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=95.49 E-value=0.0095 Score=30.86 Aligned_cols=31 Identities=23% Similarity=0.175 Sum_probs=21.8
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0578948849999859999589999999649
Q 000556 171 VSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 171 vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-+...-.|+=+++.|+||+|||||...|..+
T Consensus 7 ~~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 7 GVLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999999999999808999989999999985
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.49 E-value=0.0043 Score=32.95 Aligned_cols=23 Identities=43% Similarity=0.791 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.++.||||+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.45 E-value=0.0036 Score=33.41 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.++.|+||+||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=95.41 E-value=0.01 Score=30.61 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=22.7
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 74130578948849999859999589999999649
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 167 IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.++. +...-.|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHG-VLLEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEE-EEEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 1789-999999999999818999989999999985
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.41 E-value=0.0054 Score=32.35 Aligned_cols=22 Identities=27% Similarity=0.631 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.++|+|..+||||||+++|.|.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCHHHHHHHHHCC
T ss_conf 5999818989799999999689
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0064 Score=31.92 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=27.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCC
Q ss_conf 8849999859999589999999649899998200999968408
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDM 219 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~ 219 (1426)
|....+++||+|+|||.|.+.||..+. .--|.+|....
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~-----~~~i~~d~s~~ 88 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEY 88 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGC
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCC-----CCEEEECCCCC
T ss_conf 765899977875006999999986336-----77067415444
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.35 E-value=0.005 Score=32.57 Aligned_cols=21 Identities=38% Similarity=0.438 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.33 E-value=0.0056 Score=32.25 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999985999958999999964
Q 000556 180 MTLLLGPPASGKTTLLLALAG 200 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG 200 (1426)
+.+|.|++||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.30 E-value=0.0048 Score=32.68 Aligned_cols=21 Identities=57% Similarity=0.703 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.|.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0044 Score=32.91 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
..-.++|.|++|||||||++.|...
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8328974389999899999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0039 Score=33.20 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
..+.|.||+|+|||||+..++...
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 699998899971999999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.0047 Score=32.72 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
+++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.23 E-value=0.0082 Score=31.24 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=24.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8849999859999589999999649899
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
.|.+.++=|+-||||||+.+.|+-++..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.18 E-value=0.0053 Score=32.42 Aligned_cols=23 Identities=26% Similarity=0.396 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.14 E-value=0.0061 Score=32.05 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.13 E-value=0.0057 Score=32.21 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+||.||+||||||+-+.||...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.0066 Score=31.81 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.0013 Score=36.12 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0058 Score=32.15 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.8
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
..+.|+||+||||||+.+.|+...
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999999899999999985
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.08 E-value=0.014 Score=29.88 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=24.9
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 74130578948849999859999589999999649
Q 000556 167 ILKDVSGIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 167 IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-|+. +.....|+=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.07 E-value=0.0082 Score=31.27 Aligned_cols=51 Identities=25% Similarity=0.397 Sum_probs=32.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 9999859999589999999649899998200999968408998765159996478888999999999998
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIGEMTVRETLAF 249 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D~~~~~lTVrEtL~F 249 (1426)
+++|-|++|||||||...|.-.+... .| ....++.++.+|.+. |-.|-...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY~---t~~~r~~L 79 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFYL---THEDQLKL 79 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGBC---CHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCCC---CHHHHHHH
T ss_conf 99837998788999999999999987---27-------------786067635677778---88999998
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.07 E-value=0.01 Score=30.72 Aligned_cols=26 Identities=35% Similarity=0.313 Sum_probs=18.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 84999985999958999999964989
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..+.+++||+|+||||.+--||.++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 86899989999988999999999999
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0083 Score=31.23 Aligned_cols=28 Identities=32% Similarity=0.504 Sum_probs=24.8
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9994790899964689964679953518
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 862 ~~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
|-+++|+++.|.|++|+|||||..-++.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9986996999983899988999999999
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.04 E-value=0.0048 Score=32.70 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.|+||+||||||+.+.|+-+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.03 E-value=0.0037 Score=33.34 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=30.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999985999958999999964989999820099996840899876515999647888899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDSSLKVSGRVTYNGHDMGEFVPERTAAYISQHDNHIG 239 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~~~~~~G~V~~nG~~~~~~~~~r~~aYV~Q~D~~~~ 239 (1426)
+.+|.|+|||||||+.++|...+.. +| -.++.++|++.|-.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr~ 46 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHRF 46 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CC---------------CCEEEEECCCCCCC
T ss_conf 9999899978099999999999715----69---------------97699947778756
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.02 E-value=0.0094 Score=30.89 Aligned_cols=23 Identities=39% Similarity=0.427 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+++|.+.+|||||+++|.|...
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99993458849999999970344
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.02 E-value=0.0063 Score=31.97 Aligned_cols=37 Identities=24% Similarity=0.453 Sum_probs=26.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 9089996468996467995351897-786379999995
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGRK-TGGYITGNITIS 903 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~ 903 (1426)
.-.++|.|+.|||||||++.|.... ..+..-|-|.+|
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 15986117998889999999999876368751344346
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0082 Score=31.24 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999619
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.99 E-value=0.0057 Score=32.20 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.96 E-value=0.0078 Score=31.37 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.|.+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.006 Score=32.08 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+.|.|++|+||||+-+.||-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.93 E-value=0.0062 Score=32.01 Aligned_cols=29 Identities=38% Similarity=0.592 Sum_probs=21.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78948849999859999589999999649
Q 000556 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
|-+++|++|.+.||||||||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.93 E-value=0.0075 Score=31.47 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.92 E-value=0.0062 Score=31.99 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468996467995351897
Q 000556 870 TALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.01 Score=30.70 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.89 E-value=0.0064 Score=31.92 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.88 E-value=0.0087 Score=31.09 Aligned_cols=30 Identities=47% Similarity=0.709 Sum_probs=20.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789488499998599995899999996498
Q 000556 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
|-++.|++|.+-||+|||||||...++...
