Citrus Sinensis ID: 000562
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1419 | 2.2.26 [Sep-21-2011] | |||||||
| O81016 | 1420 | ABC transporter G family | yes | no | 1.0 | 0.999 | 0.790 | 0.0 | |
| Q8GU87 | 1426 | Pleiotropic drug resistan | yes | no | 0.997 | 0.992 | 0.727 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.996 | 0.975 | 0.610 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | yes | no | 0.994 | 0.968 | 0.605 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.994 | 0.968 | 0.604 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.988 | 0.978 | 0.601 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | no | no | 0.988 | 0.971 | 0.608 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.984 | 0.981 | 0.589 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.996 | 0.965 | 0.602 | 0.0 | |
| Q7PC80 | 1468 | Probable pleiotropic drug | no | no | 0.985 | 0.952 | 0.590 | 0.0 |
| >sp|O81016|AB32G_ARATH ABC transporter G family member 32 OS=Arabidopsis thaliana GN=ABCG32 PE=1 SV=1 | Back alignment and function desciption |
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Score = 2366 bits (6132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1123/1420 (79%), Positives = 1281/1420 (90%), Gaps = 1/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG +LQ SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PAAWML+VT+ EE RLGVDFAEIYR SNL QRN+EL+E LSKPS +K++ F T+YSQS
Sbjct: 1081 PAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
+QF+ACL KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR+ QQ LFNAMGS
Sbjct: 1141 LYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY AVLFIGITNA+A QPVVS+ER+VSYRERAAGMYSALPFAFAQV IEFPYV Q+ IY
Sbjct: 1201 MYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
+IFY+MA+FEW+AVKF+ Y+FFMYF+++YFTFYGMMTTAITPNHNVA+IIAAP YMLWN
Sbjct: 1261 STIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI +KRIP++WRWYYWANP+AW+LYGL SQ+GDD++ VKLSDG V VK LL+
Sbjct: 1321 LFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLE 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
DV G++HDFL ++ MVVAF F+++FA+AIKAF FQ+R
Sbjct: 1381 DVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
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May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU87|PDR6_ORYSJ Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 2114 bits (5477), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1040/1429 (72%), Positives = 1205/1429 (84%), Gaps = 13/1429 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKN-------VVGD--V 51
MW +AE F+R+ S+R+E +++EALRWAAL+RLPT ARARRG+ ++ V GD +
Sbjct: 1 MW-AAEAAFARSGSWREEEDEQEALRWAALQRLPTVARARRGLLRSPAPGEDRVQGDDAL 59
Query: 52 KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVES 111
EVDV+ L+ ++ ++DRL+ A D E FF R+R R +AV +E PKIEVR+++LTV++
Sbjct: 60 CEVDVAGLSPGDRTALVDRLL-ADSGDVEDFFRRIRSRFDAVQIEFPKIEVRYEDLTVDA 118
Query: 112 FVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171
+VH+GSRALPTIPNFI NMTEA LR LRIYRG R KL ILD++SGIIRPSR+TLLLGPPS
Sbjct: 119 YVHVGSRALPTIPNFICNMTEAFLRHLRIYRGGRVKLPILDNVSGIIRPSRMTLLLGPPS 178
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231
SGKTTLLLALAGRLG L+VSG ITYNGH EFVP RTSAYVSQQDW +EMTVRETL+
Sbjct: 179 SGKTTLLLALAGRLGPGLKVSGNITYNGHHLNEFVPQRTSAYVSQQDWHASEMTVRETLE 238
Query: 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
FAG+CQGVG KYDM+ EL RREK GIKPDEDLD+FMK+ AL G++TSLV EYIMK+ GL
Sbjct: 239 FAGRCQGVGIKYDMLVELLRREKNEGIKPDEDLDVFMKALALEGKQTSLVAEYIMKVYGL 298
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
D CADT+VGDEM+KGISGGQKKRLTTGELLVG ARVLFMDEIS GLDS+TTYQIIKYL+H
Sbjct: 299 DICADTIVGDEMIKGISGGQKKRLTTGELLVGSARVLFMDEISTGLDSATTYQIIKYLRH 358
Query: 352 STRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKN 411
ST ALDGTT+ISLLQPAPE YELFDDVIL+SEGQIVYQGPR +DFFA MGF CP+RKN
Sbjct: 359 STHALDGTTIISLLQPAPETYELFDDVILISEGQIVYQGPREYAVDFFAGMGFRCPERKN 418
Query: 412 VADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNH 471
VADFLQEV SKKDQ+QYW + PY+Y+S KFAEAF ++ GK L +ELAVP++R NH
Sbjct: 419 VADFLQEVLSKKDQQQYWCHYDYPYQYVSVSKFAEAFKTFVIGKRLHDELAVPYNRHRNH 478
Query: 472 PAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531
PAALSTS YG +R ELLK++F WQ LLMKRNSFIYVFKFIQLL+VALITMTVFFR+TMH
Sbjct: 479 PAALSTSNYGVRRLELLKSNFQWQHLLMKRNSFIYVFKFIQLLLVALITMTVFFRSTMHR 538
Query: 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS 591
++DDG +YLGALYF++V+ILFNGFTEVS+LV KLP+LYKHRDLHFYP W YT+PSW LS
Sbjct: 539 DSVDDGIIYLGALYFAIVMILFNGFTEVSLLVTKLPILYKHRDLHFYPPWAYTLPSWLLS 598
Query: 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN 651
IPTSLIESG WV VTYYV+GYDP R Q LL FFLHQ S+ LFRV+ SLGRNMIVAN
Sbjct: 599 IPTSLIESGMWVLVTYYVVGYDPQFTRCLGQFLLLFFLHQTSLALFRVMASLGRNMIVAN 658
Query: 652 TFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNS 711
TFGSFA+LVVM LGGFII+++SIP WWIWG+W+SP+MYAQNA SVNEFLGHSW ++ N
Sbjct: 659 TFGSFALLVVMILGGFIITKESIPAWWIWGYWISPMMYAQNAISVNEFLGHSWSQQFANQ 718
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LGEAIL LF E YW+WIGVGA+ GY ++ N LFT FL+ LNP+G QAVVSK +
Sbjct: 719 NITLGEAILTGYGLFKEKYWFWIGVGALFGYAIVLNFLFTLFLTLLNPIGNIQAVVSKDD 778
Query: 772 LQERDRRRKGENVVIELREYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPV 830
+Q R RRK + +ELR YL S+SLNG K QKGMVLPFQPLSM F NINY+VDVP
Sbjct: 779 IQHRAPRRKNGKLALELRSYLH-SASLNGHNLKDQKGMVLPFQPLSMCFKNINYYVDVPA 837
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI 890
ELK +G++EDRLQLL++VTGAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG+IEG I I
Sbjct: 838 ELKSQGIVEDRLQLLIDVTGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGLIEGSITI 897
Query: 891 SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
SGYPK QETF RISGYCEQND+HSP LTV+ESLL+SA LRLPS +++ T+R FVEEVMEL
Sbjct: 898 SGYPKNQETFTRISGYCEQNDVHSPCLTVIESLLYSACLRLPSHVDVNTRRVFVEEVMEL 957
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
VEL +LSGAL+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRT
Sbjct: 958 VELNALSGALVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRT 1017
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEG 1070
VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG+LIYAGPLGSKS L+++FEA+ G
Sbjct: 1018 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGQLIYAGPLGSKSRNLVEFFEAIPG 1077
Query: 1071 VPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKL 1130
VPKIR GYNPAAWMLEVTS E LGVDFAE YR+S LFQ+ +E+V+ LS+P SK+L
Sbjct: 1078 VPKIRDGYNPAAWMLEVTSTQMEQILGVDFAEYYRQSKLFQQTQEMVDILSRPRRESKEL 1137
Query: 1131 NFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQ 1190
F+TKYSQ F Q+ ACL KQNLSYWRNPQYTAVRFFYTV+ISLM G+ICWKFG++RE Q
Sbjct: 1138 TFATKYSQPFFAQYAACLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWKFGSRRETQ 1197
Query: 1191 QDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFP 1250
D+FNAMG+MY AVLFIGITNA++VQPV+S+ER+VSYRERAAGMYSALPFAF+ V +EFP
Sbjct: 1198 HDIFNAMGAMYAAVLFIGITNATSVQPVISIERFVSYRERAAGMYSALPFAFSLVTVEFP 1257
Query: 1251 YVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAII 1310
Y+ Q+LIY +IFYS+ SFEWTAVKF+ Y+FFMYFT+LYFTFYGMMTTAITPNH VA II
Sbjct: 1258 YILVQSLIYGTIFYSLGSFEWTAVKFLWYLFFMYFTLLYFTFYGMMTTAITPNHTVAPII 1317
Query: 1311 AAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTG 1370
AAP Y LWNLF GFMI KRIP +WRWYYWANP++W+LYGL TSQFGD D+ + L+DG
Sbjct: 1318 AAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGIT 1377
Query: 1371 SVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+ L+D FGFRHDFL + MV F +FA++FA AIK FQ+R
Sbjct: 1378 TTTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1426
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1837 bits (4759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/1439 (61%), Positives = 1096/1439 (76%), Gaps = 25/1439 (1%)
Query: 1 MWNSAENVFSRTSS-FRDEVEDEEALRWAALERLPTYARARRGIFK------NVVGDVKE 53
MW S +VFSR+SS F+DE +DEEALRWAALERLPTY R RRGI G+ E
Sbjct: 17 MWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDGGAGGEKVE 76
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E R +++RLV A +DD ERF ++R+R + V ++ P IEVRF+NL VE+ V
Sbjct: 77 VDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFENLEVEADV 136
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
H+G+R LPT+ N + N EA+ L I + +T+L D+SGII+P R+TLLLGPP SG
Sbjct: 137 HVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSG 196
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAG+L L+VSGK+TYNGHG EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 197 KTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMTVRETLAFS 256
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVG++Y+M+TELARREK A IKPD D+DI+MK+ A+GGQ++S+V +YI+KILGLD
Sbjct: 257 ARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDI 316
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VG+EML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTTYQI+ L+ +
Sbjct: 317 CADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTI 376
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQ+VYQGPR VL+FF MGF CP RK VA
Sbjct: 377 HILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVA 436
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTS+KDQ QYW PYR++ +FA+AF S+H G+++ EL+ PFDR +HPA
Sbjct: 437 DFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPA 496
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+TSKYG R ELLK + + +LLLMKRN+F+Y+FK + L ++ALI MT FFRT+M H
Sbjct: 497 ALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDR 556
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
D G +YLGALYF++ ++FNGF E++M V KLPV +K RDL F+P+W YTIPSW L IP
Sbjct: 557 -DYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIP 615
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ +E G +V +TYYVIG+DP+V RF +Q LL L+QMS LFR I +GR+M+V++TF
Sbjct: 616 ITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTF 675
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNF 713
G ++L ALGGFI++R + KWWIWG+W+SPL YAQNA S NEFLGHSW + N
Sbjct: 676 GPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENV 735
Query: 714 SLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQ 773
+LG ++L+ R +F E+ WYWIG+GA+LGYTLLFN L+T LS L+P A +S+ L+
Sbjct: 736 TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALK 795
Query: 774 ERDRRRKGENVV-----------IELREYLQRSSSLNG--KYFKQKGMVLPFQPLSMAFG 820
E+ GE V +EL ++S +N +KGMVLPF PLS++F
Sbjct: 796 EKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFN 855
Query: 821 NINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880
++ Y VD+P +K +G+ EDRL LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKT
Sbjct: 856 DVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKT 915
Query: 881 GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940
GG IEGDI ISGYPK+QETFARISGYCEQNDIHSP +TV ESL+FSAWLRLPSE++ E +
Sbjct: 916 GGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEAR 975
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ F+EEVM+LVELTSL GAL+GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD
Sbjct: 976 KMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1035
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCE 1060
ARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GP+G S +
Sbjct: 1036 ARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQNSSK 1095
Query: 1061 LIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESL 1120
LI+YFE ++GV +I+ GYNPA WMLEVTS +E LGVDF+EIYR+S L+QRN+EL+E L
Sbjct: 1096 LIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKELIEEL 1155
Query: 1121 SKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSIC 1180
S P P S LNF T+YS+SF Q LACL KQN SYWRNP YTAVR +T+VI+LM G++
Sbjct: 1156 STPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIALMFGTMF 1215
Query: 1181 WKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPF 1240
W G + + QQDLFNAMGSMY AVL+IG+ N+ +VQPVV VER V YRERAAGMYSA P+
Sbjct: 1216 WNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERAAGMYSAFPY 1275
Query: 1241 AFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAI 1300
AF QV IE PY+ Q LIY + YSM FEWT KF+ Y+FFMYFT+LYFTFYGMM +
Sbjct: 1276 AFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLYFTFYGMMAVGL 1335
Query: 1301 TPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDD 1360
TPN ++AAII++ Y +WNLFSG++I +IP++WRWY W P+AW+LYGL SQFGD
Sbjct: 1336 TPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGDIQ 1395
Query: 1361 KLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+++ T V + D FGF H+FL + + V FA FA +F++AI F FQ+R
Sbjct: 1396 HVLEGDTRT----VAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSFAIMKFNFQRR 1450
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1794 bits (4646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 872/1440 (60%), Positives = 1092/1440 (75%), Gaps = 29/1440 (2%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF-------KNVVGDVKE 53
MW ++VFSR+S E +DEEALRWAALE+LPTY R RR I G
Sbjct: 26 MWRRGDDVFSRSSR---EEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGV 82
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E+R +L+RLV ++D E+F +++ R + V +++P IEVRF++L E+ V
Sbjct: 83 VDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEV 142
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
+G+ LPT+ N I N E L I + + +L D+SGII+P R+TLLLGPP SG
Sbjct: 143 RVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSG 202
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAGRLG L+ SGK+TYNGHG +EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 203 KTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFS 262
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+
Sbjct: 263 ARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEI 322
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VGDEML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ +
Sbjct: 323 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTV 382
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQIVYQGPR VL+FF SMGF CP RK VA
Sbjct: 383 HILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVA 442
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTSKKDQ QYW+ PYR+++ +F AF S+HTG+ ++ ELAVPFD+ +HPA
Sbjct: 443 DFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPA 502
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+T++YG ELLK + + ++LLMKRNSF+Y+F+ QL++V+LI MT+FFRT M +
Sbjct: 503 ALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDS 562
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
+ GG+Y+GAL+F +++I+FNGF+E+++ V KLPV +K RDL FYP+W YTIPSW L IP
Sbjct: 563 VTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIP 622
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ IE G +V +TYYVIG+D NV F +Q LL ++QM+ LFR IG RNMIVAN F
Sbjct: 623 ITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVF 682
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNS 711
SF +L+ M LGGFI++R+ + KWWIWG+W+SP+MYAQNA SVNE +GHSW+K + S
Sbjct: 683 ASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSAS 742
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LG +L+ R +FPE+ WYWIG GAM+G+T+LFNALFT L+YL P G + VS++E
Sbjct: 743 NETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE 802
Query: 772 LQERDRRRKGENV-VIELREYLQRSSSLNG-----------KYFKQKGMVLPFQPLSMAF 819
L+E+ GE V + L R NG Q+GMVLPF PLS++F
Sbjct: 803 LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSF 862
Query: 820 GNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
N+ Y VD+P E+K +GV +DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 863 DNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 922
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
TGG IEG I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T
Sbjct: 923 TGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNT 982
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
++ F+EEVMELVEL SL AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 983 RKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1042
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
DARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IYAGPLG S
Sbjct: 1043 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSS 1102
Query: 1060 ELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVES 1119
ELIKYFE++ GV KI+ GYNPA WMLEVT+ +E LGVDF++IY++S L+QRN+ L++
Sbjct: 1103 ELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKD 1162
Query: 1120 LSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSI 1179
LS+P+P S L F T+YSQS Q +ACL KQNLSYWRNP Y AVRFF+T VI+L+ G+I
Sbjct: 1163 LSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTI 1222
Query: 1180 CWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALP 1239
W G K QDLFNAMGSMY AVLFIG+ N ++VQPVV+VER V YRERAAGMYSA P
Sbjct: 1223 FWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFP 1282
Query: 1240 FAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTA 1299
+AF QVVIE PY QA +Y I Y+M FEWTA KF Y+FFM FT+LYFTFYGMM
Sbjct: 1283 YAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVG 1342
Query: 1300 ITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDD 1359
+TPN+++A+I+++ Y +WNLFSGF+I R+PI+WRWY WA P+AW+LYGL SQFGD
Sbjct: 1343 LTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI 1402
Query: 1360 DKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+ + DGT PVK +++ FGF+H +L +V AFA +FA +F +AI F FQKR
Sbjct: 1403 E--TPMEDGT---PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1791 bits (4640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 871/1440 (60%), Positives = 1091/1440 (75%), Gaps = 29/1440 (2%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF-------KNVVGDVKE 53
MW ++VFSR+S E +DEEALRWAALE+LPTY R RR I G
Sbjct: 26 MWRRGDDVFSRSSR---EEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGV 82
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV L +E+R +L+RLV ++D E+F +++ R + V +++P IEVRF++L E+ V
Sbjct: 83 VDVHGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEV 142
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
+G+ LPT+ N I N E L I + + +L D+SGII+P R+TLLLGPP SG
Sbjct: 143 RVGNSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSG 202
Query: 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
KTTLLLALAGRLG L+ SGK+TYNGHG +EFVP RT+AY+SQ D + EMTVRETL F+
Sbjct: 203 KTTLLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFS 262
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+GGQ+ ++ +YI+KILGL+
Sbjct: 263 ARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEI 322
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
CADT+VGDEML+GISGGQ+KR+TTGE+LVGPAR LFMDEIS GLDSSTT+QI+ L+ +
Sbjct: 323 CADTMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTV 382
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
L GT VISLLQPAPE Y LFDD+ILLS+GQIVYQGPR VL+FF S GF CP RK VA
Sbjct: 383 HILGGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVA 442
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTSKKDQ QYW+ PYR+++ +F AF S+HTG+ ++ ELAVPFD+ +HPA
Sbjct: 443 DFLQEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPA 502
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
AL+T++YG ELLK + + ++LLMKRNSF+Y+F+ QL++V+LI MT+FFRT M +
Sbjct: 503 ALATTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDS 562
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
+ GG+Y+GAL+F +++I+FNGF+E+++ V KLPV +K RDL FYP+W YTIPSW L IP
Sbjct: 563 VTSGGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIP 622
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
+ IE G +V +TYYVIG+D NV F +Q LL ++QM+ LFR IG RNMIVAN F
Sbjct: 623 ITFIEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVF 682
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNS 711
SF +L+ M LGGFI++R+ + KWWIWG+W+SP+MYAQNA SVNE +GHSW+K + S
Sbjct: 683 ASFMLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSAS 742
Query: 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKE 771
N +LG +L+ R +FPE+ WYWIG GAM+G+T+LFNALFT L+YL P G + VS++E
Sbjct: 743 NETLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEE 802
Query: 772 LQERDRRRKGENV-VIELREYLQRSSSLNG-----------KYFKQKGMVLPFQPLSMAF 819
L+E+ GE V + L R NG Q+GMVLPF PLS++F
Sbjct: 803 LKEKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSF 862
Query: 820 GNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
N+ Y VD+P E+K +GV +DRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRK
Sbjct: 863 DNVRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRK 922
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
TGG IEG I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T
Sbjct: 923 TGGYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNT 982
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
++ F+EEVMELVEL SL AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGL
Sbjct: 983 RKMFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1042
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
DARAAAIVMRTVRN VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IYAGPLG S
Sbjct: 1043 DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSS 1102
Query: 1060 ELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVES 1119
ELIKYFE++ GV KI+ GYNPA WMLEVT+ +E LGVDF++IY++S L+QRN+ L++
Sbjct: 1103 ELIKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKD 1162
Query: 1120 LSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSI 1179
LS+P+P S L F T+YSQS Q +ACL KQNLSYWRNP Y AVRFF+T VI+L+ G+I
Sbjct: 1163 LSQPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTI 1222
Query: 1180 CWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALP 1239
W G K QDLFNAMGSMY AVLFIG+ N ++VQPVV+VER V YRERAAGMYSA P
Sbjct: 1223 FWDLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFP 1282
Query: 1240 FAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTA 1299
+AF QVVIE PY QA +Y I Y+M FEWTA KF Y+FFM FT+LYFTFYGMM
Sbjct: 1283 YAFGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVG 1342
Query: 1300 ITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDD 1359
+TPN+++A+I+++ Y +WNLFSGF+I R+PI+WRWY WA P+AW+LYGL SQFGD
Sbjct: 1343 LTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDI 1402
Query: 1360 DKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+ + DGT PVK +++ FGF+H +L +V AFA +FA +F +AI F FQKR
Sbjct: 1403 E--TPMEDGT---PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1790 bits (4637), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 853/1417 (60%), Positives = 1089/1417 (76%), Gaps = 14/1417 (0%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQ 62
N+ +FSR+S RDE +DEEAL+WAALE+LPT+ R R+G+ G EVD+++L Q
Sbjct: 32 NNGVEIFSRSS--RDE-DDEEALKWAALEKLPTFDRLRKGLLFGSQGAAAEVDINDLGFQ 88
Query: 63 EQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPT 122
E++ +L+RLV ++D E+F +++ R + V ++LP IEVR+++L +++ ++GSR+LPT
Sbjct: 89 ERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYEHLNIDADAYVGSRSLPT 148
Query: 123 IPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
NF+ N E LL L I + +LTIL D+SGII+P R+TLLLGPPSSGKTTLLLALA
Sbjct: 149 FMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTLLLGPPSSGKTTLLLALA 208
Query: 183 GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G+L L+V+GK++YNGH EFVP RT+AY+SQ D + EMTVRETL+F+ +CQGVGS+
Sbjct: 209 GKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMTVRETLEFSARCQGVGSR 268
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
++M+ EL+RREK A IKPD D+DI+MK+ A GQ+ ++V +Y++KILGLD CADT+VGD+
Sbjct: 269 FEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYVLKILGLDICADTMVGDD 328
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
M++GISGGQKKR+TTGE+LVGP++ LFMDEIS GLDSSTTY I+ L+ S + L GT VI
Sbjct: 329 MIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSIVNSLRQSVQILKGTAVI 388
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSK 422
SLLQPAPE Y LFDD+ILLS+G IVYQGPR VL+FF SMGF CP+RK VADFLQEVTSK
Sbjct: 389 SLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFKCPQRKGVADFLQEVTSK 448
Query: 423 KDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGE 482
KDQ+QYWS PYR+I+ +FAEA+ S+H G+ L +ELA PFD+ HPAAL+ KYG
Sbjct: 449 KDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPFDKTKCHPAALTNEKYGI 508
Query: 483 KRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542
+ ELLK +LLLMKRNSF+Y+FKF QL I+ALITMT+FFRT M T DDGG+Y G
Sbjct: 509 GKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFFRTEMPRDTTDDGGIYAG 568
Query: 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFW 602
AL+F +++I+FNG +E++M + KLPV YK RDL F+PSW Y IPSW L IP +L+E G W
Sbjct: 569 ALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAIPSWILKIPVTLVEVGLW 628
Query: 603 VAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVM 662
V +TYYVIG+DPN+ RF +Q LL ++QM+ G+FR IG++GR M VA+TFGSFA+L+
Sbjct: 629 VILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGRTMGVASTFGSFALLLQF 688
Query: 663 ALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQ 722
ALGGF++SRD + WWIWG+W+SP+MY+ N+ VNEF G W+ N +LG +++
Sbjct: 689 ALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIVPGGNETLGSTVVKS 748
Query: 723 RSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782
R FPE+YWYWIGVGA++G+T++FN ++ L+YLNP K QAV+ ++ + GE
Sbjct: 749 RGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPFDKPQAVLP----EDGENAENGE 804
Query: 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRL 842
V S++ +KGMVLPF+P S+ F ++ Y VD+P E+K++G EDRL
Sbjct: 805 --VSSQITSTDGGDSISESQNNKKGMVLPFEPHSITFDDVVYSVDMPQEMKEQGAGEDRL 862
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK+QETFAR
Sbjct: 863 VLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGEIKISGYPKKQETFAR 922
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
ISGYCEQNDIHSP +TV ESL++SAWLRLP +++ +T++ FV+EVMELVEL L AL+G
Sbjct: 923 ISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMFVDEVMELVELGPLRSALVG 982
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TGRT+V
Sbjct: 983 LPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1042
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAA 1082
CTIHQPSIDIFE+FDEL MKRGG+ IY GPLG SC LIKYFE+ GV KI+ GYNPA
Sbjct: 1043 CTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIKYFESNPGVAKIKEGYNPAT 1102
Query: 1083 WMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFAN 1142
WMLEVT+ +E LG+DF E+Y+ S+L++RN+ L+ L P P SK L+F T+YSQSF
Sbjct: 1103 WMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVPRPGSKDLHFETQYSQSFWT 1162
Query: 1143 QFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYV 1202
Q +ACL KQ+ SYWRNP YTAVRF +T I+L+ G++ W G K QDL NAMGSMY
Sbjct: 1163 QCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDLGTKVSKSQDLLNAMGSMYA 1222
Query: 1203 AVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSI 1262
AVLF+G+ NAS+VQPVV++ER V YRERAAGMYSA+P+AF QV IE PY+F Q++ Y I
Sbjct: 1223 AVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFGQVSIEIPYIFVQSVFYGII 1282
Query: 1263 FYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFS 1322
Y+M FEW KF Y+F M+FT+LYFTFYGMM A+TPN NVA+I+AA Y +WNLFS
Sbjct: 1283 VYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFS 1342
Query: 1323 GFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVF 1382
GF+I R+P++WRWYYWANP+AW+LYGL SQFGD KLSD V+ L+ F
Sbjct: 1343 GFIIPRPRMPVWWRWYYWANPVAWTLYGLVASQFGDIQ--TKLSDNE---TVEQFLRRYF 1397
Query: 1383 GFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
GF+HDFL + A++ A+ +FA FA+AIKAF FQ+R
Sbjct: 1398 GFKHDFLGVVAAVLTAYVFMFAFTFAFAIKAFNFQRR 1434
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1779 bits (4609), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 866/1424 (60%), Positives = 1095/1424 (76%), Gaps = 21/1424 (1%)
Query: 7 NVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQEQRL 66
+ F R S R+E +DEEAL+WAA+E+LPTY R R+GI G V+EVD+ L +QE+R
Sbjct: 31 DAFGR--SVREE-DDEEALKWAAIEKLPTYDRMRKGIL--TAGGVEEVDIGGLGLQERRN 85
Query: 67 VLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNF 126
+++RLV E+D ERF ++R R E V ++ P IEVRF+NL++++ ++G+R +PT NF
Sbjct: 86 LIERLVRTAEEDNERFLLKLRDRMERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNF 145
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
N +L +RI + ++IL D+SGIIRP R++LLLGPP SGKT+LLLALAG+L
Sbjct: 146 FSNKIMDVLSAMRIVSSGKRPISILHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLD 205
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
L+VSG++TYNGH EFVP RTSAY+ Q D + EMTVRETL F+ +CQGVG++YDM+
Sbjct: 206 STLKVSGRVTYNGHDMDEFVPQRTSAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDML 265
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
TEL+RREK A IKPD D+D++MK+ ++ GQ+ S+V +YI+KILGL+ CADT+VGD M++G
Sbjct: 266 TELSRREKEASIKPDPDIDVYMKAISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRG 324
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
ISGGQKKR+TTGE+LVGPA+ LFMDEIS GLDSSTTYQI+ L+ S L GT +I+LLQ
Sbjct: 325 ISGGQKKRVTTGEMLVGPAKALFMDEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQ 384
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
PAPE Y+LFDD++LLSEGQIVYQGPR ++L+FF +MGF CP+RK VADFLQEVTS+KDQ
Sbjct: 385 PAPETYDLFDDIVLLSEGQIVYQGPRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQH 444
Query: 427 QYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSE 486
QYW PYRYIS F+EAF +H G+NL EL VPFDR NHPAAL+TS+YG + E
Sbjct: 445 QYWCRRDEPYRYISVNDFSEAFKEFHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKME 504
Query: 487 LLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF 546
L K F+ + LLMKRNSF+Y+FK +QL+I+ I MTVF RT MH ++++DG ++LGA++
Sbjct: 505 LTKACFSREWLLMKRNSFVYIFKILQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFL 564
Query: 547 SMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 606
+V LFNGF E++M +AKLP+ YK RDL FYPSW Y +P+W L IP S +E W+ +T
Sbjct: 565 GLVTHLFNGFAELAMSIAKLPIFYKQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMT 624
Query: 607 YYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGG 666
YYV+G+DPN+ RF R +L + QM+ GLFR++ +LGR M+VA+TFGSFA L+++ LGG
Sbjct: 625 YYVMGFDPNIERFFRHYVLLVLISQMASGLFRLLAALGREMVVADTFGSFAQLILLVLGG 684
Query: 667 FIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDK--KAGNSNFSLGEAILRQRS 724
F+ISR++I KWWIWG+W SPLMYAQNA +VNEFLGHSW+K SN +LG +L+ R
Sbjct: 685 FLISRENIKKWWIWGYWSSPLMYAQNAIAVNEFLGHSWNKVVDPTQSNDTLGVQVLKVRG 744
Query: 725 LFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV 784
+F ++ WYWIGVGA+LGY +LFN LF FL +L+PLGK QAVVS++EL+E+ R GENV
Sbjct: 745 IFVDANWYWIGVGALLGYIMLFNILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENV 804
Query: 785 -VIELREYLQRSSS--------LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
++ L Q S S + G +++GMVLPF PLS+ F NI Y VD+P E+K +
Sbjct: 805 ELLTLGTDSQNSPSDANAGRGEITGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDK 864
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
GV EDRL LL V+GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISGYPK
Sbjct: 865 GVTEDRLLLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPK 924
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+QETFARI+GYCEQNDIHSP +TV ESLL+SAWLRLPSE++ E ++ FVEEVMELVELTS
Sbjct: 925 KQETFARIAGYCEQNDIHSPHVTVYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTS 984
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L GAL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V
Sbjct: 985 LRGALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1044
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
+TGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG SC LI YFE ++GV KI+
Sbjct: 1045 DTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIK 1104
Query: 1076 PGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTK 1135
GYNPA WMLEVT+ +E LG++FAE+YR S+L+QRN+ L+ LS P P S L+F T+
Sbjct: 1105 DGYNPATWMLEVTTLAQEDILGINFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQ 1164
Query: 1136 YSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFN 1195
+SQ F Q +ACL KQ+ SYWRNP YTA R F+T VI+L+ G+I G K + DLFN
Sbjct: 1165 FSQPFFTQCMACLWKQHKSYWRNPSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFN 1224
Query: 1196 AMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQ 1255
++GSMY AVLFIGI N VQP+V VER V YRE+AAGMYSALP+AFAQV+IE P++F Q
Sbjct: 1225 SLGSMYAAVLFIGIQNGQTVQPIVDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQ 1284
Query: 1256 ALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCY 1315
++Y I YS+ F+WT KF Y+FFM+FT +YFTFYGMM A+TPN ++AAI++ Y
Sbjct: 1285 TVVYGLIVYSLIGFDWTVEKFFWYMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFY 1344
Query: 1316 MLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVK 1375
+WN+F+GF+I RIPI+WRWY WA P+AW+LYGL SQ+GD L DG V+
Sbjct: 1345 CIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITN-STLEDGE---VVQ 1400
Query: 1376 HLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
++ FGFRHD+L VV FA +FA +FA++IK F FQ+R
Sbjct: 1401 DYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1774 bits (4596), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 838/1421 (58%), Positives = 1085/1421 (76%), Gaps = 24/1421 (1%)
Query: 3 NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF--KNVVGDVKEVDVSELA 60
+S +FSR+S R+E +DEEALRWAALE+LPT+ R R+GI + G + E+D+ +L
Sbjct: 23 DSGREIFSRSS--REE-DDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDIQKLG 79
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
Q+ + +L+RL+ +D+ E+ +++KR + V ++LP IEVRF +L VE+ VH+G RAL
Sbjct: 80 FQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGGRAL 139
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PT NFI N + L L + + K TIL+D+SGI++P R+ LLLGPPSSGKTTLLLA
Sbjct: 140 PTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTLLLA 199
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAG+L L+ +G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A + QGVG
Sbjct: 200 LAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQGVG 259
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
S+YDM+TELARREK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CADT+VG
Sbjct: 260 SRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADTMVG 319
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D+ML+GISGGQKKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++ +GT
Sbjct: 320 DDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFNGTA 379
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+ISLLQPAPE + LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFLQEVT
Sbjct: 380 LISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQEVT 439
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ QYW+ PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+T KY
Sbjct: 440 SKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTTKKY 499
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G EL+KTSF+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT DG LY
Sbjct: 500 GVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDGSLY 559
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
GAL+F +++++FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S +E+
Sbjct: 560 TGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFMEAA 619
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
+TYYVIG+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+FAMLV
Sbjct: 620 LTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFAMLV 679
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
ALGG ++SRD I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG L
Sbjct: 680 FFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLGVTFL 739
Query: 721 RQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERD--RR 778
+ R P +YWYWIG GA+LG+ +LFN FT L++LN LGK QAV++++ + +
Sbjct: 740 KSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDETELQS 799
Query: 779 RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
+ E VV + N K++GMVLPF+P S+ F N+ Y VD+P E+ ++G
Sbjct: 800 ARSEGVV---------EAGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQGTQ 846
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
EDRL LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK Q+
Sbjct: 847 EDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPKNQQ 906
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFARISGYCEQ DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT L
Sbjct: 907 TFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTPLRQ 966
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
AL+GLPG +GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TG
Sbjct: 967 ALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1026
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
RT+VCTIHQPSIDIFE+FDEL +KRGGE IY GPLG +S LI YFE+++G+ KI GY
Sbjct: 1027 RTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKITEGY 1086
Query: 1079 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQ 1138
NPA WMLEV++ +E+ LGVDFA++Y+ S L++RN+EL++ LS+P+P SK L F T+YSQ
Sbjct: 1087 NPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQYSQ 1146
Query: 1139 SFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMG 1198
SF Q +A L KQ+ SYWRNP YTAVRF +T+ I+LM G++ W G K + +QDL NAMG
Sbjct: 1147 SFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSNAMG 1206
Query: 1199 SMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALI 1258
SMY AVLF+G+ NA++VQPVV+VER V YRE+AAGMYSA+P+AFAQV IE PYV QA++
Sbjct: 1207 SMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQAIV 1266
Query: 1259 YCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLW 1318
Y I Y+M FEWTAVKF Y+FFMY + L FTFYGMM A+TPNH++A+++++ Y +W
Sbjct: 1267 YGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIW 1326
Query: 1319 NLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLL 1378
NLFSGF+I +P++W WYYW P+AW+LYGL SQFGD + + S+ + VK +
Sbjct: 1327 NLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITEPMADSN----MSVKQFI 1382
Query: 1379 KDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
++ +G+R FL + AM V F +FA+IFA IK+F FQKR
Sbjct: 1383 REFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1764 bits (4568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 869/1442 (60%), Positives = 1093/1442 (75%), Gaps = 28/1442 (1%)
Query: 1 MWNSAEN-VFSRT---SSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDV----- 51
MW SA+N VFSR+ SS D +DEEALRWAALE+LPTY R RR + V
Sbjct: 28 MWWSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEA 87
Query: 52 --KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTV 109
K VDV L QE+R +L+RLV EDD ERF ++++R + V +++P IEVRF++L
Sbjct: 88 GKKVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEA 147
Query: 110 ESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGP 169
E+ V +G+ LPT+ N + N E L I + + IL D+SGI++P R+TLLLGP
Sbjct: 148 EAEVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGP 207
Query: 170 PSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229