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 986675478980587652279999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.88 E-value=0.0088 Score=31.07 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.++|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.87 E-value=0.0059 Score=32.12 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
++.++|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.86 E-value=0.0087 Score=31.10 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999829
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.85 E-value=0.0063 Score=31.95 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.1
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0899964689964679953518977
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.82 E-value=0.0084 Score=31.19 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=94.82 E-value=0.0096 Score=30.83 Aligned_cols=24 Identities=29% Similarity=0.267 Sum_probs=15.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998599995899999996498
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
...+++||+|+||||.+-=||-++
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999999899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.80 E-value=0.007 Score=31.67 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.013 Score=30.04 Aligned_cols=23 Identities=43% Similarity=0.681 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+++|.+|+|||||++.+.+.-.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCCCHHHHHHHHHCCCC
T ss_conf 99989899399999999818856
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.0087 Score=31.09 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
++++|++|+|||||++.+.+.-
T Consensus 6 i~viG~~~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999979989999999998098
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.76 E-value=0.0094 Score=30.90 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=20.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 790899964689964679953518
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
.-+++-++|++||||||+.+-|+.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.75 E-value=0.0092 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.612 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.72 E-value=0.0045 Score=32.86 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++||.|+|||||||+.+.|...
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i 27 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQI 27 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978099999999999
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.70 E-value=0.032 Score=27.59 Aligned_cols=24 Identities=38% Similarity=0.371 Sum_probs=20.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 908999646899646799535189
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
...++++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.70 E-value=0.01 Score=30.69 Aligned_cols=24 Identities=29% Similarity=0.312 Sum_probs=17.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998599995899999996498
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
...+++||+|+||||.+--||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.69 E-value=0.0094 Score=30.90 Aligned_cols=21 Identities=38% Similarity=0.651 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.65 E-value=0.0089 Score=31.04 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.65 E-value=0.0093 Score=30.93 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-.++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.65 E-value=0.0072 Score=31.60 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.63 E-value=0.0083 Score=31.21 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
|+.-+.++||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.61 E-value=0.0092 Score=30.95 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+++++|.+|+||||+.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.60 E-value=0.01 Score=30.60 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.+|+|||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999719
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.60 E-value=0.0083 Score=31.21 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+.|+|++||||||+-+.||-+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.0095 Score=30.86 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.59 E-value=0.059 Score=26.01 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=27.4
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 844019999479089996468996467995351897
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++.....+ .|.-+.+.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 178999999-99999998189999899999999859
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.011 Score=30.35 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
++++|.+|+|||||++.+.+.-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989939999999997199
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.011 Score=30.51 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.51 E-value=0.011 Score=30.42 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 0899964689964679953518977
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.51 E-value=0.011 Score=30.46 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.50 E-value=0.014 Score=29.91 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599995899999996
Q 000556 180 MTLLLGPPASGKTTLLLALA 199 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLa 199 (1426)
+.+|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.50 E-value=0.013 Score=30.05 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.4
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 99994790899964689964679953518
Q 000556 861 SGAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 861 s~~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
.|-+++|+++.|.|++|+|||++..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.49 E-value=0.0091 Score=30.98 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.++.|+||+||||||+.+.|+.+
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 7828999899999879999999998
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.49 E-value=0.011 Score=30.56 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.017 Score=29.34 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
...+++||+|+||||.+-=||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.47 E-value=0.011 Score=30.40 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.|.++-+.|.|||||||+.+.|+.+
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9869999899999989999999988
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.44 E-value=0.011 Score=30.55 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.44 E-value=0.011 Score=30.51 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.43 E-value=0.015 Score=29.69 Aligned_cols=22 Identities=36% Similarity=0.385 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
+.+|.|++||||||..+.|...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.014 Score=29.86 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.012 Score=30.13 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.018 Score=29.15 Aligned_cols=23 Identities=39% Similarity=0.564 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
++++|.+|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCCC
T ss_conf 99999899299999999972867
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.012 Score=30.29 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++|+|++|+|||||++.+.+.
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998992989999999719
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.37 E-value=0.014 Score=29.78 Aligned_cols=27 Identities=33% Similarity=0.582 Sum_probs=23.5
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 999479089996468996467995351
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 862 ~~~~pG~~~al~G~sGaGKTTLl~~La 888 (1426)
|-+++|+++.|.|++|+|||||.--++
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 995588799998589898899999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.34 E-value=0.01 Score=30.62 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468996467995351897
Q 000556 870 TALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+.|+|++||||||+-+.||.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.33 E-value=0.012 Score=30.28 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.014 Score=29.90 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
..+.|+||.++||||||+.|.|...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9999889999979999999809987
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.31 E-value=0.012 Score=30.13 Aligned_cols=26 Identities=42% Similarity=0.492 Sum_probs=22.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47908999646899646799535189
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+.|.+++|-|+-||||||+.+.|+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.31 E-value=0.0091 Score=30.97 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+.+|-|+.||||||+++.|+.++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.26 E-value=0.0082 Score=31.25 Aligned_cols=21 Identities=43% Similarity=0.550 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999887338
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.25 E-value=0.036 Score=27.28 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.19 E-value=0.013 Score=30.07 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0899964689964679953518
Q 000556 868 VLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag 889 (1426)
-++||.|++||||||+.+.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.16 E-value=0.0031 Score=33.84 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.16 E-value=0.013 Score=29.97 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.|+|++||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.15 E-value=0.0085 Score=31.16 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994999999999709
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.10 E-value=0.015 Score=29.57 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 90899964689964679953518977
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=94.07 E-value=0.011 Score=30.52 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99985999958999999
Q 000556 181 TLLLGPPASGKTTLLLA 197 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~a 197 (1426)
++|.|+|||||||.|-.
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.04 E-value=0.01 Score=30.73 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599995899999996498
Q 000556 181 TLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l 202 (1426)
++++|+||+|||||++.+.+..
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999987899999984488
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.03 E-value=0.023 Score=28.54 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=22.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94884999985999958999999964989
Q 000556 175 IKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 175 i~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+||.++++-|+=|||||||.+.++..+.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 79982999966877658899999876422
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.02 E-value=0.017 Score=29.33 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
-++|+|.+|+|||||++.+.+.-
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.99 E-value=0.017 Score=29.32 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.014 Score=29.75 Aligned_cols=24 Identities=42% Similarity=0.469 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998599995899999996498
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
-+++|-|.-||||||||+-|....
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 889986488899999999998567
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.98 E-value=0.018 Score=29.19 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=31.2
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 1598474885799899-9898999999999977604985999994490048
Q 000556 339 VGPALALFMDEISTGL-DSSTTFQIVNCLKQHVHINSGTAVISLLQPAPET 388 (1426)
Q Consensus 339 v~~~~vLlLDEpTSGL-Ds~ta~~Iv~~Lr~~a~~~~~tvvisl~Qp~~ei 388 (1426)
+...+++++|++-.=. +......+...+.... ..++.+|++-..|..+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHC
T ss_conf 762130101126550586577889999999876-31663899548751001
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.96 E-value=0.014 Score=29.76 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
++.|.|++||||||+.+.|+.+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998989989899999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.017 Score=29.39 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.91 E-value=0.015 Score=29.65 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.++||+||||||..+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=93.91 E-value=0.012 Score=30.14 Aligned_cols=27 Identities=26% Similarity=0.420 Sum_probs=18.6
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 157413057894884999985999958999999
Q 000556 165 LTILKDVSGIIKPGRMTLLLGPPASGKTTLLLA 197 (1426)
Q Consensus 165 ~~IL~~vSg~i~pG~lt~IlGpsGSGKSTLL~a 197 (1426)
..|+++.. |. ++|.|+|||||||.|-.
T Consensus 17 ~~~v~~~~-----g~-~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 17 QEAVRTTE-----GP-LLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHCCS-----SC-EEEEECTTSCHHHHHHH
T ss_pred HHHHHCCC-----CC-EEEEECCCCCHHHHHHH
T ss_conf 99982999-----99-89995298668999999
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.016 Score=29.43 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
-++|+|.+|+|||||++.+.+.-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.89 E-value=0.016 Score=29.44 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=21.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 947908999646899646799535189
Q 000556 864 FRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 864 ~~pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.88 E-value=0.019 Score=29.01 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899964689964679953518977
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
.++++|++|+|||||++.+.+...
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~~ 41 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASEDI 41 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999964877
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.87 E-value=0.015 Score=29.65 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999859999589999999649
Q 000556 179 RMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
+.++|+|++|||||++++.|.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.86 E-value=0.016 Score=29.40 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.85 E-value=0.017 Score=29.39 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.|+||+||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.83 E-value=0.018 Score=29.09 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.022 Score=28.58 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=13.6
Q ss_pred CEEEEEECCCCCCHHHHHHH
Q ss_conf 84999985999958999999
Q 000556 178 GRMTLLLGPPASGKTTLLLA 197 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~a 197 (1426)
+.+++|-||||+||||++..
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~ 182 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAK 182 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHHH
T ss_conf 88599976898875216999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.019 Score=28.97 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|++|+|||||++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.021 Score=28.80 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.+|+|||||++.+.+.
T Consensus 6 ivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999993989999999829
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.77 E-value=0.059 Score=26.03 Aligned_cols=35 Identities=26% Similarity=0.216 Sum_probs=26.6
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 844019999479089996468996467995351897
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.|++. ...-.|.-+.++|+||+|||||...|..+-
T Consensus 4 ~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 4 SMHGV-LVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 28999-999999999998089999899999999859
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.019 Score=28.95 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++|+|.+|+|||||++.+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.71 E-value=0.018 Score=29.14 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-.+.|+|++||||||+-+.|+-+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~ 29 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKH 29 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 16999889999879999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.67 E-value=0.018 Score=29.09 Aligned_cols=27 Identities=30% Similarity=0.398 Sum_probs=24.2
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 999479089996468996467995351
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 862 ~~~~pG~~~al~G~sGaGKTTLl~~La 888 (1426)
|-+++|.++.|.|++|+|||++..-++
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 997689799998899887889999999
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.021 Score=28.80 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|++|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992999999999719
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.66 E-value=0.022 Score=28.68 Aligned_cols=22 Identities=32% Similarity=0.591 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.66 E-value=0.033 Score=27.51 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-+.|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.66 E-value=0.02 Score=28.94 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+..+.|.|++|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.64 E-value=0.039 Score=27.08 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-.+++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.63 E-value=0.038 Score=27.15 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-.+++|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.62 E-value=0.022 Score=28.64 Aligned_cols=72 Identities=17% Similarity=0.183 Sum_probs=37.6
Q ss_pred CCCEEEEECCCC--CCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 998578829999--999999999999999987389889999448877899630669899169399997699864137899
Q 000556 998 NPSIIFMDEPTS--GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLIS 1075 (1426)
Q Consensus 998 ~p~il~lDEPTs--gLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g~~~~~~~~ 1075 (1426)
.+.++++||.-. .-+......+++... .....++++...+....... +.+..+.+.+.|+.. ..+..
T Consensus 123 ~~~vi~ide~~~~~~~~~~~~~~~~~~~~---~~~~~ii~i~~~~~~~~~~~------l~~~~~~i~f~~~~~--~~i~~ 191 (253)
T d1sxja2 123 KHFVIIMDEVDGMSGGDRGGVGQLAQFCR---KTSTPLILICNERNLPKMRP------FDRVCLDIQFRRPDA--NSIKS 191 (253)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHH---HCSSCEEEEESCTTSSTTGG------GTTTSEEEECCCCCH--HHHHH
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHC---CCCCCCCCCCCCCCCCCCCC------CCCEEEEEECCCCCH--HHHHH
T ss_conf 51377763011111000134677765401---23422211135555211353------244036531145314--67889
Q ss_pred HHHHC
Q ss_conf 98719
Q 000556 1076 YFEAI 1080 (1426)
Q Consensus 1076 yF~~~ 1080 (1426)
+.+.+
T Consensus 192 ~l~~i 196 (253)
T d1sxja2 192 RLMTI 196 (253)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.023 Score=28.54 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.52 E-value=0.025 Score=28.29 Aligned_cols=27 Identities=41% Similarity=0.672 Sum_probs=15.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 948849999859999589999999649
Q 000556 175 IKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 175 i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
+-.|+-.+|.|++|+|||||+..|+..