P SGKTTLLLALAGRLG ++ SG++TYNGH ++FVP RT+AY+SQ D + EMTVRET
Sbjct: 208 PGSGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRET 267
Query: 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL 289
L F+ +CQGVGS++DM+TEL+RREK A IKPD D+D FMK+ A+ GQ+T+L+ +YI+KIL
Sbjct: 268 LSFSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKIL 327
Query: 290 GLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL 349
GLD CADT+VGD+M++GISGGQ+KR+TTGE+LVGPA LFMDEIS GLDSSTT+QI+K L
Sbjct: 328 GLDICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSL 387
Query: 350 KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKR 409
+ + L GT VISLLQPAPE Y+LFDD+ILLS+GQIVYQGPR VL+FF MGF CP+R
Sbjct: 388 RQAIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPER 447
Query: 410 KNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRF 469
K VADFLQEVTS+KDQ+QYW PYRY+ FA AF S+HTGK+++ ELA PFD+
Sbjct: 448 KGVADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSK 507
Query: 470 NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTM 529
NHPAAL+TS+YG ELLK + + + LLMKRNSF+Y+F+ QL++V+ I MTVFFRT M
Sbjct: 508 NHPAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKM 567
Query: 530 HHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWA 589
H ++ DG +++GAL+FS+++I+FNG +E+ + + KLPV +K RDL F+P+W YTIPSW
Sbjct: 568 HRDSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWI 627
Query: 590 LSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIV 649
L IP S IE G +V ++YYVIG+DP+ RF +Q LL ++QM+ LFR +G RNMIV
Sbjct: 628 LKIPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIV 687
Query: 650 ANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG 709
AN FGSF +L+ M LGGFI+ R+ + KWWIWG+W+SP+MYAQNA SVNEFLGHSWDK
Sbjct: 688 ANVFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWDKVLN 747
Query: 710 N--SNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVV 767
N SN +LG LR R +FPE+ WYWIG GA+LG+ +LFN LFT L+YL P GK Q V
Sbjct: 748 NSLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSV 807
Query: 768 SKKELQERDRRRKGENVVIE---------LREYLQRSSSL-NGKYFKQKGMVLPFQPLSM 817
S++EL+E+ G + ++ + + + SS + + Q+GMVLPF PLS+
Sbjct: 808 SEEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSL 867
Query: 818 AFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877
F NI Y VD+P E+K G++EDRL+LL V+G+FRPGVLTAL+GVSGAGKTTLMDVLAG
Sbjct: 868 TFDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAG 927
Query: 878 RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 937
RKTGG IEG+I ISGYPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++
Sbjct: 928 RKTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDS 987
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
T++ F+EEVMELVEL L AL+GLPG+NGLSTEQRKRLTIAVELVANPSI+FMDEPTS
Sbjct: 988 NTRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1047
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK 1057
GLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG +
Sbjct: 1048 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQ 1107
Query: 1058 SCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELV 1117
S ELIKYFE ++GV +I+ GYNPA WMLEV++ +E LGVDF +IYR+S LFQRN+ L+
Sbjct: 1108 SSELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALI 1167
Query: 1118 ESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLG 1177
+ LS P P S +L F TKYS SF NQ LACL K +LSYWRNP Y A+R F+T VI+L+ G
Sbjct: 1168 QELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFG 1227
Query: 1178 SICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSA 1237
+I W G K QDLFNAMGSMY AVLFIG+ N+ +VQPVVSVER V YRERAAGMYSA
Sbjct: 1228 TIFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSA 1287
Query: 1238 LPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMT 1297
P+AF QV IEFPY Q++IY I YSM F+WTA KF Y+FFM+FT LYFTFYGMM
Sbjct: 1288 FPYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMA 1347
Query: 1298 TAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFG 1357
+TP+++VA+I+++ Y +WNLFSGF+I ++PI+WRWY W P+AW+LYGL SQFG
Sbjct: 1348 VGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFG 1407
Query: 1358 DDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQ 1417
D + + DGT PVK +++ F F+H +L + ++VAF +FA +F +AI FQ
Sbjct: 1408 --DIMTPMDDGT---PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQ 1462
Query: 1418 KR 1419
KR
Sbjct: 1463 KR 1464
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q7PC80|PDR1_ORYSJ Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1750 bits (4532), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 843/1427 (59%), Positives = 1065/1427 (74%), Gaps = 29/1427 (2%)
Query: 16 RDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKE-----------VDVSELAVQEQ 64
R E +DEEALRWAAL++LPTY R R I V G+ E VDV L E+
Sbjct: 48 RGEEDDEEALRWAALQKLPTYDRVRAAILPMVEGEGGEAGGGGGGRRVVVDVHSLGPHER 107
Query: 65 RLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIP 124
R +L+RLV +DD ERF ++++R V +++P IEVRF++L VE+ V +G+ +PT+
Sbjct: 108 RALLERLVRVADDDNERFLLKLKERISRVGIDMPTIEVRFEHLEVEAEVRVGNSGIPTVL 167
Query: 125 NFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184
N I N E L I + L IL D+SGII+P R+TLLLGPP SGKTT LLALAGR
Sbjct: 168 NSITNKIEEAANALGILPTRKQTLRILHDISGIIKPKRMTLLLGPPGSGKTTFLLALAGR 227
Query: 185 LGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
L L+ SG++TYNGH ++FVP RT+AY+SQ D + EMTVRETL F+ +CQGVGS++D
Sbjct: 228 L-KDLKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLSFSARCQGVGSRFD 286
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
M+TEL RREK A IKPD D+D FMK+ A+ GQ+++L+ +YI+KILGL+ CADT+VGD+M+
Sbjct: 287 MLTELTRREKAANIKPDADVDAFMKASAMEGQESNLITDYILKILGLEICADTMVGDDMV 346
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+GISGGQ+KR+TTGE+LVGPA FMDEIS GLDSSTT+QI+K L+ + L GT VISL
Sbjct: 347 RGISGGQRKRVTTGEMLVGPANAFFMDEISTGLDSSTTFQIVKSLRQTIHILGGTAVISL 406
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKD 424
LQPAPE Y+LFDD+ILLS+G IVYQGPR +VL+FF MGF CP+RK VADFLQEVTS+KD
Sbjct: 407 LQPAPETYDLFDDIILLSDGHIVYQGPRENVLEFFELMGFKCPERKGVADFLQEVTSRKD 466
Query: 425 QEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKR 484
Q+QYW+ PYRY+ +FA AF S+HTG++++ ELA PFD+ +HPAAL+TS+YG
Sbjct: 467 QKQYWAQHDKPYRYVPIKEFASAFQSFHTGRSIANELATPFDKSKSHPAALTTSRYGVSA 526
Query: 485 SELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544
ELLK + + +LLL+KRNSF+Y+F+ IQL+ V+ + MTVFFRT MH ++ DG +++GAL
Sbjct: 527 MELLKANIDRELLLIKRNSFVYIFRTIQLMTVSAMAMTVFFRTKMHRDSVADGVIFMGAL 586
Query: 545 YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVA 604
+F++++I+ NG +E+ + + KLPV +K RDL F+P+W YTIPSW L P S IE G +
Sbjct: 587 FFAVMMIMLNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILKSPMSFIEVGGFCF 646
Query: 605 VTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMAL 664
++YYVIG+DPNV RF +Q LL + QM+ LFR +G RN+IVAN FGSF +L+ M L
Sbjct: 647 MSYYVIGFDPNVGRFFKQYLLMLAVSQMAAALFRFVGGAARNLIVANVFGSFMLLIFMVL 706
Query: 665 GGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNS--NFSLGEAILRQ 722
GGFI++RD + KWWIWG+W+SP+MYAQNA SVNEFLGHSWDK NS N +LG L
Sbjct: 707 GGFILARDKVNKWWIWGYWISPMMYAQNAVSVNEFLGHSWDKVLNNSLSNETLGVQALMS 766
Query: 723 RSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782
R +FPE+ WYWIG GA+LG+ +LFN LFT L+YL P GK Q +S++EL+E+ G
Sbjct: 767 RGIFPEAKWYWIGFGALLGFIMLFNILFTLALTYLKPDGKSQPSISEEELKEKQANINGN 826
Query: 783 NVVIELREYLQR----------SSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVEL 832
+ ++ S + Q+GMVLPF PLS+ F +I Y VD+P E+
Sbjct: 827 VLDVDTMASSNNLAIVGSTGTGSEIADNSQPTQRGMVLPFTPLSLTFEDIKYSVDMPQEM 886
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K G++EDRL+LL V+G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEG+I ISG
Sbjct: 887 KAHGIVEDRLELLKGVSGCFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGNISISG 946
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
YPK+QETFAR+SGYCEQNDIHSP +TV ESLLFSAWLRLP +++ T++ F+EEVMELVE
Sbjct: 947 YPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSNTRKMFIEEVMELVE 1006
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L L AL+GLPG+NGLS EQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVR
Sbjct: 1007 LKPLRDALVGLPGVNGLSIEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1066
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVP 1072
N VNTGRT+VCTIHQPSIDIFE+FDEL MKRGGE IY GPLG S ELIKYFE ++GV
Sbjct: 1067 NTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHHSSELIKYFEGIQGVS 1126
Query: 1073 KIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNF 1132
KI GYNPA WMLEVT+ +E L VDF +IYR+S LFQRN+ L++ LS P P S +L F
Sbjct: 1127 KITDGYNPATWMLEVTTVSQEQALDVDFCDIYRKSELFQRNKALIQELSTPPPGSSELYF 1186
Query: 1133 STKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQD 1192
T+YSQSF Q LACL KQ+LSYWRNP Y A+R F+T VI+L+ G+I W G K QD
Sbjct: 1187 PTQYSQSFLIQCLACLWKQHLSYWRNPPYNAIRLFFTTVIALIFGTIFWDLGGKMGQSQD 1246
Query: 1193 LFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYV 1252
LFNAMGSMY AVLFIG+ N +VQPVVSVER V YRERAAGMYSALP+AF QV IEFPY
Sbjct: 1247 LFNAMGSMYAAVLFIGVLNGQSVQPVVSVERTVFYRERAAGMYSALPYAFGQVAIEFPYT 1306
Query: 1253 FGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAA 1312
Q++IY I YSM F+WT KF Y+FFM+FT+LYFTFYGMM +TP+++VA+I+++
Sbjct: 1307 LVQSVIYSIIVYSMIGFQWTVAKFFWYLFFMFFTLLYFTFYGMMAVGLTPSYHVASIVSS 1366
Query: 1313 PCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSV 1372
Y +WNLF+GF+I+ P++WRWY W P+AW+LYGL SQ+G D + + DG +
Sbjct: 1367 AFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYG--DIVTPMDDG---I 1421
Query: 1373 PVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
PV +++ F F+H +L ++VAF +FA +F +AI FQKR
Sbjct: 1422 PVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1419 | ||||||
| 224143447 | 1420 | predicted protein [Populus trichocarpa] | 1.0 | 0.999 | 0.852 | 0.0 | |
| 449443129 | 1420 | PREDICTED: ABC transporter G family memb | 1.0 | 0.999 | 0.821 | 0.0 | |
| 449523499 | 1420 | PREDICTED: LOW QUALITY PROTEIN: ABC tran | 1.0 | 0.999 | 0.819 | 0.0 | |
| 280967727 | 1427 | putative ABC transporter [Malus x domest | 1.0 | 0.994 | 0.819 | 0.0 | |
| 225445364 | 1421 | PREDICTED: ABC transporter G family memb | 1.0 | 0.998 | 0.830 | 0.0 | |
| 356563075 | 1418 | PREDICTED: ABC transporter G family memb | 0.998 | 0.999 | 0.818 | 0.0 | |
| 356511619 | 1418 | PREDICTED: ABC transporter G family memb | 0.998 | 0.999 | 0.820 | 0.0 | |
| 356563077 | 1426 | PREDICTED: ABC transporter G family memb | 0.998 | 0.993 | 0.813 | 0.0 | |
| 15225814 | 1420 | ABC transporter G family member 32 [Arab | 1.0 | 0.999 | 0.790 | 0.0 | |
| 297822271 | 1420 | ATPDR4/PDR4 [Arabidopsis lyrata subsp. l | 1.0 | 0.999 | 0.792 | 0.0 |
| >gi|224143447|ref|XP_002324959.1| predicted protein [Populus trichocarpa] gi|222866393|gb|EEF03524.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2493 bits (6460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1210/1420 (85%), Positives = 1319/1420 (92%), Gaps = 1/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+RT+SFR+ EDEEALRWAALERLPTYAR RRGIFKNVVGD KE+D+SEL
Sbjct: 1 MWNSAENAFTRTASFREGGEDEEALRWAALERLPTYARVRRGIFKNVVGDHKEMDLSELG 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQ+LVL+RLV++V++DPERFFDRMRKR +AV LE PKIEVR QN+TVESFVH+GSRAL
Sbjct: 61 AQEQKLVLERLVSSVDEDPERFFDRMRKRLDAVRLEFPKIEVRVQNVTVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+FNMTEALLRQLRIYRGNRSKLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFVFNMTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG+ LQ+SGKITYNGH EFV PRTSAYVSQ DW VAEMTV+ETL+FAG CQGVG
Sbjct: 181 LAGRLGNDLQMSGKITYNGHSLNEFVAPRTSAYVSQHDWHVAEMTVKETLEFAGCCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
SKYDM+ ELARREK AGIKPDEDLDIFMKS ALGGQ+T+LVVEYIMKILGLD CADTLVG
Sbjct: 241 SKYDMLLELARREKFAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL+HSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQPAPE YELFDDV+LL EGQIVYQGPR + LDFF+SMGFSCP+RKNVADFLQEV
Sbjct: 361 VISLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFSSMGFSCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRYI P KF EAFHS+ G++LSEELAVPFD+R+NHPAALSTSK+
Sbjct: 421 SKKDQEQYWSVPNRPYRYIPPRKFVEAFHSFLVGRSLSEELAVPFDKRYNHPAALSTSKF 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SEL + FNWQ LLMKRNSFIYVFKFIQLL+VALITM+VFFR+TMH TI DGGL+
Sbjct: 481 GVKQSELFRICFNWQKLLMKRNSFIYVFKFIQLLLVALITMSVFFRSTMHRDTIYDGGLF 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+G++YFSMVIILFNGFTEVSMLVAKLPVLYKHRDL FYPSW YT+PSW LSIP SL+ESG
Sbjct: 541 VGSIYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLRFYPSWAYTLPSWVLSIPISLMESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYYVIGYDPN+ RF RQ LLYFFLHQMSI LFRVIGSLGR+MIVANTFGSFAMLV
Sbjct: 601 LWVAVTYYVIGYDPNITRFFRQFLLYFFLHQMSIALFRVIGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFWVSPLMYAQNAASVNEFLGHSWDK+AGN ++FSLGEA+
Sbjct: 661 VMALGGYIISRDYIPSWWIWGFWVSPLMYAQNAASVNEFLGHSWDKRAGNNTDFSLGEAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
LR RSLFPESYWYWIG+ A+LGYT+LFN LFTFFL+YLNPLGK QAVVSK+ELQERD+RR
Sbjct: 721 LRARSLFPESYWYWIGIAALLGYTVLFNLLFTFFLAYLNPLGKHQAVVSKEELQERDKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGENVVIELREYLQ S SLNGKYFK +GMVLPFQPLSM+F NINYFVDVPVELKQ+G++E
Sbjct: 781 KGENVVIELREYLQHSGSLNGKYFKPRGMVLPFQPLSMSFSNINYFVDVPVELKQQGIVE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG+I+ISGYPK+QET
Sbjct: 841 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGNIHISGYPKKQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQNDIHSP LTVLESLLFSAWLRLP+ + ++TQ+AFVEEVMELVELT LSGA
Sbjct: 901 FARVSGYCEQNDIHSPCLTVLESLLFSAWLRLPTVVNMDTQQAFVEEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG+NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG +SCELIKYFEAVEGVPKIR GYN
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFEAVEGVPKIRHGYN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PAAWMLEVTS EE+RLGVDFAEIYRRSNL QRNRELVE+LSKP+ S+K LNF TKY QS
Sbjct: 1081 PAAWMLEVTSSAEETRLGVDFAEIYRRSNLHQRNRELVENLSKPNSSAKDLNFPTKYCQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
F +Q LACL KQNLSYWRNPQYTAVRFFYTV+ISLMLG+ICW+FG+KREN Q+LFNAMGS
Sbjct: 1141 FFDQLLACLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGSKRENVQELFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY AVLFIGITNASAVQPVVSVER+VSYRERAAGMYSALPFAFAQVVIEFPYVFGQ +IY
Sbjct: 1201 MYAAVLFIGITNASAVQPVVSVERFVSYRERAAGMYSALPFAFAQVVIEFPYVFGQTIIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
C+IFYSMASF+WTA+KFI Y FFMYFTMLYFTFYGMMTTA+TPNHNVA+IIAAP YMLWN
Sbjct: 1261 CTIFYSMASFDWTALKFIWYSFFMYFTMLYFTFYGMMTTALTPNHNVASIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI HKRIPI+W WYYWANPIAW+LYGL SQ+G+D+KL+KLS+G +PVK +L+
Sbjct: 1321 LFSGFMIPHKRIPIWWSWYYWANPIAWTLYGLLISQYGNDNKLMKLSEGDRLLPVKQVLQ 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+VFG+RHDFL +AG MVV F +F +IFA+AIKAF FQ+R
Sbjct: 1381 EVFGYRHDFLGVAGLMVVGFCVLFGVIFAFAIKAFNFQRR 1420
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443129|ref|XP_004139333.1| PREDICTED: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2433 bits (6305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1166/1420 (82%), Positives = 1294/1420 (91%), Gaps = 1/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWN+A+NVF RT+SFR++ EDEEALRWAALERLPTY+R RRGIFKN+VGD KE+DVSEL
Sbjct: 1 MWNTADNVFVRTASFREDGEDEEALRWAALERLPTYSRVRRGIFKNIVGDTKEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
VQEQ+L++DRLV++V+DDPE FF R+R+R +AVDLE PKIEVRFQ LTVESFVH+G+RAL
Sbjct: 61 VQEQKLLIDRLVSSVDDDPEMFFQRVRRRFDAVDLEFPKIEVRFQQLTVESFVHIGTRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+ NM EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFMCNMMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG
Sbjct: 181 LAGRLGSDLQQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKYDMLMELARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
V+SLLQPAPE YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV
Sbjct: 361 VVSLLQPAPETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+Y
Sbjct: 421 SKKDQEQYWSVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLY
Sbjct: 481 GVKRLELLKTSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFS VIILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG
Sbjct: 541 LGALYFSTVIILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV VTYYVIGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLV
Sbjct: 601 IWVVVTYYVIGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++
Sbjct: 661 VMALGGYIISRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSLF ESYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RR
Sbjct: 721 LKARSLFSESYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE VIELR YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E
Sbjct: 781 KGETTVIELRHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
+RLQLLVNV+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+T
Sbjct: 841 ERLQLLVNVSGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDT 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQ DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGA
Sbjct: 901 FARVSGYCEQTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFEAVEGV KI+ GYN
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFEAVEGVQKIKAGYN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PAAWMLEVTS VEESRLGVDFAE+YRRS LFQRN +LVE+LS+P +SK+L+F TKYSQS
Sbjct: 1081 PAAWMLEVTSAVEESRLGVDFAEVYRRSTLFQRNLDLVETLSRPISNSKELSFPTKYSQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
NQFLACL KQNLSYWRNPQYTAV+FFYTV+ISLMLG+ICWKFGAKRE QQDLFNAMGS
Sbjct: 1141 SFNQFLACLWKQNLSYWRNPQYTAVKFFYTVIISLMLGTICWKFGAKRETQQDLFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
+Y AVLFIGITNA+AVQPVVS+ER+VSYRERAAG+YSALPFAFAQV IEFPYVF Q +IY
Sbjct: 1201 LYAAVLFIGITNATAVQPVVSIERFVSYRERAAGLYSALPFAFAQVAIEFPYVFAQTVIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
CSIFYSMA+F+WT +KFI YIFFMYFT+LYFTFYGMMTTAITPNHNV AIIAAP YMLWN
Sbjct: 1261 CSIFYSMAAFDWTILKFIWYIFFMYFTLLYFTFYGMMTTAITPNHNVGAIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI HKRIPI+WRWYYWANP+AWSLYGLQ SQ+GDD+KLVKLSDG SV + +LK
Sbjct: 1321 LFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLQVSQYGDDNKLVKLSDGINSVAIHDVLK 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
VFGFRHDFL +A MV F FA IFA+AIK+F FQ+R
Sbjct: 1381 HVFGFRHDFLGVAAIMVFGFCLFFATIFAFAIKSFNFQRR 1420
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449523499|ref|XP_004168761.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 32-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2428 bits (6293), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1164/1420 (81%), Positives = 1292/1420 (90%), Gaps = 1/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWN+A+NVF RT+SFR++ EDEEALRWAALERLPTY+R RRGIFKN+VGD KE+DVSEL
Sbjct: 1 MWNTADNVFVRTASFREDGEDEEALRWAALERLPTYSRVRRGIFKNIVGDTKEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
VQEQ+L++DRLV++V+DDPE FF R+R+R +AVDLE PKIEVRFQ LTVESFVH+G+RAL
Sbjct: 61 VQEQKLLIDRLVSSVDDDPEMFFQRVRRRFDAVDLEFPKIEVRFQQLTVESFVHIGTRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+ NM EALLR+L+IY RSKLTILD+++GIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFMCNMMEALLRKLKIYSSQRSKLTILDNVNGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ SG+ITYNGHGF EFVP RT+AYVSQQD +AE+TVRETLDFAG+CQGVG
Sbjct: 181 LAGRLGSDLQQSGRITYNGHGFNEFVPQRTAAYVSQQDRHIAEITVRETLDFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREKIAGIKPDEDLDIFMKS ALGGQ+TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 FKYDMLMELARREKIAGIKPDEDLDIFMKSLALGGQETSLVVEYIMKILGLDVCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+G ARVLFMDEIS GLDSSTTYQIIKYL+HST ALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGSARVLFMDEISTGLDSSTTYQIIKYLRHSTCALDSTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
V+SLLQPAPE YELFDDVILL EGQI+YQGPR SVL+FF +MGF+CP+RKNVADFLQEV
Sbjct: 361 VVSLLQPAPETYELFDDVILLCEGQIIYQGPRDSVLNFFTAMGFTCPERKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PY++I KFA+AF YH GKNL+EEL VPFDRR+NHPA+LS+S+Y
Sbjct: 421 SKKDQEQYWSVPDRPYQFIPAAKFAKAFRLYHVGKNLTEELEVPFDRRYNHPASLSSSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTSF+ LLMKRNSFIYVFKFIQLL+VA+ITM+VFFRTTM H TIDDGGLY
Sbjct: 481 GVKRLELLKTSFSLLRLLMKRNSFIYVFKFIQLLLVAMITMSVFFRTTMKHDTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFS VIILFNGFTEVSMLVAKLPV+YKHRDLHFYPSW+YT+PSW LSIP SL+ESG
Sbjct: 541 LGALYFSTVIILFNGFTEVSMLVAKLPVIYKHRDLHFYPSWIYTLPSWILSIPISLLESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV VTYYVIGYDP + RF RQLLL+F LHQMSI LFR++GSLGRNMIVANTFGSF MLV
Sbjct: 601 IWVVVTYYVIGYDPAITRFLRQLLLFFSLHQMSIALFRLMGSLGRNMIVANTFGSFTMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG-NSNFSLGEAI 719
VMALGG+IISRD IPKWWIWGFW SPLMYAQNAASVNEFLGHSWDK G N++ SLGE++
Sbjct: 661 VMALGGYIISRDRIPKWWIWGFWWSPLMYAQNAASVNEFLGHSWDKSVGKNTSMSLGESL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L+ RSL ESYWYWIGVGA+LGYT++FN+LFTFFL+YL PLGK QAVVSK+ELQER++RR
Sbjct: 721 LKARSLVSESYWYWIGVGALLGYTVIFNSLFTFFLAYLKPLGKSQAVVSKEELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE VIELR YLQ S SLNGKYFKQ+GMVLPFQ LSM+F NINY+VDVP+ELKQ+GV E
Sbjct: 781 KGETTVIELRHYLQYSGSLNGKYFKQRGMVLPFQQLSMSFSNINYYVDVPMELKQQGVTE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
+RLQLLVNV+G+FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPKRQ+T
Sbjct: 841 ERLQLLVNVSGSFRPGVLTALLGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKRQDT 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FAR+SGYCEQ DIHSP LT++ESLLFSAWLRLPS+++LETQRAFV+EVMELVELT LSGA
Sbjct: 901 FARVSGYCEQTDIHSPCLTIMESLLFSAWLRLPSDVDLETQRAFVDEVMELVELTPLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELL MKRGGELIYAGPLG KS ELIKYFEAVEGV KI+ GYN
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLLMKRGGELIYAGPLGPKSRELIKYFEAVEGVQKIKAGYN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PAAWMLEVTS VEESRLGVDFAE+YRRS LFQRN +LVE+LS+P +SK+L+F TKYSQS
Sbjct: 1081 PAAWMLEVTSAVEESRLGVDFAEVYRRSTLFQRNLDLVETLSRPISNSKELSFPTKYSQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
NQFLACL KQNLSYWRNPQYTAV+FFYTV+ISLMLG+ICWKFGAKRE QQDLFNAMGS
Sbjct: 1141 SFNQFLACLWKQNLSYWRNPQYTAVKFFYTVIISLMLGTICWKFGAKRETQQDLFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
+Y AVLFIGITNA+AVQPVVS+ER+VSYRERAAG+YSALPFAFAQV IEFPYVF Q +IY
Sbjct: 1201 LYAAVLFIGITNATAVQPVVSIERFVSYRERAAGLYSALPFAFAQVAIEFPYVFAQTVIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
CSIFYSMA+F+WT +KFI Y FFMYFT+LYFTFYGMMTTAITPNHNV AIIAAP YMLWN
Sbjct: 1261 CSIFYSMAAFDWTILKFIWYXFFMYFTLLYFTFYGMMTTAITPNHNVGAIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI HKRIPI+WRWYYWANP+AWSLYGLQ SQ+GDD+KLVKLSDG SV + +LK
Sbjct: 1321 LFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLQVSQYGDDNKLVKLSDGINSVAIHDVLK 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
VFGFRHDFL +A MV F FA IFA+AIK+F FQ+R
Sbjct: 1381 HVFGFRHDFLGVAAIMVFGFCLFFATIFAFAIKSFNFQRR 1420
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|280967727|gb|ACZ98533.1| putative ABC transporter [Malus x domestica] | Back alignment and taxonomy information |
|---|
Score = 2413 bits (6253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1170/1427 (81%), Positives = 1289/1427 (90%), Gaps = 8/1427 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAENVF+R+ SFR+E +DEEALRWAALERLPTYAR RRGIF+NVVGD E+DVSEL
Sbjct: 1 MWNSAENVFARSGSFREEGDDEEALRWAALERLPTYARVRRGIFRNVVGDTMEIDVSELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
+EQ+L+LDRLV++ +DDPE+FFDRMR+R +AV L PKIEVRFQ L VE+FVH+GSRAL
Sbjct: 61 AKEQKLLLDRLVSSADDDPEQFFDRMRRRFDAVALNFPKIEVRFQKLKVEAFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNF+FNM EAL RQLRIYRG RSKLTILD++SGI+RPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFVFNMAEALFRQLRIYRGQRSKLTILDNISGIVRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG +TYNGHG EFVP RTSAYVSQQDW VAEMTVRETL+FAG+CQGVG
Sbjct: 181 LAGRLGTGLQMSGNVTYNGHGLSEFVPQRTSAYVSQQDWHVAEMTVRETLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
+KYDM+ ELARREK AGI PDEDLDIFMKS ALGG++TSLVVEYIMKILGLD CADTLVG
Sbjct: 241 TKYDMLVELARREKCAGIIPDEDLDIFMKSLALGGKETSLVVEYIMKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS GLDSSTTYQIIKYL+HSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISTGLDSSTTYQIIKYLRHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQPAPE YELFDDVILL EGQIVYQGPR + LDFF+ MGF CP RKNVADFLQEV
Sbjct: 361 VISLLQPAPETYELFDDVILLCEGQIVYQGPRETALDFFSYMGFRCPLRKNVADFLQEVI 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWSNP LPYRY+ P KF +A+ + GK LSEEL VPFD+R+NHPAAL+TS Y
Sbjct: 421 SKKDQEQYWSNPDLPYRYVPPAKFVDAYRLFQAGKTLSEELDVPFDKRYNHPAALATSLY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKTS+NWQLLLMKRN+FIY+FKFIQLL VA++TM+VFFR+T+HH TIDDGGLY
Sbjct: 481 GVKRCELLKTSYNWQLLLMKRNAFIYIFKFIQLLFVAMVTMSVFFRSTLHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGF EVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS+P S IESG
Sbjct: 541 LGALYFSMVIILFNGFMEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSVPNSFIESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
FWVA+TYYVIG+DP++ RF Q L+YF LHQMSI LFR++GSLGRNMIVANTFGSFAMLV
Sbjct: 601 FWVAITYYVIGFDPSITRFCGQFLIYFLLHQMSIALFRLMGSLGRNMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
VMALGG+IIS+D IPKWWIWGFW SPLMYAQNAASVNEFLGH WDK+ GN LGEA+L
Sbjct: 661 VMALGGYIISKDRIPKWWIWGFWFSPLMYAQNAASVNEFLGHKWDKRIGNETIPLGEALL 720
Query: 721 RQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRK 780
R RSLFP+SYW+WIG GA+LGYT+LFN LFTFFL+YLNPLGK+QAVV+K+ELQER+RRRK
Sbjct: 721 RARSLFPQSYWFWIGAGALLGYTILFNMLFTFFLAYLNPLGKRQAVVTKEELQERERRRK 780
Query: 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPV--------EL 832
GE VVIELR+YLQ S SLN KYFKQ+GMVLPFQ LSM+F NINY+VDVP+ EL
Sbjct: 781 GETVVIELRQYLQHSESLNAKYFKQRGMVLPFQQLSMSFSNINYYVDVPLFLIQVRLQEL 840
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
KQ+G+ E++LQLL NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEG I+ISG
Sbjct: 841 KQQGIQEEKLQLLSNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGSIHISG 900
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
YPKRQETFARISGYCEQ+DIHSP LTVLESLLFS WLRLPS++ELE QRAFVEEVMELVE
Sbjct: 901 YPKRQETFARISGYCEQSDIHSPCLTVLESLLFSVWLRLPSDVELEIQRAFVEEVMELVE 960
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LT LSGAL+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR+AAIVMRTVR
Sbjct: 961 LTPLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARSAAIVMRTVR 1020
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVP 1072
NIVNTGRTIVCTIHQPSIDIFESFDELLF+KRGGELIYAGPLG KSCELIKYFEAVEGV
Sbjct: 1021 NIVNTGRTIVCTIHQPSIDIFESFDELLFLKRGGELIYAGPLGPKSCELIKYFEAVEGVE 1080
Query: 1073 KIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNF 1132
KIRPGYNPA WML+VTS VEESRLGVDFAE+YR SNLF+ N+ELVE LSKPS +SK+LNF
Sbjct: 1081 KIRPGYNPATWMLDVTSTVEESRLGVDFAEVYRSSNLFRHNKELVEILSKPSANSKELNF 1140
Query: 1133 STKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQD 1192
TKYSQSF QFL CL KQNLSYWRNPQYTAVRFFYTV+ISLMLG+ICW+FGAKR+ QQD
Sbjct: 1141 PTKYSQSFVEQFLTCLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGAKRDTQQD 1200
Query: 1193 LFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYV 1252
L NAMGSMY A+LF GITNA+AVQPVVSVER+VSYRERAAGMYSALPFAFAQVVIE PYV
Sbjct: 1201 LLNAMGSMYAAILFSGITNATAVQPVVSVERFVSYRERAAGMYSALPFAFAQVVIELPYV 1260
Query: 1253 FGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAA 1312
F QA+ YC+IFYS ASFEWTA+KF+ YIFFMYFTMLYFTFYGMMTTA+TPNHNVAA+IAA
Sbjct: 1261 FAQAIFYCTIFYSTASFEWTALKFLWYIFFMYFTMLYFTFYGMMTTAVTPNHNVAAVIAA 1320
Query: 1313 PCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSV 1372
P YMLWNLFSGFMI HKRIPI+WRWYYWANP+AWSLYGL SQ+G+DD L+ L+DG +
Sbjct: 1321 PFYMLWNLFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLFVSQYGEDDSLLTLADGIHKM 1380
Query: 1373 PVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
PV+ LLK FG++HDFL +AG MVV F FA IFA+AIK+F FQ+R
Sbjct: 1381 PVRQLLKVGFGYKHDFLGVAGIMVVGFCVFFAFIFAFAIKSFNFQRR 1427
|
Source: Malus x domestica Species: Malus x domestica Genus: Malus Family: Rosaceae Order: Rosales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445364|ref|XP_002284885.1| PREDICTED: ABC transporter G family member 32 [Vitis vinifera] gi|297738886|emb|CBI28131.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2412 bits (6252), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1180/1421 (83%), Positives = 1298/1421 (91%), Gaps = 2/1421 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNS ENVF+R+ SFR++ +DEEALRWAALERLPTY R RRGIF N+VGD KEVD++EL
Sbjct: 1 MWNSVENVFARSESFREDGDDEEALRWAALERLPTYDRVRRGIFTNIVGDKKEVDLNELE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
++E+++VLDRLVN++E+D ERFF R+R+R +AVDLE P+IEVRFQ+L V+SFVH+GSRAL
Sbjct: 61 LEERKVVLDRLVNSIEEDAERFFGRIRRRFDAVDLEFPEIEVRFQHLVVDSFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFIFNM+EALLR+LRIY+G + KLTILDD+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIFNMSEALLRKLRIYKGMQKKLTILDDISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG L+VSG+ITYNGH EFVP RTSAYVSQ DW VAEMTVRETL+F+G+CQGVG
Sbjct: 181 LAGRLGSDLKVSGRITYNGHNLNEFVPQRTSAYVSQYDWHVAEMTVRETLEFSGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK AGI PDEDLDIF+K+ ALGGQ+TSLVVEYI+KILGLD CADTLVG
Sbjct: 241 FKYDMLLELARREKAAGIIPDEDLDIFIKALALGGQETSLVVEYILKILGLDICADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELLVGPA+VLFMDEIS GLDSSTTYQIIKYL+HST AL GTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLVGPAKVLFMDEISTGLDSSTTYQIIKYLRHSTCALGGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDV+LL EGQIVYQGPR + LDFFA MGFSCP+RKNVADFLQEV
Sbjct: 361 IVSLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFAYMGFSCPERKNVADFLQEVV 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRYI KFAEAF SY G+NL EEL VPFDRR+NHPAALSTS Y
Sbjct: 421 SKKDQEQYWSVLDRPYRYIPVAKFAEAFRSYRAGRNLYEELEVPFDRRYNHPAALSTSSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KRSELLKTSF WQ LLMKRNSFIYVFKFIQLL VALITMTVFFRTTMHH T+DDGGLY
Sbjct: 481 GVKRSELLKTSFYWQKLLMKRNSFIYVFKFIQLLFVALITMTVFFRTTMHHHTVDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGA+YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYP WVYT+PSW LSIPTSLIESG
Sbjct: 541 LGAMYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPCWVYTLPSWVLSIPTSLIESG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
FWVAVTYYV+GYDP + RF +Q L++FFLHQMSI LFRV+GSLGRNMIVANTFGSFAMLV
Sbjct: 601 FWVAVTYYVVGYDPAITRFFQQFLIFFFLHQMSIALFRVMGSLGRNMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRDSIP WW+WGFW SPLMYAQNAASVNEFLGHSWDK+ N +NFSLGE +
Sbjct: 661 VMALGGYIISRDSIPSWWVWGFWFSPLMYAQNAASVNEFLGHSWDKRPRNDTNFSLGEEV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
LR RSLFPESYWYWIGVGA+ GYT+LFN LFT FL+YLNPLGK+QAVVSK+EL+++D RR
Sbjct: 721 LRARSLFPESYWYWIGVGALFGYTVLFNILFTVFLTYLNPLGKRQAVVSKEELKDKDMRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFK-QKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
GE VVIELR+YLQ S S+ K FK QKGMVLPFQPLSM F NINYFVDVP+ELKQ+G++
Sbjct: 781 NGETVVIELRQYLQHSDSVAEKKFKQQKGMVLPFQPLSMCFKNINYFVDVPLELKQQGIV 840
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG I+ISGYPK+QE
Sbjct: 841 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSIHISGYPKKQE 900
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFARISGYCEQ+DIHSP LTVLESLLFSAWLRLPS+++LETQRAFVEEVMELVELT LSG
Sbjct: 901 TFARISGYCEQSDIHSPCLTVLESLLFSAWLRLPSDVDLETQRAFVEEVMELVELTQLSG 960
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
AL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG
Sbjct: 961 ALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1020
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG LG KSCELI++FEAVEGVPKIRPGY
Sbjct: 1021 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGRLGPKSCELIQFFEAVEGVPKIRPGY 1080
Query: 1079 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQ 1138
NPAAWMLEV S EE+RLGVDFA++YRRSNLFQRN+ +VE LSKPS SK+LNF TKYSQ
Sbjct: 1081 NPAAWMLEVASSAEETRLGVDFADVYRRSNLFQRNKLIVERLSKPSSDSKELNFPTKYSQ 1140
Query: 1139 SFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMG 1198
SF +QFLACL KQNLSYWRNPQYTAVRFFYTV+ISLM G+ICW FG+KRE QQD+FNAMG
Sbjct: 1141 SFLDQFLACLWKQNLSYWRNPQYTAVRFFYTVIISLMFGTICWGFGSKRERQQDIFNAMG 1200
Query: 1199 SMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALI 1258
SMY AVLFIGITNA+AVQPVVSVER+VSYRERAAG+YSALPFAFAQV IEFPYVF Q LI
Sbjct: 1201 SMYAAVLFIGITNATAVQPVVSVERFVSYRERAAGLYSALPFAFAQVAIEFPYVFAQTLI 1260
Query: 1259 YCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLW 1318
Y IFYS+ASFEWTA+KF YIFFMYFT+LYFTF+GMMTTA+TPNHNVAAIIAAP YMLW
Sbjct: 1261 YSVIFYSLASFEWTALKFTWYIFFMYFTLLYFTFFGMMTTAVTPNHNVAAIIAAPFYMLW 1320
Query: 1319 NLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLL 1378
NLFSGFMI HK IPI+WRWYYWANP+AWSLYGL TSQ+GD+D LVKLSDG +VP+ LL
Sbjct: 1321 NLFSGFMIPHKWIPIWWRWYYWANPVAWSLYGLLTSQYGDNDNLVKLSDGINTVPINRLL 1380
Query: 1379 KDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
++VFGFRHDFLVI+G MVV+F +FA+IFAYAIK+F FQKR
Sbjct: 1381 REVFGFRHDFLVISGFMVVSFCLMFAVIFAYAIKSFNFQKR 1421
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563075|ref|XP_003549791.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2390 bits (6195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1162/1420 (81%), Positives = 1285/1420 (90%), Gaps = 3/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+SSFR+E EDEEALRWAALERLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L+RLV+ V++DPERFF RMR R +AV L PKIEVRFQ+LTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV V+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ E+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+ELKQ+G++E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLELKQQGIVE 839
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++
Sbjct: 840 DKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDS 899
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELVELT LSGA
Sbjct: 900 FARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELVELTPLSGA 959
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 960 LVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFEA+EGVPKIR GYN
Sbjct: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGVPKIRSGYN 1079
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PA WMLE TS VEE+RLGVDFAEIYR+S+L+Q N+ELVE LSKPS +SK+L+F TKY +S
Sbjct: 1080 PATWMLEATSSVEENRLGVDFAEIYRKSSLYQYNQELVERLSKPSGNSKELHFPTKYCRS 1139
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
QFL CL KQNL YWRNPQYTAVRFFYTV+ISLMLGSICW+FGAKRE QQDLFNAMGS
Sbjct: 1140 SFEQFLTCLWKQNLCYWRNPQYTAVRFFYTVIISLMLGSICWRFGAKRETQQDLFNAMGS 1199
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY A+LFIGITN +AVQPVVSVER+VSYRERAAGMYSAL FAFAQVVIEFPYVF QA+IY
Sbjct: 1200 MYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAIIY 1259
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
SIFYSMASF WT +FI Y+FFMYFTMLYFTFYGMMTTA+TPNHNVAAIIAAP YMLWN
Sbjct: 1260 SSIFYSMASFLWTFDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWN 1319
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI HKRIPI+WRWYYWANP+AWSLYGL TSQ+G D LVKLSDG S+ ++ +LK
Sbjct: 1320 LFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLLTSQYGGDTHLVKLSDGN-SMTIREVLK 1378
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
VFG+RHDFL + MV F F +IF++AIK+F FQ+R
Sbjct: 1379 HVFGYRHDFLCVTAVMVAGFCIFFGVIFSFAIKSFNFQRR 1418
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511619|ref|XP_003524521.1| PREDICTED: ABC transporter G family member 32-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2375 bits (6156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1165/1420 (82%), Positives = 1285/1420 (90%), Gaps = 3/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+ SFR+E EDEEALRWAAL+RLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSPSFREEGEDEEALRWAALQRLPTYKRARRGIFKNVIGDMKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L RLV+ V++DPERFF RMR R +AV LE PKIEVRFQNLTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLQRLVDCVDNDPERFFQRMRSRFDAVALEFPKIEVRFQNLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLRIYR RSKLTIL D+SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRIYRRKRSKLTILADISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQDW VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGDITYNGHSLKEFVPQRTSAYVSQQDWHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALD TT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDATT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSILDRPYRYVPVGKFAEAFSLYREGRILSEKLNIPFDRRYNHPAALATLSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAV+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVAVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WW+WGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWVWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ ESYWYWIG+GAM+GYT+LFN LFT FL+ LNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAESYWYWIGLGAMVGYTILFNILFTIFLANLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPL+MAF NINY+VDVP+ELKQ+G++E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLAMAFSNINYYVDVPLELKQQGIVE 839
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YISGYPKRQ++
Sbjct: 840 DKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYISGYPKRQDS 899
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++LETQ+AFVEEVMELVELT LSGA
Sbjct: 900 FARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDLETQKAFVEEVMELVELTPLSGA 959
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 960 LVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFEA+EGVPKIR GYN
Sbjct: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSCELISYFEAIEGVPKIRSGYN 1079
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PA WMLE TS VEE+RLGVDFAEIYR+S+L+Q N ELVE LSKPS +SK+L+F TKY +S
Sbjct: 1080 PATWMLEATSSVEENRLGVDFAEIYRKSSLYQYNLELVERLSKPSGNSKELHFPTKYCRS 1139
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
QFL CL KQNL YWRNPQYTAVRFFYTV+ISLMLGSICW+FGAKRE QQDLFNAMGS
Sbjct: 1140 SFEQFLTCLWKQNLCYWRNPQYTAVRFFYTVIISLMLGSICWRFGAKRETQQDLFNAMGS 1199
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY A+LFIGITN +AVQPVVSVER+VSYRERAAGMYSAL FAFAQVVIEFPYVF QA+IY
Sbjct: 1200 MYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPYVFAQAIIY 1259
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
SIFYSMASF WT +FI Y+FFMYFTMLYFTFYGMMTTA+TPNHNVAAIIAAP YMLWN
Sbjct: 1260 SSIFYSMASFVWTFDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIAAPFYMLWN 1319
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI HKRIPI+WRWYYWANP+AWSLYGL TSQ+G D LVKLS+G S+ ++ +LK
Sbjct: 1320 LFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLLTSQYGGDTHLVKLSNGN-SMTIREVLK 1378
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
VFG+RHDFL + MV F FA+IFA+AIK+F FQ+R
Sbjct: 1379 HVFGYRHDFLCVTAVMVAGFCIFFAIIFAFAIKSFNFQRR 1418
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356563077|ref|XP_003549792.1| PREDICTED: ABC transporter G family member 32-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2370 bits (6143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1162/1428 (81%), Positives = 1285/1428 (89%), Gaps = 11/1428 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN F+R+SSFR+E EDEEALRWAALERLPTY RARRGIFKNV+GD+KE+DV +L
Sbjct: 1 MWNSAENAFARSSSFREETEDEEALRWAALERLPTYKRARRGIFKNVIGDIKEIDVRDLQ 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
QEQRL+L+RLV+ V++DPERFF RMR R +AV L PKIEVRFQ+LTVE++VH+GSRAL
Sbjct: 61 AQEQRLLLERLVDCVDNDPERFFQRMRSRFDAVGLHFPKIEVRFQDLTVETYVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NMTEALLRQLR+YR RSKLTIL D+SGII+PSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFICNMTEALLRQLRMYRRKRSKLTILADISGIIKPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG LQ+SG ITYNGH KEFVP RTSAYVSQQD VAEMTVRETL FAG+CQGVG
Sbjct: 181 LAGRLGPGLQMSGNITYNGHSLKEFVPQRTSAYVSQQDRHVAEMTVRETLQFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K+DM+ ELARREK AGIKPDEDLD+FMKS ALGGQ+T+LVVEYIMKILGLD C DTLVG
Sbjct: 241 FKFDMLLELARREKNAGIKPDEDLDLFMKSLALGGQETNLVVEYIMKILGLDICGDTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEMLKGISGGQKKRLTTGELL+GPARVLFMDEIS GLDSSTTYQII+YLKHSTRALDGTT
Sbjct: 301 DEMLKGISGGQKKRLTTGELLIGPARVLFMDEISTGLDSSTTYQIIRYLKHSTRALDGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++SLLQPAPE YELFDDVILL EGQIVYQGPR + +DFF MGFSCP+RKNVADFLQEVT
Sbjct: 361 IVSLLQPAPETYELFDDVILLCEGQIVYQGPREAAVDFFKQMGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQEQYWS P PYRY+ GKFAEAF Y G+ LSE+L +PFDRR+NHPAAL+T Y
Sbjct: 421 SKKDQEQYWSVPDRPYRYVPVGKFAEAFSLYREGRILSEQLNLPFDRRYNHPAALATVSY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G KR ELLKT++ WQ LLMKRNSFIYVFKF+QLL+VALITM+VFFRTTMHH TIDDGGLY
Sbjct: 481 GAKRLELLKTNYQWQKLLMKRNSFIYVFKFVQLLLVALITMSVFFRTTMHHNTIDDGGLY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTSLIE+G
Sbjct: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWAYTLPSWFLSIPTSLIEAG 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WV V+YY GYDP RF RQ LL+FFLHQMSIGLFR+IGSLGRNMIV+NTFGSFAMLV
Sbjct: 601 CWVTVSYYASGYDPAFTRFLRQFLLFFFLHQMSIGLFRLIGSLGRNMIVSNTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VMALGG+IISRD IP WWIWGFW+SPLMYAQN+ASVNEFLGHSWDKKAGN + +SLGEA+
Sbjct: 661 VMALGGYIISRDRIPVWWIWGFWISPLMYAQNSASVNEFLGHSWDKKAGNQTTYSLGEAV 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSL+ E+YWYWIG+GAM+GYT+LFN LFT FL+YLNPLG+QQAVVSK ELQER++RR
Sbjct: 721 LKERSLYAENYWYWIGLGAMVGYTILFNILFTIFLAYLNPLGRQQAVVSKDELQEREKRR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPV--------E 831
KGE+VVIELREYLQRS+S +GK+FKQ+GMVLPFQPLSMAF NINY+VDVP+ E
Sbjct: 781 KGESVVIELREYLQRSAS-SGKHFKQRGMVLPFQPLSMAFSNINYYVDVPLYFIQLLLQE 839
Query: 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891
LKQ+G++ED+LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG+IEG +YIS
Sbjct: 840 LKQQGIVEDKLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGVIEGSVYIS 899
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
GYPKRQ++FARISGYCEQ D+HSP LTV ESLLFSAWLRL S+++ ETQ+AFVEEVMELV
Sbjct: 900 GYPKRQDSFARISGYCEQTDVHSPCLTVWESLLFSAWLRLSSDVDFETQKAFVEEVMELV 959
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
ELT LSGAL+GLPGI+GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV
Sbjct: 960 ELTPLSGALVGLPGIDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1019
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGV 1071
RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KS ELI YFEA+EGV
Sbjct: 1020 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPKSSELISYFEAIEGV 1079
Query: 1072 PKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLN 1131
PKIR GYNPA WMLE TS VEE+RLGVDFAEIYR+S+L+Q N+ELVE LSKPS +SK+L+
Sbjct: 1080 PKIRSGYNPATWMLEATSSVEENRLGVDFAEIYRKSSLYQYNQELVERLSKPSGNSKELH 1139
Query: 1132 FSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQ 1191
F TKY +S QFL CL KQNL YWRNPQYTAVRFFYTV+ISLMLGSICW+FGAKRE QQ
Sbjct: 1140 FPTKYCRSSFEQFLTCLWKQNLCYWRNPQYTAVRFFYTVIISLMLGSICWRFGAKRETQQ 1199
Query: 1192 DLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPY 1251
DLFNAMGSMY A+LFIGITN +AVQPVVSVER+VSYRERAAGMYSAL FAFAQVVIEFPY
Sbjct: 1200 DLFNAMGSMYSAILFIGITNGTAVQPVVSVERFVSYRERAAGMYSALSFAFAQVVIEFPY 1259
Query: 1252 VFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIA 1311
VF QA+IY SIFYSMASF WT +FI Y+FFMYFTMLYFTFYGMMTTA+TPNHNVAAIIA
Sbjct: 1260 VFAQAIIYSSIFYSMASFLWTFDRFIWYLFFMYFTMLYFTFYGMMTTAVTPNHNVAAIIA 1319
Query: 1312 APCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGS 1371
AP YMLWNLFSGFMI HKRIPI+WRWYYWANP+AWSLYGL TSQ+G D LVKLSDG S
Sbjct: 1320 APFYMLWNLFSGFMIPHKRIPIWWRWYYWANPVAWSLYGLLTSQYGGDTHLVKLSDGN-S 1378
Query: 1372 VPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+ ++ +LK VFG+RHDFL + MV F F +IF++AIK+F FQ+R
Sbjct: 1379 MTIREVLKHVFGYRHDFLCVTAVMVAGFCIFFGVIFSFAIKSFNFQRR 1426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15225814|ref|NP_180259.1| ABC transporter G family member 32 [Arabidopsis thaliana] gi|75318727|sp|O81016.1|AB32G_ARATH RecName: Full=ABC transporter G family member 32; Short=ABC transporter ABCG.32; Short=AtABCG32; AltName: Full=Probable pleiotropic drug resistance protein 4 gi|3426037|gb|AAC32236.1| putative ABC transporter [Arabidopsis thaliana] gi|28144347|tpg|DAA00872.1| TPA_exp: PDR4 ABC transporter [Arabidopsis thaliana] gi|330252812|gb|AEC07906.1| ABC transporter G family member 32 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 2366 bits (6132), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1123/1420 (79%), Positives = 1281/1420 (90%), Gaps = 1/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG +LQ SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PAAWML+VT+ EE RLGVDFAEIYR SNL QRN+EL+E LSKPS +K++ F T+YSQS
Sbjct: 1081 PAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
+QF+ACL KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR+ QQ LFNAMGS
Sbjct: 1141 LYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY AVLFIGITNA+A QPVVS+ER+VSYRERAAGMYSALPFAFAQV IEFPYV Q+ IY
Sbjct: 1201 MYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
+IFY+MA+FEW+AVKF+ Y+FFMYF+++YFTFYGMMTTAITPNHNVA+IIAAP YMLWN
Sbjct: 1261 STIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI +KRIP++WRWYYWANP+AW+LYGL SQ+GDD++ VKLSDG V VK LL+
Sbjct: 1321 LFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLE 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
DV G++HDFL ++ MVVAF F+++FA+AIKAF FQ+R
Sbjct: 1381 DVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822271|ref|XP_002879018.1| ATPDR4/PDR4 [Arabidopsis lyrata subsp. lyrata] gi|297324857|gb|EFH55277.1| ATPDR4/PDR4 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 2365 bits (6129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 1125/1420 (79%), Positives = 1281/1420 (90%), Gaps = 1/1420 (0%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DP++FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPQQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180
PTIPNFI NM E LLR + + G RSKLTILD +SGIIRPSRLTLLLGPPSSGKTTLLLA
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRSKLTILDGISGIIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 LAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
LAGRLG +LQ SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
K DM+ ELARREK+AGI PDEDLDIFMKS ALGGQ+TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKCDMLLELARREKLAGIVPDEDLDIFMKSLALGGQETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GFSCP+RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFSCPERKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F+WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFSWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKSAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIG+ A+LGYT+LFN LFT FL++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGIAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELI YFE++EGV KIRPG+N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELINYFESIEGVQKIRPGHN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQS 1139
PAAWML+VTS EE RLGVDFAEIYR SNL QRN+EL+E LSKPS +K++ F T+YSQS
Sbjct: 1081 PAAWMLDVTSSTEEHRLGVDFAEIYRNSNLCQRNKELIELLSKPSSIAKEIEFPTRYSQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
+QF+ACL KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR+ QQ LFNAMGS
Sbjct: 1141 LYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY AVLFIGITNA+A QPVVS+ER+VSYRERAAGMYSALPFAFAQV IEFPYV Q+ IY
Sbjct: 1201 MYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWN 1319
SIFY+MA+FEW+ VKF+ Y+FFMYF+++YFTFYGMMTTAITPNHNVA+IIAAP YMLWN
Sbjct: 1261 SSIFYAMAAFEWSVVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI +KRIP++WRWYYWANP+AW+LYGL SQ+GDD++ VKLSDG V VK LL+
Sbjct: 1321 LFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERPVKLSDGIHQVMVKQLLE 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
DV G++HDFL ++ MVVAF F+++FA+AIKAF FQ+R
Sbjct: 1381 DVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1419 | ||||||
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 1.0 | 0.999 | 0.759 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.986 | 0.983 | 0.563 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.988 | 0.964 | 0.548 | 0.0 | |
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.988 | 0.964 | 0.550 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.988 | 0.972 | 0.530 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.951 | 0.953 | 0.542 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.995 | 0.961 | 0.521 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.978 | 0.957 | 0.471 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.985 | 0.989 | 0.469 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.534 | 0.532 | 0.452 | 0.0 |
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 5730 (2022.1 bits), Expect = 0., P = 0.
Identities = 1079/1420 (75%), Positives = 1228/1420 (86%)
Query: 1 MWNSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELA 60
MWNSAEN FSR++SF+DE+EDEE LRWAAL+RLPTY+R RRGIF+++VG+ KE+ + L
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPKEIQIGNLE 60
Query: 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRAL 120
EQRL+LDRLVN+VE+DPE+FF R+RKR +AVDL+ PKIEVRFQNL VESFVH+GSRAL
Sbjct: 61 ASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVGSRAL 120
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXX 180
PTIPNFI NM E LLR + + G R+KLTILD +SG+IRPSRLTLLLGPPSSGK
Sbjct: 121 PTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTTLLLA 180
Query: 181 XXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
Q SGKITYNG+ KE + PRTSAYVSQQDW VAEMTVR+TL+FAG+CQGVG
Sbjct: 181 LAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRCQGVG 240
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
KYDM+ ELARREK+AGI PDEDLDIFMKS ALGG +TSLVVEY+MKILGLDTCADTLVG
Sbjct: 241 FKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCADTLVG 300
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
DEM+KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT+QII Y++HST AL+GTT
Sbjct: 301 DEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHALEGTT 360
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
VISLLQP+PE YELFDDVIL+SEGQI+YQGPR VLDFF+S+GF+CP RKNVADFLQEVT
Sbjct: 361 VISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFLQEVT 420
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ+QYWS P+ PYRY+ PGKFAEAF SY TGK L+++L VPFD+RFNH AALSTS+Y
Sbjct: 421 SKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALSTSQY 480
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
G K+SELLK +F WQ LMK+N+FIYVFKF+QLL+VALITMTVF RTTMHH TIDDG +Y
Sbjct: 481 GVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDDGNIY 540
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
LG+LYFSMVIILFNGFTEV MLVAKLPVLYKHRDLHFYPSW YT+PSW LSIPTS+IES
Sbjct: 541 LGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSIIESA 600
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
WVAVTYY IGYDP RF +Q LLYF LHQMS+GLFRV+GSLGR+MIVANTFGSFAMLV
Sbjct: 601 TWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSFAMLV 660
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGN-SNFSLGEAI 719
VM LGGFIISRDSIP WWIWG+W+SPLMYAQNAASVNEFLGH+W K AGN ++ SLG A+
Sbjct: 661 VMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNWQKTAGNHTSDSLGLAL 720
Query: 720 LRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRR 779
L++RSLF +YWYWIGV A+LGY ++LNP GK QAVVS++EL ER+++R
Sbjct: 721 LKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELDEREKKR 780
Query: 780 KGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLE 839
KG+ V+ELREYLQ S S++GKYFK +GMVLPFQPLS++F NINY+VDVP+ LK++G+LE
Sbjct: 781 KGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGLKEQGILE 840
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
DRLQLLVN+TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG IEGD+YISG+PKRQET
Sbjct: 841 DRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISGFPKRQET 900
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
FARISGYCEQND+HSP LTV+ESLLFSA LRLP++I+ ETQRAFV EVMELVELTSLSGA
Sbjct: 901 FARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVELTSLSGA 960
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L+GLPG++GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR
Sbjct: 961 LVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1020
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYN 1079
TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG KSCELIKYFE++EGV KI+PG+N
Sbjct: 1021 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQKIKPGHN 1080
Query: 1080 PAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQS 1139
PAAWML+VT+ EE RLGVDFAEIYR SNL QRN+EL+E F T+YSQS
Sbjct: 1081 PAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEFPTRYSQS 1140
Query: 1140 FANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGS 1199
+QF+ACL KQNLSYWRNPQYTAVRFFYTVVISLMLG+ICWKFG+KR+ QQ LFNAMGS
Sbjct: 1141 LYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQLFNAMGS 1200
Query: 1200 MYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIY 1259
MY AVLFIGITNA+A QPVVS+ER+VSYRERAAGMYSALPFAFAQV IEFPYV Q+ IY
Sbjct: 1201 MYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYVLAQSTIY 1260
Query: 1260 CSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCYMLWN 1319
+IFY+MA+FEW+AVKF+ AITPNHNVA+IIAAP YMLWN
Sbjct: 1261 STIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAAPFYMLWN 1320
Query: 1320 LFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLK 1379
LFSGFMI +KRIP++WRWYYWANP+AW+LYGL SQ+GDD++ VKLSDG V VK LL+
Sbjct: 1321 LFSGFMIPYKRIPLWWRWYYWANPVAWTLYGLLVSQYGDDERSVKLSDGIHQVMVKQLLE 1380
Query: 1380 DVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
DV G++HDFL ++ MVVAF F+++FA+AIKAF FQ+R
Sbjct: 1381 DVMGYKHDFLGVSAIMVVAFCVFFSLVFAFAIKAFNFQRR 1420
|
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| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4251 (1501.5 bits), Expect = 0., P = 0.
Identities = 802/1424 (56%), Positives = 1044/1424 (73%)
Query: 1 MW--NSAENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIF--KNVVGDVKEVDV 56
+W +S +FSR+S R+E +DEEALRWAALE+LPT+ R R+GI + G + E+D+
Sbjct: 19 VWKKDSGREIFSRSS--REE-DDEEALRWAALEKLPTFDRLRKGILTASHAGGPINEIDI 75
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
+L Q+ + +L+RL+ +D+ E+ +++KR + V ++LP IEVRF +L VE+ VH+G
Sbjct: 76 QKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVG 135
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
RALPT NFI N + L L + + K TIL+D+SGI++P R+ LLLGPPSSGK
Sbjct: 136 GRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTT 195
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
+ +G++TYNGHG EFVP RT+AY+ Q D + EMTVRET +A +
Sbjct: 196 LLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARF 255
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVGS+YDM+TELARREK A IKPD D+DIFMK+ + G+KT+++ +YI+KILGL+ CAD
Sbjct: 256 QGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCAD 315
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+ML+GISGGQKKR+TTGE+LVGP+R LFMDEIS GLDSSTTYQI+ L++
Sbjct: 316 TMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIF 375
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+GT +ISLLQPAPE + LFDD+IL++EG+I+Y+GPR V++FF +MGF CP RK VADFL
Sbjct: 376 NGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFL 435
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQ QYW+ PYR+I +FAEAF S+H G+ + +ELA+PFD+ +HPAAL+
Sbjct: 436 QEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALT 495
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
T KYG EL+KTSF+ + LLMKRNSF+Y FKF QLL++A +TMT+FFRT M KT D
Sbjct: 496 TKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVD 555
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
G LY GAL+F +++++FNG +E+SM +AKLPV YK RDL FYP+WVY++P W L IP S
Sbjct: 556 GSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISF 615
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
+E+ +TYYVIG+DPNV R +Q +L ++QM+ LF+++ +LGRNMIVANTFG+F
Sbjct: 616 MEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAF 675
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLG 716
AMLV ALGG ++SRD I KWWIWG+W+SP+MY QNA NEF GHSW + NS+ +LG
Sbjct: 676 AMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSSETLG 735
Query: 717 EAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERD 776
L+ R P +YWYWIG GA+LG+ ++LN LGK QAV++++ +
Sbjct: 736 VTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEPASDET 795
Query: 777 RRRKGENV-VIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
+ + V+E + N K++GMVLPF+P S+ F N+ Y VD+P E+ ++
Sbjct: 796 ELQSARSEGVVE--------AGAN----KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQ 843
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
G EDRL LL V GAFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG I+G+I ISGYPK
Sbjct: 844 GTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPK 903
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
Q+TFARISGYCEQ DIHSP +TV ESL++SAWLRLP E++ ++ F+EEVMELVELT
Sbjct: 904 NQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTP 963
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L AL+GLPG +GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V
Sbjct: 964 LRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1023
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
+TGRT+VCTIHQPSIDIFE+FDEL +KRGGE IY GPLG +S LI YFE+++G+ KI
Sbjct: 1024 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKIT 1083
Query: 1076 PGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTK 1135
GYNPA WMLEV++ +E+ LGVDFA++Y+ S L++RN+EL++ F T+
Sbjct: 1084 EGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQ 1143
Query: 1136 YSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFN 1195
YSQSF Q +A L KQ+ SYWRNP YTAVRF +T+ I+LM G++ W G K + +QDL N
Sbjct: 1144 YSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSN 1203
Query: 1196 AMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQ 1255
AMGSMY AVLF+G+ NA++VQPVV+VER V YRE+AAGMYSA+P+AFAQV IE PYV Q
Sbjct: 1204 AMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQ 1263
Query: 1256 ALIYCSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCY 1315
A++Y I Y+M FEWTAVKF A+TPNH++A+++++ Y
Sbjct: 1264 AIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFY 1323
Query: 1316 MLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVK 1375
+WNLFSGF+I +P++W WYYW P+AW+LYGL SQFGD + ++D SV K
Sbjct: 1324 GIWNLFSGFLIPRPSMPVWWEWYYWLCPVAWTLYGLIASQFGDITE--PMADSNMSV--K 1379
Query: 1376 HLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+++ +G+R FL + AM V F +FA+IFA IK+F FQKR
Sbjct: 1380 QFIREFYGYREGFLGVVAAMNVIFPLLFAVIFAIGIKSFNFQKR 1423
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| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4086 (1443.4 bits), Expect = 0., P = 0.
Identities = 779/1421 (54%), Positives = 1012/1421 (71%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVG----DVKEVDVSELAV 61
+ VF R+ R E ED+ LRWAA+ERLPT+ R R+G+ +++++D++ L
Sbjct: 45 DEVFGRSE--RRE-EDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEP 101
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALP 121
++++ +++ +++ VE+D E+F +R+R + V +E+PKIEVR++N++VE V SRALP
Sbjct: 102 KDKKHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALP 161
Query: 122 TIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXX 181
T+ N N E++L + R K+ IL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 162 TLFNVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQAL 221
Query: 182 XXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241
Q+SG+ITY GH F+EFVP +T AY+SQ D EMTVRE LDF+G+C GVGS
Sbjct: 222 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGS 281
Query: 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301
+Y +++EL+RREK GIKPD +D FMKS A+ GQ+TSLV +Y++KILGLD CAD L GD
Sbjct: 282 RYQLMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGD 341
Query: 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV 361
M +GISGGQKKRLTTGE+LVGPAR LFMDEIS GLDSSTT+QI K+++ D T +
Sbjct: 342 VMRRGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMI 401
Query: 362 ISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
ISLLQPAPE +ELFDD+ILLSEGQIVYQGPR +VL+FF GF CP+RK VADFLQEVTS
Sbjct: 402 ISLLQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTS 461
Query: 422 KKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
KKDQEQYW+ PY Y+S F+ F ++HTG+ L+ E VP+D+ H AAL T KYG
Sbjct: 462 KKDQEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYG 521
Query: 482 EKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541
EL K F+ + LLMKRNSF+YVFK +Q+ I++LITMTV+ RT MH T+ DG +
Sbjct: 522 ISNWELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFY 581
Query: 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGF 601
GA++FS++ ++FNG E++ V +LPV YK RD FYP W + +P+W L IP SLIESG
Sbjct: 582 GAMFFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGI 641
Query: 602 WVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV 661
W+ +TYY IG+ P+ RF RQLL YF ++QM++ LFR +G++GR +++N+ G+F +L+V
Sbjct: 642 WIGLTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIV 701
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEA 718
LGGFII++D I W W +++SP+MY Q A +NEFL W ++ + +GE
Sbjct: 702 FTLGGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEV 761
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRR 778
+L+ R F E YW+WI + A+LG+ YLNPLG +A V ++E +
Sbjct: 762 LLKSRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATV----VEEGKDK 817
Query: 779 RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVL 838
+KGEN E SSS G ++GMVLPFQPLS+AF N+NY+VD+P E+K +GV
Sbjct: 818 QKGENRGTEGSVVELNSSSNKGP---KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVE 874
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
DRLQLL +V GAFRPG+LTALVGVSGAGKTTLMDVLAGRKTGG IEG I ISGYPK Q
Sbjct: 875 GDRLQLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQT 934
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
TFAR+SGYCEQNDIHSP +TV ESL++SAWLRL ++I+++T+ FVEEVMELVEL L
Sbjct: 935 TFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRN 994
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+++GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+TG
Sbjct: 995 SIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1054
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
RT+VCTIHQPSIDIFESFDELL MKRGG++IYAG LG S +L++YFEAVEGVPKI GY
Sbjct: 1055 RTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGY 1114
Query: 1079 NPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQ 1138
NPA WML+VT+P ES++ +DFA+I+ S+L++RN+EL++ F TKY+Q
Sbjct: 1115 NPATWMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQ 1174
Query: 1139 SFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMG 1198
SF+ Q AC KQ SYWR+PQY A+RF TVVI ++ G I W+ G K EN+QDL N G
Sbjct: 1175 SFSTQTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFG 1234
Query: 1199 SMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALI 1258
+MY AVLF+G NA+ VQP +++ER V YRE+AAGMYSA+P+A +QV +E Y Q +
Sbjct: 1235 AMYAAVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGV 1294
Query: 1259 YCSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCYMLW 1318
Y I YSM WT KF+ A+TPN+ +A I + LW
Sbjct: 1295 YTLILYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLW 1354
Query: 1319 NLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLL 1378
NLFSGF+I +IPI+WRWYYWA P+AW+LYGL TSQ GD D +V +S G G + +K LL
Sbjct: 1355 NLFSGFLIPRPQIPIWWRWYYWATPVAWTLYGLITSQVGDKDSMVHIS-GIGDIDLKTLL 1413
Query: 1379 KDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
K+ FGF HDFL + + +A+ +F +FAY IK FQ+R
Sbjct: 1414 KEGFGFEHDFLPVVAVVHIAWILLFLFVFAYGIKFLNFQRR 1454
|
|
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4064 (1435.7 bits), Expect = 0., P = 0.
Identities = 784/1423 (55%), Positives = 1017/1423 (71%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVV--GDV--KEVDVSELAV 61
++VF R+ R E ED+ LRWAALERLPTY R R+G+ + G + ++VDV+ LA
Sbjct: 43 DDVFGRSD--RRE-EDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAP 99
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALP 121
+E++ +++ ++ VE+D E+F R+R+R + V +E+PKIEVR++NL+VE V SRALP
Sbjct: 100 KEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALP 159
Query: 122 TIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXX 181
T+ N N E++L + + K+ IL D+SGII+PSR+TLLLGPPSSGK
Sbjct: 160 TLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQAL 219
Query: 182 XXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241
Q+SG+ITY GH F+EFVP +T AY+SQ D EMTVRE+LDF+G+C GVG+
Sbjct: 220 AGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGT 279
Query: 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301
+Y ++TEL+RRE+ AGIKPD ++D FMKS A+ GQ+TSLV +Y++K+LGLD CADTLVGD
Sbjct: 280 RYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGD 339
Query: 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV 361
M +GISGGQ+KRLTTGE+LVGPA LFMDEIS GLDSSTT+QI K+++ D T V
Sbjct: 340 VMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMV 399
Query: 362 ISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
ISLLQPAPE +ELFDD+ILLSEGQIVYQG R +VL+FF MGF CP+RK +ADFLQEVTS
Sbjct: 400 ISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTS 459
Query: 422 KKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
KKDQEQYW+ PY Y+S F+ F+S+H G+ L+ E VP+D+ HPAAL T KYG
Sbjct: 460 KKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYG 519
Query: 482 EKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541
+L K F+ + LLMKRNSF+YVFK +Q+ I++LI MTV+FRT MH T+ DG +
Sbjct: 520 ISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFY 579
Query: 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGF 601
GAL+FS++ ++FNG E++ V +LPV +K RD FYP W + +P + L IP SLIES
Sbjct: 580 GALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVI 639
Query: 602 WVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV 661
W+A+TYY IG+ P+ RF RQLL YF ++QM++ LFR +G+LGR ++AN+ G+ A+LVV
Sbjct: 640 WIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVV 699
Query: 662 MALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFS---LGEA 718
LGGFIIS+D IP W W ++ SP+MY Q A +NEFL W ++ + +GE
Sbjct: 700 FVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEV 759
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDR- 777
+L+ R F E YW+WI +GA+LG+ YLNPLG +A +E +++ +
Sbjct: 760 LLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKG 819
Query: 778 RRKGEN-VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEG 836
G V+EL S+S +G +KGMVLPFQPLS+AF N+NY+VD+P E+K +G
Sbjct: 820 SHSGTGGSVVELT-----STSSHGP---KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQG 871
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
V DRLQLL +V GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG +EG I ISGYPK
Sbjct: 872 VEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPKN 931
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
Q TFAR+SGYCEQNDIHSP +TV ESL++SAWLRL ++I+ +T+ FVEEVMELVEL L
Sbjct: 932 QATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKPL 991
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+++GLPG++GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVRN V+
Sbjct: 992 RNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1051
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRP 1076
TGRT+VCTIHQPSIDIFESFDELL MKRGG++IYAG LG S +L++YFEA+EGVPKI+
Sbjct: 1052 TGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKD 1111
Query: 1077 GYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKY 1136
GYNPA WML+VT+P ES++ VDFA+I+ S++ +RN+EL++ F TKY
Sbjct: 1112 GYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTKY 1171
Query: 1137 SQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNA 1196
+Q F+ Q AC K S WR PQY A+RF TVVI ++ G + W+ G K E +QDL N
Sbjct: 1172 AQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNF 1231
Query: 1197 MGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQA 1256
G+MY AVLF+G TNA+ VQP V++ER V YRE+AAGMYSA+P+A +QV +E Y Q
Sbjct: 1232 FGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQT 1291
Query: 1257 LIYCSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCYM 1316
+Y I YSM ++WT VKF A+TPN+ +A I +
Sbjct: 1292 GVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFLS 1351
Query: 1317 LWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKH 1376
WNLFSGF+I +IPI+WRWYYWA+P+AW+LYG+ TSQ GD D +V ++ G G + +K
Sbjct: 1352 FWNLFSGFLIPRPQIPIWWRWYYWASPVAWTLYGIITSQVGDRDSIVHIT-GVGDMSLKT 1410
Query: 1377 LLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
LLK+ FGF +DFL + + +A+ IF FAY IK FQ+R
Sbjct: 1411 LLKNGFGFDYDFLPVVAVVHIAWILIFLFAFAYGIKFLNFQRR 1453
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3933 (1389.5 bits), Expect = 0., P = 0.
Identities = 756/1424 (53%), Positives = 993/1424 (69%)
Query: 6 ENVFSRTSSFRDEV-EDEEALRWAALERLPTYARARRGIFK-----NVVGDV---KEVDV 56
E++F+ +S V EDEEAL+WA++E+LPTY R R + +V G+ K VDV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
++L +E++ +D + E D ER ++R R + V ++LP +EVR+ +LTV++ + G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
R+LP++ N + NM EA L + I +++LTIL D+SGI++PSR+TLLLGPPSSGK
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
VSG++TYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +C
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVG++YD++ ELARREK AGI P+ D+D+FMK+ A G K+SL+ +Y +KILGLD C D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ T +ISLLQPAPE ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQEQYW +P PYRYI +FA +F +H G LS EL+VP+D+ +H AAL
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
KY K++ELLK+ ++ + +LMKRNSF YVFK +Q++I+A IT T++ RT MH + D
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
+Y+G+L F+M++ +FNG E++M + +LPV YK RDL F+P W YT+P++ L IP S+
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
ES W+ VTYY IGY P+ RF +Q L+ F + QM+ G+FR I S R M +ANT G
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSNFSL 715
+LVV GGF++ R IP WW W +W+SPL YA NA +VNE W +K +GNS L
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRWMNKMSGNSTTRL 750
Query: 716 GEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQER 775
G ++L +F + WYWIGVG +LG+ +YL+PLGK QA++ K+E E
Sbjct: 751 GTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEE-DEE 809
Query: 776 DRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQE 835
+ + G N E+ S++ K KGMVLPF PL+M+F ++ YFVD+P E++++
Sbjct: 810 AKGKAGSNKETEME-------SVSAK----KGMVLPFTPLAMSFDDVKYFVDMPAEMREQ 858
Query: 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895
GV E RLQLL VT AFRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ +SG+PK
Sbjct: 859 GVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFPK 918
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+QETFARISGYCEQ DIHSP +TV ESL+FSA+LRL E+ E + FV++VMELVEL
Sbjct: 919 KQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVD 978
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMR VRN V
Sbjct: 979 LRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTV 1038
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
+TGRT+VCTIHQPSIDIFE+FDELL MKRGG +IY+GPLG S ++++YFE+ GVPKI
Sbjct: 1039 DTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIP 1098
Query: 1076 PGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTK 1135
YNPA WMLE +S E +LGVDFAE+Y+ S L QRN+ LV+ F+T+
Sbjct: 1099 EKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQ 1158
Query: 1136 YSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFN 1195
+SQ+ QF +CL KQ +YWR+P Y VRF +T+ SLM+GS+ W+ G KR N QDL
Sbjct: 1159 FSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTM 1218
Query: 1196 AMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQ 1255
+G++Y AV+F+GI N S VQP+V+VER V YRE+AAGMYSA+P+A +QV E PYV Q
Sbjct: 1219 VIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLIQ 1278
Query: 1256 ALIYCSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCY 1315
Y I YSM FEW A KF+ ++TPN VA+I A+ Y
Sbjct: 1279 TTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAFY 1338
Query: 1316 MLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVK 1375
++NLFSGF I +IP +W WYYW P+AW++YGL TSQ+GD + + L G + VK
Sbjct: 1339 GIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALLGGAPGLTVK 1398
Query: 1376 HLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+KD +GF D++ ++V F FA IFA+ IK FQ R
Sbjct: 1399 QYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3917 (1383.9 bits), Expect = 0., P = 0.
Identities = 742/1367 (54%), Positives = 981/1367 (71%)
Query: 54 VDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFV 113
VDV++L V +++ +D + E+D E+F + R R + V ++LP +EVRF+ +T+E+
Sbjct: 66 VDVTKLGVDDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANC 125
Query: 114 HLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173
H+G RALPT+PN N+ E LR L +K+TIL D+SGII+PSR+TLLLGPPSSG
Sbjct: 126 HIGKRALPTLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSG 185
Query: 174 KXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233
K +V+G++TYNGHG +EFVP +TSAY+SQ D V MTV+ETLDF+
Sbjct: 186 KTTLLLALAGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFS 245
Query: 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT 293
+CQGVG++YD+++EL RREK AGI P+ ++D+FMKS A G K+SL+ +Y ++ILGLD
Sbjct: 246 ARCQGVGTRYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDI 305
Query: 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
C DT+VGDEM++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+
Sbjct: 306 CKDTVVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIV 365
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413
R D T ++SLLQPAPE +ELFDD+ILLSEGQIVYQGPR VL FF + GF CP RK A
Sbjct: 366 RFTDATVLMSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTA 425
Query: 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPA 473
DFLQEVTS+KDQEQYW++ PY YIS +F++ F ++H G NL ++L+VP+DR +HPA
Sbjct: 426 DFLQEVTSRKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPA 485
Query: 474 ALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKT 533
+L K+ +S+L K ++ +LLLMKRN+F Y+ K +Q++I+ALI TV+ RT M K
Sbjct: 486 SLVFKKHSVPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKN 545
Query: 534 IDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIP 593
DG +Y+GAL FSM++ +FNGF E+++++ +LPV YK RDL F+P W +++P++ L IP
Sbjct: 546 ESDGAVYIGALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIP 605
Query: 594 TSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTF 653
S+ ES WV +TYY+IG+ P + RF + LL+ F QM+ G+FR I + R+MI+ANT
Sbjct: 606 ISIFESVVWVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTG 665
Query: 654 GSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGNSN 712
G+ +L++ LGGFI+ R IPKWW W +WVSP+ Y +A +VNE L W ++ + +++
Sbjct: 666 GALVILLLFLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWINQPSSDNS 725
Query: 713 FSLGEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKEL 772
SLG A+L +F + WYWIGVG +LG+ ++LNPL KQQAVVSK+
Sbjct: 726 TSLGLAVLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENT 785
Query: 773 QERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVEL 832
+E +R G +S S++ K +GMVLPF PL+M+F N+NY+VD+P E+
Sbjct: 786 EE-NRAENGS-----------KSKSIDVK----RGMVLPFTPLTMSFDNVNYYVDMPKEM 829
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K++GV +D+LQLL VTG FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGDI ISG
Sbjct: 830 KEQGVSKDKLQLLKEVTGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 889
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+PKRQETFARISGYCEQNDIHSP +TV ESL++SA+LRLP E+ + FV+EVMELVE
Sbjct: 890 FPKRQETFARISGYCEQNDIHSPQVTVKESLIYSAFLRLPKEVTKYEKMRFVDEVMELVE 949
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L SL A++GLPGI GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVR
Sbjct: 950 LESLKDAVVGLPGITGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1009
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVP 1072
N V+TGRT+VCTIHQPSIDIFE+FDELL +KRGG++IYAGPLG S ++I+YF+A+ GVP
Sbjct: 1010 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGQVIYAGPLGQNSHKIIEYFQAIHGVP 1069
Query: 1073 KIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNF 1132
KI+ YNPA WMLEV+S E++L +DFAE Y+ S+L+Q+N+ LV+ F
Sbjct: 1070 KIKEKYNPATWMLEVSSMAAEAKLEIDFAEHYKTSSLYQQNKNLVKELSTPPQGASDLYF 1129
Query: 1133 STKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQD 1192
ST++SQS QF +CL KQ ++YWR P Y RFF+T+ ++MLGSI WK G KREN D
Sbjct: 1130 STRFSQSLLGQFKSCLWKQWITYWRTPDYNLARFFFTLAAAVMLGSIFWKVGTKRENAND 1189
Query: 1193 LFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYV 1252
L +G+MY AVLF+G+ N+S+VQP+++VER V YRERAA MYSALP+A AQVV E PYV
Sbjct: 1190 LTKVIGAMYAAVLFVGVNNSSSVQPLIAVERSVFYRERAAEMYSALPYALAQVVCEIPYV 1249
Query: 1253 FGQALIYCSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAA 1312
Q Y I Y+M FEWT KF A+TPN VAA+ A
Sbjct: 1250 LIQTTYYTLIIYAMMCFEWTLAKFFWFYFVSFMSFLYFTYYGMMTVALTPNQQVAAVFAG 1309
Query: 1313 PCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSV 1372
Y L+NLFSGF+I RIP +W WYYW P+AW++YGL SQ+GD + +K+
Sbjct: 1310 AFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGMANDP 1369
Query: 1373 PVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+K +++ +G+ DF++ ++V F FA +FA+ I+ FQ+R
Sbjct: 1370 TIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3884 (1372.3 bits), Expect = 0., P = 0.