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 457875568679998878999999997
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.49 E-value=0.013 Score=30.07 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=93.49 E-value=0.028 Score=27.98 Aligned_cols=23 Identities=52% Similarity=0.527 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 49999859999589999999649
Q 000556 179 RMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
|-.+|+|+.|||||||..+|...
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~~ 25 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLYK 25 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 09999948898099999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.48 E-value=0.017 Score=29.31 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.45 E-value=0.019 Score=29.02 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.44 E-value=0.029 Score=27.92 Aligned_cols=34 Identities=35% Similarity=0.683 Sum_probs=26.2
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 8440199994790899964689964679953518977
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
+|+.++. |=..++++|+.++|||||||.|+|...
T Consensus 24 ~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 24 ILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 9970799---879999889999979999999809987
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.43 E-value=0.025 Score=28.30 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.024 Score=28.42 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=18.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0899964689964679953518
Q 000556 868 VLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag 889 (1426)
-++||-|++|||||||-+.|.-
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8998379987889999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.025 Score=28.26 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-++++|.+|+|||||++.+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.27 E-value=0.027 Score=28.11 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.032 Score=27.61 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9994790899964689964679953518
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 862 ~~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
|-+++|.++-+.|++|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.20 E-value=0.028 Score=27.97 Aligned_cols=26 Identities=27% Similarity=0.277 Sum_probs=22.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 49999859999589999999649899
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
+..+|=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.18 E-value=0.034 Score=27.44 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHH---HCCCC
Q ss_conf 9999859999589999999---64989
Q 000556 180 MTLLLGPPASGKTTLLLAL---AGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aL---aG~l~ 203 (1426)
-.+|+|+.|||||||..+| +|..+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~ 34 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH 34 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCC
T ss_conf 999995898998999999999648534
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.17 E-value=0.029 Score=27.92 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599995899999996
Q 000556 180 MTLLLGPPASGKTTLLLALA 199 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLa 199 (1426)
-++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.16 E-value=0.025 Score=28.27 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.|+||.||||||+.+.|+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.023 Score=28.54 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++-+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.12 E-value=0.032 Score=27.65 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
=.+|+||||.|||++...|+.++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.06 E-value=0.024 Score=28.41 Aligned_cols=72 Identities=19% Similarity=0.248 Sum_probs=36.5
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99857882999999999999999999998738988999944887789963066989916939999769986413789998
Q 000556 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYF 1077 (1426)
Q Consensus 998 ~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g~~~~~~~~yF 1077 (1426)
++.++++||-- .+.......+...+..- .....++++.++++. +...+ ..+ -..+.+.|... ..+..+.
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~-~~~~~~i~~~n~~~~-i~~~l-----~sR-~~~i~~~~~~~--~~~~~~l 177 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMF-SSNVRFILSCNYSSK-IIEPI-----QSR-CAIFRFRPLRD--EDIAKRL 177 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHT-TTTEEEEEEESCGGG-SCHHH-----HHT-EEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEEHHHH-HCCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-CHHHH-----HCC-CCCCCCCCCCH--HHHHHHH
T ss_conf 72288614344-31214789876411247-764478861487665-65768-----473-12101233430--4677899
Q ss_pred HHC
Q ss_conf 719
Q 000556 1078 EAI 1080 (1426)
Q Consensus 1078 ~~~ 1080 (1426)
..+
T Consensus 178 ~~~ 180 (231)
T d1iqpa2 178 RYI 180 (231)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 888
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.029 Score=27.89 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.00 E-value=0.037 Score=27.24 Aligned_cols=28 Identities=43% Similarity=0.536 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4884999985999958999999964989
Q 000556 176 KPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
+|.-..+++||+|+|||.+.+.||..+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.99 E-value=0.025 Score=28.29 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-+.+.||+|+||||+.++|+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 4898799997388999999850
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.99 E-value=0.025 Score=28.25 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.++++|.+|+|||||++-+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.021 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.97 E-value=0.03 Score=27.77 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 908999646899646799535189
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
...++++||+|+||||.+-=||.+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999889999999999
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.92 E-value=0.03 Score=27.79 Aligned_cols=21 Identities=33% Similarity=0.642 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.032 Score=27.67 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.90 E-value=0.033 Score=27.54 Aligned_cols=19 Identities=47% Similarity=0.677 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599995899999996
Q 000556 181 TLLLGPPASGKTTLLLALA 199 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLa 199 (1426)
++++|.+|+|||||++-+.