Identities = 751/1439 (52%), Positives = 998/1439 (69%)
Query: 6 ENVFSRTSSFRDEV-EDEEALRWAALERLPTYARARRGIFKNVVGD--------VKEVDV 56
E++FS S V +DEEAL+WAA+E+LPTY+R R + VV D KEVDV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
++L ++++ +D + E D ER ++R R + V ++LP +EVR+++LT+++ + G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
+R+LPT+ N + NM E+ L + I +++LTIL D+SG+I+P R+TLLLGPPSSGK
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
QVSG ITYNG+ EFVP +TSAY+SQ D V MTV+ETLDF+ +C
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296
QGVG++YD++ ELARREK AGI P+ D+D+FMK+ A G K SLV +Y +KILGLD C D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T+VGD+M++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTT+QI+K L+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ T ++SLLQPAPE ++LFDD+IL+SEGQIVYQGPR ++L+FF S GF CP+RK ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 417 QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALS 476
QEVTSKKDQEQYW NP PY YI +FA + S+H G +S ELAVPFD+ H AAL
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 477 TSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536
KY + ELLK+ ++ + LLM+RN+F YVFK +Q++I+A IT T+F RT M+ + D
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSL 596
LY+GAL F M+I +FNGF E++M+V++LPV YK RDL FYPSW +++P++ L IP+S+
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 597 IESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSF 656
+ES W+ VTYY IG+ P+ RF +Q LL F + QM+ LFR+I S+ R M++ANT G+
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 657 AMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKK--AGNSNFS 714
+L+V LGGF++ + IP WW W +WVSPL YA N VNE W K + NS
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRWMNKMASSNSTIK 752
Query: 715 LGEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQE 774
LG +L ++ + WYWI VGA+L + +YLNPLGK+ ++ ++E ++
Sbjct: 753 LGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEENED 812
Query: 775 RD------RR--------RKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFG 820
D RR R+GE V R ++ +G +KGMVLPF PL+M+F
Sbjct: 813 ADQGKDPMRRSLSTADGNRRGE--VAMGRMSRDSAAEASGGAGNKKGMVLPFTPLAMSFD 870
Query: 821 NINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880
++ YFVD+P E++ +GV E RLQLL VTGAFRPGVLTAL+GVSGAGKTTLMDVLAGRKT
Sbjct: 871 DVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT 930
Query: 881 GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ 940
GG IEGD+ ISG+PK QETFARISGYCEQ DIHSP +TV ESL+FSA+LRLP E+ + +
Sbjct: 931 GGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEK 990
Query: 941 RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
FV++VMELVEL SL +++GLPG+ GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLD
Sbjct: 991 MMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1050
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCE 1060
ARAAAIVMR VRN V+TGRT+VCTIHQPSIDIFE+FDEL+ MKRGG++IYAGPLG S +
Sbjct: 1051 ARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNSHK 1110
Query: 1061 LIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXX 1120
+++YFE+ GV KI YNPA WMLE +S E +L VDFAE+Y +S L QRN+ LV+
Sbjct: 1111 VVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVKEL 1170
Query: 1121 XXXXXXXXXXNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSIC 1180
F+T++SQ+ QF +CL KQ +YWR+P Y VRF +T+ SL++G++
Sbjct: 1171 SVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGTVF 1230
Query: 1181 WKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPF 1240
W+ G R N DL +G++Y A++F+GI N S VQP+V+VER V YRERAAGMYSA+P+
Sbjct: 1231 WQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAMPY 1290
Query: 1241 AFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAI 1300
A +QV E PYV Q + Y I Y+M FEW A KF ++
Sbjct: 1291 AISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTVSL 1350
Query: 1301 TPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDD 1360
TPN VA+I A+ Y ++NLFSGF I +IP +W WYYW P+AW++YGL SQ+GD +
Sbjct: 1351 TPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWIWYYWICPVAWTVYGLIVSQYGDVE 1410
Query: 1361 KLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
+++ G + VK ++D +GF+ DF+ A+++AF FA IFA+ I+ FQ R
Sbjct: 1411 TRIQVLGGAPDLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCIRTLNFQTR 1469
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3332 (1178.0 bits), Expect = 0., P = 0.
Identities = 662/1405 (47%), Positives = 918/1405 (65%)
Query: 22 EEALRWAALERLPTYARARRGIFKNVVGDVKE-----VDVSELAVQEQRLVLDRLVNAVE 76
E AL+WA +ERLPT R R + + + E VDV++L E+ L++++L+ +E
Sbjct: 56 EYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRVVDVTKLGAVERHLMIEKLIKHIE 115
Query: 77 DDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHL-GSRALPTIPNFIFNMTEALL 135
+D + ++R+R + V +ELP IEVR+++L V + + +ALPT+ N + L+
Sbjct: 116 NDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRVLSELV 175
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKI 195
+ L + + +K+ I++D++GII+P RLTLLLGPPS GK + SG+I
Sbjct: 176 K-LTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLKCSGEI 234
Query: 196 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+YNGH EFVP +TSAY+SQ D +AEMTVRET+DF+ +CQGVGS+ D++ E+++REK
Sbjct: 235 SYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVSKREKE 294
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
GI PD ++D +MK+ ++ G + SL +YI+KILGLD CA+ L+GD M +GISGGQKKRL
Sbjct: 295 KGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGGQKKRL 354
Query: 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375
TT E++VGP + LFMDEI+NGLDSST +QI+K L+ T ++SLLQPAPE+Y+LF
Sbjct: 355 TTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPESYDLF 414
Query: 376 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 435
DD++L+++G+IVY GPR VL+FF GF CP+RK VADFLQEV SKKDQ QYW + LP
Sbjct: 415 DDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWWHEDLP 474
Query: 436 YRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQ 495
Y ++S ++ F GK + + L+ P+DR +H ALS S Y EL + +
Sbjct: 475 YSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIACISRE 534
Query: 496 LLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNG 555
LLMKRN F+Y+FK QL++ A ITMTVF RT M I G Y+ AL+F+++I+L +G
Sbjct: 535 YLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIH-GNSYMSALFFALIILLVDG 593
Query: 556 FTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPN 615
F E+SM +L V YK + L FYP+W Y IP+ L +P S ES W ++YYVIGY P
Sbjct: 594 FPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVIGYTPE 653
Query: 616 VVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIP 675
RF +Q +L F +H SI +FR + ++ + ++ + T GSF +L GF+I S+P
Sbjct: 654 ASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIPPPSMP 713
Query: 676 KWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIG 735
W WGFW +PL Y + SVNEFL W++ N NF+LG IL+ R + Y YW+
Sbjct: 714 AWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQPN-NFTLGRTILQTRGMDYNGYMYWVS 772
Query: 736 VGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRS 795
+ A+LG+ ++L +A++S+ +L E K E +++
Sbjct: 773 LCALLGFTVLFNIIFTLALTFLKSPTSSRAMISQDKLSELQGTEKST----EDSSVRKKT 828
Query: 796 SSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPG 855
+ K ++ MVLPF+PL++ F ++NYFVD+PVE++ +G + +LQLL ++TGAFRPG
Sbjct: 829 TDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDITGAFRPG 888
Query: 856 VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915
+LTAL+GVSGAGKTTL+DVLAGRKT G IEGDI ISG+PK QETFAR+SGYCEQ DIHSP
Sbjct: 889 ILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCEQTDIHSP 948
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975
+TV ES+++SAWLRL EI+ T+ FV++V+E +EL + +L+G+ G++GLSTEQRK
Sbjct: 949 NITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSGLSTEQRK 1008
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
RLTIAVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ +TGRTIVCTIHQPSIDIFE+
Sbjct: 1009 RLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQPSIDIFEA 1068
Query: 1036 FDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESR 1095
FDEL+ +KRGG +IY GPLG S +I+YFE+V +PKI+ +NPA WML+V+S E
Sbjct: 1069 FDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVSSQSVEIE 1128
Query: 1096 LGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSFANQFLACLRKQNLSY 1155
LGVDFA+IY S L++RN ELV+ F ++QS+ QF + L K NLSY
Sbjct: 1129 LGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSILWKMNLSY 1188
Query: 1156 WRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITN-ASA 1214
WR+P Y +R +T+V SL+ G++ WK G + QQ +F G++Y VLF+GI N ASA
Sbjct: 1189 WRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLGINNCASA 1248
Query: 1215 VQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAV 1274
+Q ER V YRER AGMYSA +A QVV E PY+F QA + + Y M F +A
Sbjct: 1249 LQ-YFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIGFYPSAY 1307
Query: 1275 KFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIY 1334
K +ITPN VAAI+ + Y+ +NLFSGF+I ++P +
Sbjct: 1308 KVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGW 1367
Query: 1335 WRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGA 1394
W W Y+ P +W+L G +SQ+GD + + + G S V LKD FGF HD L +
Sbjct: 1368 WIWLYYLTPTSWTLNGFISSQYGDIHEEINVF-GQ-STTVARFLKDYFGFHHDLLAVTAV 1425
Query: 1395 MVVAFATIFAMIFAYAIKAFKFQKR 1419
+ +AF A +FA+ + FQ+R
Sbjct: 1426 VQIAFPIALASMFAFFVGKLNFQRR 1450
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3311 (1170.6 bits), Expect = 0., P = 0.
Identities = 666/1419 (46%), Positives = 912/1419 (64%)
Query: 11 RTSSFRDEVED-----EEALRWAALERLPTYARARRGIF-KNVVGDVKE---VDVSELAV 61
R+SS R+E ED E AL+WA ++RLPT+ R R + K G K VDV++L
Sbjct: 6 RSSSSRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGA 65
Query: 62 QEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHL-GSRAL 120
E+ L++++L+ +E+D + ++R+R E V +E P IEVR+++L VE+ + +AL
Sbjct: 66 MERHLMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKAL 125
Query: 121 PTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXX 180
PT+ N + ++ LL+ L R N + + IL D+SGII P RLTLLLGPP GK
Sbjct: 126 PTLWNSLKHVFLDLLK-LSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKA 184
Query: 181 XXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
+ G+I+YNGHG E VP +TSAY+SQ D +AEMT RET+DF+ +CQGVG
Sbjct: 185 LSGNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVG 244
Query: 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300
S+ D++ E+++REK GI PD ++D +MK+ ++ G K SL +YI+KILGLD CA+TLVG
Sbjct: 245 SRTDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVG 304
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
+ M +GISGGQKKRLTT E++VGP + LFMDEI+NGLDSST +QIIK L+ + T
Sbjct: 305 NAMKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATV 364
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
+SLLQPAPE+Y+LFDD++L++EG+IVY GPR VL FF GF CP+RK VADFLQEV
Sbjct: 365 FVSLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVI 424
Query: 421 SKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKY 480
SKKDQ QYW + LP+ ++S ++ F G+ + E L+ P+D H ALS + Y
Sbjct: 425 SKKDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVY 484
Query: 481 GEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540
+ EL + + + LLMKRN F+Y+FK QL++ A+ITMTVF RT M I G Y
Sbjct: 485 SLPKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIH-GNSY 543
Query: 541 LGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESG 600
+ L+F+ V++L +G E+SM V +L V YK + L FYP+W Y IP+ L IP S ES
Sbjct: 544 MSCLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESL 603
Query: 601 FWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLV 660
W +TYYVIGY P RF RQ ++ F +H SI +FR I ++ + + A T GSF ML+
Sbjct: 604 VWTCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLI 663
Query: 661 VMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAIL 720
GF I +P W WGFWV+P+ YA+ SVNEFL W K +N +LG IL
Sbjct: 664 TFVFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRWQKMQP-TNVTLGRTIL 722
Query: 721 RQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVVSKKELQERDRRRK 780
R L + Y YW+ + A+LG S+L + ++S+ +L E +
Sbjct: 723 ESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTKD 782
Query: 781 GENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLED 840
++ + L S N K M+LPF+PL++ F ++NY+VDVPVE+K +G E
Sbjct: 783 SS---VKKNKPLDSSIKTNEDPGK---MILPFKPLTITFQDLNYYVDVPVEMKGQGYNEK 836
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+LQLL +TGAFRPGVLTAL+G+SGAGKTTL+DVLAGRKT G IEG+I ISG+ K QETF
Sbjct: 837 KLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETF 896
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
AR+SGYCEQ DIHSP +TV ESL++SAWLRL EI +T+ FV++V+E +EL + AL
Sbjct: 897 ARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDAL 956
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+G+ G++GLSTEQRKRLT+AVELVANPSI+FMDEPT+GLDARAAAIVMR V+N+ TGRT
Sbjct: 957 VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRT 1016
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNP 1080
IVCTIHQPSI IFE+FDEL+ +KRGG +IY+GPLG S +I+YF+ + GV KIR YNP
Sbjct: 1017 IVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNP 1076
Query: 1081 AAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVEXXXXXXXXXXXXNFSTKYSQSF 1140
A WMLEVTS E+ L +DFA+IY S+L++ N ELV+ +F ++Q++
Sbjct: 1077 ATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNW 1136
Query: 1141 ANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSM 1200
QF +CL K +LSYWR+P Y +R +T + S + G + W G K + QQ+LF +G++
Sbjct: 1137 WEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAI 1196
Query: 1201 YVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYC 1260
Y VLF+GI N ++ ER V YRER AGMYSA +A AQVV E PY+F Q+ +
Sbjct: 1197 YGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFV 1256
Query: 1261 SIFYSMASFEWTAVKFISXXXXXXXXXXXXXXXXXXXXAITPNHNVAAIIAAPCYMLWNL 1320
+ Y M F + K +ITPN VAAI+ + + +N+
Sbjct: 1257 IVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNI 1316
Query: 1321 FSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKD 1380
F+GF+I +IP +W W+Y+ P +W+L +SQ+GD + + T +V L+D
Sbjct: 1317 FAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKINAFGETKTVA--SFLED 1374
Query: 1381 VFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419
FGF HD L+I +++AF A ++A+ + FQKR
Sbjct: 1375 YFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1812 (642.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 349/772 (45%), Positives = 503/772 (65%)
Query: 9 FSRTSSFRDEVEDEEALRWAALERLPTYARA------RRGIFKNVV-----GDVKE-VDV 56
F+R S+ +DEE LRWAA+ RLP+ + RR + G+V + +DV
Sbjct: 22 FARPSNAETVEQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQTIDV 81
Query: 57 SELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLG 116
+L ++ +++ + + + D + +++R + V +E+PKIEVRF+NL +E+ V G
Sbjct: 82 KKLDRADREMLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAG 141
Query: 117 SRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXX 176
+RALPT+ N + E L LRI + + KL IL D+SGII+P R+TLLLGPP SGK
Sbjct: 142 TRALPTLVNVSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKST 201
Query: 177 XXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236
+ +G ITYNG +F RTSAY+SQ D +AE+TVRETLDFA +C
Sbjct: 202 LLLALAGKLDKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARC 261
Query: 237 QGVGSKY-DMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295
QG + + +L R EK GI+P ++D FMK+ ++ G+K S+ +Y++K+LGLD C+
Sbjct: 262 QGASEGFAGYMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCS 321
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++M++G+SGGQ+KR+TTGE+ VGP + LFMDEIS GLDSSTT+QI+K +++
Sbjct: 322 DTMVGNDMMRGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHL 381
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
+D T +++LLQPAPE ++LFDD+ILLSEG +VYQGPR V+ FF S+GF P RK VADF
Sbjct: 382 MDATVLMALLQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADF 441
Query: 416 LQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAAL 475
LQEVTSKKDQ QYW++P PY++I A AF + G +LA PFD++ P+AL
Sbjct: 442 LQEVTSKKDQAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSAL 501
Query: 476 STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535
+K+ E LK F +LLL+KR+ F+Y F+ Q+ V L+T TVF +T +H +
Sbjct: 502 CRTKFAISGWENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQ 561
Query: 536 DGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTS 595
G YL L+F +V ++FNGF+E+ +++++LPV YK RD F+P+W ++I SW L +P S
Sbjct: 562 FGNEYLSCLFFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYS 621
Query: 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655
++E+ W V Y+ +G P+ RF R +LL F +HQM++GLFR++ SL R+M++ANTFGS
Sbjct: 622 VLEAVVWSGVVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGS 681
Query: 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSL 715
A+L+V LGGF+I + I WW+WGFWVSPL Y Q A +VNEF W + S+ ++
Sbjct: 682 AAILIVFLLGGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPSAISDTTI 741
Query: 716 GEAILRQRSLFPESYWYWIGVGAMLGYXXXXXXXXXXXXSYLNPLGKQQAVV 767
G +L+ RS YWYWIG+ ++GY +YLNPL K +AVV
Sbjct: 742 GLNLLKLRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVV 793
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.5611 | 0.9816 | 0.9534 | N/A | no |
| Q0JLC5 | PDR3_ORYSJ | No assigned EC number | 0.6055 | 0.9943 | 0.9684 | yes | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6042 | 0.9922 | 0.9770 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6019 | 0.9887 | 0.9783 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.5906 | 0.9873 | 0.9756 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6048 | 0.9943 | 0.9684 | N/A | no |
| O81016 | AB32G_ARATH | No assigned EC number | 0.7908 | 1.0 | 0.9992 | yes | no |
| Q8GU87 | PDR6_ORYSJ | No assigned EC number | 0.7277 | 0.9978 | 0.9929 | yes | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.6108 | 0.9964 | 0.9751 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | estExt_fgenesh4_pg.C_LG_XVIII0607 | hypothetical protein (1420 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1419 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-101 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-92 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-75 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-65 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-61 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-54 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 4e-50 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 3e-46 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-45 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 4e-41 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 3e-39 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-34 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-32 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-31 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-29 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 1e-28 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 4e-27 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-25 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 3e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-25 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-24 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-23 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-22 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-22 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-22 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-21 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-21 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 5e-21 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-20 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-19 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-19 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-19 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-18 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 9e-18 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 1e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-17 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-17 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 5e-17 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-17 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 7e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 1e-16 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-16 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-16 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 3e-16 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-16 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-16 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 6e-16 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-16 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-16 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-16 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-15 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-15 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-15 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-15 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-15 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 4e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 6e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-15 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-14 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-14 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-14 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 6e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-13 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-13 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-13 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-13 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-13 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-13 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-13 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-13 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-13 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 5e-13 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 6e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 7e-13 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 8e-13 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-12 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-12 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-12 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-12 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-12 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-12 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-12 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-12 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 3e-12 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-12 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 5e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-12 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 6e-12 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-12 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 7e-12 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 8e-12 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 8e-12 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-12 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-12 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-12 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-11 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-11 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-11 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-11 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-11 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-11 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-11 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-11 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-11 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 4e-11 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 4e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-11 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 7e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-10 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-10 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-10 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-10 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-10 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-10 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-10 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 6e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 6e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 6e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-10 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-10 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 7e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-10 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 8e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-09 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-09 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-09 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-09 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-09 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-09 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-09 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-09 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-09 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 6e-09 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-09 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-09 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 7e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-09 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-09 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 8e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 8e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 8e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 9e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 9e-09 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 9e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 9e-09 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-08 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-08 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-08 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-08 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-08 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 3e-08 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-08 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-08 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-08 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-08 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-08 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 7e-08 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-08 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 8e-08 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-07 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-07 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-07 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-07 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-07 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-07 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-07 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-07 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 4e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 4e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 5e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 5e-07 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-07 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 5e-07 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 5e-07 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-07 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 6e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 6e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 6e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-07 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-07 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 7e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 7e-07 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 9e-07 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-06 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-06 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 1e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 1e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-06 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 1e-06 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-06 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-06 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-06 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-06 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-06 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-06 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 4e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 5e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 5e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 5e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 5e-06 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 6e-06 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 7e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-06 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 8e-06 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 8e-06 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-06 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 9e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 9e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 9e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 9e-06 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 9e-06 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 9e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-05 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-05 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-05 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-05 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-05 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-05 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-05 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-05 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 2e-05 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 2e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-05 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-05 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 4e-05 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 5e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 5e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-05 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-05 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-05 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 6e-05 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-05 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 9e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 9e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 9e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-04 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 2e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-04 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-04 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 4e-04 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 4e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 4e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 4e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-04 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-04 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 6e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 6e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 6e-04 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 7e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-04 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 8e-04 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 8e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 8e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 8e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 9e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-04 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.001 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 0.002 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 0.002 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 0.002 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 0.002 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.002 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 0.002 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.002 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 0.002 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 0.003 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 0.003 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.003 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.003 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.003 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.003 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.003 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.004 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.004 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.004 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.004 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.004 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 0.004 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 0.004 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1936 bits (5018), Expect = 0.0
Identities = 831/1449 (57%), Positives = 1069/1449 (73%), Gaps = 37/1449 (2%)
Query: 6 ENVFS------RTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDV-------- 51
E+VFS R +S DE DEEAL+WAA+E+LPTY+R R I K+ V +
Sbjct: 24 EDVFSGGSQSRRRTSSVDE--DEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLH 81
Query: 52 KEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVES 111
KEVDV++L +++ +D + E+D E+F + R R + V ++LP +EVRF++LTVE+
Sbjct: 82 KEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEA 141
Query: 112 FVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPS 171
++GSRALPT+PN N+ E+ L L I ++KLTIL D SGII+PSR+TLLLGPPS
Sbjct: 142 DCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPS 201
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231
SGKTTLLLALAG+L L+VSG+ITYNG+ EFVP +TSAY+SQ D V MTV+ETLD
Sbjct: 202 SGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLD 261
Query: 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
F+ +CQGVG++YD+++ELARREK AGI P+ ++D+FMK+ A+ G K+SL+ +Y +KILGL
Sbjct: 262 FSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGL 321
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
D C DT+VGDEM++GISGGQKKR+TTGE++VGP + LFMDEIS GLDSSTTYQI+K L+
Sbjct: 322 DICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ 381
Query: 352 STRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKN 411
+ T ++SLLQPAPE ++LFDD+ILLSEGQIVYQGPR +L+FF S GF CP+RK
Sbjct: 382 IVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKG 441
Query: 412 VADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNH 471
ADFLQEVTSKKDQEQYW++ PYRYIS +FAE F S+H G L EL+VPFD+ +H
Sbjct: 442 TADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSH 501
Query: 472 PAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH 531
AAL SKY + ELLK ++ + LLMKRN+F+YVFK +Q++IVA I TVF RT MH
Sbjct: 502 KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561
Query: 532 KTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS 591
+ +DG LY+GAL FSM+I +FNGF E+++++ +LPV YK RDL F+P W +T+P++ L
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLG 621
Query: 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN 651
IP S+IES WV +TYY IG+ P RF +QLLL F + QM+ G+FR+I S+ R MI+AN
Sbjct: 622 IPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIAN 681
Query: 652 TFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-DKKAGN 710
T G+ +L+V LGGFI+ + IP WW W +WVSPL Y NA +VNE W +K A +
Sbjct: 682 TGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD 741
Query: 711 SNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKK 770
++ LG A+L +F + WYWIGVGA+LG+T+LFN LFT L+YLNPLGK+QA++S++
Sbjct: 742 NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEE 801
Query: 771 ELQERD----------------RRRKGENVVIELREYLQRSSSLNGKYFK----QKGMVL 810
+E + R+ + E L ++ + + ++GMVL
Sbjct: 802 TAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVL 861
Query: 811 PFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 870
PF PL+M+F ++NYFVD+P E+K++GV EDRLQLL VTGAFRPGVLTAL+GVSGAGKTT
Sbjct: 862 PFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTT 921
Query: 871 LMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930
LMDVLAGRKTGG IEGDI ISG+PK+QETFARISGYCEQNDIHSP +TV ESL++SA+LR
Sbjct: 922 LMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLR 981
Query: 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990
LP E+ E + FV+EVMELVEL +L A++GLPG+ GLSTEQRKRLTIAVELVANPSI+
Sbjct: 982 LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSII 1041
Query: 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050
FMDEPTSGLDARAAAIVMRTVRN V+TGRT+VCTIHQPSIDIFE+FDELL MKRGG++IY
Sbjct: 1042 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIY 1101
Query: 1051 AGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLF 1110
+GPLG S ++I+YFEA+ GVPKI+ YNPA WMLEV+S E +LG+DFAE Y+ S+L+
Sbjct: 1102 SGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLY 1161
Query: 1111 QRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTV 1170
QRN+ LV+ LS P P + L F+T+YSQS QF +CL KQ +YWR+P Y VRFF+T+
Sbjct: 1162 QRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTL 1221
Query: 1171 VISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRER 1230
+LM+G+I WK G KR N DL +G+MY AVLF+GI N S VQP+V+VER V YRER
Sbjct: 1222 AAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRER 1281
Query: 1231 AAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYF 1290
AAGMYSALP+A AQVV E PYV Q Y I Y+M +FEWTA KF + F +F+ LYF
Sbjct: 1282 AAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYF 1341
Query: 1291 TFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYG 1350
T+YGMMT ++TPN VAAI AA Y L+NLFSGF I +IP +W WYYW P+AW++YG
Sbjct: 1342 TYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYG 1401
Query: 1351 LQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYA 1410
L SQ+GD + +K+ G +K ++D +G+ DF+ A++V F FA IFA+
Sbjct: 1402 LIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFC 1461
Query: 1411 IKAFKFQKR 1419
I+ FQ R
Sbjct: 1462 IRTLNFQTR 1470
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1130 bits (2926), Expect = 0.0
Identities = 398/1349 (29%), Positives = 637/1349 (47%), Gaps = 118/1349 (8%)
Query: 76 EDDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEA 133
E + + + RK ++ + K+ V ++NL+ V S PT PN + +
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 134 LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-GHHLQVS 192
R+L+ +R ++ IL + G+I+P LT++LG P SG +TLL +A G H+ V
Sbjct: 61 GFRKLKKFRDTKTF-DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 193 GKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G ITY+G +E Y ++ D +TV ETLDFA +C+ ++ D ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ IA + M GL +T VG++ ++G+SGG
Sbjct: 180 YAKHIA--------------------------DVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
++KR++ E +G A++ D + GLDS+T + I+ LK S LD T ++++ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWS 430
AYELFD VI+L EG +Y GP +F MGF CP R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 431 NPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDR----------RFNHPA-----AL 475
Y +P +F + + L +E+ DR R +H A
Sbjct: 333 G-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTR 391
Query: 476 STSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTID 535
+S Y S +K L MK N +F +I+ALI +VF+
Sbjct: 392 PSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTS 448
Query: 536 DGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTS 595
D GAL+F+++ F+ E++ + P++ KHR Y I S IP
Sbjct: 449 DFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFK 508
Query: 596 LIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGS 655
+IES + + Y+++ + RF LL+ F LFR IG++ + + A T +
Sbjct: 509 IIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAA 568
Query: 656 FAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWD---------- 705
+L + GF I R S+ W W ++V+PL YA + VNEF G ++
Sbjct: 569 ILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSGGG 628
Query: 706 -KKAGNSN-------------FSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFT 751
G +N + G+ L+ + S W G ++G+T+ F ++
Sbjct: 629 YDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNS-HKWRNFGIIIGFTVFFFFVYI 687
Query: 752 FFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLP 811
+ ++ ++ + + ++ GE +S+ N + G VL
Sbjct: 688 LLTEFNKGAKQKGEILVFRRGSLKRAKKAGET----------SASNKNDI---EAGEVLG 734
Query: 812 FQPLSMAFGNINYFVDVPVELKQE-----------GVLEDRLQLLVNVTGAFRPGVLTAL 860
L+ ++N D+ E ++ + +++ +L NV G +PG LTAL
Sbjct: 735 STDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTAL 794
Query: 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920
+G SGAGKTTL++VLA R T G+I G + +F R GY +Q D+H P TV
Sbjct: 795 MGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854
Query: 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA 980
ESL FSA+LR P + + +VEEV++L+E+ S + A++G+PG GL+ EQRKRLTI
Sbjct: 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIG 913
Query: 981 VELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
VELVA P ++F+DEPTSGLD++ A + + +R + + G+ I+CTIHQPS +FE FD L
Sbjct: 914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRL 973
Query: 1040 LFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVD 1099
L +++GG+ +Y G LG S +I YFE G PK NPA WMLEV + D
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHANQD 1032
Query: 1100 FAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFST---KYSQSFANQFLACLRKQNLSYW 1156
+ E++R S+ +Q + ++ L ++ N KY+ S QF L + YW
Sbjct: 1033 YHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYW 1092
Query: 1157 RNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQ 1216
R P Y +FF T+ +L +G +K G + Q L N M ++++A + +
Sbjct: 1093 RTPDYLYSKFFLTIFAALFIGFTFFKVG---TSLQGLQNQMFAVFMATVLFNPLIQQYLP 1149
Query: 1217 PVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVK- 1275
P V+ RER + +S L F AQ+ +E PY I+ I+Y F W A K
Sbjct: 1150 PFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKT 1209
Query: 1276 ------FISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHK 1329
+ + LYF+ G M + PN + AA++A+ + + F G +
Sbjct: 1210 GQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPS 1269
Query: 1330 RIPIYWRWYYWANPIAWSLYGLQTSQFGD 1358
R+P +W + Y +P + + L ++ D
Sbjct: 1270 RMPGFWIFMYRCSPFTYLVQALLSTGLAD 1298
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 320 bits (823), Expect = e-101
Identities = 112/239 (46%), Positives = 144/239 (60%), Gaps = 47/239 (19%)
Query: 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
+ + N+NY V V + QLL N++G +PG LTAL+G SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 874 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933
VLAGRKT G+I G+I I+G P + F R +GY EQ D+HSP LTV E+L FSA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
EPTSGLD++AA ++R ++ + ++G+ I+CTIHQPS IFE FD LL +KRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 312 bits (801), Expect = 2e-92
Identities = 172/589 (29%), Positives = 290/589 (49%), Gaps = 32/589 (5%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQET 899
R LL NV+G +PG L A++G SGAGKTTLM+ LA R G+ G + ++G P +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS Y +Q+D+ P LTV E L+F A LR+P + + +R V+EV++ + L +
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 960 LIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
IG+PG + GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ + G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGY 1078
+TI+CTIHQPS ++FE FD+++ M G + Y G + + +F + G P Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSPD----QAVPFFSDL-GHP-CPENY 269
Query: 1079 NPAAWMLEVTSPVEESRLGV----------DFAEIYRRSNLFQRNRELVESLSKPSPSSK 1128
NPA + ++V + + S R L N L +
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDML--VNTNLWSGKAGGLVKDS 327
Query: 1129 KLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRE 1188
+ Y+ S+ QF A L++ LS R+P VR T++ ++++G I G
Sbjct: 328 ENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLT-- 385
Query: 1189 NQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIE 1248
Q+ + N G++++ + + N V V + E V RE +G+Y + A+ + E
Sbjct: 386 -QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAE 444
Query: 1249 FPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAA 1308
P ++ SI Y M A F++++F + T +G + + + ++A
Sbjct: 445 LPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMAL 504
Query: 1309 IIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLY---GLQTSQFGDDDKLVKL 1365
+ P + + LF GF I IP+Y++W + ++W Y GL +Q+ D D +
Sbjct: 505 TVGPPFVIPFLLFGGFFINSDSIPVYFKWLSY---LSWFRYGNEGLLINQWSDVDNIECT 561
Query: 1366 -SDGTGSVP-VKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIK 1412
++ TG P ++ + FR+ L + +V F ++ +A++
Sbjct: 562 SANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALR 610
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 2e-75
Identities = 98/239 (41%), Positives = 143/239 (59%), Gaps = 45/239 (18%)