T Consensus 5 ivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999899999899999884
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.89 E-value=0.044 Score=26.80 Aligned_cols=34 Identities=32% Similarity=0.219 Sum_probs=26.6
Q ss_pred EEEEEEEEEECCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 84401999947908999646899646799535189
Q 000556 856 LLNGLSGAFRPGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 856 iL~~vs~~~~pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-|+. +...-.|.-+.+.|+||+|||||.-.|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.88 E-value=0.031 Score=27.72 Aligned_cols=21 Identities=14% Similarity=0.354 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.88 E-value=0.032 Score=27.64 Aligned_cols=23 Identities=22% Similarity=0.582 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|...||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.87 E-value=0.032 Score=27.65 Aligned_cols=23 Identities=30% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.++++|...||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.84 E-value=0.037 Score=27.25 Aligned_cols=22 Identities=36% Similarity=0.240 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-.+++|+++||||||+++|.+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999947898499999999998
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.81 E-value=0.033 Score=27.55 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=23.5
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 94790899964689964679953518
Q 000556 864 FRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 864 ~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
.+||.+++|-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.74 E-value=0.034 Score=27.50 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 790899964689964679953518977
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
.|.++++-|+-||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.74 E-value=0.028 Score=27.98 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=20.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 908999646899646799535189
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
...++++||+|+||||.+-=||.+
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~ 35 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYF 35 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 989999899999989999999999
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.73 E-value=0.034 Score=27.50 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.|..+++-|+-||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.027 Score=28.12 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.036 Score=27.33 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.68 E-value=0.034 Score=27.46 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.67 E-value=0.032 Score=27.61 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+||+|.+.+|||||+++|+|-.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.67 E-value=0.029 Score=27.89 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.028 Score=28.03 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.51 E-value=0.026 Score=28.22 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.46 E-value=0.038 Score=27.19 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7908999646899646799535189
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
|...+.++||+|.|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.028 Score=28.02 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-+++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.04 Score=27.04 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.42 E-value=0.055 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
+.+|.|+.||||||..+.|+.+
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799998899999999986
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.41 E-value=0.035 Score=27.40 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.36 E-value=0.034 Score=27.50 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-+.|.||+|+|||++.++||..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 7998896999889999998620
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.053 Score=26.28 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
...++-||||+||||+.++++..+.
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 0598888998758999999999846
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.34 E-value=0.047 Score=26.59 Aligned_cols=22 Identities=32% Similarity=0.259 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
-.+++|++.+|||||+++|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.27 E-value=0.056 Score=26.12 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-.++.||+|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.26 E-value=0.059 Score=26.00 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88499998599995899999996498
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
+..+++|.|..|.|||||.+.+....
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 84089997799788899999999855
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.047 Score=26.61 Aligned_cols=23 Identities=35% Similarity=0.677 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.22 E-value=0.04 Score=27.04 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
..++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.036 Score=27.32 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.039 Score=27.13 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.14 E-value=0.046 Score=26.65 Aligned_cols=21 Identities=33% Similarity=0.539 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.12 E-value=0.031 Score=27.76 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468996467995351897
Q 000556 870 TALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+.+.||+|.||||+.+++++..
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8988979987888999999984
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.044 Score=26.76 Aligned_cols=21 Identities=33% Similarity=0.607 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.09 E-value=0.04 Score=27.03 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|+.|+|||||++-+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.035 Score=27.43 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.91 E-value=0.035 Score=27.40 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.038 Score=27.18 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=91.86 E-value=0.075 Score=25.37 Aligned_cols=27 Identities=37% Similarity=0.430 Sum_probs=22.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+--.+|+|-|-+|||||+|+|.|+-.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.76 E-value=0.053 Score=26.28 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9089996468996467995351897
Q 000556 867 GVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 867 G~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
...+.|.||+|.||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.76 E-value=0.044 Score=26.81 Aligned_cols=22 Identities=23% Similarity=0.477 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.059 Score=26.03 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.73 E-value=0.033 Score=27.55 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.68 E-value=0.051 Score=26.42 Aligned_cols=23 Identities=57% Similarity=0.778 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++|-|.-||||||+++.|+.+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.66 E-value=0.051 Score=26.41 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.64 E-value=0.047 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+.++|++|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.61 E-value=0.047 Score=26.63 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.61 E-value=0.047 Score=26.62 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646899646799535189
Q 000556 870 TALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 870 ~al~G~sGaGKTTLl~~Lag~ 890 (1426)
..+.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.54 E-value=0.069 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999589999999649899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
...|=|+-||||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.051 Score=26.39 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 994790899964689964679953518
Q 000556 863 AFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 863 ~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.42 E-value=0.059 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=91.41 E-value=0.064 Score=25.77 Aligned_cols=24 Identities=50% Similarity=0.711 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
-.+.+||+|+|||-|.++||..++
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 324418998637899999986443
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.32 E-value=0.056 Score=26.16 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=42.2
Q ss_pred HHHHCCCEEEEECCCCCCCHHHH------HHHHHHHHHH----HH-CCCEEEEEECCCCHHHHHHCCEEEEEEC--CCEE
Q ss_conf 99629985788299999999999------9999999998----73-8988999944887789963066989916--9399
Q 000556 994 ELVANPSIIFMDEPTSGLDARAA------AIVMRTVRNT----VD-TGRTVVCTIHQPGIDIFDAFDELFLMKR--GGQE 1060 (1426)
Q Consensus 994 ~L~~~p~il~lDEPTsgLD~~sa------~~i~~~l~~~----~~-~g~Tvi~t~Hqps~~i~~~fD~l~ll~~--gG~~ 1060 (1426)
+-...|.|||+||-=+=...++. ..+...+... .. .+.-||+|+.+|.. .|.-+ +.. =.+.
T Consensus 93 A~~~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~-----ld~al-~r~gRfd~~ 166 (258)
T d1e32a2 93 AEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS-----IDPAL-RRFGRFDRE 166 (258)
T ss_dssp HHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGG-----SCGGG-TSTTSSCEE
T ss_pred HHHCCCEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCC-----CCHHH-HHCCCCCCE
T ss_conf 986499499852111322578877770689998775001101234688117975799310-----25245-424630232
Q ss_pred EEECCCCCCHHHHHHHHHHC
Q ss_conf 99769986413789998719
Q 000556 1061 IYVGPLGRHSCQLISYFEAI 1080 (1426)
Q Consensus 1061 vy~Gp~g~~~~~~~~yF~~~ 1080 (1426)
++++++... .-...++..
T Consensus 167 i~~~~P~~~--~R~~il~~~ 184 (258)
T d1e32a2 167 VDIGIPDAT--GRLEILQIH 184 (258)
T ss_dssp EECCCCCHH--HHHHHHHHT
T ss_pred EECCCCCHH--HHHHHHHHH
T ss_conf 378999988--999873220
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.31 E-value=0.055 Score=26.17 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.059 Score=26.01 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
+++++|.+|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.17 E-value=0.058 Score=26.07 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.063 Score=25.84 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.08 E-value=0.057 Score=26.11 Aligned_cols=20 Identities=50% Similarity=0.717 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89996468996467995351
Q 000556 869 LTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~La 888 (1426)
-+||+|..|+|||||.+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.081 Score=25.15 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999958999999964989
Q 000556 181 TLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.+++||||.|||++...||.++.