Query: 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
++++F N+ V + QLL NV+G +PG LTA++G SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 874 VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933
LAGR+TG + G++ I+G P + +F +I GY Q+DI P LTV E+L+F+A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
EPTSGLD+ +A VM +R + +TGRTI+C+IHQPS +IFE FD+LL + + G +IY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 1e-65
Identities = 159/636 (25%), Positives = 273/636 (42%), Gaps = 85/636 (13%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH--GF 202
R + +L ++SG+ +P L ++G +GKTTL+ ALA R ++ SG + NG
Sbjct: 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDA 94
Query: 203 KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
KE SAYV Q D + +TVRE L
Sbjct: 95 KEM--RAISAYVQQDDLFIPTLTVREHL-------------------------------- 120
Query: 263 DLDIFMKSFALGGQKTS----LVVEYIMKILGLDTCADTLVGDE-MLKGISGGQKKRLTT 317
+F + + T V+ +++ LGL CA+T +G +KG+SGG++KRL
Sbjct: 121 ---MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAF 177
Query: 318 G-ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELF 375
ELL P +LF DE ++GLDS Y +++ LK A G T+I ++ QP+ E +ELF
Sbjct: 178 ASELLTDP-PLLFCDEPTSGLDSFMAYSVVQVLKG--LAQKGKTIICTIHQPSSELFELF 234
Query: 376 DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLP 435
D +IL++EG++ Y G + FF+ +G CP+ N ADF +V + +P
Sbjct: 235 DKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAV-----------IP 283
Query: 436 YRYISPGKFAEA-FHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNW 494
+ E S+ + L + S+ E S+
Sbjct: 284 GSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIG--YNASWWT 341
Query: 495 Q-LLLMKRNSFIYVFK--------FIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALY 545
Q L+KR S++ V + IQ ++ A++ ++ + K + + GAL+
Sbjct: 342 QFYALLKR-SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQN---INGALF 397
Query: 546 FSMVIILF-NGFTEVSMLVAKLPV-LYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
+ + F N F +++ A+LPV L + R + S + + A +P +I +
Sbjct: 398 LFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA-ELPLFIILPALFT 456
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
++TY++IG F L L + ++ +I + +A T G ++ +
Sbjct: 457 SITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLL 516
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSN-----FSLGEA 718
GGF I+ DSIP ++ W ++S Y +N++ + + ++N S GE
Sbjct: 517 FGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD-NIECTSANTTGPCPSSGEV 575
Query: 719 ILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFL 754
IL S + + +L + A F +
Sbjct: 576 ILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRI 611
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 209 bits (533), Expect = 1e-61
Identities = 84/254 (33%), Positives = 117/254 (46%), Gaps = 64/254 (25%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
RSK+ IL D SG+++P + L+LG P SG +TLL ALA R ++ V G I YN
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 199 GHGFKEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
G +KEF P YVS++D +TVRETLDFA +C+G E +
Sbjct: 71 GIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKG-------------NEFVR 117
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
GI GG++ + + A+ LV
Sbjct: 118 GIS--------------GGERKRV------------SIAEALV----------------- 134
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
A VL D + GLDSST +I+K ++ L TT +SL Q + E Y+LFD
Sbjct: 135 ------SRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFD 188
Query: 377 DVILLSEGQIVYQG 390
V++L EG+ +Y G
Sbjct: 189 KVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 189 bits (481), Expect = 3e-54
Identities = 82/231 (35%), Positives = 135/231 (58%), Gaps = 13/231 (5%)
Query: 825 FVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGI 883
+ DV ++ K ++L +V+ G + A++G SG+GKTTL+D ++GR + GG
Sbjct: 6 WWDVGLKAKNWN---KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT 62
Query: 884 IEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAF 943
G I +G P++ + F + Y Q+DI PGLTV E+L ++A LRLP + R
Sbjct: 63 TSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLP-RKSSDAIRKK 121
Query: 944 VEEVMEL--VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
E + L + LT + G L+ G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+
Sbjct: 122 RVEDVLLRDLALTRIGGNLVK-----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDS 176
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
A ++ T+ + R ++ TIHQP D+F FD +L + GE++Y+G
Sbjct: 177 FTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 189 bits (482), Expect = 4e-50
Identities = 155/593 (26%), Positives = 281/593 (47%), Gaps = 46/593 (7%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L VTG PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRT 142
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G+ Q+DI P LTV E+L+F + LRLP + + + E V+ + LT +IG
Sbjct: 143 -GFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
I G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ ++ G+TIV
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1024 TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAW 1083
++HQPS +++ FD +L + G L + K + + YFE+V P NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSEGRCLFF-----GKGSDAMAYFESVGFSPSF--PMNPADF 314
Query: 1084 MLEVTSPV-------EESRLGVDFAEIYRRSNLFQ-RNRELVESLSKP-------SPSSK 1128
+L++ + V E + V + + + L + + +E P +S
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1129 KLNFSTKYS--QSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAK 1186
K + S+ ++ NQF + L +++L ++ + +R F + +L+ G + W
Sbjct: 375 KEHRSSDRISISTWFNQF-SILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWW----- 428
Query: 1187 RENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVV 1246
+ +D+ + +G ++ +F G+ + V ER + +ERA+GMY+ + A++V
Sbjct: 429 HSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIV 488
Query: 1247 IEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNV 1306
+ P I+ ++ Y MA + F+ + + +L G+ A +
Sbjct: 489 GDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKK 548
Query: 1307 AAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKL- 1365
A+ I + + L GF + HK +P W + + +S L Q+G+ ++ L
Sbjct: 549 ASTIVTVTMLAFVLTGGFYV-HK-LPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLL 606
Query: 1366 ----SDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAF 1414
G+ K + +DV G + + + + M Y + A+
Sbjct: 607 GCSLPHGSDRASCKFVEEDVAG--------QISPATSVSVLIFMFVGYRLLAY 651
|
Length = 659 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-46
Identities = 53/215 (24%), Positives = 103/215 (47%), Gaps = 7/215 (3%)
Query: 1143 QFLACLRKQNLSYWRNPQYT-AVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMY 1201
Q A L+++ L WR+P R ++++L+ G++ N G ++
Sbjct: 2 QLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLLF 57
Query: 1202 VAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCS 1261
++LF ++ + + PV ER V RE A+ +YS + A++++E P QA+I+
Sbjct: 58 FSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLL 117
Query: 1262 IFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLF 1321
I Y M + +F ++ + T L + G+ A+ P+ A+ I + L
Sbjct: 118 IVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLL 175
Query: 1322 SGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQF 1356
SGF I +P + +W Y+ NP+ +++ L+ ++F
Sbjct: 176 SGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 165 bits (421), Expect = 2e-45
Identities = 74/268 (27%), Positives = 117/268 (43%), Gaps = 18/268 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQETF 900
L V+ PG + L+G +GAGKTTL+ +LAG G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKV 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R GY Q P LTV E+L F A L S+ E E + +EE++EL L +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R + G
Sbjct: 134 VR-----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNP 1080
+ + E D ++ + G++I G EL + F + ++ P
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTPE----ELKEKFGGKGVI-ELEPERLE 242
Query: 1081 AAWMLEVTSPVEESRLGVDFAEIYRRSN 1108
A +LE V+ + E
Sbjct: 243 LAELLEGLKLVKGEEELAEILEALLEEG 270
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 4e-41
Identities = 58/216 (26%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 486 ELLKTSFNWQLLLMKRNSF-IYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544
LK + L R+ +++ IQ L++AL+ TVF T G G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLD----TSLGGLNRPGLL 56
Query: 545 YFSMVIILFNGFTEVSMLVAK-LPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWV 603
+FS++ F+ T +S + + VL + Y Y + + +P SL+++ ++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 604 AVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMA 663
+ Y+++G + RF LL+ + GL I +L + A+ G +L ++
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 664 LGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 699
L GF I DS+P W W ++++PL YA A NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 3e-39
Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 40/251 (15%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
+ IL+D+S + ++ +LG SGKTTLL A++GR+ SG+I +NG
Sbjct: 14 KNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP 73
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
K + AYV Q D + +TVRETL +
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAIL------------------------- 108
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-EL 320
L + + + + ++ + L A T +G ++KGISGG+++R++ +L
Sbjct: 109 ----------RLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQL 158
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVI 379
L P +VL +DE ++GLDS T ++ L R VI ++ QP + + LFD ++
Sbjct: 159 LWDP-KVLILDEPTSGLDSFTALNLVSTLSQLARR--NRIVILTIHQPRSDLFRLFDRIL 215
Query: 380 LLSEGQIVYQG 390
LLS G+IVY G
Sbjct: 216 LLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 5e-39
Identities = 147/559 (26%), Positives = 262/559 (46%), Gaps = 70/559 (12%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
TIL+ ++G+ P + +LGP SGK+TLL ALAGR+ + +G I N + +
Sbjct: 82 TILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNRKPTKQILK 140
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
RT +V+Q D +TVRETL F S + L ++EKI
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEKI------------- 179
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG-ELLVGPARV 327
LV E ++ LGL C +T++G+ ++GISGG++KR++ E+L+ P+ +
Sbjct: 180 -----------LVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPS-L 227
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-SLLQPAPEAYELFDDVILLSEGQI 386
L +DE ++GLD++ Y+++ L + A G T++ S+ QP+ Y++FD V++LSEG+
Sbjct: 228 LILDEPTSGLDATAAYRLVLTL--GSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRC 285
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT---------SKKDQEQYWSNPYLPYR 437
++ G + +F S+GFS N ADFL ++ S++++ + Y
Sbjct: 286 LFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYN 345
Query: 438 YISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 497
+ K A H + + + + +S S + + S LL+ + L
Sbjct: 346 TLLAPKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQ-----RSL 400
Query: 498 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYF-SMVIILFNGF 556
+++ + Q++ AL+ +++ H D LG L+F S+ +F F
Sbjct: 401 KERKHESFNTLRVFQVIAAALLAGLMWW-----HSDFRDVQDRLGLLFFISIFWGVFPSF 455
Query: 557 TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALS-----IPTSLIESGFWVAVTYYVIG 611
V + + + K R S +YT+ S+ ++ +P LI ++ VTY++ G
Sbjct: 456 NSVFVFPQERAIFVKER-----ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAG 510
Query: 612 YDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISR 671
P + F LL+ +S GL +G+ + A+T + ML + GGF + +
Sbjct: 511 LKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHK 570
Query: 672 DSIPKWWIWGFWVSPLMYA 690
+P W ++S Y+
Sbjct: 571 --LPSCMAWIKYISTTFYS 587
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 132 bits (335), Expect = 4e-34
Identities = 85/309 (27%), Positives = 142/309 (45%), Gaps = 56/309 (18%)
Query: 130 MTEAL-LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M E + +R L Y G++ T LD +S + P + LLGP +GKTTLL LAG L
Sbjct: 1 MIEVIEVRNLTKKYGGDK---TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-- 55
Query: 188 HLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
SG+I G+ + R YV Q+ E+TVRE L+F + G+ +
Sbjct: 56 -KPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEA- 113
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
E+I E ++++ GL+ A+ V +
Sbjct: 114 ------EERI---------------------------EELLELFGLEDKANKKV-----R 135
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS-- 363
+SGG K+RL+ L+ +L +DE ++GLD + +I + L+ + T ++S
Sbjct: 136 TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTH 195
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSC--PKRKNVADFLQEVTS 421
+L+ EA EL D VI+L++G+I+ +G + + F G P+R +A+ L+ +
Sbjct: 196 ILE---EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKL 252
Query: 422 KKDQEQYWS 430
K +E+
Sbjct: 253 VKGEEELAE 261
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 8e-32
Identities = 59/218 (27%), Positives = 107/218 (49%), Gaps = 36/218 (16%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQ 897
++ +L + +G +PG + ++G G+G +TL+ LA R G + +EGDI+ +G P ++
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
E + Y + D+H P LTV E+L F+ +
Sbjct: 77 FAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK------------------------- 111
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
G + G+S +RKR++IA LV+ S++ D T GLD+ A +++ +R +
Sbjct: 112 ------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMA 165
Query: 1016 N-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ T +++Q S +I++ FD++L + G IY G
Sbjct: 166 DVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 57/184 (30%), Positives = 92/184 (50%), Gaps = 17/184 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--R 902
+++ G + L+G +GAGKTT + +L G R T G YI+GY R + A +
Sbjct: 20 DLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQ 75
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GYC Q D LTV E L F A L+ + + VE ++ ++ LT +
Sbjct: 76 SLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR 132
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LS +++L++A+ L+ PS++ +DEPTSGLD + + + + GR+I+
Sbjct: 133 -----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR-KGRSII 186
Query: 1023 CTIH 1026
T H
Sbjct: 187 LTTH 190
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 6e-29
Identities = 59/211 (27%), Positives = 97/211 (45%), Gaps = 23/211 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--- 899
L +++ + G +VG +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 900 FARISGYCEQNDIHSP-----GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G QN P G TV E + F E E+E +R VEE +ELV L
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIE-ER--VEEALELVGLE 125
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++ +
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G+TI+ H + E D ++ ++ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-28
Identities = 43/65 (66%), Positives = 52/65 (80%)
Query: 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQ 763
W K SN +LGEA+L+ R LF E+YWYWIGVGA+LG+T+LFN LFT L+YLNPLGK
Sbjct: 1 WSKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKS 60
Query: 764 QAVVS 768
QA+VS
Sbjct: 61 QAIVS 65
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 4e-27
Identities = 70/215 (32%), Positives = 106/215 (49%), Gaps = 16/215 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP--KRQ 897
+ + L V+ PG+ L+G +GAGKTTLM +LA G I I G K+
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPS--SGTIRIDGQDVLKQP 67
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+ R GY Q P TV E L + AWL+ I + +A V+EV+ELV L +
Sbjct: 68 QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRA 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
IG LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 125 KKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELGE 178
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
R ++ + H D+ +++ + G+L++ G
Sbjct: 179 DRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-25
Identities = 59/221 (26%), Positives = 105/221 (47%), Gaps = 26/221 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQE 898
+L +++ + G +T ++G +G+GK+TL+ LAG G++ + G ++
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKE- 73
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSA-----WLRLPSEIELETQRAFVEEVMELVEL 953
A+ Y Q+ GLTV E +L PS+ + E VEE +EL+ L
Sbjct: 74 -LAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEE----IVEEALELLGL 128
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
L+ ++ LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 129 EHLADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRD 183
Query: 1014 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G T+V +H ++ + D L+ +K G+++ G
Sbjct: 184 LNREKGLTVVMVLHDLNLAARYA-DHLILLKD-GKIVAQGT 222
|
Length = 258 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-25
Identities = 51/206 (24%), Positives = 79/206 (38%), Gaps = 65/206 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L NV+ + G + ALVG +G+GK+TL+ +AG G+I I G + E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK--PTSGEILIDGKDIAKLPLEE 70
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R GY Q LSG
Sbjct: 71 LRRRIGYVPQ----------------------------------------------LSGG 84
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GR
Sbjct: 85 -------------QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGR 131
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRG 1045
T++ H P + D ++ +K G
Sbjct: 132 TVIIVTHDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-25
Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 27/234 (11%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EG 886
+E++ V +L +++ + G +TAL+G +GAGK+TL+ + G ++ G
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILG-----LLKPSSG 59
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPG--LTVLESLLFSA-----WLRLPSEIELET 939
+I I G P R+ GY Q +TV + +L W R ++ +
Sbjct: 60 EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKD--- 116
Query: 940 QRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
+ V+E +E V + L IG LS Q++R+ +A L NP ++ +DEP +G+
Sbjct: 117 -KEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGV 170
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
D + ++ + G+T++ H + + FD ++ + R LI +GP
Sbjct: 171 DVAGQKEIYDLLKELRQEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 904
+V+ +PG A+VG +GAGK+TL+ + G + T G I + G P +E RI
Sbjct: 17 DVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KRI- 70
Query: 905 GYCEQN---DIHSPGLTVLESLL-----FSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
GY Q D P ++V + +L R S+ +A V+E +E V L+ L
Sbjct: 71 GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKA----DKAKVDEALERVGLSEL 125
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+ IG LS Q++R+ +A LV +P ++ +DEP +G+D + + +R +
Sbjct: 126 ADRQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR 180
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G TI+ H + + E FD +L + R ++ +G
Sbjct: 181 EGMTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
+S +L ++SG +P LT ++GP +GK+TLL ALAGR L VSG++ NG +
Sbjct: 19 KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRPLDK 77
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239
+ YV Q D +TVRETL FA + +G+
Sbjct: 78 RSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 3e-23
Identities = 38/88 (43%), Positives = 62/88 (70%), Gaps = 3/88 (3%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
L+G+SGG++KR++ LV +LF+DE ++GLDSS+ Q++ L+ A G T+I
Sbjct: 109 LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL--ADTGRTIIC 166
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQG 390
S+ QP+ E +ELFD ++LLS+G+++Y G
Sbjct: 167 SIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 4e-23
Identities = 46/203 (22%), Positives = 77/203 (37%), Gaps = 53/203 (26%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFAR 902
+++ G + L+G +GAGKTTL+ ++ G + G+I + G K E R
Sbjct: 18 DISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEVKR 73
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GY + LTV E+L S G
Sbjct: 74 RIGYLPEEPSLYENLTVRENLKLS------------------------------GG---- 99
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
++RL +A L+ +P ++ +DEPTSGLD + +R + G+TI+
Sbjct: 100 ----------MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
+ H + D + + G
Sbjct: 150 LSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 2e-22
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 24/225 (10%)
Query: 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP 894
R L +V+ G L+G +G+GK+TL+ +L G +++ G++ + G
Sbjct: 13 YPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-----LLKPTSGEVLVDGLD 67
Query: 895 KRQET----FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
E + G QN D G TV + + F L + E V E +E
Sbjct: 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLG--LPREEIEERVAEALE 124
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
LV L L LS Q++R+ IA L P I+ +DEPT+GLD + ++
Sbjct: 125 LVGLEELLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + G+TI+ H + E D ++ + G+++ G
Sbjct: 180 LLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVL-DDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 2e-22
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 46/212 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFA 901
+L +++ + G + ++G +GAGK+TL+ LAG K G+I + G
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSGEILLDGKD------- 62
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
L S EL + A+V + +EL+ L L+
Sbjct: 63 ---------------------------LASLSPKELARKIAYVPQALELLGLAHLADR-- 93
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 1020
N LS +R+R+ +A L P I+ +DEPTS LD ++ +R + G+T
Sbjct: 94 ---PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+V +H ++ D ++ +K G ++ G
Sbjct: 151 VVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 96.0 bits (240), Expect = 4e-22
Identities = 65/222 (29%), Positives = 111/222 (50%), Gaps = 19/222 (8%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEG-D 887
K G+ ++++ L +V G A+VG SG+GK+TL+++L G + T G +I G D
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 888 IYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
+ + + + G+ QN + P LTVLE++ LP I ++
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVE------LPLLIAGKSAGRRKR 120
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
EL+E+ L L+ + LS Q++R+ IA L+ NP I+ DEPT LD++ A
Sbjct: 121 AAEELLEVLGLEDRLLKKK-PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1006 IVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
V+ +R + G+TI+ H P ++ + D ++ +K G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGK 219
|
Length = 226 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 7e-22
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 29/225 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI- 903
L +V+ + PG AL+G SGAGK+TL+ L G G + I G + +
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNG--LVEPTSGSVLIDGTDINKLKGKALR 74
Query: 904 -----SGYCEQNDIHSPGLTVLESLL---------FSAWLRLPSEIELETQRAFVEEVME 949
G Q L+VLE++L + + L + E QRA +E
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALE 130
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V L + LS Q++R+ IA L+ P ++ DEP + LD ++ VM
Sbjct: 131 RVGLLDKAYQRADQ-----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMD 185
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ I G T++ ++HQ + E D ++ +K G +++ GP
Sbjct: 186 LLKRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-21
Identities = 49/209 (23%), Positives = 80/209 (38%), Gaps = 51/209 (24%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ 897
+L +V+ G + AL+G SG+GK+TL+ +AG + G I I G
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDEL 71
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ P LTVLE++
Sbjct: 72 PPLRRRIGMVFQDFALFPHLTVLENIAL-------------------------------- 99
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-N 1016
GLS Q++R+ +A L +P ++ +DEPTS LD V ++++
Sbjct: 100 ----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQ 149
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G T+V H + D ++ ++ G
Sbjct: 150 LGITVVLVTHDLD-EAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 4e-21
Identities = 56/193 (29%), Positives = 91/193 (47%), Gaps = 30/193 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 897
+V+ + RPG + L+G +GAGKTTL ++++G R T G ++ I+G P +
Sbjct: 18 DVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL-------FSAWLRLPSEIELETQRAFVEEVME 949
TF + P LTVLE+++ S L + E R EE++E
Sbjct: 78 GRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLE 129
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V L L+ G LS Q++RL IA L +P ++ +DEP +GL+ +
Sbjct: 130 RVGLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAE 184
Query: 1010 TVRNIVNTGRTIV 1022
+R + G T++
Sbjct: 185 LIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 5e-21
Identities = 63/214 (29%), Positives = 103/214 (48%), Gaps = 22/214 (10%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ 897
++Q L V+ + G A+VG SG+GK+TL+++L G R T G + IS +++
Sbjct: 16 KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKE 75
Query: 898 ETFAR---ISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R I G+ Q+ + P LT LE++ L + + + +R EE++E V
Sbjct: 76 LAAFRRRHI-GFVFQS--FNLLPDLTALENVELPL---LLAGVPKKERRERAEELLERVG 129
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L + LS Q++R+ IA L +P I+ DEPT LD+ VM +R
Sbjct: 130 LGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR 184
Query: 1013 NIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G TIV H P ++ E D ++ ++ G
Sbjct: 185 ELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 5e-21
Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQ 897
+ L +++ PG AL+G SG GKTTL+ ++AG + G+I I G P +
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPER 71
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ P LTV E++ F LR + RA V E++ELV L L
Sbjct: 72 ----RNIGMVFQDYALFPHLTVAENIAFGLKLRGVPK---AEIRARVRELLELVGLEGLL 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 1016
+ LS Q++R+ +A L PS++ +DEP S LDA+ + ++ +
Sbjct: 125 NRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE 179
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G T + H + D + M G
Sbjct: 180 LGITTIYVTHDQE-EALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 6e-21
Identities = 66/258 (25%), Positives = 105/258 (40%), Gaps = 55/258 (21%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
L+ L + ++ LDD+S I+ L++GP SGK+TLL L G LG SG+
Sbjct: 2 LKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGE 57
Query: 195 ITYNGHGFKEFVPP---RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
+ +G + R V Q D Q TV E + F
Sbjct: 58 VLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGL---------------- 101
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ G+ +E + VE ++++GL+ D L SGG
Sbjct: 102 ---ENLGLPEEEIEER---------------VEEALELVGLEGLRDRSP--FTL---SGG 138
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQP 367
QK+R+ +L +L +DE + GLD + ++++ LK G T+I + L
Sbjct: 139 QKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLD- 195
Query: 368 APEAYELFDDVILLSEGQ 385
EL D VI+L +G+
Sbjct: 196 --LLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-20
Identities = 58/228 (25%), Positives = 97/228 (42%), Gaps = 31/228 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---- 898
Q L N+ PG A++G SGAGK+TL+ + G I + G +
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 899 --TFARISGYCEQNDIHSPGLTVLESLLF----------SAWLRLPSEIELETQRAFVEE 946
R G Q+ LTVLE++L S R E + +RA
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE---DKERAL--S 128
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+E V L + + LS Q++R+ IA L P ++ DEP + LD + +
Sbjct: 129 ALERVGLADKA-----YQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183
Query: 1007 VMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
VM ++ I G T++ +HQ +D+ + + + + + GE+++ G
Sbjct: 184 VMDYLKRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 2e-19
Identities = 52/190 (27%), Positives = 80/190 (42%), Gaps = 12/190 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFA 901
L + + G LVG SGAGK+TL+ ++ + G I +S R +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R G Q+ P V E++ F E+ R + V +EL LS
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAF------ALEVTGVPPREIRKRVPAALELVGLSHKH 130
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LP LS +++R+ IA +V +P+I+ DEPT LD +M ++ I G T
Sbjct: 131 RALP--AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1021 IVCTIHQPSI 1030
+V H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-19
Identities = 62/214 (28%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 900
+L +++ PG A+VG SG+GK+TL+ +L G +G I + G +
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDGVDLNDIDLASL 545
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R GY Q+ LFS +R I L A EE++E +L +
Sbjct: 546 RRQVGYVLQDP-----------FLFSGSIR--ENIALGNPEATDEEIIEAAQLAGAHEFI 592
Query: 961 IGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
LP G LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 593 ENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNL 652
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
I GRT++ H+ S S D ++ + +G
Sbjct: 653 LQI-LQGRTVIIIAHRLS--TIRSADRIIVLDQG 683
|
Length = 709 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 5e-19
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 36/213 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L +++ G + AL G +GAGKTTL +LAG +++ G I + +R+++
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKS-- 72
Query: 902 RISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL------- 953
GY Q+ D +V E LL E++ ++A E V++ ++L
Sbjct: 73 --IGYVMQDVDYQLFTDSVREELLLGL-----KELDAGNEQA--ETVLKDLDLYALKERH 123
Query: 954 -TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
SLSG Q++RL IA L++ ++ DEPTSGLD + V +R
Sbjct: 124 PLSLSGG-------------QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIR 170
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+ ++ H + + D +L + G
Sbjct: 171 ELAAQGKAVIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 85.1 bits (212), Expect = 6e-19
Identities = 55/212 (25%), Positives = 87/212 (41%), Gaps = 61/212 (28%)
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
VL+D V++T +PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 17 VLKD-----VSLT--IKPGEKVAIVGPSGSGKSTLLKLLLRLYD--PTSGEILIDGVDLR 67
Query: 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL 953
E+ + Y Q + LFS T + E
Sbjct: 68 DLDLESLRKNIAYVPQ-----------DPFLFSG-----------T-------IRE---- 94
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
N LS QR+R+ IA L+ +P I+ +DE TS LD A+++ +R
Sbjct: 95 -------------NILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA 141
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+T++ H+ S D ++ + G
Sbjct: 142 LAK-GKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 1e-18
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 16/194 (8%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR 896
++L + A G + AL+G +GAGK+TL+ L G R G + D Y ++
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 897 QETFARIS-GYCEQN---DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G Q+ + + V + + F SE E+ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEV---ERRVREALTAVG 116
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
+ L LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 117 ASGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILR 171
Query: 1013 NIVNTGRTIVCTIH 1026
+ G T+V + H
Sbjct: 172 RLRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-18
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 26/228 (11%)
Query: 829 PVELKQEGVL---EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
P+E+ E + D L ++ + G LTALVG SGAGK+TL+++L G +
Sbjct: 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQ 375
Query: 886 GDIYISGYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
G+I ++G R E + + + QN G T+ E++L + EI
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPDASDEEII------ 428
Query: 943 FVEEVMELVELTSLSGALIGLPGI-----NGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
++ L GL + GLS Q +RL +A L++ S++ +DEPT+
Sbjct: 429 ---AALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTA 485
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LDA I+++ ++ + +T++ H+ D ++ + G
Sbjct: 486 HLDAETEQIILQALQEL-AKQKTVLVITHRLE--DAADADRIVVLDNG 530
|
Length = 559 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 8e-18
Identities = 59/216 (27%), Positives = 107/216 (49%), Gaps = 16/216 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQE 898
++Q + +V+ G +T L+G +GAGKTTL+ ++A G + I G R
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDP 70
Query: 899 TFAR--ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+F R I + +++ LT E+L + A L S E++ A + E+ + ++L
Sbjct: 71 SFVRRKIGVLFGERGLYAR-LTARENLKYFARLNGLSRKEIK---ARIAELSKRLQLLEY 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+G ST ++++ IA LV +PSI+ +DEPTSGLD R ++ + N
Sbjct: 127 LDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN 181
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
GR ++ + H ++ D ++ + + GE++ G
Sbjct: 182 EGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 9e-18
Identities = 61/225 (27%), Positives = 105/225 (46%), Gaps = 25/225 (11%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 899
Q L +V G + A++G SGAGK+TL+ L G +G I+ + I+ ++
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 900 FARIS-GYCEQNDIHSPGLTVLESLLF------SAW---LRLPSEIELETQRAFVEEVME 949
R G Q P L+VLE++L S W L S+ + +A + +E
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSK--EDKAQAL--DALE 133
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
V + + LS Q++R+ IA LV P I+ DEP + LD +A VM
Sbjct: 134 RVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMD 188
Query: 1010 TVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+++I G T++ +HQ +D+ + + + + + G +++ GP
Sbjct: 189 ILKDINQEDGITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 33/196 (16%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQ------ 897
+V+ RPG + L+G +GAGKTTL +++ G + + G +I I+G P +
Sbjct: 22 DVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL--------FSAWLRLPSEIELETQ-RAFVEEV 947
TF Q PGLTVLE++ S L P + E + R E+
Sbjct: 82 ARTF--------QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL 133
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+E V L L+ G LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 134 LEFVGLGELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEEL 188
Query: 1008 MRTVRNI-VNTGRTIV 1022
+R + G TI+
Sbjct: 189 AELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-17
Identities = 55/187 (29%), Positives = 82/187 (43%), Gaps = 18/187 (9%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L ++ G L G +G+GKTTL+ ++AG G I+ D P E
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACH 76
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ +N + P LTV E+L F W L + + +E V L L
Sbjct: 77 YLG---HRNAMK-PALTVAENLEF--WAAF-----LGGEELDIAAALEAVGL----APLA 121
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R + G +
Sbjct: 122 HLPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIV 180
Query: 1022 VCTIHQP 1028
+ H P
Sbjct: 181 IAATHIP 187
|
Length = 207 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 3e-17
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 24/210 (11%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L ++ + +PG A+VG +GAGKTTL+++L +G I I G R + +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD--PQKGQILIDGIDIRDISRKSL- 75
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
++ I G+ + ++ LFS + I L A EEV+E + ++ LP
Sbjct: 76 ----RSMI---GVVLQDTFLFSGTIM--ENIRLGRPNATDEEVIEAAKEAGAHDFIMKLP 126
Query: 965 ---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS +R+ L IA ++ +P I+ +DE TS +D ++ + ++
Sbjct: 127 NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM 186
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
GRT + H+ S I + D++L + G
Sbjct: 187 K-GRTSIIIAHRLST-IKNA-DKILVLDDG 213
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-17
Identities = 67/277 (24%), Positives = 110/277 (39%), Gaps = 60/277 (21%)
Query: 129 NMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M + L + GNR +L+D+S + +T L+GP +GK+TLL A+ G L
Sbjct: 1 MMPMIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS 57
Query: 189 LQVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDM 245
SG+I G ++ YV Q+ D +TV++ +
Sbjct: 58 ---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVV--------------- 98
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L R K F +K V+ ++ +G++ D +G+
Sbjct: 99 --LLGRYGK-------------KGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE---- 139
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVI 362
+SGGQK+R+ L +L +DE G+D + Y ++K L+ +G TV+
Sbjct: 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-----EGKTVL 193
Query: 363 SL---LQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ L FD VI L ++ GP VL
Sbjct: 194 MVTHDLGLVM---AYFDRVICL-NRHLIASGPPEEVL 226
|
Length = 254 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 5e-17
Identities = 54/202 (26%), Positives = 90/202 (44%), Gaps = 24/202 (11%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPK 895
R L V+ PG ALVG SGAGK+TL+++L G G I + ++
Sbjct: 332 PGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADAD- 390
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+++ + Q+ G T+ E++ + + A + E +E L
Sbjct: 391 -ADSWRDQIAWVPQHPFLFAG-TIAENIRLA---------RPDASDAEIREALERAGLDE 439
Query: 956 LSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
AL IG G GLS Q +RL +A + + ++ +DEPT+ LDA A V+
Sbjct: 440 FVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVL 498
Query: 1009 RTVRNIVNTGRTIVCTIHQPSI 1030
+R + GRT++ H+ ++
Sbjct: 499 EALRALAQ-GRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 64/260 (24%), Positives = 103/260 (39%), Gaps = 63/260 (24%)
Query: 140 IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199
Y+ +DDLS + + LLG +GKTT L L G SG NG
Sbjct: 9 TYKKGTK--PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGE---LRPTSGTAYING 63
Query: 200 HGFKEFVPPRTSA-----YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254
+ R +A Y Q D E+TVRE L F + +G+
Sbjct: 64 Y---SIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGL--------------- 105
Query: 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314
P ++ VE ++++LGL A+ +SGG K++
Sbjct: 106 -----PKSEIK--------------EEVELLLRVLGLTDKANKRART-----LSGGMKRK 141
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----SLLQPAPE 370
L+ L+G VL +DE ++GLD ++ I + + G ++I S+ E
Sbjct: 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK---GRSIILTTHSMD----E 194
Query: 371 AYELFDDVILLSEGQIVYQG 390
A L D + ++S+G++ G
Sbjct: 195 AEALCDRIAIMSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 7e-17
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 14/177 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQN 910
+ G L+G +GAGKTT + +L G G I + G P + AR G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRVGVVPQF 88
Query: 911 DIHSPGLTVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
D P TV E+LL F + L + RA V ++E +L + + A +G L
Sbjct: 89 DNLDPDFTVRENLLVFGRYFGLSAA----AARALVPPLLEFAKLENKADAKVG-----EL 139
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+++ G+TI+ T H
Sbjct: 140 SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 1e-16
Identities = 49/182 (26%), Positives = 83/182 (45%), Gaps = 27/182 (14%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
+ G + +G +GAGKTT M ++ G + G I Y K E RI
Sbjct: 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEALRRIGAL---- 77
Query: 911 DIHSPG----LTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
I +PG LT E+L A L + + ++EV+++V L + +
Sbjct: 78 -IEAPGFYPNLTARENLRLLARLLGIRKKR--------IDEVLDVVGLKDSAKKKVK--- 125
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
G S ++RL IA+ L+ NP ++ +DEPT+GLD + + ++ + G T++ +
Sbjct: 126 --GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISS 183
Query: 1026 HQ 1027
H
Sbjct: 184 HL 185
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 6/100 (6%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGH 200
K +L+++SG ++P LT L+G +GKTTLL LAGR G ++G+I NG
Sbjct: 15 VKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV---ITGEILINGR 71
Query: 201 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240
+ R++ YV QQD +TVRE L F+ +G+
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLS 110
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 2e-16
Identities = 73/271 (26%), Positives = 114/271 (42%), Gaps = 57/271 (21%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SG 193
+ L G + ILDDLS I +T +LGP SGK+TLL LAG L+ SG
Sbjct: 5 VENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAG----LLKPKSG 57
Query: 194 KITYNGH-----GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
++ +G KE + AYV Q +TV E +
Sbjct: 58 EVLLDGKDIASLSPKELA--KKLAYVPQSPSAPFGLTVYELV------------------ 97
Query: 249 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308
+ G P + F ++ +VE +++LGL+ AD V + +S
Sbjct: 98 ------LLGRYP------HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LS 140
Query: 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSST---TYQIIKYLKHSTRALDGTTVISLL 365
GG+++R+ L +L +DE ++ LD + ++++ L G TV+ +L
Sbjct: 141 GGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK----GLTVVMVL 196
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
A D +ILL +G+IV QG VL
Sbjct: 197 HDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 3e-16
Identities = 63/213 (29%), Positives = 101/213 (47%), Gaps = 18/213 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----K 895
L +++ + G L AL+G SGAGK+TL+ ++AG +T G I ++G
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD--AGRIRLNGRVLFDVS 70
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVMELVEL 953
R G+ Q+ P +TV +++ F +R PSE E RA VEE++ LV+L
Sbjct: 71 NLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAE---IRARVEELLRLVQL 127
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
L+ LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 128 EGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182
Query: 1014 IV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G T V H + E D ++ + +G
Sbjct: 183 LHDRLGVTTVFVTHDQE-EALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 3e-16
Identities = 57/213 (26%), Positives = 94/213 (44%), Gaps = 30/213 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV+ R G A++G G+GK+TL+ +LAG G + + G RQ A +
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT--SGSVLLDGTDIRQLDPADLR 77
Query: 905 ---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
GY Q + LF LR I L A E ++ EL ++ +
Sbjct: 78 RNIGYVPQ-----------DVTLFYGTLR--DNITLGAPLADDERILRAAELAGVTDFVN 124
Query: 962 GLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
P GLS QR+ + +A L+ +P I+ +DEPTS +D + + +R
Sbjct: 125 KHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLR 184
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ +T++ H+PS+ + D ++ M G
Sbjct: 185 QLL-GDKTLIIITHRPSLL--DLVDRIIVMDSG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 3e-16
Identities = 60/220 (27%), Positives = 96/220 (43%), Gaps = 22/220 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------P 894
+L V R G + A++G SG+GK+TL+ ++ G R G ++ I G
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG----EVLIDGEDISGLSE 69
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G Q+ LTV E++ F LR + + E R V E +E V L
Sbjct: 70 AELYRLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGL- 126
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
GA P LS +KR+ +A L +P ++ DEPT+GLD A+ ++ +R++
Sbjct: 127 --RGAEDLYPA--ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182
Query: 1015 VNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T + H F D + + G+++ G
Sbjct: 183 KKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 3e-16
Identities = 54/214 (25%), Positives = 86/214 (40%), Gaps = 36/214 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 904
+T + G SGAGK+TL+ +AG + GG I G + P +Q R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ----RKI 77
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
G Q P L V E+L F + E R V+E+++L+ L L
Sbjct: 78 GLVFQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLLGLDHLLNR----- 127
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
LS +++R+ +A L A P ++ +DEP S LD ++ ++ I
Sbjct: 128 YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-------N 180
Query: 1025 IHQPSIDIFESFDEL------LFMKRGGELIYAG 1052
++ P I + E + + G L Y G
Sbjct: 181 LNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 4e-16
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 51/204 (25%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L NV+ + PG A++G SG+GK+TL ++ G R T G +
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV----------------- 59
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R+ G DI L V + + EL SG++
Sbjct: 60 RLDGA----DISQWDPNEL--------------------GDHVGYLPQDDEL--FSGSIA 93
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
N LS QR+RL +A L NP I+ +DEP S LD + + + + G T
Sbjct: 94 E----NILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149
Query: 1022 VCTIHQPSIDIFESFDELLFMKRG 1045
+ H+P S D +L ++ G
Sbjct: 150 IVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 4e-16
Identities = 57/178 (32%), Positives = 82/178 (46%), Gaps = 16/178 (8%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP--KRQETFARISGYCE 908
R G + +G +GAGKTT + +L R T G ++GY + R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
Q LT E+L L + E E +RA EE++EL EL + +G
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAE-ERA--EELLELFELGEAADRPVG-----T 124
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G TI+ T H
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-16
Identities = 62/221 (28%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 896
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +R
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQR--AFVEEVMELVE 952
AR EQ+ + LTV + + R+P S ++ A V+ + E