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.90 E-value=0.063 Score=25.82 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.061 Score=25.91 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.89 E-value=0.071 Score=25.50 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.3
Q ss_pred CEEEEECCCCCCHHHHHHHHC
Q ss_conf 089996468996467995351
Q 000556 868 VLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~La 888 (1426)
-++.++|.+|+|||||++-+.
T Consensus 7 ~KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
T ss_conf 779999899998899999895
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.86 E-value=0.077 Score=25.30 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
.+++|++.+|||||+..|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.84 E-value=0.052 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-.+||+|-+.+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=90.82 E-value=0.097 Score=24.68 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 479089996468996467995351897
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+|.--+|++|.-.+|||||++.|.|..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.71 E-value=0.076 Score=25.34 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=18.4
Q ss_pred CEEEEECCCCCCHHHHHHHHC
Q ss_conf 089996468996467995351
Q 000556 868 VLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~La 888 (1426)
-++.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.68 E-value=0.076 Score=25.31 Aligned_cols=22 Identities=18% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.68 E-value=0.074 Score=25.41 Aligned_cols=21 Identities=38% Similarity=0.760 Sum_probs=18.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 998599995899999996498
Q 000556 182 LLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 182 ~IlGpsGSGKSTLL~aLaG~l 202 (1426)
+|+|+||.|||++...|+.++
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 687999988999999999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.66 E-value=0.073 Score=25.43 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
++.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.60 E-value=0.07 Score=25.56 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++|+|.+|+|||||++-+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.57 E-value=0.068 Score=25.64 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=41.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99857882999999999999999999998738988999944887789963066989916939999769986413789998
Q 000556 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYF 1077 (1426)
Q Consensus 998 ~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g~~~~~~~~yF 1077 (1426)
+.+++++||.-. +...+...+...+... ...+..+++.++.+. +... +.++ -+.+.+.|+.. .++..|.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~~-i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY-SNSTRFAFACNQSNK-IIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT-TTTEEEEEEESCGGG-SCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCC-CCCEEEEECCCCHHH-HHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-3215778775201123-333366531474302-1067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 719
Q 000556 1078 EAI 1080 (1426)
Q Consensus 1078 ~~~ 1080 (1426)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.081 Score=25.17 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
+++++|.+|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.46 E-value=0.069 Score=25.57 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 89996468996467995351
Q 000556 869 LTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~La 888 (1426)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.42 E-value=0.13 Score=23.84 Aligned_cols=23 Identities=39% Similarity=0.484 Sum_probs=11.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 79089996468996467995351
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~La 888 (1426)
.|+..+|.|++|.|||+|+.-++
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
T ss_conf 78877766799989899999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.084 Score=25.05 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.26 E-value=0.087 Score=24.96 Aligned_cols=21 Identities=38% Similarity=0.475 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|.+|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.20 E-value=0.068 Score=25.61 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.15 E-value=0.091 Score=24.86 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++.++|.+|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.04 E-value=0.072 Score=25.48 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=19.7
Q ss_pred CEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 08999646899646799535189
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.94 E-value=0.085 Score=25.03 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=20.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 790899964689964679953518
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
|---+|++|..++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.90 E-value=0.091 Score=24.85 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999958999999964989
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
...|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.75 E-value=0.057 Score=26.07 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
.+.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.66 E-value=0.098 Score=24.64 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
+++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.63 E-value=0.098 Score=24.65 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=24.0
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 9994790899964689964679953518
Q 000556 862 GAFRPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 862 ~~~~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
|-++.|.++.+.|++|+|||||+-.++.
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9866633699964887488999999999
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.62 E-value=0.089 Score=24.90 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=43.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99857882999999999999999999998738988999944887789963066989916939999769986413789998
Q 000556 998 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYF 1077 (1426)
Q Consensus 998 ~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g~~~~~~~~yF 1077 (1426)
+.+++++||.-. |...+...+.+.+... .....+|++.+.+....-..-+ + =+.+.+-|+.. .++.++.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~-~~~~~~Il~tn~~~~i~~~l~s------R-~~~i~~~~~~~--~~~~~~l 199 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKY-SKNIRLIMVCDSMSPIIAPIKS------Q-CLLIRCPAPSD--SEISTIL 199 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHS-TTTEEEEEEESCSCSSCHHHHT------T-SEEEECCCCCH--HHHHHHH
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCC-CCCCCCEEEECCCCCHHHHHHC------C-HHEEEECCCCH--HHHHHHH
T ss_conf 724999424333-4543111221002213-5664300010211100254421------0-00243035330--4689999
Q ss_pred HHC
Q ss_conf 719
Q 000556 1078 EAI 1080 (1426)
Q Consensus 1078 ~~~ 1080 (1426)
+.+
T Consensus 200 ~~i 202 (252)
T d1sxje2 200 SDV 202 (252)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.48 E-value=0.094 Score=24.77 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=40.3
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEE-EEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 98578829999999999999999999987389889-99944887789963066989916939999769986413789998
Q 000556 999 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV-VCTIHQPGIDIFDAFDELFLMKRGGQEIYVGPLGRHSCQLISYF 1077 (1426)
Q Consensus 999 p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tv-i~t~Hqps~~i~~~fD~l~ll~~gG~~vy~Gp~g~~~~~~~~yF 1077 (1426)
.+++++||.- .+.......+.+.+.... ..++ +++.++++ .+... +..+ ...+.+-|+.. .++..+.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~--~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCC--CCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 1899996632-000237899998863112--0023201267087-75999-----9988-75401235652--0001102
Q ss_pred HHC
Q ss_conf 719
Q 000556 1078 EAI 1080 (1426)
Q Consensus 1078 ~~~ 1080 (1426)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.39 E-value=0.1 Score=24.51 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
.+.|-|.-|||||||++-|....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEECCCCCHHHHHHHHHHCC
T ss_conf 89986488899999999998567
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.16 E-value=0.11 Score=24.42 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
++.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.09 E-value=0.12 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8999646899646799535189
Q 000556 869 LTALMGVSGAGKTTLMDVLSGR 890 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~ 890 (1426)
+++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.93 E-value=0.097 Score=24.67 Aligned_cols=24 Identities=25% Similarity=0.502 Sum_probs=21.0
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-.++|+|-+.+|||||+++|++-.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.87 E-value=0.11 Score=24.45 Aligned_cols=49 Identities=4% Similarity=0.040 Sum_probs=32.8
Q ss_pred HHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
Q ss_conf 629985788299999-9999999999999998738988999944887789
Q 000556 996 VANPSIIFMDEPTSG-LDARAAAIVMRTVRNTVDTGRTVVCTIHQPGIDI 1044 (1426)
Q Consensus 996 ~~~p~il~lDEPTsg-LD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqps~~i 1044 (1426)
..+..+|++|+--.= -+......+..++......|+.+|+|...|..++
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC
T ss_conf 76213010112655058657788999999987631663899548751001
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.58 E-value=0.13 Score=23.91 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599995899999996
Q 000556 181 TLLLGPPASGKTTLLLALA 199 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLa 199 (1426)
.+|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=88.48 E-value=0.11 Score=24.40 Aligned_cols=25 Identities=24% Similarity=0.131 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999589999999649899
Q 000556 180 MTLLLGPPASGKTTLLLALAGKLDS 204 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l~~ 204 (1426)
...|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=88.19 E-value=0.13 Score=23.99 Aligned_cols=27 Identities=26% Similarity=0.117 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 790899964689964679953518977
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
.+..+.+.||+|+|||++..+|++...
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 767699989999888999999999859
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=88.10 E-value=0.2 Score=22.79 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 499998599995899999996498
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
....+.||+++|||+++++|...+
T Consensus 105 n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 105 NTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998589887789999999983
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=88.02 E-value=0.18 Score=23.00 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 790899964689964679953518977
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
.+-.++++|.+.+|||||+|.|.|++.
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.92 E-value=0.17 Score=23.11 Aligned_cols=21 Identities=38% Similarity=0.479 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999589999999649
Q 000556 181 TLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG~ 201 (1426)
++++|..|+|||||++-+...
T Consensus 5 ivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998889999988408
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.78 E-value=0.15 Score=23.50 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=20.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 79089996468996467995351897
Q 000556 866 PGVLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
|.-...++||+|+|||.|.+.||...
T Consensus 52 p~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 52 PIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76699997888624899999999983
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=87.69 E-value=0.11 Score=24.24 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599995899999996
Q 000556 181 TLLLGPPASGKTTLLLALA 199 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLa 199 (1426)
.+++|+.++|||||+..|.
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.65 E-value=0.21 Score=22.67 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.3
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78948849999859999589999999649
Q 000556 173 GIIKPGRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
..+-.|+-.+|.|++|+|||+|+.-++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=87.55 E-value=0.083 Score=25.09 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=19.1
Q ss_pred EECCEEEEEECCCCCCHHH-HHHHH
Q ss_conf 9488499998599995899-99999
Q 000556 175 IKPGRMTLLLGPPASGKTT-LLLAL 198 (1426)
Q Consensus 175 i~pG~lt~IlGpsGSGKST-LL~aL 198 (1426)
+++|+.++|.+|+|||||+ .|-.+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~ 30 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAI 30 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHH
T ss_conf 6469949999799997879999999
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.13 E-value=0.21 Score=22.67 Aligned_cols=22 Identities=32% Similarity=0.277 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
=.+++|+.++|||||...|+-.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll~~ 29 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLIYK 29 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999947899899999999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.08 E-value=0.18 Score=22.98 Aligned_cols=22 Identities=36% Similarity=0.442 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHCC
Q ss_conf 0899964689964679953518
Q 000556 868 VLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag 889 (1426)
.++||.|.-||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.06 E-value=0.23 Score=22.38 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999958999999964
Q 000556 181 TLLLGPPASGKTTLLLALAG 200 (1426)
Q Consensus 181 t~IlGpsGSGKSTLL~aLaG 200 (1426)
.+++|+.++|||||+..|..
T Consensus 6 i~viGHVd~GKTTL~~~Ll~ 25 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLLM 25 (224)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994479999999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.99 E-value=0.18 Score=23.09 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 089996468996467995351897
Q 000556 868 VLTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 868 ~~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
..+++=|.-||||||+++.|+-..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=86.49 E-value=0.18 Score=23.04 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=16.3
Q ss_pred CCEEEEEECCCCCCHHHHH
Q ss_conf 8849999859999589999
Q 000556 177 PGRMTLLLGPPASGKTTLL 195 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL 195 (1426)
.|...+..|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.48 E-value=0.18 Score=23.11 Aligned_cols=31 Identities=35% Similarity=0.427 Sum_probs=24.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7894884999985999958999999964989
Q 000556 173 GIIKPGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 173 g~i~pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
|.-.|.-..++.||||+|||.|.++||+++.
T Consensus 118 ~~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 118 GHRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp TEEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1436886388877998508899999999863
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.43 E-value=0.22 Score=22.49 Aligned_cols=21 Identities=24% Similarity=0.401 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
++.++|.+|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.31 E-value=0.2 Score=22.79 Aligned_cols=23 Identities=30% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 89996468996467995351897
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRK 891 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~ 891 (1426)
-..++||+|+|||-|.+.||...