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALG---RIPHRSLWAGDSPHDAAVVDRALARTE 126
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+ L+ ++ LS +R+R+ +A L P ++ +DEPT+ LD RA + VR
Sbjct: 127 LSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVR 181
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ TG T+V +H +++ S+ + + + GG ++ AGP
Sbjct: 182 ELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGP 220
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 6e-16
Identities = 56/203 (27%), Positives = 98/203 (48%), Gaps = 18/203 (8%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCEQ 909
PG +T L+G +GAGKTT + +LAG G + G+ +E R G+
Sbjct: 30 PGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKEPAEARRRLGFVSD 85
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
+ LT E+L + A L ++ + A +EE+ + + + L +G G
Sbjct: 86 STGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GF 137
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
ST R+++ IA LV +P ++ +DEPT+GLD A + +R + G+ I+ + H
Sbjct: 138 STGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ 197
Query: 1030 IDIFESFDELLFMKRGGELIYAG 1052
++ D ++ + R G ++Y G
Sbjct: 198 -EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 7e-16
Identities = 57/206 (27%), Positives = 97/206 (47%), Gaps = 22/206 (10%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 903
+++ + G L+G SG GKTTL+ ++AG + + G I I+ P + R
Sbjct: 23 DISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK----RP 78
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G Q+ P +TV E++ F L++ +++ +A VEE +ELV L +
Sbjct: 79 IGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRKP-- 134
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIV 1022
+ LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T V
Sbjct: 135 ---HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFV 191
Query: 1023 CTIHQPSIDIFESF---DELLFMKRG 1045
H D E+ D + M G
Sbjct: 192 YVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 8e-16
Identities = 59/217 (27%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFA 901
L +V+ RPG AL+G +GAGK+TL +L EG I ++G+ R+ A
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ--EGQISVAGHDLRRAPRAALA 74
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ +Q + L+V ++L + A L L RA + E++ + L +
Sbjct: 75 RLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRA----EARARIAELLARLGLAERADDK 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR + G
Sbjct: 130 VR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056
+++ H +D E+ D L+ + R G ++ G
Sbjct: 185 SVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAAE 218
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 8e-16
Identities = 63/193 (32%), Positives = 91/193 (47%), Gaps = 25/193 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G ALVG SG GK+TL+ ++AG R T G++ + G P R GY Q
Sbjct: 28 EEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLVDGEPVTGPGPDR--GYVFQQ 81
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
D P LTVL+++ L+ + E E EL+EL LSG P LS
Sbjct: 82 DALLPWLTVLDNVALGLELQGVPKAEAR------ERAEELLELVGLSGFENAYPH--QLS 133
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPS 1029
R+R+ +A L +P ++ +DEP S LDA + + +I TG+T++ H
Sbjct: 134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTH--- 190
Query: 1030 IDIFESFDELLFM 1042
DI DE +F+
Sbjct: 191 -DI----DEAVFL 198
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 9e-16
Identities = 56/202 (27%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY------PKRQETFARISG 905
G L+G SG GK+TL+ ++AG + G+I I G P+++
Sbjct: 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGI-----A 78
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
QN P +TV E++ F L+L + E + V+EV +L+ L L
Sbjct: 79 MVFQNYALYPHMTVYENIAFG--LKLRGVPKAEIDKR-VKEVAKLLGLEHLLNRKP---- 131
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVC 1023
LS QR+R+ +A LV P + +DEP S LDA+ ++MR+ ++ G T +
Sbjct: 132 -LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK-LRVLMRSEIKKLHERLGTTTIY 189
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
H ++ D ++ M G
Sbjct: 190 VTHDQ-VEAMTLADRIVVMNDG 210
|
Length = 338 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 63/267 (23%), Positives = 101/267 (37%), Gaps = 48/267 (17%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---GHHLQV 191
L R L D+S I LL+GP SGK+TLL L G L + V
Sbjct: 6 AENLSFRYPGRKA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 192 SGKITYNGHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G T + E + V Q D Q+ TV + + F + G+
Sbjct: 64 DGLDTSSEKSLLELR--QKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL----------- 110
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
RE+I V ++++GL+ D + SGG
Sbjct: 111 PREEIEER-----------------------VAEALELVGLEELLDRPPFNL-----SGG 142
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
QK+R+ +L +L +DE + GLD ++++ LK + G T+I +
Sbjct: 143 QKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKK-LKEEGGKTIIIVTHDLEL 201
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVLD 397
E D V++L +G+I+ G + +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 2e-15
Identities = 61/247 (24%), Positives = 93/247 (37%), Gaps = 42/247 (17%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
SK+ + D+S +T LLG +GKTTLL +A L
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-------------------- 52
Query: 206 VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+P + D VR + G G Y +T AR E+L
Sbjct: 53 IPDSGKVTIDGVDTVRDPSFVRRKI---GVLFGERGLYARLT--AR----------ENLK 97
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
F + L ++ + + K L L D VG S G K+++ LV
Sbjct: 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDP 152
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
+L +DE ++GLD T + ++K +G VI E L D VI+L +G+
Sbjct: 153 SILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGE 210
Query: 386 IVYQGPR 392
+V +G
Sbjct: 211 VVLEGSI 217
|
Length = 245 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 56/187 (29%), Positives = 86/187 (45%), Gaps = 21/187 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF---A 901
V+ R G + L+G +GAGKTT + +L + T G ++G+ +E
Sbjct: 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRR 73
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGAL 960
RI G Q+ LT E+L A L +P +R ++E+++ V L + L
Sbjct: 74 RI-GIVFQDLSVDDELTGWENLYIHARLYGVPGAER--RER--IDELLDFVGLLEAADRL 128
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ S R+RL IA LV P ++F+DEPT GLD + A V + + G
Sbjct: 129 VK-----TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGM 183
Query: 1020 TIVCTIH 1026
TI+ T H
Sbjct: 184 TILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 63/217 (29%), Positives = 109/217 (50%), Gaps = 26/217 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----KRQETFAR 902
+V+ G +T+++G +GAGK+TL+ + R G+I I G +E +
Sbjct: 19 DVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLK-KDSGEITIDGLELTSTPSKELAKK 76
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQ-RAFVEEVMELVELTSLSGAL 960
+S ++N I+S LTV + + F R P S+ L + R + E +E + L LS
Sbjct: 77 LSILKQENHINSR-LTVRDLVGFG---RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRY 132
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GR 1019
+ + LS QR+R IA+ L + V +DEP + LD + + +M+ +R + + G+
Sbjct: 133 L-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGK 187
Query: 1020 TIVCTIHQPSIDI-FESF--DELLFMKRGGELIYAGP 1053
TIV +H DI F S D ++ +K G+++ G
Sbjct: 188 TIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 3e-15
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 29/177 (16%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARISGYCE 908
+ G LVG SG+GK+TL + G + T G I +G + + ++ +
Sbjct: 29 KKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVF 88
Query: 909 QNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---------LS 957
Q+ + S P +T+ E + + + E ++ V ++ V L LS
Sbjct: 89 QDPMSSLNPRMTIGEQIAEPLRIHGKLSKK-EARKEAVLLLLVGVGLPEEVLNRYPHELS 147
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
G G QR+R+ IA L NP ++ DEPTS LD A ++ ++ +
Sbjct: 148 G---------G----QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKL 191
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 57/238 (23%), Positives = 102/238 (42%), Gaps = 29/238 (12%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+ELK V + ++L +++ PG A+VG +GAGKTTL+ +L G GD+
Sbjct: 32 IELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVT 89
Query: 890 ISGYPKRQETF-----ARISGYC--EQNDIHSPGLTVLESLLFSAW------LRLPSEIE 936
+ G + RI G E ++ TV + +L S + +
Sbjct: 90 LLGRRFGKGETIFELRKRI-GLVSSELHERFRVRETVRDVVL-SGFFASIGIYQEDLT-- 145
Query: 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
A + ++EL+ L+ G LS +++R+ IA LV +P ++ +DEP
Sbjct: 146 -AEDLAAAQWLLELLGAKHLADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPA 199
Query: 997 SGLDARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
GLD A ++ + + + ++ H +I F L + + GE++ G
Sbjct: 200 QGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRL-LLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 6e-15
Identities = 59/201 (29%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP---KRQE 898
L V+ PG A++G SG+GK+TL+ LAG +++ G++ + G P Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAG-----LLDPLQGEVTLDGVPVSSLDQD 405
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R C Q D H TV E+L + A EE+ +E L+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRLAR------------PDATDEELWAALERVGLAD 452
Query: 959 ALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
L LP GL T +R+RL +A L+A+ I+ +DEPT LDA A +
Sbjct: 453 WLRALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADEL 510
Query: 1008 MRTVRNIVNTGRTIVCTIHQP 1028
+ + +GRT+V H
Sbjct: 511 LEDLLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 6e-15
Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 21/195 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQET 899
+LL V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLP--SEIELETQRAFVEEVMELVELTSLS 957
AR QN + TV E + R+P S E E + + +L+ L+
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMG---RIPHRSGREPEEDERIAAQALAATDLSGLA 129
Query: 958 GALIGLPGINGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTV 1011
G LS +++R+ +A L V + +F+DEPTS LD +R
Sbjct: 130 GRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLA 184
Query: 1012 RNIVNTGRTIVCTIH 1026
R + G ++ +H
Sbjct: 185 RQLAREGGAVLAVLH 199
|
Length = 259 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 18/200 (9%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 894
E L +L V + G A+VG SG+GK+TL+ VLAG G++ + G P
Sbjct: 20 EGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS--SGEVRLLGQPLHKL 77
Query: 895 ---KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
R AR G+ Q+ P LT LE++ LP E+ E+ L+
Sbjct: 78 DEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESSADSRAGAKALL 131
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
E L L P LS +++R+ +A P ++F DEPT LD + +
Sbjct: 132 EAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 1012 RNIV-NTGRTIVCTIHQPSI 1030
+ G T+V H P +
Sbjct: 190 FALNRERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 54/186 (29%), Positives = 84/186 (45%), Gaps = 12/186 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 901
L +V+ G L G SGAGK+TL+ ++ G R T G I+ +S R+ F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R G Q+ P TV E++ P + + R V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVAL------PLRVIGKPPREIRRRVSEVLDLVGLKHKA 131
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LP + LS +++R+ IA +V P+++ DEPT LD + +MR I G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1021 IVCTIH 1026
++ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 68/247 (27%), Positives = 102/247 (41%), Gaps = 52/247 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
LDDLS + P LLGP GKTTLL +AG L+ SG+I +G V
Sbjct: 14 RALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAG-----LERPDSGEILIDGRDVTG-V 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R V Q +TV E + F + +GV E+ R
Sbjct: 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKA-----EIRAR------------ 110
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V +++++GL+ + +SGGQ++R+ L
Sbjct: 111 -----------------VRELLELVGLEGLLNRYPH-----ELSGGQQQRVALARALARE 148
Query: 325 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE +S LD+ ++ + LK R L G T I + EA L D + +++E
Sbjct: 149 PSLLLLDEPLSA-LDAKLREELREELKELQREL-GITTIYVTHDQEEALALADRIAVMNE 206
Query: 384 GQIVYQG 390
G+IV G
Sbjct: 207 GRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 21/195 (10%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 899
L +++ G +TAL+G SG GK+TL+ +L G EG++ + G
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 900 FARIS-----GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+ G Q N ++ +++ + L E +R VEE +
Sbjct: 74 VDVLELRRRVGMVFQKPNPFP---GSIYDNVAYGLRLHGIKLKEELDER--VEEALRKAA 128
Query: 953 LT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L + L L GLS Q++RL +A L P ++ +DEPTS LD + A + +
Sbjct: 129 LWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELI 184
Query: 1012 RNIVNTGRTIVCTIH 1026
+ TIV H
Sbjct: 185 AEL-KKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-14
Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 29/182 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARI 903
+V+ R G LVG SG+GK+TL +LAG + G I + R
Sbjct: 309 DVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRR 368
Query: 904 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 954
Q+ S P +TV + L LR+ +RA V E++ELV L
Sbjct: 369 IQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEFLDRY 426
Query: 955 --SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LSG QR+R+ IA L P ++ +DEP S LD A V+ ++
Sbjct: 427 PHELSGG-------------QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLK 473
Query: 1013 NI 1014
++
Sbjct: 474 DL 475
|
Length = 539 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 3e-14
Identities = 52/173 (30%), Positives = 77/173 (44%), Gaps = 17/173 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G A++G SG GK+TL+ ++AG + T G + D P GY Q
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQE 80
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
D P LTVL+++ LR S+ E E EL+EL L+G P LS
Sbjct: 81 DALLPWLTVLDNVALGLELRGKSKAEAR------ERAKELLELVGLAGFEDKYPH--QLS 132
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIV 1022
R+R+ IA L P ++ +DEP LDA + + + T +T++
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 6e-14
Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 19/189 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ--ET 899
L +++ G + G +GAGKTTL+ +LAG R G++Y G P + E+
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD----AGEVYWQGEPIQNVRES 72
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + Y LT LE+L F W R T + E + V L L
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEALAQVGLAGL--- 123
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
LP + LS Q++R+ +A ++ + +DEP + LD A++ + G
Sbjct: 124 -EDLP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGG 181
Query: 1020 TIVCTIHQP 1028
++ T HQP
Sbjct: 182 IVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-14
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
QEG L+ ++L V+ + G + A+VG SG+GK+TL+ +L G G++ +G
Sbjct: 12 QEGKLD--TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQ 67
Query: 894 PKRQETFARIS-------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
+ + + G+ Q P T LE++ + S E + +RA
Sbjct: 68 SLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAK-ERA---- 122
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
E++E L + P LS +R+R+ IA LV PS+V DEPT LD A I
Sbjct: 123 -YEMLEKVGLEHRINHRPS--ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179
Query: 1007 V---MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+ M + +NT +V H ++ + D +L MK G
Sbjct: 180 IFDLMLELNRELNTSFLVV--THDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 1e-13
Identities = 67/215 (31%), Positives = 100/215 (46%), Gaps = 26/215 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYP-KRQETFAR-------ISG 905
G + AL+G SG+GK+TL+ L+G TG I + G +R+ AR +G
Sbjct: 30 GEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTG 89
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSG 958
Y Q L+VLE++L A P + QRA L LT +
Sbjct: 90 YIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRA-------LQALTRVGM 142
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 1017
++ LS Q++R+ IA L+ ++ DEP + LD +A IVM T+R+I N
Sbjct: 143 VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND 202
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G T+V T+HQ +D + E + R G + Y G
Sbjct: 203 GITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 29/214 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L V+ RPG + AL+G +GAGK+TLM +L+G G+I I G P
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKP------VA 73
Query: 903 ISGYCEQND-----IH-----SPGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELV 951
S + +H P L+V E++ I+ + R E++ +
Sbjct: 74 FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARL 133
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L L+G LS QR+ + IA L + ++ +DEPT+ L + + +
Sbjct: 134 GLDIDPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLI 188
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
R + G I+ H+ ++FE D + ++ G
Sbjct: 189 RRLKAQGVAIIYISHRLD-EVFEIADRITVLRDG 221
|
Length = 500 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 1e-13
Identities = 45/191 (23%), Positives = 79/191 (41%), Gaps = 16/191 (8%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
L ++ G + G +G GKTTL+ +LAG R G + + + +++
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNG--TALAEQR 68
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+ R Y P L+ LE+L F W + + +E+ + V LT
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAI-----HGGAQRTIEDALAAVGLTGFE 121
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 DLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1018 GRTIVCTIHQP 1028
G ++ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-13
Identities = 60/219 (27%), Positives = 98/219 (44%), Gaps = 30/219 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ +L +++ + PG A+VG SG+GK+TL+ +L G+I I G R
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGIDIRDI 396
Query: 899 TFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ + G Q + LLFS +R I L A EE+ E ++L +
Sbjct: 397 SLDSLRKRIGIVSQ-----------DPLLFSGTIR--ENIALGRPDATDEEIEEALKLAN 443
Query: 956 LSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
+ LP LS QR+RL IA L+ NP I+ +DE TS LD A+
Sbjct: 444 AHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEAL 503
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ ++ ++ GRT + H+ S ++ D ++ + G
Sbjct: 504 IQDALKKLLK-GRTTLIIAHRLS--TIKNADRIIVLDNG 539
|
Length = 567 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 58/215 (26%), Positives = 103/215 (47%), Gaps = 24/215 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI-----SGYPK 895
R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ + EG + + G +
Sbjct: 17 RKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASE 74
Query: 896 RQETFARIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
++ R + GY Q N + LT +++ + L L + + R ++E V
Sbjct: 75 KELVQLRRNIGYIFQAHNLLGF--LTARQNVQMA--LELQPNLSYQEARERARAMLEAVG 130
Query: 953 LTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
L G + P + LS Q++R+ IA LV P +V DEPT+ LD+++ V+ +
Sbjct: 131 L----GDHLDYYP--HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELM 184
Query: 1012 RNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + G TI+ H I + D ++ M+ G
Sbjct: 185 QKLAREQGCTILIVTHDNR--ILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-13
Identities = 54/177 (30%), Positives = 89/177 (50%), Gaps = 16/177 (9%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARIS-GYCEQND 911
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 912 IHSPGLTVLESLL-FSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
TV E+LL F + + + EIE A + ++E L S + A + L
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMSTREIE-----AVIPSLLEFARLESKADARVSD-----L 173
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 174 SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-13
Identities = 66/222 (29%), Positives = 99/222 (44%), Gaps = 38/222 (17%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKR 896
+V+ PG + +VG SG+GKTTL+ ++GR G + D+Y +R
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 897 QETFARIS-GYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
+ R G+ QN S G + E L+ + R I RA ++ +E
Sbjct: 84 R-RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLM-AIGARHYGNI-----RAEAQDWLE 136
Query: 950 LVELTSLSGALIGLPGINGL----STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
VE I L I+ L S ++RL IA LV P +VFMDEPT GLD A
Sbjct: 137 EVE--------IDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 1006 IVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ +R +V G +V H ++ + D L+ MK+G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQGQ 229
|
Length = 258 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-13
Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 17/175 (9%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K G E L +L V + G AL+G SG+GK+TL+ +LAG G G++ + G
Sbjct: 14 KSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS--SGEVSLVG 71
Query: 893 YP-------KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
P R + A+ G+ Q+ + P L LE++ A LR S +
Sbjct: 72 QPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAK--- 128
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L+E L L LP LS +++R+ +A P ++F DEPT LD
Sbjct: 129 ---ALLEQLGLGKRLDHLPA--QLSGGEQQRVALARAFNGRPDVLFADEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 2e-13
Identities = 53/177 (29%), Positives = 83/177 (46%), Gaps = 21/177 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARIS---GY 906
G + AL+G +GAGKTTL+ + G ++G I I+G P R GY
Sbjct: 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLP----PHERARAGIGY 79
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPG 965
+ P LTV E+LL A+ R ++ +A +E V EL L L G
Sbjct: 80 VPEGRRIFPELTVEENLLLGAYARRRAKR-----KARLERVYELFPRLKERRKQLAGT-- 132
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
LS +++ L IA L++ P ++ +DEP+ GL + + +R + + G TI+
Sbjct: 133 ---LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 2e-13
Identities = 59/181 (32%), Positives = 90/181 (49%), Gaps = 22/181 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS------GY 906
RPG L+GV+GAGKTT +L G T + GD ++G + IS GY
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAG----KSILTNISDVHQNMGY 2016
Query: 907 CEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
C Q D LT E L A LR +P+E E ++ + L L+ + L G
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAE---EIEKVANWSIQSL-GLSLYADRLAGT-- 2070
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
S +++L+ A+ L+ P +V +DEPT+G+D +A ++ T+ +I+ GR +V T
Sbjct: 2071 ---YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
Query: 1026 H 1026
H
Sbjct: 2128 H 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 3e-13
Identities = 60/254 (23%), Positives = 98/254 (38%), Gaps = 57/254 (22%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF- 205
K+ L +S + + LLG +GKTTLL + G + SG+I ++G ++
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDG---EDIT 68
Query: 206 -VPP--RTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 259
+PP R AYV + +TV E L R ++
Sbjct: 69 GLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGA-------------YARRDKEAQERD 115
Query: 260 PDEDLDIF--MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
+E ++F +K + A TL SGG+++ L
Sbjct: 116 LEEVYELFPRLKER-------------------RNQRAGTL---------SGGEQQMLAI 147
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
L+ ++L +DE S GL +I + +K R G T++ + Q A A E+ D
Sbjct: 148 ARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE-LRKEGGMTILLVEQNARFALEIADR 206
Query: 378 VILLSEGQIVYQGP 391
+L G+IV G
Sbjct: 207 GYVLENGRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 3e-13
Identities = 58/206 (28%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KR 896
D +L N++ +PG + +VG SG+GK+TL ++ G + + G+
Sbjct: 13 DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE--NGRVLVDGHDLALAD 70
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G Q E++LF+ +R I L +E V +E L
Sbjct: 71 PAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERV---IEAAKL 114
Query: 957 SGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
+GA ++G G GLS QR+R+ IA L+ NP I+ DE TS LD +
Sbjct: 115 AGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYES 173
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+MR + +I GRT++ H+ S
Sbjct: 174 EHAIMRNMHDIC-AGRTVIIIAHRLS 198
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 58/210 (27%), Positives = 97/210 (46%), Gaps = 13/210 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKR 896
L +V+ G L AL+G SG+GKTTL+ ++AG + +G I+ G + P +
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ R G+ Q+ +TV +++ F LR+ E + +V EL++L L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQL 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
P LS QR+R+ +A L P ++ +DEP LDA+ + R +R + +
Sbjct: 127 DWLADRYP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD 184
Query: 1017 -TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
T V H + E D ++ M +G
Sbjct: 185 ELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 46/198 (23%), Positives = 88/198 (44%), Gaps = 25/198 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETFARIS-GYCEQ 909
G + A++G SG+GK+TL++++ + G + G K+ F R GY Q
Sbjct: 24 GKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASKFRREKLGYLFQ 83
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG---- 965
N TV E+L ++ L+ ++ +E E + +GL
Sbjct: 84 NFALIENETVEENL----------DLGLKYKKLSKKEKREKKKEALEK---VGLNLKLKQ 130
Query: 966 -INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
I LS +++R+ +A ++ P ++ DEPT LD + V+ + + + G+TI+
Sbjct: 131 KIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIV 190
Query: 1025 IHQPSIDIFESFDELLFM 1042
H P + + D ++ +
Sbjct: 191 THDPE--VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 6e-13
Identities = 70/273 (25%), Positives = 109/273 (39%), Gaps = 53/273 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFVPP 208
LDD+S I+ L LLGP +GK+TLL +AG +G+I NG +
Sbjct: 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV 74
Query: 209 RTSA--YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R +V Q MTV + + F + + + +E R ++ E L +
Sbjct: 75 RDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-----ERPSEAEIRARVE-----ELLRL 124
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
L G + D +SGGQ++R+ L +
Sbjct: 125 V----QLEG-----------------------LADRYPAQLSGGQRQRVALARALAVEPK 157
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE LD+ ++ ++L+ G T + + EA EL D V++L++G+I
Sbjct: 158 VLLLDEPFGALDAKVRKELRRWLR-KLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRI 216
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
GP V D P + VA FL EV
Sbjct: 217 EQVGPPDEVYDH--------PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 50/204 (24%), Positives = 98/204 (48%), Gaps = 24/204 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQ 909
G + L+G +GAGKTT + ++ G II G++ G P RI GY +
Sbjct: 24 EKGEIFGLLGPNGAGKTTTIRMILG-----IILPDSGEVLFDGKPLDIAARNRI-GYLPE 77
Query: 910 NDIHSPGLTVLESLLFSAWLR--LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
P + V++ L++ A L+ E R ++E +E +EL+ + +
Sbjct: 78 ERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERLELSEYA-----NKRVE 127
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS ++++ ++ +P ++ +DEP SGLD ++ +R + G+T++ + HQ
Sbjct: 128 ELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQ 187
Query: 1028 PSIDIFESF-DELLFMKRGGELIY 1050
+++ E D +L + +G ++Y
Sbjct: 188 --MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 7e-13
Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARIS-GYCEQNDIHSPGL 917
L+G +GAGK+T+ +L G + G I + G P + AR++ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 918 TVLESLL-FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
TV E+LL F + + + E+E + ++E L S + + L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMSTR-EIEA---VIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LT+A L+ +P ++ +DEPT+GLD A ++ +R+++ G+TI+ T H
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-13
Identities = 68/221 (30%), Positives = 103/221 (46%), Gaps = 26/221 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF 900
LL ++ F G +T L+G +G+GK+TL+ +L GR EG+I + P + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL----ETQRAFVEEVMELVELTSL 956
AR Y Q + G+TV E A R P L R VEE + LV L L
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRE---LVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL 140
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTVR 1012
+ L+ + LS +R+R IA+ + + + +DEPTS LD A+V R +
Sbjct: 141 AHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ 195
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T++ +H I++ + + L RGGE+I G
Sbjct: 196 ---ERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 8e-13
Identities = 52/163 (31%), Positives = 83/163 (50%), Gaps = 11/163 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
Q L +V G L AL+G SG+GK+TL+ ++AG + G I ++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 901 A-RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R G+ Q+ LTV +++ F +R + ++ +A VEE++ELV+L L
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKI---KARVEELLELVQLEGLGDR 126
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
P N LS QR+R+ +A L P ++ +DEP LDA+
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 1e-12
Identities = 69/279 (24%), Positives = 107/279 (38%), Gaps = 49/279 (17%)
Query: 116 GSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKT 175
G + L +P + + G +L+DLS I P ++G SGK+
Sbjct: 458 GDKTLIHLPKLQGEIE---FENVSFRYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGSGKS 513
Query: 176 TLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDF 232
TLL L G G+I +G + R YV Q + ++RE +
Sbjct: 514 TLLKLLLGLYKP---QQGRILLDGVDLNDIDLASLRRQVGYVLQDP-FLFSGSIRENIAL 569
Query: 233 AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 292
+ + I E A ++AG E I L
Sbjct: 570 GNP----EATDEEIIEAA---QLAGA--HEF------------------------IENLP 596
Query: 293 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHS 352
DT VG E +SGGQ++RL L+ ++L +DE ++ LD T I++ L
Sbjct: 597 MGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL-- 653
Query: 353 TRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+ L G TVI ++ D +I+L +G+IV QG
Sbjct: 654 -QILQGRTVI-IIAHRLSTIRSADRIIVLDQGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 69/242 (28%), Positives = 96/242 (39%), Gaps = 45/242 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
+ +S +R + LLGP +GKTT + L L SG+ T GH +E R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVR 72
Query: 210 TS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
V Q E+T E L + GV RRE+I DE LD
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGA-------ERRERI-----DELLDFV- 119
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
GL AD LV K SGG ++RL LV VL
Sbjct: 120 ---------------------GLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVL 153
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388
F+DE + GLD T + +Y++ G T++ EA +L D V ++ G+I+
Sbjct: 154 FLDEPTIGLDPQTRAHVWEYIEKLKEE-FGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
Query: 389 QG 390
+G
Sbjct: 213 EG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 50/197 (25%), Positives = 89/197 (45%), Gaps = 16/197 (8%)
Query: 859 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915
++G +G+GK+ L++ +AG +G I+ I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975
+TV +++ + R + E+E +V+E+ E+ + L P LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIE------RKVLEIAEMLGIDHLLNRKPET--LSGGEQQ 136
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
R+ IA LV NP I+ +DEP S LD R + ++ I V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 1036 FDELLFMKRGGELIYAG 1052
D++ M G+LI G
Sbjct: 197 ADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 1e-12
Identities = 58/220 (26%), Positives = 98/220 (44%), Gaps = 41/220 (18%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY-------PKRQETFARIS 904
G + A++G SG+GK+TL+ ++ G R +G+I I G + E R+
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPD----KGEILIDGEDIPQLSEEELYEIRKRM- 87
Query: 905 GYCEQNDIHSPGLTVLESLLFS--AWLRLPSEIELETQRAFVEE-VMELVELTSLSGALI 961
G Q LTV E++ F +LP + + E V+ +EL +
Sbjct: 88 GVLFQQGALFSSLTVFENVAFPLREHTKLP--------ESLIRELVLMKLEL-------V 132
Query: 962 GLPGING------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
GL G LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R +
Sbjct: 133 GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192
Query: 1016 NT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+ G T++ H + D + + G++I G
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 54/206 (26%), Positives = 101/206 (49%), Gaps = 21/206 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYC-E 908
PG + L+G +GAGKTT ++ G ++E G+I +G P QE RI GY E
Sbjct: 26 PPGEIFGLLGPNGAGKTTTFRMILG-----LLEPTEGEITWNGGPLSQEIKNRI-GYLPE 79
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
+ ++ P +TV + L + A L+ + E++ + ++ +E +E+ I
Sbjct: 80 ERGLY-PKMTVEDQLKYLAELKGMPKAEIQKK---LQAWLERLEIVGKKTKKI-----KE 130
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS ++++ ++ P ++ +DEP SGLD ++ + + G TI+ + H+
Sbjct: 131 LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM 190
Query: 1029 SIDIFESFDELLFMKRGGELIYAGPL 1054
+ E D LL +K+ G+ + G +
Sbjct: 191 E-HVEELCDRLLMLKK-GQTVLYGTV 214
|
Length = 300 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 1e-12
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L+ N + +PG ALVG SG+GK+T+ ++AG + G +I G P+ +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPRE 549
Query: 902 RISG---YCEQNDIHSPGLTVLESLLFSAWLR-LP-SEIELETQRAFVEEVMELVELTSL 956
++ +Q DI TV ++L + W +P +++ + A + +V +TS
Sbjct: 550 VLANSVAMVDQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDV-----ITSR 601
Query: 957 SGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
G + G N LS QR+RL IA LV NPSI+ +DE TS LD I+ N
Sbjct: 602 PGGYDAELAEGGAN-LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID---DN 657
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G T + H+ S I + DE++ ++RG
Sbjct: 658 LRRRGCTCIIVAHRLST-IRDC-DEIIVLERG 687
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 35/89 (39%), Positives = 54/89 (60%), Gaps = 4/89 (4%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
L+G+S Q+KRLT G L +LF+DE ++GLDS Y I+++LK A G ++
Sbjct: 106 LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL--ADSGQAILC 163
Query: 363 SLLQPAPEAYELFDDVILLSE-GQIVYQG 390
++ QP+ +E FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 2e-12
Identities = 61/273 (22%), Positives = 98/273 (35%), Gaps = 64/273 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G K IL +S + + LLG +GKTTLL + G SG
Sbjct: 3 VENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMG---LLPPRSGS 56
Query: 195 ITYNGHGFKEFVPPRTS----AYVSQQDWQV-AEMTVRETLDFAGQCQGVGSKYDMITEL 249
I ++G P + YV + ++ E+TV E L
Sbjct: 57 IRFDGRDITGLPPHERARAGIGYV-PEGRRIFPELTVEENLLLGAY-------------- 101
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG--LDTCADTLVGDEMLKGI 307
ARR + + ++F L A TL
Sbjct: 102 ARRRAKRKARLERVYELF-------------------PRLKERRKQLAGTL--------- 133
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVISL 364
SGG+++ L L+ ++L +DE S GL ++ I+ L+ G T++ +
Sbjct: 134 SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE-----GVTILLV 188
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
Q A A E+ D +L G++V +G +L
Sbjct: 189 EQNARFALEIADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 63/206 (30%), Positives = 96/206 (46%), Gaps = 24/206 (11%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGY-P-KRQETF-ARISGYCE 908
G + +G +GAGKTT + +L+G ++ G++ ++G P KR++ F RI
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSG-----LLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFG 101
Query: 909 QNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
Q L V++S A + LP F + + EL EL L L+ P +
Sbjct: 102 QKTQLWWDLPVIDSFYLLAAIYDLP-------PARFKKRLDELSELLDL-EELLDTP-VR 152
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIH 1026
LS QR R IA L+ P I+F+DEPT GLD A + ++ G T++ T H
Sbjct: 153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
Query: 1027 QPSIDIFESFDELLFMKRGGELIYAG 1052
DI E+ + + G L+Y G
Sbjct: 213 YMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 2e-12
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 30/210 (14%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG----YPKRQETFARIS-GY 906
G + AL+G +GAGK+TL GI++ G++ I G Y K+ R + G
Sbjct: 28 GEMVALLGPNGAGKSTLF-----LHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGI 82
Query: 907 CEQN---DIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
QN + +P TV E + F L L E E+E + V E ++ + G
Sbjct: 83 VFQNPDDQLFAP--TVEEDVAFGPLNLGLSKE-EVE------KRVKEALKAVGMEGFENK 133
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
P + LS Q+KR+ IA L P I+ +DEPTSGLD A+ +M+ + ++ G TI+
Sbjct: 134 PP--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ H +D+ + + +++ G++I G
Sbjct: 192 ISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 2e-12
Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 24/216 (11%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
D ++L N+ +PG +VG SG+GK+TL +L T G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ--HGQVLVDGVDLAIA 524
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
A + G+ + E++LFS +R I L A E V+ +L
Sbjct: 525 DPAWLR--------RQMGVVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAGAHD 574
Query: 959 ALIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ LP G N LS QR+R+ IA LV NP I+ DE TS LD + A++MR
Sbjct: 575 FISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMR 634
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+R I GRT++ H+ + + D ++ +++G
Sbjct: 635 NMREICR-GRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 2e-12
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 21/204 (10%)
Query: 853 RPGVLTALVGVSGAGKTTL---MDVLAGRKTGGIIEGDIYISGYP--KRQETFARI---- 903
+PG + A++G SG+GKTTL +++L + G I GDI I +Q+ R
Sbjct: 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQH 86
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G+ QN P TVLE+++ P ++ E + EL+ L+G
Sbjct: 87 VGFVFQNFNLFPHRTVLENIIEG-----PVIVKGEPKEEATARARELLAKVGLAGKETSY 141
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
P LS Q++R+ IA L P ++ DEPTS LD V+ T+R + RT+V
Sbjct: 142 P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVI 199
Query: 1024 TIHQPSI--DIFESFDELLFMKRG 1045
H+ S D+ D +FM +G
Sbjct: 200 VTHEMSFARDV---ADRAIFMDQG 220
|
Length = 250 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 3e-12
Identities = 49/206 (23%), Positives = 73/206 (35%), Gaps = 49/206 (23%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 195
L RG R + LS + +L GP SGKTTLL +AG L +G I
Sbjct: 6 EDLACVRGGR---VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL---PPAAGTI 59
Query: 196 TYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+G + Y+ ++ +TV E L+F
Sbjct: 60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFW---------------------- 97
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
A E+LDI ++ +GL A G +S GQK+R+
Sbjct: 98 AAFLGGEELDI----------------AAALEAVGLAPLAHLPFGY-----LSAGQKRRV 136
Query: 316 TTGELLVGPARVLFMDEISNGLDSST 341
LLV + +DE + LD++
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 74/276 (26%), Positives = 114/276 (41%), Gaps = 56/276 (20%)
Query: 138 LRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVS 192
L + R +R IL DLS I P R+T LLG +GK+TLL ALAG L +V+
Sbjct: 7 LHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVT 63
Query: 193 GKITYNGHGFKEFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G +T NG PR + A + Q + RE + +Y
Sbjct: 64 GDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLG--------RYPH---- 111
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
ARR AG D +I ++ AL G A LVG ++ +SG
Sbjct: 112 ARR---AGALTHRDGEIAWQALALAG-------------------ATALVGRDVTT-LSG 148
Query: 310 GQKKRLTTGELL---------VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
G+ R+ +L P R L +DE + LD + ++++ ++ R +
Sbjct: 149 GELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN-LG 207
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
V++++ A D + +L++G IV G VL
Sbjct: 208 VLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243
|
Length = 272 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-12
Identities = 63/242 (26%), Positives = 105/242 (43%), Gaps = 34/242 (14%)
Query: 830 VELKQ-----EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG 882
+EL+ + L +V+ G + ++G SGAGK+TL+ ++ R T G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 883 --IIEGDIY--ISGYPKRQETFARISGYCEQNDIHSPGL----TVLESLLFSAWLRLPSE 934
++G +S RQ + G Q+ L TV E++ F P E
Sbjct: 62 SVFVDGQDLTALSEAELRQ--LRQKIGMIFQH----FNLLSSRTVFENVAF------PLE 109
Query: 935 IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
+ + + V EL+EL LS P LS Q++R+ IA L NP I+ DE
Sbjct: 110 LAGVPKAEIKQRVAELLELVGLSDKADRYPA--QLSGGQKQRVAIARALANNPKILLCDE 167
Query: 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAG 1052
TS LD ++ +++I G TIV H+ +++ + D + + + G L+ G
Sbjct: 168 ATSALDPETTQSILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEG 224
Query: 1053 PL 1054
+
Sbjct: 225 TV 226
|
Length = 339 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 65.5 bits (161), Expect = 3e-12
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 62/203 (30%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L V+ + R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKEVS------ 65
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
SP + +RA + V +L
Sbjct: 66 ---------FASPR---------------------DARRAGIAMVYQL------------ 83
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
S +R+ + IA L N ++ +DEPT+ L + + +R + G ++
Sbjct: 84 -------SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVI 136
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
H+ ++FE D + ++ G
Sbjct: 137 FISHRLD-EVFEIADRVTVLRDG 158
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 67/272 (24%), Positives = 102/272 (37%), Gaps = 64/272 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVS 192
LR L +Y G++ L D+S I +T L+GP GK+TLL L L
Sbjct: 3 LRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 193 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
G++ +G + V R V Q+ ++ + + +
Sbjct: 60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKP-NPFPGSIYDNVAYG-------------- 104
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306
++ GIK E+LD VE ++ L D D L +
Sbjct: 105 -----LRLHGIKLKEELD--------------ERVEEALRKAALWDEVKDRLHALGL--- 142
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI- 362
SGGQ++RL L VL +DE ++ LD +T +I I LK T VI
Sbjct: 143 -SGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEY-----TIVIV 196
Query: 363 --SLLQPAPEAYELFDDVILLSEGQIVYQGPR 392
++ Q A + D L G++V GP
Sbjct: 197 THNMQQ----AARVADRTAFLLNGRLVEFGPT 224
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-12
Identities = 64/247 (25%), Positives = 101/247 (40%), Gaps = 73/247 (29%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L D++ + L ++GP SGK++LL AL G L SG ++ G
Sbjct: 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG---------- 66
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
+ AYVSQ+ W + T+RE + F G +D R EK+ IK + DL+I
Sbjct: 67 SIAYVSQEPW-IQNGTIRENILF-------GKPFDE----ERYEKV--IKACALEPDLEI 112
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
G T +G+ KGI SGGQK+R++ +
Sbjct: 113 ----LPDGDL--------------------TEIGE---KGINLSGGQKQRISLARAVYSD 145
Query: 325 ARVLFMDEISNGLDSSTTYQIIKY------LKHSTRALDGTTVISLLQPAPEAYELFDDV 378
A + +D+ + +D+ I + L + TR L T + LL A D +
Sbjct: 146 ADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRIL-VTHQLQLLPHA-------DQI 197
Query: 379 ILLSEGQ 385
++L G+
Sbjct: 198 VVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 4e-12
Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 18/186 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYP--KRQETFA 901
V+ + + G + L+G +GAGKTT ++ G + G I I+ P KR A
Sbjct: 18 GVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR----A 73
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ GY Q LTV E++L +R S+ E E + +EE++E +T L +
Sbjct: 74 RLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEK---LEELLEEFHITHLRKS- 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
LS +R+R+ IA L NP + +DEP +G+D A + + ++ + + G
Sbjct: 130 ---KAS-SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIG 185
Query: 1021 IVCTIH 1026
++ T H
Sbjct: 186 VLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-12
Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 30/209 (14%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKRQETFARISGY 906
+ G +TAL+G +G GK+TL+ A R ++G + GD IS RQ AR
Sbjct: 24 SLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQ--LARRLAL 80
Query: 907 CEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
Q+ + G+TV E S S W RL +E A V + ME + L+
Sbjct: 81 LPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVNQAMEQTRINHLADRR 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS QR+R +A+ L + +V +DEPT+ LD +MR +R + G+T
Sbjct: 136 L-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKT 190
Query: 1021 IVCTIHQPSIDIFES---FDELLFMKRGG 1046
+V +H D+ ++ D L+ + G
Sbjct: 191 VVTVLH----DLNQASRYCDHLVVLANGH 215
|
Length = 255 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 5e-12
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 21/167 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQETF 900
L +++ + PG L L+G +GAGKTTLMDV+ G R G + +GD ++ P+ +
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 901 ARISGYCEQNDIHS--PGLTVLESLLF------SAWLRLPSEIELETQRAFVEEVMELVE 952
AR G + + LTV E+L S + L + + +R ++E++ +
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL-RAEERRRIDELLATIG 136
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