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 32441899863789999998644
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.18 E-value=0.22 Score=22.53 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 899964689964679953518
Q 000556 869 LTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag 889 (1426)
++.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=85.89 E-value=0.22 Score=22.55 Aligned_cols=20 Identities=35% Similarity=0.639 Sum_probs=17.1
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48849999859999589999
Q 000556 176 KPGRMTLLLGPPASGKTTLL 195 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL 195 (1426)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=85.42 E-value=0.23 Score=22.33 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHCC
Q ss_conf 4790899964689964679953518
Q 000556 865 RPGVLTALMGVSGAGKTTLMDVLSG 889 (1426)
Q Consensus 865 ~pG~~~al~G~sGaGKTTLl~~Lag 889 (1426)
+|.--+|++|.-.+|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=85.33 E-value=0.37 Score=21.11 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=15.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 849999859999589999999649
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
|.+.+++||=.|||||-|--...+
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~ 25 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHR 25 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 379999915067899999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=85.04 E-value=0.15 Score=23.47 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 899964689964679953518977
Q 000556 869 LTALMGVSGAGKTTLMDVLSGRKT 892 (1426)
Q Consensus 869 ~~al~G~sGaGKTTLl~~Lag~~~ 892 (1426)
-+.|.|+.|.|||||.+.+++..+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.97 E-value=0.21 Score=22.67 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=15.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHC
Q ss_conf 99479089996468996467995351
Q 000556 863 AFRPGVLTALMGVSGAGKTTLMDVLS 888 (1426)
Q Consensus 863 ~~~pG~~~al~G~sGaGKTTLl~~La 888 (1426)
.+-.|+..+|.|++|.|||+|+.-++
T Consensus 64 pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 64 PIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp CCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 76678778765688888589999999
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.51 E-value=0.36 Score=21.16 Aligned_cols=27 Identities=33% Similarity=0.614 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 884999985999958999999964989
Q 000556 177 PGRMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 177 pG~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
.|.+.+++||=.|||||-|--.+.+..
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.27 E-value=0.2 Score=22.73 Aligned_cols=64 Identities=16% Similarity=0.334 Sum_probs=39.4
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 21112236999888899899989999999629985788299999999999999999999873898899994488
Q 000556 967 PLIQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1040 (1426)
Q Consensus 967 ~~~~~~vG~~~~~glSgGqrkRlsIa~~L~~~p~il~lDEPTsgLD~~sa~~i~~~l~~~~~~g~Tvi~t~Hqp 1040 (1426)
.+.=.++..||.-.++++-..=+. +.+-.+|+. .+..|+-+.+...+..+.+ .+..+++.+-..
T Consensus 95 ~~~inliDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viNKi 158 (341)
T d1n0ua2 95 SFLINLIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVINKV 158 (341)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEECH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEECC
T ss_conf 537999737873889999998875-----237249998-6566820469999999987----699869998772
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| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.47 E-value=0.33 Score=21.46 Aligned_cols=20 Identities=45% Similarity=0.710 Sum_probs=17.2
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 48849999859999589999
Q 000556 176 KPGRMTLLLGPPASGKTTLL 195 (1426)
Q Consensus 176 ~pG~lt~IlGpsGSGKSTLL 195 (1426)
+.|..++..|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=83.36 E-value=0.4 Score=20.91 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999589999999649
Q 000556 180 MTLLLGPPASGKTTLLLALAGK 201 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~ 201 (1426)
|++|+|++.||||.+...|++.
T Consensus 1 iiLVtGGarSGKS~~AE~l~~~ 22 (180)
T d1c9ka_ 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCCHHHHHHHHHHC
T ss_conf 9899789876599999999845
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=82.85 E-value=0.26 Score=22.07 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4999985999958999999964989
Q 000556 179 RMTLLLGPPASGKTTLLLALAGKLD 203 (1426)
Q Consensus 179 ~lt~IlGpsGSGKSTLL~aLaG~l~ 203 (1426)
...++.|||++|||++..+|...+.
T Consensus 54 n~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 54 NCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1899988998568999999999828
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=82.24 E-value=0.47 Score=20.49 Aligned_cols=23 Identities=17% Similarity=0.186 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599995899999996498
Q 000556 180 MTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 180 lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
=++|.|++|+||+++.++|....
T Consensus 25 pvlI~Ge~GtGK~~~A~~ih~~s 47 (247)
T d1ny5a2 25 PVLITGESGVGKEVVARLIHKLS 47 (247)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 78998999817999999999965
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=82.05 E-value=0.25 Score=22.15 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=9.8
Q ss_pred CCCEEEEECCCCCCHHHHHH
Q ss_conf 79089996468996467995
Q 000556 866 PGVLTALMGVSGAGKTTLMD 885 (1426)
Q Consensus 866 pG~~~al~G~sGaGKTTLl~ 885 (1426)
.|+..+|.|++|+|||+|+.
T Consensus 66 ~GQr~~Ifg~~g~GKt~l~~ 85 (276)
T d1fx0a3 66 RGQRELIIGDRQTGKTAVAT 85 (276)
T ss_dssp TTCBCBEEESSSSSHHHHHH
T ss_pred CCCEEEECCCCCCCHHHHHH
T ss_conf 77667600677888579999
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=81.88 E-value=0.2 Score=22.75 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=17.3
Q ss_pred EECCEEEEEECCCCCCHHHHH-HHHHC
Q ss_conf 948849999859999589999-99964
Q 000556 175 IKPGRMTLLLGPPASGKTTLL-LALAG 200 (1426)
Q Consensus 175 i~pG~lt~IlGpsGSGKSTLL-~aLaG 200 (1426)
++.|+-+.|.+|+|||||... .++..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~ 30 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILA 30 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHH
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 875996799817998855999999999
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.85 E-value=0.68 Score=19.50 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=20.6
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8499998599995899999996498
Q 000556 178 GRMTLLLGPPASGKTTLLLALAGKL 202 (1426)
Q Consensus 178 G~lt~IlGpsGSGKSTLL~aLaG~l 202 (1426)
+.-.++-||||+||||+...++...
T Consensus 15 ~~~~l~~G~~g~gk~~~a~~l~~~i 39 (198)
T d2gnoa2 15 GISILINGEDLSYPREVSLELPEYV 39 (198)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8559988989988899999999998
|