L L L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 137 LGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 6e-12
Identities = 68/265 (25%), Positives = 102/265 (38%), Gaps = 45/265 (16%)
Query: 137 QLRIYRGN--RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LR+ R + I+D + P LT LLGP SGK+TLL LAG L +G
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGT 57
Query: 195 ITYNG---HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 251
+ G HG R A V Q +TVR+ + + +
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPH 103
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311
R AG P + VV+ + L AD + +SGG+
Sbjct: 104 RSLWAGDSPHDAA----------------VVDRALARTELSHLAD-----RDMSTLSGGE 142
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371
++R+ L ++L +DE +N LD + + + A G TV++ L A
Sbjct: 143 RQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALV--RELAATGVTVVAALHDLNLA 200
Query: 372 YELFDDVILLSEGQIVYQGPRVSVL 396
D V++L G++V GP VL
Sbjct: 201 ASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 6e-12
Identities = 54/207 (26%), Positives = 84/207 (40%), Gaps = 30/207 (14%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGD 887
+E + D L ++ G + G +G+GKTTL+ +LAG G
Sbjct: 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGR 56
Query: 888 IYISGYPKRQE--TFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQR 941
+ ++G P + + AR Y H+PG L+VLE+L F W S
Sbjct: 57 VLLNGGPLDFQRDSIARGLLYLG----HAPGIKTTLSVLENLRF--WHADHS-------D 103
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
VEE + V L + LS Q++R+ +A L++ + +DEPT+ LD
Sbjct: 104 EQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
A + G +V T HQ
Sbjct: 159 AGVARFAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 7e-12
Identities = 65/261 (24%), Positives = 105/261 (40%), Gaps = 49/261 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
LDD++ + L LLGP SGK+TLL +AG L SG+I NG V
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQ--PDSGRIRLNGQDATR-VHA 69
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R +V Q +TVR+ + F G + + + +
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAF-------GLEIRKHPKAKIKAR------------ 110
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
VE +++++ L +GD +SGGQ++R+ L +
Sbjct: 111 ---------------VEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARALAVEPQ 150
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE LD+ ++ +L+ + TTV + EA E+ D ++++S G+I
Sbjct: 151 VLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVF-VTHDQEEAMEVADRIVVMSNGKI 209
Query: 387 VYQGPRVSVLDFFAS---MGF 404
G V D A+ M F
Sbjct: 210 EQIGSPDEVYDHPANPFVMSF 230
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 7e-12
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 18/161 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETF 900
L +V+ G L ++G SG GKTTL++++AG T G I I G +
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAER--- 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G QN+ P L V++++ F LR IE +R +++ LV L
Sbjct: 77 ----GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKY 129
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
I LS R+R+ IA L P ++ +DEP LDA
Sbjct: 130 IW-----QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165
|
Length = 259 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 8e-12
Identities = 74/292 (25%), Positives = 117/292 (40%), Gaps = 63/292 (21%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M E L+ +R G+ +L D++ I +LLGP GK+TLL +AG L
Sbjct: 1 MAELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-----L 52
Query: 190 QV--SGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
+ SG+I +G +PP R A V Q MTV E + F
Sbjct: 53 EEPTSGEILIDGR-DVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFG------------ 99
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L K+ G+ E + + K+LGL+ +
Sbjct: 100 ---L----KLRGVPKAEIDKRVKE---------------VAKLLGLEHLLNRKP-----L 132
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+SGGQ++R+ LV +V +DE +SN LD+ + +K L GTT I +
Sbjct: 133 QLSGGQRQRVALARALVRKPKVFLLDEPLSN-LDAKLRVLMRSEIKKLHERL-GTTTIYV 190
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA L D ++++++G+I G + + + P VA F+
Sbjct: 191 THDQVEAMTLADRIVVMNDGRIQQVGTPLELYE--------RPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 8e-12
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 869 TTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS----GYCEQNDIHSPGLTVLESLL 924
+TL+ ++ G G I + G + ++ G Q+ P LTV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984
F + A EE +E V L + + LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDF----LDREPVGTLSGGQKQRVAIARALL 106
Query: 985 ANPSIVFMDEPTS 997
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 9e-12
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 58/261 (22%)
Query: 137 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196
L + G +L+D+S ++P ++GP +GK+TLL A+ G L SG I
Sbjct: 4 DLTVSYGGH---PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIR 57
Query: 197 YNGHGFKEFVPPRTS----AYVSQQ---DWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G P YV Q+ D ++VR+ + +
Sbjct: 58 VFG------KPLEKERKRIGYVPQRRSIDRD-FPISVRDVV-----------------LM 93
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+ + V+ ++ +GL AD +G+ +SG
Sbjct: 94 GLYGHKGLFRRL-------------SKADKAKVDEALERVGLSELADRQIGE-----LSG 135
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQ++R+ LV +L +DE G+D T I + L+ R +G T++ +
Sbjct: 136 GQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLG 193
Query: 370 EAYELFDDVILLSEGQIVYQG 390
E FD V+LL +V G
Sbjct: 194 LVLEYFDRVLLL-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 9e-12
Identities = 48/163 (29%), Positives = 75/163 (46%), Gaps = 23/163 (14%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQET 899
V+ + G L+G SG GKTTL+ ++AG +T G+I + G KR
Sbjct: 18 GVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRP-- 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
QN P LTV E++ F L+ + E+ + V E ++LV+L +
Sbjct: 74 ----VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEI---KERVAEALDLVQLEGYANR 126
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 127 KP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 9e-12
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 47/227 (20%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE 908
PG ALVG SG GK+T++ +L + G+I + G R G
Sbjct: 26 IPPGKTVALVGSSGCGKSTVVSLL--ERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP---- 964
Q E +LF + I A EEV E + ++ ++ LP
Sbjct: 84 Q-----------EPVLFDGTIA--ENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYD 130
Query: 965 ---GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
G G LS Q++R+ IA L+ NP I+ +DE TS LDA + +V + + GR
Sbjct: 131 TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGR 189
Query: 1020 TIVCTIHQPS-------IDIFE--------SFDELLFMKRGGELIYA 1051
T + H+ S I + + + DEL M + G +YA
Sbjct: 190 TTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDEL--MAQKG--VYA 232
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 49/179 (27%), Positives = 83/179 (46%), Gaps = 18/179 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G + ALVGV+G+GK+TL L G + G I I G P RQ + Y Q++
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 915 PGLTVL-ESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
VL E ++ WLR + + R V + V++ IG
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q+KR+ +A + ++ +DEP +G+D + A ++ +R + + G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTH 200
|
Length = 272 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 57/200 (28%), Positives = 84/200 (42%), Gaps = 32/200 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-----YPKRQET 899
L +V+ R G L G SGAGKTTL+ +L G T G + I+G RQ
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 900 FARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q+ P TV E++ L + + E E QR V + V L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENVALP--LEVRGKKEREIQRR-VGAALRQVGLEHKAD 132
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
LSG EQ +R+ IA +V +P ++ DEPT LD + ++
Sbjct: 133 AFPEQLSGG------------EQ-QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDL 179
Query: 1011 VRNIVNTGRTIVCTIHQPSI 1030
++ + G T++ H S+
Sbjct: 180 LKRLNKRGTTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 1e-11
Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 41/213 (19%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E + ++L V + G + A++G +G+GK+TL + G + EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDG------ 67
Query: 899 TFARISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIE-----------LETQRAFV 944
DI L+ E +F A+ P EI + +R
Sbjct: 68 -----------EDILE--LSPDERARAGIFLAFQY-PVEIPGVTNSDFLRAAMNARRGAR 113
Query: 945 EEVMELVELTSLSGALIGLP------GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
+ E ++ L+GL +N G S ++KR I L+ P + +DEP S
Sbjct: 114 GILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030
GLD A IV + + GR ++ H +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-11
Identities = 64/251 (25%), Positives = 97/251 (38%), Gaps = 51/251 (20%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
I + ILDDLS + + L G +GKTTL LAG + + SG I N
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLN 60
Query: 199 GHGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
G K ++ YV Q D+Q+ +VRE EL K
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVRE-------------------ELLLGLKELD 101
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
++ E ++K L L + +SGGQK+RL
Sbjct: 102 AGNEQ-------------------AETVLKDLDLYALKERHPLS-----LSGGQKQRLAI 137
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE-AYELFD 376
L+ +L DE ++GLD ++ + ++ A G VI ++ E ++ D
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIREL--AAQGKAVI-VITHDYEFLAKVCD 194
Query: 377 DVILLSEGQIV 387
V+LL+ G IV
Sbjct: 195 RVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-11
Identities = 66/248 (26%), Positives = 106/248 (42%), Gaps = 52/248 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
L DL+ I+ +LT L+G +GK+TLL L G L G+I NG ++ P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ ++VSQ + A T+RE + A + + I + + P D
Sbjct: 392 AWRKQISWVSQNPYLFAG-TIRENILLAR----PDASDEEIIAALDQAGLLEFVPKPD-- 444
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
GLDT ++G+ G+SGGQ +RL L+ PA
Sbjct: 445 ------------------------GLDT----VIGEGG-AGLSGGQAQRLALARALLSPA 475
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL---LQPAPEAYELFDDVILLS 382
+L +DE + LD+ T I++ L TV+ + L+ A +A D +++L
Sbjct: 476 SLLLLDEPTAHLDAETEQIILQAL---QELAKQKTVLVITHRLEDAADA----DRIVVLD 528
Query: 383 EGQIVYQG 390
G++V QG
Sbjct: 529 NGRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-11
Identities = 56/240 (23%), Positives = 91/240 (37%), Gaps = 56/240 (23%)
Query: 160 PSRLTLLLGPPSSGKTTLLLALAG--RLGHHLQVSGKITYNGHGF-----KEFVPP--RT 210
+T + G +GK+TLL +AG + G I NG K +PP R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDG-----GTIVLNGTVLFDSRKKINLPPQQRK 76
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
V QQ + VRE L F +K
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG----------------------------------LKR 102
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
+ S V+ ++ +LGLD + +SGG+K+R+ L +L +
Sbjct: 103 KRNREDRIS--VDELLDLLGLDHLLNRYPA-----QLSGGEKQRVALARALAAQPELLLL 155
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE + LD + Q++ LK + L+ VI + EA L D ++++ +G++ Y G
Sbjct: 156 DEPFSALDRALRLQLLPELKQIKKNLNI-PVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 46/257 (17%)
Query: 137 QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196
L + G + IL+DLS + ++T L+GP GK+TLL A L SG +
Sbjct: 7 NLTVGYGTK---RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL---TPQSGTVF 60
Query: 197 YNGHGFKEFVPPRTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253
+ + ++ Q +TVRE + + G+ S +
Sbjct: 61 LGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAY-GR-----SPW---------- 104
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313
L ++ + L + + V M+ ++ AD + D +SGGQ++
Sbjct: 105 ----------LSLWGR---LSAEDNAR-VNQAMEQTRINHLADRRLTD-----LSGGQRQ 145
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
R +L V+ +DE + LD + ++++ ++ G TV+++L +A
Sbjct: 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRE--LNTQGKTVVTVLHDLNQASR 203
Query: 374 LFDDVILLSEGQIVYQG 390
D +++L+ G ++ QG
Sbjct: 204 YCDHLVVLANGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 58/211 (27%), Positives = 99/211 (46%), Gaps = 17/211 (8%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARI 903
+V+ G + L+G +GAGKTT ++ G R G II D IS P I
Sbjct: 21 DVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
GY Q L+V ++L+ A L++ ++ E + E+ME + L ++
Sbjct: 81 -GYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMG-- 135
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
LS +R+R+ IA L ANP + +DEP +G+D + + R + ++ ++G ++
Sbjct: 136 ---QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI 192
Query: 1024 TIHQPSIDIFESFD--ELLFMKRGGELIYAG 1052
T H ++ E+ E ++ G LI G
Sbjct: 193 TDH----NVRETLAVCERAYIVSQGHLIAHG 219
|
Length = 241 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 3e-11
Identities = 70/267 (26%), Positives = 111/267 (41%), Gaps = 55/267 (20%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M+ A + R + G++ ++D LS ++ LLGP +GKTT L L LG
Sbjct: 3 MSVAPIDFRNVEKRYGDK---LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGL 56
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+G I+ G E VP R + A V GV ++D
Sbjct: 57 THPDAGSISLCG----EPVPSRA---------RHARQRV-----------GVVPQFD--- 89
Query: 248 ELARREKIAGIKPD----EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303
+ PD E+L +F + F L +V +++ L+ AD VG+
Sbjct: 90 ---------NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+SGG K+RLT LV VL +DE + GLD + + + L+ G T++
Sbjct: 139 ---LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLAR--GKTILL 193
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQG 390
EA L D + ++ EG+ + +G
Sbjct: 194 TTHFMEEAERLCDRLCVIEEGRKIAEG 220
|
Length = 306 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 21/149 (14%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG------YPKRQETFARISGYCEQNDIH 913
L+G SG GKTT + ++AG + G IYI G PK R QN
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKD-----RDIAMVFQNYAL 83
Query: 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
P +TV +++ F LR + E++ + V EV EL+++ L L P LS Q
Sbjct: 84 YPHMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHL---LDRKP--KQLSGGQ 135
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
R+R+ + +V P + MDEP S LDA+
Sbjct: 136 RQRVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 3e-11
Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 24/201 (11%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG-----RKTGGIIEGDIYISGYPKRQETFARISGYCE 908
G L AL+G SG GKTTL+ +AG TG I D ++ P + A +
Sbjct: 30 AGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF---- 85
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
QN P L V +++ F + + ++ E V + ++L L A LP
Sbjct: 86 QNYALFPHLKVEDNVAFGLRAQKMPKADIA------ERVADALKLVGLGDAAAHLP--AQ 137
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV----RNIVNTGRTIVCT 1024
LS ++R+ IA + P ++ +DEP S LDA A + + + TI+C
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL--TILCV 195
Query: 1025 IHQPSIDIFESFDELLFMKRG 1045
H D D+ MK G
Sbjct: 196 THDQD-DALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 19/164 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISGYPKRQ 897
LL NV G + L+G SG GK+TL+ + G TG + + + P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G Q+ + P L+V ++LLF+ LP+ ++ +R +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLD--- 125
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
GA P LS QR R+ + L+A P + +DEP S LD
Sbjct: 126 GAFHQDP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 63/212 (29%), Positives = 98/212 (46%), Gaps = 30/212 (14%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGY-P-KRQETFARISGYCEQ 909
G + +G +GAGK+T + +L TG ++ G + ++G P +R+E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKML----TGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMG 104
Query: 910 N------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
D L L+SL L+L EI F E + L E+ L G L
Sbjct: 105 QKLQLWWD-----LPALDSLEV---LKLIYEIP---DDEFAERLDFLTEILDLEGFL-KW 152
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 1022
P + LS QR R +A L+ P ++F+DEPT GLD A A + ++ T++
Sbjct: 153 P-VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVL 211
Query: 1023 CTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
T H DI D +L + + G+L++ G L
Sbjct: 212 LTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 3e-11
Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 35/223 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 899
L NV+ RPG A++G G+GK+TL+ +L G + T EG + + G RQ
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT----EGSVLLDGVDIRQIDPAD 536
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
R GY Q+ LF LR I L A EE++ EL ++
Sbjct: 537 LRRNIGYVPQD-----------PRLFYGTLR--DNIALGAPYADDEEILRAAELAGVTEF 583
Query: 960 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ P LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDR 643
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + G+T+V H+ S + + D ++ M G ++ GP
Sbjct: 644 LKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 62/254 (24%), Positives = 102/254 (40%), Gaps = 50/254 (19%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
+R + + +D +S ++P +T LLGP +GKTT L LAG L +G T +G
Sbjct: 11 FRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDG- 66
Query: 201 GFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
F P + +VS +T RE L++ +
Sbjct: 67 -FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFA-------------------GLY 106
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
G+K DE +E + LG++ D VG G S G ++++
Sbjct: 107 GLKGDELTA---------------RLEELADRLGMEELLDRRVG-----GFSTGMRQKVA 146
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
LV VL +DE + GLD T + ++++ G ++ E L D
Sbjct: 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCD 204
Query: 377 DVILLSEGQIVYQG 390
V++L G++VY+G
Sbjct: 205 RVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 4e-11
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 22/207 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIY-----ISGYPKRQET--FARI 903
PG + +VG SG+GK+TL L G + G I G++ + G +R+ +
Sbjct: 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKR 92
Query: 904 SGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GAL 960
Q+ + S P +T+ + + + L ++ + +EL+E L
Sbjct: 93 IAMIFQDPMTSLNPVMTIGDQIREALRLHGKG-----SRAEARKRAVELLEQVGLPDPER 147
Query: 961 IG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTG 1018
P + LS R+R+ IA+ L P ++ DEPT+ LD A ++ ++++ G
Sbjct: 148 RDRYP--HQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ H + + E D ++ M +G
Sbjct: 206 MAVLFITHDLGV-VAELADRVVVMYKG 231
|
Length = 539 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-11
Identities = 53/230 (23%), Positives = 97/230 (42%), Gaps = 51/230 (22%)
Query: 829 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG 886
E + L+D +N+ G L A+VG G+GK++L+ L G K G
Sbjct: 12 SGEQETSFTLKD-----INLE--VPKGELVAIVGPVGSGKSSLLSALLGELEKL----SG 60
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAF 943
+ + G I+ Y Q P + T+ E++LF + +R
Sbjct: 61 SVSVPG---------SIA-YVSQ----EPWIQNGTIRENILFGK--------PFDEER-- 96
Query: 944 VEEVME----LVELTSLSGAL---IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
E+V++ +L L IG GIN LS Q++R+++A + ++ I +D+P
Sbjct: 97 YEKVIKACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPL 155
Query: 997 SGLDAR-AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
S +DA I + ++ +T + HQ + + D+++ + G
Sbjct: 156 SAVDAHVGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 4e-11
Identities = 53/199 (26%), Positives = 82/199 (41%), Gaps = 33/199 (16%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
LL +V+ RPG + A++G +GAGK+TL+ L+G + G++ ++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD--SGEVRLNGRPLADWSPAE 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFS-------AWLRLPSEIELETQRAFVEEVMELVE 952
AR Q HS SL F A R P + A V + V+
Sbjct: 74 LARRRAVLPQ---HS-------SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVD 123
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAI 1006
L L+G LS +++R+ +A L P + +DEPTS LD
Sbjct: 124 LAHLAGRD-----YPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHH 178
Query: 1007 VMRTVRNIVNTGRTIVCTI 1025
V+R R + + V +
Sbjct: 179 VLRLARQLAHERGLAVIVV 197
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 4e-11
Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 37/215 (17%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET---F 900
N+ G L+G SG+GKTT M + +IE G+I+I G R++
Sbjct: 19 NLNLEIAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVEL 73
Query: 901 ARISGYCEQNDIHSPGLTVLE------SLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R GY Q P +TV E LL W + E R +E++ LV L
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLD 124
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
A P LS Q++R+ +A L A+P ++ MDEP LD + + +
Sbjct: 125 PAEFAD-RYPH--ELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRL 181
Query: 1015 VNT-GRTIVCTIHQPSIDIFESF---DELLFMKRG 1045
G+TIV H DI E+F D + MK G
Sbjct: 182 QQELGKTIVFVTH----DIDEAFRLADRIAIMKNG 212
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 4e-11
Identities = 61/190 (32%), Positives = 87/190 (45%), Gaps = 43/190 (22%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
QEG ++ +L NV+ + G + A+VG SG+GK+TL+ +L G T GD+ +G
Sbjct: 16 QEGSVQT--DVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQ 71
Query: 894 P-------KRQETFARISGYCEQNDIHSPGLTVLES----LLFSAWLRLPSEIELETQRA 942
P + E + G+ Q P T LE+ LL + P+EI RA
Sbjct: 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK--KKPAEIN---SRA 126
Query: 943 FVEEVMELVEL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
E++ V L + LSG +R+R+ IA LV NP +V DE
Sbjct: 127 L--EMLAAVGLEHRANHRPSELSGG-------------ERQRVAIARALVNNPRLVLADE 171
Query: 995 PTSGLDARAA 1004
PT LDAR A
Sbjct: 172 PTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 4e-11
Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF 900
+L +V+ PG +TALVG SG+GK+T++ +L + G G + + G P
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG----GQVLLDGKP------ 77
Query: 901 ARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS Y E +HS V E +LF+ L+ I Q E V E +
Sbjct: 78 --ISQY-EHKYLHSKVSLVGQEPVLFARSLQ--DNIAYGLQSCSFECVKEAAQKAHAHSF 132
Query: 960 LIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ L G G LS Q++R+ IA L+ NP ++ +DE TS LDA + V +
Sbjct: 133 ISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQA 192
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT++ H+ + E D++L + G
Sbjct: 193 LYD-WPERRTVLVIAHR--LSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 5e-11
Identities = 64/263 (24%), Positives = 105/263 (39%), Gaps = 48/263 (18%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
L+ + + R + IL DLS + P ++GP +GKTTLL L G H SG
Sbjct: 34 LKNVSVRRNGK---KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTG---EHPPSSGD 87
Query: 195 ITYNGHGF-KEFVPP---RTSAYVS---QQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+T G F K + VS + ++V E TVR+ + + + I
Sbjct: 88 VTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRE-TVRDVV--------LSGFFASIG 138
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
EDL ++++++LG AD G +
Sbjct: 139 IYQEDLT------AEDLAA---------------AQWLLELLGAKHLADRPFGS-----L 172
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
S G+++R+ LV +L +DE + GLD Q++ L+ + ++ +
Sbjct: 173 SQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHH 232
Query: 368 APEAYELFDDVILLSEGQIVYQG 390
A E F +LL EG++V QG
Sbjct: 233 AEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-11
Identities = 62/222 (27%), Positives = 93/222 (41%), Gaps = 35/222 (15%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE---TF 900
+V G L+G SG+GKTT + + +IE G+I I G
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 901 ARISGYCEQNDIHSPGLTVLESLLF----SAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R GY Q P LTV E++ W + E + +E+++LV L
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDK-------ERIKKRADELLDLVGLDP- 125
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-V 1015
S P + LS Q++R+ +A L A+P I+ MDEP LD + ++ +
Sbjct: 126 SEYADRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK 183
Query: 1016 NTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELI-YAGP 1053
G+TIV H DI E+ D + M GE++ Y P
Sbjct: 184 ELGKTIVFVTH----DIDEALKLADRIAVMD-AGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 7e-11
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 75/275 (27%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LR L G R T+L + +R + ++GP SGK+TLL + G L SG+
Sbjct: 3 LRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGE 56
Query: 195 ITYNGH-----GFKEFVP-PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
+ +G E R + Q +TV E + F + S+ + I E
Sbjct: 57 VLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSE-EEIRE 115
Query: 249 LARREKIA--GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+ EK+ G++ EDL
Sbjct: 116 IVL-EKLEAVGLRGAEDL--------------------------------------YPAE 136
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGG KKR V AR +L DE + GLD + I ++ + L T
Sbjct: 137 LSGGMKKR-------VALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLT 189
Query: 360 TVI---SLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+++ L A+ + D + +L +G+IV +G
Sbjct: 190 SIMVTHDL----DTAFAIADRIAVLYDGKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.3 bits (156), Expect = 7e-11
Identities = 62/219 (28%), Positives = 96/219 (43%), Gaps = 21/219 (9%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR---- 896
+L + F +T LVG +G GK+TL L+G R G + Y KR
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 897 -QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
++ A + EQ ++ + + FS LR E E R V+E + LV+
Sbjct: 75 LRQQVATVFQDPEQQIFYT---DIDSDIAFS--LRNLGVPEAEITRR-VDEALTLVDAQH 128
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
I LS Q+KR+ IA LV + +DEPT+GLD ++ +R IV
Sbjct: 129 FRHQ-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV 183
Query: 1016 NTGRTIVCTIHQPSID-IFESFDELLFMKRGGELIYAGP 1053
G ++ + H ID I+E D + +++G L + P
Sbjct: 184 AQGNHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 67/251 (26%), Positives = 104/251 (41%), Gaps = 60/251 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LDD+S +RP R LLGP +GK+T L +L RL + Q G+I+ GH + P
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKST-LFSLLTRL-YVAQ-EGQISVAGHDLRR-APRAA 72
Query: 211 SAY---VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A V QQ +++VR+ L + G L+R E A I E L
Sbjct: 73 LARLGVVFQQPTLDLDLSVRQNLRYHAALHG----------LSRAEARARI--AELLA-- 118
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
LGL AD V + ++GG ++R+ L+ +
Sbjct: 119 --------------------RLGLAERADDKVRE-----LNGGHRRRVEIARALLHRPAL 153
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF------DDVILL 381
L +DE + GLD ++ I ++ RAL +S+L A L D +++L
Sbjct: 154 LLLDEPTVGLDPASRAAITAHV----RALARDQGLSVLW----ATHLVDEIEADDRLVVL 205
Query: 382 SEGQIVYQGPR 392
G+++ G
Sbjct: 206 HRGRVLADGAA 216
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 9e-11
Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 33/193 (17%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
+V+ + + G + AL+G +GAGK+TLM +L G + G+I + G R
Sbjct: 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKE------VR 69
Query: 903 ISGYCEQND--------IHS-----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
I D +H P LTV E+++ I+ RA ++E+ E
Sbjct: 70 IKS---PRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSE 126
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L A + LS +++R+ I L ++ +DEPT+ L + A +
Sbjct: 127 RYGLPVDPDAKVA-----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE 181
Query: 1010 TVRNIVNTGRTIV 1022
+R + G+TI+
Sbjct: 182 ILRRLAAEGKTII 194
|
Length = 501 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 1e-10
Identities = 56/190 (29%), Positives = 86/190 (45%), Gaps = 21/190 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
++Q L V+ G + AL+G +GAGKTTL+ + G ++G II I+G P
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLP--- 71
Query: 898 ETFARIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-EL 953
R Y + P LTV E+LL A+ R E Q +EEV EL L
Sbjct: 72 -PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRL 126
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
G LS +++ L IA L++ P ++ +DEP+ GL + + ++
Sbjct: 127 KERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKE 181
Query: 1014 IV-NTGRTIV 1022
+ G TI+
Sbjct: 182 LRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.0 bits (155), Expect = 1e-10
Identities = 65/240 (27%), Positives = 114/240 (47%), Gaps = 25/240 (10%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE--- 898
L ++ + G TAL+G +G+GK+TL+ L G + T G + GDI +S K++E
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 899 ---TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM-ELVELT 954
+ + E TVL+ + F P + ++A E++ E +E+
Sbjct: 82 VRKKVGVVFQFPESQLFEE---TVLKDVAFG-----PQNFGIPKEKA--EKIAAEKLEMV 131
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L+ LS Q +R+ IA L P ++ +DEPT+GLD +A +M+ +I
Sbjct: 132 GLADEFWEKSPFE-LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI 190
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVE-GVPK 1073
+G+T+V H +D + + +++ G +I G S + + + +A E GVPK
Sbjct: 191 HQSGQTVVLVTHL--MDDVADYADYVYLLEKGHIISCGT-PSDVFQEVDFLKAHELGVPK 247
|
Length = 288 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 30/214 (14%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--- 901
L +++ G ALVG SG+GK+TL++++ + + G I I G+ R T A
Sbjct: 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIP--RFYDVDSGRILIDGHDVRDYTLASLR 75
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R G Q + LF+ + I A EEV E + ++
Sbjct: 76 RQIGLVSQ-----------DVFLFNDTVA--ENIAYGRPGATREEVEEAARAANAHEFIM 122
Query: 962 GLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LP G G LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 123 ELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ RT H+ S E+ D ++ ++ G
Sbjct: 183 RLM-KNRTTFVIAHRLS--TIENADRIVVLEDGK 213
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 51/166 (30%), Positives = 74/166 (44%), Gaps = 21/166 (12%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYP----KRQ 897
L NV+ G +VG SG+GK+TL +LAG + + G I + G P KR
Sbjct: 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILLDGKPLAPKKRA 77
Query: 898 ETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ F R Q+ S P TV L S+ + + E+++ V L
Sbjct: 78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQR-----IAELLDQVGLPP 132
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
L P + LS QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 133 --SFLDRRP--HELSGGQRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 57/212 (26%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQET 899
+L + + G + ++G SG+GK+TL+ + + G I I G ++
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKN 70
Query: 900 FARIS---GYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTS 955
+ G Q P LTVLE++ + ++ S+ E E E +EL+E
Sbjct: 71 INELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAE------ERALELLEKVG 124
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L+ P LS Q++R+ IA L NP ++ DEPTS LD V+ ++++
Sbjct: 125 LADKADAYPA--QLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA 182
Query: 1016 NTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 1045
G T+V H+ F E D ++FM G
Sbjct: 183 EEGMTMVVVTHEMG---FAREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 34/165 (20%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT----GGIIEGDIYISGYPKRQETFARISGYCE 908
PG L ++G +GAGKTT+MDV+ G KT G ++ G ++G P+ Q AR +G
Sbjct: 26 DPGELRVIIGPNGAGKTTMMDVITG-KTRPDEGSVLFGGTDLTGLPEHQ--IAR-AGIGR 81
Query: 909 --QNDIHSPGLTVLESL------------LFSAWLRLPSEIELETQRAFVEEVMELVELT 954
Q LTV E+L L ++ +EEV+E + L
Sbjct: 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLS-------AEEKDRIEEVLETIGLA 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
+ L GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 135 DEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 1e-10
Identities = 61/210 (29%), Positives = 93/210 (44%), Gaps = 28/210 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR---KTGGI-------IEGDIYISGYPKRQETFAR 902
PG + +VG SG+GK+TL+ LAGR G E ++Y +R+
Sbjct: 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRT 86
Query: 903 ISGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
G+ QN S G + E L+ + R I RA ++ +E VE+
Sbjct: 87 EWGFVHQNPRDGLRMRVSAGANIGERLM-AIGARHYGNI-----RATAQDWLEEVEIDP- 139
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
+ LP S ++RL IA LV P +VFMDEPT GLD A ++ +R +V
Sbjct: 140 -TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR 196
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G ++ H + + LL M++G
Sbjct: 197 DLGLAVIIVTHDLGVARLLA-QRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-10
Identities = 60/252 (23%), Positives = 102/252 (40%), Gaps = 52/252 (20%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y R LD +S + + LLGP +GKTTL+ LA SG I +G
Sbjct: 10 YGKKR----ALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQ 61
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
+ R Y+ Q+ TVRE LD+ +G+ SK E+ R
Sbjct: 62 DVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSK-----EVKAR------ 110
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
V+ +++++ L A +G +SGG ++R+
Sbjct: 111 -----------------------VDEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIA 142
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ LVG +L +DE + GLD + I++ + + VI + L + V
Sbjct: 143 QALVGDPSILIVDEPTAGLDPE---ERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199
Query: 379 ILLSEGQIVYQG 390
+L++G++V++G
Sbjct: 200 AVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 24/83 (28%), Positives = 46/83 (55%), Gaps = 2/83 (2%)
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SGGQ++R+ L+ +L +DE ++GLD ++ ++++ L+ A +G TVI
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE--LAEEGRTVI 134
Query: 363 SLLQPAPEAYELFDDVILLSEGQ 385
+ A D VI+L +G+
Sbjct: 135 IVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 2e-10
Identities = 58/265 (21%), Positives = 97/265 (36%), Gaps = 62/265 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
+ + LDD+S I+ L+G SGK+TL A+ LG SG I ++G
Sbjct: 11 FPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAI---LGLLKPTSGSIIFDGK 67
Query: 201 -----GFKEFVPPRTS-AYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELAR 251
+ R V QD + MT+ E + + G SK + + A
Sbjct: 68 DLLKLSRRLRKIRRKEIQMVF-QDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEAR-KEAV 125
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311
+ G+ E+ + + E+ SGGQ
Sbjct: 126 LLLLVGVGLPEE---VLNRYP----------------------------HEL----SGGQ 150
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLL 365
++R+ L ++L DE ++ LD S QI+ LK L G T++ +
Sbjct: 151 RQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGV- 208
Query: 366 QPAPEAYELFDDVILLSEGQIVYQG 390
++ D V ++ G+IV +G
Sbjct: 209 -----VAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 2e-10
Identities = 61/224 (27%), Positives = 106/224 (47%), Gaps = 22/224 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARIS 904
N++ + L+G +GAGK+TL+ ++ G R T G+I G+P ++ +I
Sbjct: 18 NISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHKIG 73
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
E ++ LT E+L L L R ++EV+ +V+LT+ G
Sbjct: 74 SLIESPPLYE-NLTARENLKVHTTLL-----GLPDSR--IDEVLNIVDLTN-----TGKK 120
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
S ++RL IA+ L+ +P ++ +DEPT+GLD + +R+ G T++ +
Sbjct: 121 KAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILS 180
Query: 1025 IHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068
H S ++ + D + + G L Y G + +KS L K F V
Sbjct: 181 SHILS-EVQQLADHIGIIS-EGVLGYQGKI-NKSENLEKLFVEV 221
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 55/215 (25%), Positives = 89/215 (41%), Gaps = 30/215 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGYPKRQET 899
+ L N G A++G SG+GK+TL+ +LAG + G I + I+ + Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE-QAL 410
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
IS ++ LFS LR + L A EE+ ++ L
Sbjct: 411 RETISVLTQRVH------------LFSGTLR--DNLRLANPDASDEELWAALQQVGLEKL 456
Query: 960 LIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
L P G+N LS +R+RL +A L+ + + +DEPT GLD V+
Sbjct: 457 LESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLAL 516
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ G+T++ H+ E D ++ + G
Sbjct: 517 LFEHAE-GKTLLMVTHRLR--GLERMDRIIVLDNG 548
|
Length = 573 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 53/189 (28%), Positives = 81/189 (42%), Gaps = 44/189 (23%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIE--------GDIYISGYPKRQETFARI 903
PG + +VG SG+GKTTL++ L+ R G + D+Y +R+
Sbjct: 31 PGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTE 90
Query: 904 SGYCEQNDIH------SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 953
G+ Q+ S G + E L+ R +I RA + +E VE+
Sbjct: 91 WGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDI-----RATAGDWLERVEIDAAR 144
Query: 954 -----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
T+ SG + ++RL IA LV +P +VFMDEPT GLD A ++
Sbjct: 145 IDDLPTTFSGGM-------------QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLL 191
Query: 1009 RTVRNIVNT 1017
+R +V
Sbjct: 192 DLLRGLVRE 200
|
Length = 258 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 53/155 (34%), Positives = 81/155 (52%), Gaps = 20/155 (12%)
Query: 854 PGV-LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG---YPKRQETF----ARISG 905
PG +TA+ G SG+GKTTL+ ++AG EG+I ++G + R+ F R G
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPD--EGEIVLNGRTLFDSRKGIFLPPEKRRIG 78
Query: 906 YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
Y Q P L+V +L + PSE +R E V+EL+ + L L LPG
Sbjct: 79 YVFQEARLFPHLSVRGNLRYGMKRARPSE-----RRISFERVIELLGIGHL---LGRLPG 130
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS +++R+ I L+++P ++ MDEP + LD
Sbjct: 131 --RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 3e-10
Identities = 54/212 (25%), Positives = 94/212 (44%), Gaps = 26/212 (12%)
Query: 859 ALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG---YPKRQETFARISG----YCE 908
+VG SG+GK+ L + G + I+ G+I G ++ +I G
Sbjct: 35 GIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94
Query: 909 QNDIHS--PGLTV----LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
Q+ + S P +T+ E L + S+ E + +RA E++ELV + L
Sbjct: 95 QDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAK-ERAI--ELLELVGIPDPERRLKS 149
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTI 1021
P + LS R+R+ IA+ L NP ++ DEPT+ LD A ++ ++ + G +
Sbjct: 150 YP--HELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTAL 207
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ H + + E D + M G ++ GP
Sbjct: 208 ILITHDLGV-VAEIADRVAVMY-AGRIVEEGP 237
|
Length = 316 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 48/202 (23%), Positives = 84/202 (41%), Gaps = 16/202 (7%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
ED+ ++L V + G + A++G +G+GK+TL +AG + + G I G Q+
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG----QD 65
Query: 899 TF-------ARISGYCE-QNDIHSPGLTVLESLLFSAWLRLPSEIELETQ-RAFVEEVME 949
AR + Q PG++ LE L + R + E F++ +
Sbjct: 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKA 125
Query: 950 LVELTSLSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ L + + +N G S ++KR I + P + +DE SGLD A IV
Sbjct: 126 KLALLGMDEEFLN-RSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVA 184
Query: 1009 RTVRNIVNTGRTIVCTIHQPSI 1030
+ + R+ + H +
Sbjct: 185 EGINRLREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 4e-10
Identities = 64/256 (25%), Positives = 108/256 (42%), Gaps = 57/256 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD++S IRP ++G SGK+TLL L G G + +G ++ P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL 537
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV QD ++ T+R+ + G D E+ R ++AG + F
Sbjct: 538 RRNIGYV-PQDPRLFYGTLRDNIAL-----GAPYADD--EEILRAAELAG------VTEF 583
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
++ G D +G E + +SGGQ++ + L+ +
Sbjct: 584 VRRHPDG--------------------LDMQIG-ERGRSLSGGQRQAVALARALLRDPPI 622
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILL 381
L +DE ++ +D+ + + LK R L G T++ SLL +L D +I++
Sbjct: 623 LLLDEPTSAMDNRSEERFKDRLK---RWLAGKTLVLVTHRTSLL-------DLVDRIIVM 672
Query: 382 SEGQIVYQGPRVSVLD 397
G+IV GP+ VL+
Sbjct: 673 DNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 5e-10
Identities = 53/224 (23%), Positives = 81/224 (36%), Gaps = 60/224 (26%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L L+ + LLG +GK+TLLL L G L SG + +G
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ---SGAVLIDG---------- 53
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
E LD Y L RR+++ + D D +F
Sbjct: 54 ------------------EPLD-----------YSRKGLLERRQRVGLVFQDPDDQLFAA 84
Query: 270 ------SFA---LGGQKTSL--VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+F LG + + V + +G + L SGG+KKR+
Sbjct: 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPT--HCL---SGGEKKRVAIA 139
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ VL +DE + GLD + Q++ L RA +G TV+
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAIL-RRLRA-EGMTVV 181
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 62.3 bits (151), Expect = 6e-10
Identities = 57/258 (22%), Positives = 98/258 (37%), Gaps = 46/258 (17%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ LR+ G T+LDDLS I L L+G GKTTLL A+AG + ++G+
Sbjct: 8 IDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGR 63
Query: 195 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
I PP R A + Q + V + + F + Q + ++A R
Sbjct: 64 IAIADRDLTH-APPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPK-----ADIAER 117
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
V +K++GL A L +SGG +
Sbjct: 118 -----------------------------VADALKLVGLGDAAAHLPAQ-----LSGGMQ 143
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+R+ + VL +DE + LD++ + + + L T++ + +A
Sbjct: 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDAL 203
Query: 373 ELFDDVILLSEGQIVYQG 390
L D ++ +G++ G
Sbjct: 204 TLADKAGIMKDGRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 59/226 (26%), Positives = 98/226 (43%), Gaps = 44/226 (19%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
+ +L +V+ G A+VG SG+GK+T++ DV +G I I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS---------ILID 61
Query: 892 GYPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G R ++ R G Q+ TVL F+ + I A EEV+
Sbjct: 62 GQDIREVTLDSLRRAIGVVPQD-------TVL----FNDTIG--YNIRYGRPDATDEEVI 108
Query: 949 ELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999
E + + ++ P G G LS +++R+ IA ++ NP I+ +DE TS L
Sbjct: 109 EAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSAL 168
Query: 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
D + +R+ V+ GRT + H+ S I + D+++ +K G
Sbjct: 169 DTHTEREIQAALRD-VSKGRTTIVIAHRLS-TIVNA-DKIIVLKDG 211
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 6e-10
Identities = 63/207 (30%), Positives = 94/207 (45%), Gaps = 33/207 (15%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGII-EG-DIYISG 892
Q + NV + G + AL+G SG GKTT + D+ G R TG I+ +G DIY
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 893 YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G Q P ++V ++++ A L+L + + +ME+ E
Sbjct: 78 VDP--VAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAGIRDRD-------HLMEVAE 126
Query: 953 LTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
SL GA + P GLS Q++RL IA L P I+ MDEPTS LD +
Sbjct: 127 -RSLRGAALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 1005 AIVMRTVRNIVNTGRTIVCT--IHQPS 1029
A + + ++ I+ T +HQ +
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAA 211
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 52/186 (27%), Positives = 86/186 (46%), Gaps = 23/186 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RI 903
V+ + G + +G +GAGK+T M ++ G G ++ + G Q R
Sbjct: 21 VSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ----VCGEDVLQNPKEVQRN 76
Query: 904 SGYCEQNDIHSP---GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
GY + H+P + V E L F A + L+ + VEE++ELV L
Sbjct: 77 IGYLPE---HNPLYLDMYVREYLQFIAGIYGMKGQLLKQR---VEEMIELVGLRPEQHKK 130
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
IG LS R+R+ +A L+ +P ++ +DEPT+GLD + ++NI +T
Sbjct: 131 IG-----QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNI-GKDKT 184
Query: 1021 IVCTIH 1026
I+ + H
Sbjct: 185 IILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-10
Identities = 53/255 (20%), Positives = 104/255 (40%), Gaps = 49/255 (19%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LT ++D+S +RP + L+GP +GKTTL + G SG + + G +P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY---KPSSGTVIFRGRDI-TGLP 72
Query: 208 P--RTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P +++ Q ++ +TV E + + S + E+ A +
Sbjct: 73 PHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--- 129
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
+++ +GL AD G+ +S GQ++RL L
Sbjct: 130 -------------------ARELLEFVGLGELADRPAGN-----LSYGQQRRLEIARALA 165
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV------ISLLQPAPEAYELFD 376
++L +DE + GL+ T ++ + ++ R G T+ + L+ L D
Sbjct: 166 TQPKLLLLDEPAAGLNPEETEELAELIR-ELRDRGGVTILLIEHDMKLV------MGLAD 218
Query: 377 DVILLSEGQIVYQGP 391
+++L+ G+++ +G
Sbjct: 219 RIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 7e-10
Identities = 64/258 (24%), Positives = 111/258 (43%), Gaps = 53/258 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 207
+LD +S +RP + +LGP +GK+TLL AL+G L SG++T NG + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPE 71
Query: 208 --PRTSAYVSQQDWQVA-EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R A V Q+ +A TV+E + ++ R +G +P+ED
Sbjct: 72 ELARHRA-VLPQNSSLAFPFTVQE-----------------VVQMGRIPHRSGREPEEDE 113
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL--- 321
I + L A + +SGG+++R+ +L
Sbjct: 114 RI---------------AAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQL 153
Query: 322 ---VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
V R LF+DE ++ LD + + ++ + R +G V+++L A + D +
Sbjct: 154 WPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRI 211
Query: 379 ILLSEGQIVYQGPRVSVL 396
+LL +G+++ G VL
Sbjct: 212 VLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 7e-10
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 33/182 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL NV+ PG LVG +GAGK+TL+ +LAG G++ R+
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTRPKG-------LRV 68
Query: 904 SGYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVELTSLSG--- 958
GY Q P TVL+ ++ F L +E+E + L EL +L
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 959 ----------ALIGLPGINGLSTE-------QRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
AL+GL G R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGL-GFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDL 186
Query: 1002 RA 1003
+
Sbjct: 187 ES 188
|
Length = 530 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 7e-10
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 33/215 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ---ET 899
L ++ + + G A++G SG+GK+TL ++ G G + + G +Q ET
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLI----VGIWPPTSGSVRLDGADLKQWDRET 389
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
F + GY Q D+ LF + I + A E+++E +L +
Sbjct: 390 FGKHIGYLPQ-DVE----------LFPG--TVAENIARFGENADPEKIIEAAKLAGVHEL 436
Query: 960 LIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
++ LP G LS QR+R+ +A L +P +V +DEP S LD +
Sbjct: 437 ILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANA 496
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + G T+V H+PS + D++L ++ G
Sbjct: 497 IKALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 8e-10
Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 42/215 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+LD +S + P +LGP SGK+TLL LAG L G++T +G
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQDE 406
Query: 210 TSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
VS QD + + TVRE L A + + ++ L R G+
Sbjct: 407 VRRRVSVCAQDAHLFDTTVRENLRLA---RPDATDEELWAALER----VGLADW------ 453
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ L DT++G E +SGG+++RL L+ A +
Sbjct: 454 --------------------LRALPDGLDTVLG-EGGARLSGGERQRLALARALLADAPI 492
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
L +DE + LD+ T ++++ L AL G TV+
Sbjct: 493 LLLDEPTEHLDAETADELLEDL---LAALSGRTVV 524
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 8e-10
Identities = 62/213 (29%), Positives = 98/213 (46%), Gaps = 28/213 (13%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 907
G + A++G SGAGK+TL++++AG +T G I+ + + P + + + +
Sbjct: 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSML--FQ 78
Query: 908 EQNDIHSPGLTVLESLLF--SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
E N LTV +++ S L+L +E QR VE V L+G L LPG
Sbjct: 79 ENNLF--AHLTVAQNIGLGLSPGLKLNAE-----QREKVEAAAAQV---GLAGFLKRLPG 128
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRTVRNIV--NTGRTI 1021
LS QR+R+ +A LV I+ +DEP S LD RA M + + + T+
Sbjct: 129 --ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTL 183
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+ H P D D ++F+ G + G
Sbjct: 184 LMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-09
Identities = 73/235 (31%), Positives = 112/235 (47%), Gaps = 46/235 (19%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEG--DIYISGYP 894
DRL N+T F +TA +G +GAGKTT + +L G +G ++ G DI +
Sbjct: 947 DRL----NIT--FYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDA 1000
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEV----M 948
RQ G C Q++I LTV E +LF A L+ S E +LE + A +E+
Sbjct: 1001 VRQSL-----GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEME-AMLEDTGLHHK 1054
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
E LSG + QRK L++A+ V + +V +DEPTSG+D +
Sbjct: 1055 RNEEAQDLSGGM------------QRK-LSVAIAFVGDAKVVVLDEPTSGVDPYS----R 1097
Query: 1009 RTVRNIV---NTGRTIV-CTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSC 1059
R++ +++ +GRTI+ T H D+ D + + +G PL K+C
Sbjct: 1098 RSIWDLLLKYRSGRTIIMSTHHMDEADLLG--DRIAIISQGRLYCSGTPLFLKNC 1150
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 69/244 (28%), Positives = 103/244 (42%), Gaps = 52/244 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
T LDDL+ I +LLGP GKTT L +AG L+ SG+I G + +
Sbjct: 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-----LEEPTSGRIYIGGRDVTD-L 67
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
PP R A V Q MTV + + F K+ + DE
Sbjct: 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFG-------------------LKLRKVPKDE-- 106
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
I + V + ++L ++ D K +SGGQ++R+ G +V
Sbjct: 107 -IDER------------VREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVRE 148
Query: 325 ARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+V MDE +SN LD+ Q+ LK + L GTT I + EA + D + ++++
Sbjct: 149 PKVFLMDEPLSN-LDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMND 206
Query: 384 GQIV 387
GQI
Sbjct: 207 GQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 1e-09
Identities = 56/188 (29%), Positives = 79/188 (42%), Gaps = 40/188 (21%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---- 894
D +L +V+ PG A+VG SG+GK+TL+ +L G +T G ++ G
Sbjct: 463 PDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPES--GSVFYDGQDLAGL 520
Query: 895 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
+RQ G QN G ++ E++ A L L +E E
Sbjct: 521 DVQAVRRQ------LGVVLQNGRLMSG-SIFENIAGGAPLTL-------------DEAWE 560
Query: 950 LVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ L+ + +P G LS QR+RL IA LV P I+ DE TS LD
Sbjct: 561 AARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALD 620
Query: 1001 ARAAAIVM 1008
R AIV
Sbjct: 621 NRTQAIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQET 899
+L V+ G +T ++G +G GKTTL+ L G K+G I I+ P
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLP----P 69
Query: 900 FARIS---GYCEQNDIHSPGLTVLESLL--FSAWLRLPSEIELETQRAFVEEVMELVE-L 953
R Y Q P LTV E+LL +A R +I +E+ EL L
Sbjct: 70 HERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELFPVL 121
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ G G LS Q+++L IA LV P ++ +DEPT G+ + R +R
Sbjct: 122 KEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRR 176
Query: 1014 IVNTGRTIVCTIHQPSIDI-FESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068
+ G + + Q +D E D M+R G ++ +G + ++ + AV
Sbjct: 177 LRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 63/261 (24%), Positives = 106/261 (40%), Gaps = 48/261 (18%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+ Y G L D++ I + ++GP +GK+TLL +L G + SG+I +N
Sbjct: 11 KTYPGGH---QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFN 64
Query: 199 GHGF-----KEFVPPRTS-AYVSQQDWQVAEMTVRET--LDFAGQCQGVGSKYDMITELA 250
G KE R + QQ V ++V E L G S + + +
Sbjct: 65 GVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS--- 121
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
+ +K + E + I K++ Q+ A TL SGG
Sbjct: 122 KEDKAQALDALERVGILDKAY----QR-----------------ASTL---------SGG 151
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
Q++R+ LV +++ DE LD + +++ LK + T +++L Q
Sbjct: 152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ-VDL 210
Query: 371 AYELFDDVILLSEGQIVYQGP 391
A + D +I L G+IV+ GP
Sbjct: 211 AKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 71/263 (26%), Positives = 103/263 (39%), Gaps = 72/263 (27%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LDD+S I L LLGP SGKTTLL +AG L SG I + G
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LER--PDSGTILFGG---------ED 65
Query: 211 SAYVSQQDWQVA----------EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ V Q+ V MTV + + F R K +P
Sbjct: 66 ATDVPVQERNVGFVFQHYALFRHMTVFDNVAF-----------------GLRVKPRSERP 108
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
E +I K V ++K++ LD AD +SGGQ++R+
Sbjct: 109 PEA-EIRAK------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARA 150
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL-DGTTVISLL--QPAPEAYELFDD 377
L +VL +DE LD+ ++ K L+ R L D V ++ EA E+ D
Sbjct: 151 LAVEPKVLLLDEPFGALDA----KVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADR 206
Query: 378 VILLSEGQI--------VYQGPR 392
V+++++G+I VY P
Sbjct: 207 VVVMNKGRIEQVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 68/257 (26%), Positives = 105/257 (40%), Gaps = 62/257 (24%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQVAE 223
+LGP SGK+ LL +AG + SGKI NG PP R +YV Q
Sbjct: 30 ILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNL-PPEKRDISYVPQNYALFPH 85
Query: 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVE 283
MTV + + + G+ + E+ R+ V
Sbjct: 86 MTVYKNIAY-----GLKKRKVDKKEIERK-----------------------------VL 111
Query: 284 YIMKILGLDTCAD----TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 339
I ++LG+D + TL SGG+++R+ LV ++L +DE + LD
Sbjct: 112 EIAEMLGIDHLLNRKPETL---------SGGEQQRVAIARALVVNPKILLLDEPFSALDV 162
Query: 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFF 399
T ++ + LK R G TV+ + EA+ L D V ++ G+++ G V
Sbjct: 163 RTKEKLREELK-KIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEV---- 217
Query: 400 ASMGFSCPKRKNVADFL 416
F PK + VA+FL
Sbjct: 218 ----FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 2e-09
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 35/217 (16%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGYPKRQ--- 897
L + G ALVG SGAGKT+L++ L G + +G + I+G R+
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDP 418
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
E++ + + QN L LR + L A E++ + +E +S
Sbjct: 419 ESWRKHLSWVGQN-----------PQLPHGTLR--DNVLLGNPDASDEQLQQALENAWVS 465
Query: 958 GALIGLP-GIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
L LP G++ GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM
Sbjct: 466 EFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVM 525
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + T++ T HQ ++ +D++ M+ G
Sbjct: 526 QALNAASRRQTTLMVT-HQ--LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 62/227 (27%), Positives = 92/227 (40%), Gaps = 57/227 (25%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ---ET 899
L ++ A + G ++G SG+GK+TL +L G T G + D G RQ E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL------ETQRAFVEEV--MELV 951
R GY LP ++EL E F EE +++
Sbjct: 408 LGRHIGY------------------------LPQDVELFDGTIAENIARFGEEADPEKVI 443
Query: 952 ELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
E L+G IG G LS QR+R+ +A L +P +V +DEP S
Sbjct: 444 EAARLAGVHELILRLPQGYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSN 502
Query: 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LD+ A + + G T+V H+PS S D++L ++ G
Sbjct: 503 LDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDG 547
|
Length = 580 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 52/228 (22%), Positives = 85/228 (37%), Gaps = 47/228 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L V + G + AL+G +G+GK+TL + G + EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 903 ISGYCEQNDIHSPGLTVLESL---LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
DI L E +F A+ P EI F+ V E
Sbjct: 64 -------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADFLRYVNE---------- 103
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 1067
+++ H + + D + + G ++ +G EL E
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 49/222 (22%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N++ + +PG +VG +G+GK++L +LA + + G I I G
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSL--LLALFRLVELSSGSILIDGV----------- 66
Query: 905 GYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMELVE 952
DI GL L + +LFS +R P + EE+ + +E
Sbjct: 67 ------DISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSD------EELWQALE 114
Query: 953 LTSLSGALIGLPGI---------NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
L + LPG LS QR+ L +A L+ I+ +DE T+ +D
Sbjct: 115 RVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
A++ +T+R T++ H+ +D D +L + +G
Sbjct: 175 DALIQKTIRE-AFKDCTVLTIAHR--LDTIIDSDRILVLDKG 213
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 3e-09
Identities = 62/261 (23%), Positives = 107/261 (40%), Gaps = 64/261 (24%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKE 204
L LDD+S +RP + L+GP +GKTTL ++G L SG + ++G G
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL---RPTSGSVLFDGEDITGLPP 69
Query: 205 FVPPRTSAYVSQ--QDWQV-AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ + Q ++ E+TV E + A Q + + ++ ARRE+
Sbjct: 70 HE--IARLGIGRTFQIPRLFPELTVLENVMVAAQAR---TGSGLLLARARREERE----- 119
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKIL---GLDTCADTLVGDEMLKGISGGQKKRLTTG 318
E ++L GL AD G+ +S GQ++RL
Sbjct: 120 -------------------ARERAEELLERVGLADLADRPAGE-----LSYGQQRRLEIA 155
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVI------SLLQPAPE 370
L ++L +DE + GL+ T ++ + + R L G TV+ ++
Sbjct: 156 RALATDPKLLLLDEPAAGLNPEETEELAELI----RELRERGITVLLVEHDMDVV----- 206
Query: 371 AYELFDDVILLSEGQIVYQGP 391
L D V +L +G+++ +G
Sbjct: 207 -MSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 48/192 (25%), Positives = 74/192 (38%), Gaps = 23/192 (11%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225
L+G +GK+TLL LAG L SG++T Y+SQ+ E T
Sbjct: 34 LVGRNGAGKSTLLKILAGELEPD---SGEVTRP--------KGLRVGYLSQEPPLDPEKT 82
Query: 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFA-LGGQKTSLVVEY 284
V + + +G G +++ EL + DE L L G E
Sbjct: 83 VLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEE 137
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
+ LG D V +SGG ++R+ L+ +L +DE +N LD +
Sbjct: 138 ALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEW 191
Query: 345 IIKYLKHSTRAL 356
+ YLK +
Sbjct: 192 LEDYLKRYPGTV 203
|
Length = 530 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 69/269 (25%), Positives = 103/269 (38%), Gaps = 66/269 (24%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L +Y G +S IL +S + +T +LG GKTTLL L +G SG
Sbjct: 3 VSNLNVYYG-QS--HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTL---MGLLPVKSGS 56
Query: 195 ITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
I +G + P + AYV Q +TV E L S+
Sbjct: 57 IRLDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSR-------- 108
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML--KG-- 306
KI PDE ++F +L EML +G
Sbjct: 109 ---KI----PDEIYELF-------------------PVL-----------KEMLGRRGGD 131
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVIS 363
+SGGQ+++L LV ++L +DE + G+ S I I+ L RA G ++
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRL----RAEGGMAILL 187
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPR 392
+ Q A EL D ++ G++V G
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAG 216
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 3e-09
Identities = 67/220 (30%), Positives = 99/220 (45%), Gaps = 42/220 (19%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-QETFARI 903
L +++ R G + AL+G +GAGK+TL+ +L+G G I I G R T A +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMRFASTTAAL 77
Query: 904 -SG----YCEQNDIH-SPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVE---- 952
+G Y E +H P +TV E+L +L +LP + + +R E E +E
Sbjct: 78 AAGVAIIYQE---LHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEAREQLEHLGV 130
Query: 953 -------LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
L LS IG QR+ + IA L N ++ DEPTS L AR
Sbjct: 131 DIDPDTPLKYLS---IG----------QRQMVEIAKALARNARVIAFDEPTSSLSAREIE 177
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ R +R + GR I+ H+ +IF D + K G
Sbjct: 178 QLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDG 216
|
Length = 501 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-09
Identities = 67/237 (28%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 827 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG 886
D+ VE VL+ V + R G L LVG +GAGKTTL+ + G T G
Sbjct: 8 DLSVEFGDTTVLDG-------VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AG 58
Query: 887 DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-----RLPSEIEL---- 937
+ ++G + S + P T L S F R P
Sbjct: 59 TVLVAGDDVEALSARAAS----RRVASVPQDTSL-SFEFDVRQVVEMGRTPHRSRFDTWT 113
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
ET RA VE ME + + + LS +R+R+ +A L ++ +DEPT+
Sbjct: 114 ETDRAAVERAMERTGVAQFADR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAGP 1053
LD + VR +V+ G+T V IH +D+ + DEL+ + G + AGP
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIH--DLDLAARYCDELVLLADGR-VRAAGP 222
|
Length = 402 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-09
Identities = 74/276 (26%), Positives = 112/276 (40%), Gaps = 61/276 (22%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEF 205
T +DD+S I+ LLGP GKTTLL +AG Q SG+I +G +
Sbjct: 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG----FEQPSSGEILLDGEDITD- 71
Query: 206 VPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
VPP R V Q A MTV E + F L K+
Sbjct: 72 VPPEKRPIGMVFQ---SYALFPHMTVEENVAF---------------GL----KVRKKLK 109
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
++ V E ++++GL+ AD +SGGQ++R+
Sbjct: 110 KAEIKAR-------------VEEA-LELVGLEGFADRKPHQ-----LSGGQQQRVALARA 150
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
LV +VL +DE + LD+ Q+ K LK R L G T + + EA + D + +
Sbjct: 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAV 209
Query: 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+++G+I G + + P + VADF+
Sbjct: 210 MNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-09
Identities = 72/259 (27%), Positives = 114/259 (44%), Gaps = 48/259 (18%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---V 206
IL D+S I+ + T ++G SGK+TL L +G SG+I NG K+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLL---VGFFQARSGEILLNGFSLKDIDRHT 545
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ Y+ Q+ + + ++ E L G + V D I IA IK D
Sbjct: 546 LRQFINYLPQEPYIFSG-SILENL-LLGAKENVSQ--DEIWAACE---IAEIKDD----- 593
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
+++ LG Q T L E ISGGQK+R+ L+ ++
Sbjct: 594 -IENMPLGYQ-TELSEEG--------------------SSISGGQKQRIALARALLTDSK 631
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
VL +DE ++ LD+ T +I+ L + L T+I + A + D +I+L G+I
Sbjct: 632 VLILDESTSNLDTITEKKIVNNLLN----LQDKTIIFVAHRLSVA-KQSDKIIVLDHGKI 686
Query: 387 VYQGPRVSVLD---FFASM 402
+ QG +LD F+AS+
Sbjct: 687 IEQGSHDELLDRNGFYASL 705
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 52/204 (25%), Positives = 95/204 (46%), Gaps = 27/204 (13%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS---GYCEQN-- 910
A++G +GAGK+TL R GI++ G + I G P +E + G QN
Sbjct: 34 AVIGPNGAGKSTLF-----RHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPD 88
Query: 911 -DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
I SP TV + + F P + L+ + V + + L +P + L
Sbjct: 89 DQIFSP--TVEQDIAFG-----PINLGLDEE-TVAHRVSSALHMLGLEELRDRVP--HHL 138
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQP 1028
S ++KR+ IA + P ++ +DEPT+GLD + ++ + ++ T G T++ + HQ
Sbjct: 139 SGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ- 197
Query: 1029 SIDIFESFDELLFMKRGGELIYAG 1052
+D+ + +++ G ++ G
Sbjct: 198 -LDLVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 6e-09
Identities = 58/262 (22%), Positives = 103/262 (39%), Gaps = 56/262 (21%)
Query: 135 LRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-- 191
L+ L Y G K+ L +S I ++GP SGK+TLL L G L
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGG-----LDRPT 57
Query: 192 SGKITYNGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
SG++ +G + +A +V Q + ++T E ++
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLL--------- 108
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
+AG+ E + E +++ +GL + E+
Sbjct: 109 ----------LAGVPKKERRE---------------RAEELLERVGLGDRLNHYPS-EL- 141
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
SGGQ++R+ L +++ DE + LDS T ++++ L+ GTT++ +
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLR-ELNKEAGTTIV-V 196
Query: 365 LQPAPEAYELFDDVILLSEGQI 386
+ PE E D +I L +G+I
Sbjct: 197 VTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 6e-09
Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 55/246 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+LDD+S ++ + LGP +GKTT + + G + SG+IT++G +++ +
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEA 70
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R A + + +T RE L ++ GI +
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLA-------------------RLLGI-RKKR--- 106
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
++ ++ ++GL A V KG S G K+RL L+G
Sbjct: 107 ---------------IDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPD 146
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEG 384
+L +DE +NGLD ++ + + S R T +IS LL E ++ D + ++++G
Sbjct: 147 LLILDEPTNGLDPDGIKELRELI-LSLRDQGITVLISSHLLS---EIQKVADRIGIINKG 202
Query: 385 QIVYQG 390
+++ +G
Sbjct: 203 KLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-09
Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 27/172 (15%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKR 896
L +++ + + G L+G SG GKTTL+ ++AG R+T G I +G I+ P +
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTS 955
+ + G Q+ P LTV +++ + L+ + EV E V EL
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAELL- 119
Query: 956 LSGALIGLPGING-----LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
L+GLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 120 ---DLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 50/185 (27%), Positives = 79/185 (42%), Gaps = 30/185 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQN 910
G L L+G +GAGKTTL+ R G+I +G + ++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 911 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ ++ + WLR P + A V + + V LT L+ +
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHI--GWLRRPCVADF----AAVRDALRRVGLTELADRPV 111
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
G LS QR+R+ +A L PS++ +DEP +GLD ++ + G I
Sbjct: 112 G-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAI 166
Query: 1022 VCTIH 1026
+ T H
Sbjct: 167 LMTTH 171
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 7e-09
Identities = 63/252 (25%), Positives = 104/252 (41%), Gaps = 47/252 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
L D+S I P L+GP +GK+TLL L G + SG + +G +
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGK 71
Query: 209 ------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK---IAGIK 259
R + QQ + ++V E + + L RR + G+
Sbjct: 72 ALRQLRRQIGMIFQQFNLIERLSVLENV--------------LSGRLGRRSTWRSLFGLF 117
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
P E+ K AL ++ +GL A D++ SGGQ++R+
Sbjct: 118 PKEE-----KQRAL----------AALERVGLLDKAYQRA-DQL----SGGQQQRVAIAR 157
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ +++ DE LD +++ Q++ LK R T ++SL Q A E D ++
Sbjct: 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216
Query: 380 LLSEGQIVYQGP 391
L +G+IV+ GP
Sbjct: 217 GLKDGRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 7e-09
Identities = 57/220 (25%), Positives = 96/220 (43%), Gaps = 38/220 (17%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
++L ++ + G + ++G SG+GK+TL+ L G G I D G K
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q P LTVLE++ + ++ S+ E ++A E++E V L
Sbjct: 75 LRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAR-EKA--LELLEKVGLADKAD 131
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
LSG Q++R+ IA L +P ++ DEPTS LD V+
Sbjct: 132 AYPAQLSGG-------------QQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESF-----DELLFMKRG 1045
++++ G T++ H ++ F D ++FM +G
Sbjct: 179 MKDLAEEGMTMIIVTH----EM--GFAREVADRVIFMDQG 212
|
Length = 240 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 23/202 (11%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGI-IEGDIYISGYPKRQETFARISGY 906
F G +TA+VG SG+GK+TL++++AG +T G + I G + P + +S
Sbjct: 20 TFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP----VSML 75
Query: 907 CEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
++N++ LTV ++ L S L+L +E R +E + V L+G LP
Sbjct: 76 FQENNLF-AHLTVEQNVGLGLSPGLKLTAE-----DRQAIEVALARV---GLAGLEKRLP 126
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVC 1023
G LS +R+R+ +A LV + ++ +DEP + LD A ++ V ++ T T++
Sbjct: 127 G--ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLM 184
Query: 1024 TIHQPSIDIFESFDELLFMKRG 1045
HQP D ++F+ G
Sbjct: 185 VTHQPE-DAKRLAQRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 8e-09
Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 49/244 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T LDD+S + + LLGP +GKTT + + G + L SG++ ++G +
Sbjct: 14 TALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII---LPDSGEVLFDGKPL-DIAAR 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
Y+ ++ +M V + L + Q +G+ + ARR +D ++
Sbjct: 70 NRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEE------ARRR----------IDEWL 113
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L ++ ++ +S G ++++ ++ +L
Sbjct: 114 ERLELSEYA-----------------------NKRVEELSKGNQQKVQFIAAVIHDPELL 150
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+DE +GLD + LK R L G TVI EL D V+LL++G+
Sbjct: 151 ILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRA 206
Query: 387 VYQG 390
V G
Sbjct: 207 VLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 8e-09
Identities = 59/280 (21%), Positives = 106/280 (37%), Gaps = 42/280 (15%)
Query: 125 NFIFNMTEALLRQLR--IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
N+ + E L+ + + + D+S I + LG +GK+T L L
Sbjct: 12 NYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLT 71
Query: 183 GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G L SGK+ NG P R +R GQ
Sbjct: 72 GL---LLPTSGKVRVNG-----KDPFRRREEY-----------LRSIGLVMGQKLQ---- 108
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+ +L + L++ + + + + ++++ +IL L+ +
Sbjct: 109 --LWWDLPALD---------SLEVLKLIYEIPDDEFAERLDFLTEILDLEG----FLKWP 153
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ K +S GQ+ R L+ P +VLF+DE + GLD + I ++LK TV+
Sbjct: 154 VRK-LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE-RQATVL 211
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ L D V+L+ +GQ+V+ G + + F
Sbjct: 212 LTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPY 251
|
Length = 325 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 8e-09
Identities = 56/194 (28%), Positives = 79/194 (40%), Gaps = 26/194 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L ++ R G + LVG +GAGK+TL+ +AG G G I +G P A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Y Q + V + L L P + E + + EV E + L
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDK----- 119
Query: 962 GLP-GINGLS-TE-QRKRLTIAVELVANPSI------VFMDEPTSGLDARAAAIVMRTVR 1012
L +N LS E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 120 -LGRSVNQLSGGEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLS 177
Query: 1013 NIVNTGRTIVCTIH 1026
+ G +V + H
Sbjct: 178 ELCQQGIAVVMSSH 191
|
Length = 248 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 8e-09
Identities = 61/203 (30%), Positives = 91/203 (44%), Gaps = 27/203 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGII-EGDIYISGYPKRQETF 900
L V + G +L+G SG GK+TL+++++G +GG+I EG P R F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
QN P LTV E++ + LP + E +RA VEE + LV LT +
Sbjct: 61 --------QNYSLLPWLTVRENIALAVDRVLPDLSKSE-RRAIVEEHIALVGLTEAADKR 111
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR- 1019
G LS ++R+ IA L P ++ +DEP LDA + + I R
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1020 TIVCTIHQPSIDIFESFDELLFM 1042
T++ H D+ DE L +
Sbjct: 167 TVLMVTH----DV----DEALLL 181
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 9e-09
Identities = 60/244 (24%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-KEFVPPR 209
+D ++ +R + LGP +GKTT + L L SG G+ +E R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVR 65
Query: 210 TSAYVSQQDWQVAE-MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
S + Q V E +T RE L+ G+ G+ E+ + +
Sbjct: 66 RSIGIVPQYASVDEDLTGRENLEMMGRLYGLPKD-------EAEERAEEL---------L 109
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ F LG D + SGG ++RL L+ VL
Sbjct: 110 ELFELGEA-----------------------ADRPVGTYSGGMRRRLDIAASLIHQPDVL 146
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILLSEGQI 386
F+DE + GLD T I Y+ RAL +G T++ EA +L D + ++ G+I
Sbjct: 147 FLDEPTTGLDPRTRRAIWDYI----RALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRI 202
Query: 387 VYQG 390
+ +G
Sbjct: 203 IAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 9e-09
Identities = 62/220 (28%), Positives = 91/220 (41%), Gaps = 32/220 (14%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISG--YPKR 896
+ L +V PG + AL+G +GAGK+TLM VL+ GI E G I I+ Y K
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLS-----GIHEPTKGTITINNINYNKL 72
Query: 897 QETFARISG----YCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQRAFVE 945
A G Y E + I LTVLE+L R ++ I+ R
Sbjct: 73 DHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAA 127
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
++ V L + LS ++ L IA L+ + ++ MDEPTS L +
Sbjct: 128 MMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + + G IV H+ + +I D MK G
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDG 221
|
Length = 510 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 9e-09
Identities = 56/152 (36%), Positives = 78/152 (51%), Gaps = 16/152 (10%)
Query: 861 VGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917
VG SG GK+TL+ ++AG + I GD++I KR R G Q+ P L
Sbjct: 35 VGPSGCGKSTLLRMIAGLED--ITSGDLFIGE--KRMNDVPPAERGVGMVFQSYALYPHL 90
Query: 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL 977
+V E++ F L + E+ QR V +V E+++L L L P LS QR+R+
Sbjct: 91 SVAENMSFGLKLAGAKKEEIN-QR--VNQVAEVLQLAHL---LDRKP--KALSGGQRQRV 142
Query: 978 TIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
I LVA PS+ +DEP S LDA A + MR
Sbjct: 143 AIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-09
Identities = 58/220 (26%), Positives = 100/220 (45%), Gaps = 15/220 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQ 897
+Q L NV+ G + ++G SGAGK+TL+ ++L +G +I ++ +
Sbjct: 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSE 76
Query: 898 ETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
T AR G Q+ +L S + LP E++ + +V EL+ L L
Sbjct: 77 LTKARRQIGMIFQH------FNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGL 130
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
P + LS Q++R+ IA L +NP ++ DE TS LD ++ ++ I
Sbjct: 131 GDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR 188
Query: 1017 T-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055
G TI+ H+ +D+ + + + + GELI G +
Sbjct: 189 RLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 59/252 (23%), Positives = 94/252 (37%), Gaps = 47/252 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFK 203
L +++ I P ++GP +GK+TLL + RL SG I G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRL--VEPSSGSILLEGTDITKLRGK 72
Query: 204 EFVPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK--- 259
+ R + Q + +TV E + + L + +
Sbjct: 73 KLRKLRRRIGMIFQHYNLIERLTVLENV--------------LHGRLGYKPTWRSLLGRF 118
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
+ED K AL ++ +GL A +SGGQ++R+
Sbjct: 119 SEED-----KERAL----------SALERVGLADKAYQRA-----DQLSGGQQQRVAIAR 158
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L ++ DE LD T+ Q++ YLK + DG TVI L A + D ++
Sbjct: 159 ALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIV 217
Query: 380 LLSEGQIVYQGP 391
L G+IV+ G
Sbjct: 218 GLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 56/233 (24%), Positives = 91/233 (39%), Gaps = 48/233 (20%)
Query: 164 TLLLGPPSSGKTTLLLALAGRL---GHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQD 218
T + G SGKTTL+ +AG + ++G+ T F+PP R YV Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-TLFDSRKGIFLPPEKRRIGYVFQEA 84
Query: 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
++VR L + G K +E
Sbjct: 85 RLFPHLSVRGNLRY-------GMKRARPSERRISF------------------------- 112
Query: 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
E ++++LG+ L G +SGG+K+R+ G L+ R+L MDE LD
Sbjct: 113 ----ERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAALD 163
Query: 339 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
Y+I+ YL+ ++ + E L D V++L +G++ GP
Sbjct: 164 DPRKYEILPYLERLHAEFG-IPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-08
Identities = 56/205 (27%), Positives = 88/205 (42%), Gaps = 24/205 (11%)
Query: 860 LVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916
L+G SG GKTTL+ +LAG + G I+ ++ P R Q+ P
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHL----RHINMVFQSYALFPH 56
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
+TV E++ F +R ++ + V E + LV+L + LS Q++R
Sbjct: 57 MTVEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEF-----ADRKPHQLSGGQQQR 108
Query: 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFES 1035
+ +A LV P I+ +DEP S LD + + ++ I G T V H + S
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 1036 FDELLFMKRG-------GELIYAGP 1053
D + M++G E IY P
Sbjct: 169 -DRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 51/186 (27%), Positives = 92/186 (49%), Gaps = 16/186 (8%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYP--KRQETFA 901
+V+ G + L+G +GAGKTT ++ G +G I+ D I+ P KR A
Sbjct: 22 DVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR----A 77
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R+ GY Q LTV ++++ +R + E ++ ++ ++E +T L +
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE-RKEELDALLEEFHITHLRDS- 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+ LS +R+R+ IA L ANP + +DEP +G+D A + R ++++ + G
Sbjct: 136 ---KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIG 191
Query: 1021 IVCTIH 1026
++ T H
Sbjct: 192 VLITDH 197
|
Length = 243 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 67/236 (28%), Positives = 103/236 (43%), Gaps = 23/236 (9%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGG 882
+E++ + + NVT +TA++G SG GKTTL+ D + G +
Sbjct: 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR--- 60
Query: 883 IIEGDIYISGY----PKRQETFARIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL 937
+EG IY G P+ T R G Q P +++ +++ F R+
Sbjct: 61 -VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSK 116
Query: 938 ETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997
VEE ++ L + + PG LS Q++RL IA L P ++ +DEPTS
Sbjct: 117 HKLDRIVEESLKKAALWDEVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTS 175
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
LD A + + + + + TIV H I + D + FM R GELI GP
Sbjct: 176 ALDPIATQRIEKLLEEL-SENYTIVIVTHNIGQAIRIA-DYIAFMYR-GELIEYGP 228
|
Length = 250 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G R T LD++S ++ + L+GP SGK+TLL A+AG L SG+
Sbjct: 2 IENLSFRYGGR---TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGE 55
Query: 195 ITYNGHGFKEFVPP---RTSAYVSQ 216
I +G + R YV Q
Sbjct: 56 ILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 62/254 (24%), Positives = 99/254 (38%), Gaps = 60/254 (23%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+DD++ I +L+GP SGKTT L + RL SG+I +G + + P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTT-TLKMINRLIEP--TSGEILIDGEDISD-LDP 70
Query: 209 ----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R YV QQ +TV E + + G +E+I
Sbjct: 71 VELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWD-----------KERIKKR------ 113
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
+ ++ ++GLD + D +SGGQ++R VG
Sbjct: 114 -----------------ADELLDLVGLDP---SEYADRYPHELSGGQQQR-------VGV 146
Query: 325 AR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
AR +L MDE LD T Q+ + +K + L G T++ + EA +L D
Sbjct: 147 ARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDIDEALKLADR 205
Query: 378 VILLSEGQIVYQGP 391
+ ++ G+IV
Sbjct: 206 IAVMDAGEIVQYDT 219
|
Length = 309 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 44/162 (27%), Positives = 73/162 (45%), Gaps = 22/162 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ LL +++ G A+VG +GAGK+TL+ +LAG + G + G +
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP--LSGTV-KVGETVKIG 388
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
F ++++ P TVLE L P E E RA++ +G
Sbjct: 389 YFD-----QHRDEL-DPDKTVLEEL----SEGFPDGDEQEV-RAYLGRFG-------FTG 430
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
P + LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 431 EDQEKP-VGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 54/192 (28%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII--EG 886
ELKQ G L ++L N++ + R G A+ G SG GK+TL+ ++A T G + EG
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 887 DIYISGYPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 944
+ + P+ RQ+ YC Q TV ++L+F +R RA
Sbjct: 65 EDVSTLKPEAYRQQV-----SYCAQTPALFGD-TVEDNLIFPWQIR-----NRRPDRAAA 113
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+++ L I I LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LDLLARFAL----PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNK 169
Query: 1005 ----AIVMRTVR 1012
++ R VR
Sbjct: 170 RNIEEMIHRYVR 181
|
Length = 223 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 2e-08
Identities = 60/195 (30%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGY------PKR 896
L +V+ + G + ++G SGAGK+TL+ + G R T G + + G K
Sbjct: 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT----SGSVLVDGTDLTLLSGKE 76
Query: 897 QETFARISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G Q N + S TV E++ LP EI + E V+EL+EL
Sbjct: 77 LRKARRRIGMIFQHFNLLSSR--TVFENVA------LPLEIAGVPKAEIEERVLELLELV 128
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L P LS Q++R+ IA L NP ++ DE TS LD ++ +R+I
Sbjct: 129 GLEDKADAYPA--QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDI 186
Query: 1015 VN--TGRTIVCTIHQ 1027
N G TIV H+
Sbjct: 187 -NRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 62/249 (24%), Positives = 108/249 (43%), Gaps = 30/249 (12%)
Query: 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV 874
+S+ F N++Y ++++G L N++ G ALVG +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 875 LAG--RKTGGIIEGDIYISGYPKRQETFA--------RISGYCEQNDIHSPGLTVLESLL 924
+ + G I I+GY ET ++S + + TVL+ +
Sbjct: 53 FNALLKPSSGTIT----IAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVE 108
Query: 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984
F P A E+ ++ ++ LS LI LS Q +R+ IA +
Sbjct: 109 FG-----PKNFGFSEDEA-KEKALKWLKKVGLSEDLISKSPFE-LSGGQMRRVAIAGVMA 161
Query: 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044
P I+ +DEP +GLD +M+ ++ G T++ H D+ E D++L ++
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 1045 GGELIYAGP 1053
G + +A P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 53/165 (32%), Positives = 79/165 (47%), Gaps = 19/165 (11%)
Query: 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896
LED +N+T G L ++G SG GKTTL++++AG G I + G P
Sbjct: 16 ALED-----INLT--LESGELLVVLGPSGCGKTTLLNLIAGFVPYQ--HGSITLDGKPVE 66
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G QN+ P V +++ F L+L + +E + ++++ V L
Sbjct: 67 GPGAER--GVVFQNEGLLPWRNVQDNVAFG--LQL-AGVEKMQRLEIAHQMLKKVGL--- 118
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
GA I LS QR+R+ IA L ANP ++ +DEP LDA
Sbjct: 119 EGA--EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
|
Length = 255 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 3e-08
Identities = 59/234 (25%), Positives = 92/234 (39%), Gaps = 45/234 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
L +S + P L+GP +GK+TLL L G + G I NG +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPT---EGSIAVNGVPLADADADSW 394
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A+V Q + A T+ E + A + S I E R AG LD F
Sbjct: 395 RDQIAWVPQHPFLFAG-TIAENIRLA---RPDASD-AEIREALER---AG------LDEF 440
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ + G DT +G+ G+SGGQ +RL + A +
Sbjct: 441 VAALPQG--------------------LDTPIGEGG-AGLSGGQAQRLALARAFLRDAPL 479
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
L +DE + LD+ T ++++ L+ G TV+ L+ L D +++L
Sbjct: 480 LLLDEPTAHLDAETEAEVLEALR---ALAQGRTVL-LVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 3e-08
Identities = 64/255 (25%), Positives = 113/255 (44%), Gaps = 53/255 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFVP 207
ILD++S I+P + ++G SGK+TL +L V +G++ +GH P
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRFYVPENGRVLVDGHDLALADP 71
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
A++ +Q V ++E + F R+ IA P ++
Sbjct: 72 ----AWLRRQVGVV----LQENVLFNRSI---------------RDNIALADPGMSMERV 108
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+++ L G ++I + L DT+VG E G+SGGQ++R+ L+ R+
Sbjct: 109 IEAAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRI 159
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 382
L DE ++ LD + + I++ + G TVI + A+ L D +I++
Sbjct: 160 LIFDEATSALDYESEHAIMRNMH---DICAGRTVIII------AHRLSTVKNADRIIVME 210
Query: 383 EGQIVYQGPRVSVLD 397
+G+IV QG +L
Sbjct: 211 KGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 59/249 (23%), Positives = 108/249 (43%), Gaps = 55/249 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
+L D+S I L+GP SGK+TL+ L R + SG+I +GH +++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRF--YDVDSGRILIDGHDVRDYTLAS 73
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R VSQ + F D + E IA +P +
Sbjct: 74 LRRQIGLVSQ-----------DVFLF----------NDTV-----AENIAYGRPGATREE 107
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
++ + + E+IM+ L DT++G+ +K +SGGQ++R+ L+
Sbjct: 108 VEEA-----ARAANAHEFIME---LPEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPP 158
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAPEAYELFDDVILL 381
+L +DE ++ LD+ + + L+ + + TT + S ++ A D +++L
Sbjct: 159 ILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA-------DRIVVL 209
Query: 382 SEGQIVYQG 390
+G+IV +G
Sbjct: 210 EDGKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 3e-08
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 71/195 (36%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDG--- 73
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR------------AF 943
+I+ P + V+E LR + + Q+ A+
Sbjct: 74 --------------KNIYDPKVDVVE-------LR--RRVGMVFQKPNPFPMSIYDNVAY 110
Query: 944 V--------EEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVA 985
+E+ E+VE +SL A L GLS Q++RL IA L
Sbjct: 111 GLRLHGIKDKELDEIVE-SSLKKA--ALWDEVKDRLHKSA-LGLSGGQQQRLCIARALAV 166
Query: 986 NPSIVFMDEPTSGLD 1000
P ++ MDEPTS LD
Sbjct: 167 KPEVLLMDEPTSALD 181
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-08
Identities = 46/186 (24%), Positives = 82/186 (44%), Gaps = 15/186 (8%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETF 900
L + RPG L G +GAGK+TLM +L+G G +G+IY SG P + ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLS 957
Q P L+V E++ + LP RA + ++ ++L + +
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRA--KNLLRELQLDADN 134
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ Q++ + IA L ++ +DEP+S L + I++ +R++
Sbjct: 135 VTR----PVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH 190
Query: 1018 GRTIVC 1023
G + C
Sbjct: 191 G--VAC 194
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 52/195 (26%), Positives = 88/195 (45%), Gaps = 35/195 (17%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV+ R G + +L G +GAGK+TLM VL+G G EG+I G + + I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ---ASNIR 77
Query: 905 GYCEQND---IHS-----PGLTVLESLLFSAWLRLPSEI--------ELETQRAFVEEVM 948
E+ IH L+VLE++ L +EI + RA ++++
Sbjct: 78 D-TERAGIAIIHQELALVKELSVLENIF------LGNEITPGGIMDYDAMYLRA--QKLL 128
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
++L +G G+ Q++ + IA L ++ +DEPT+ L A+++
Sbjct: 129 AQLKLDINPATPVGNLGLG-----QQQLVEIAKALNKQARLLILDEPTASLTESETAVLL 183
Query: 1009 RTVRNIVNTGRTIVC 1023
+R++ G I C
Sbjct: 184 DIIRDLKAHG--IAC 196
|
Length = 506 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 3e-08
Identities = 71/278 (25%), Positives = 117/278 (42%), Gaps = 47/278 (16%)
Query: 815 LSMAFGNINYFVDVPVELKQEGV-LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
+ + N++Y Q G E R L +V G TA +G +G+GK+T+M
Sbjct: 1 MGINLQNVSY-------TYQAGTPFEGRA--LFDVNLTIEDGSYTAFIGHTGSGKSTIMQ 51
Query: 874 VLAGRKT---GGIIEGDIYISGYPKRQE------------TFARISGYCEQNDIHSPGLT 918
+L G G + D I+ K ++ F + E T
Sbjct: 52 LLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEE---------T 102
Query: 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978
VL+ + F S+ E E A E + LV +S +L LS Q +R+
Sbjct: 103 VLKDVAFGPQNFGVSQEEAE---ALAREKLALV---GISESLFEKNPFE-LSGGQMRRVA 155
Query: 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038
IA L P I+ +DEPT+GLD + +M + + +G TIV H +D ++ +
Sbjct: 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHL--MDDVANYAD 213
Query: 1039 LLFMKRGGELIYAG-PLGSKSCELIKYFEAVE-GVPKI 1074
+++ G+L+ +G P + + + E + GVPKI
Sbjct: 214 FVYVLEKGKLVLSGKP--KDIFQDVDFLEEKQLGVPKI 249
|
Length = 280 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 46/198 (23%), Positives = 68/198 (34%), Gaps = 47/198 (23%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202
R + T+ DLS + + GP +GKTTLL LAG L +G++ + G
Sbjct: 10 CERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAG-LLR--PDAGEVYWQGEPI 66
Query: 203 KEF--VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ + Y+ Q E+T E L F + G G+
Sbjct: 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN---------------AATI 111
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
E L GL D VG +S GQ++R+ L
Sbjct: 112 WEALAQV----------------------GLAGLEDLPVGQ-----LSAGQQRRVALARL 144
Query: 321 LVGPARVLFMDEISNGLD 338
+ PA + +DE LD
Sbjct: 145 WLSPAPLWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 65/259 (25%), Positives = 106/259 (40%), Gaps = 63/259 (24%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
+R + IL LS I P + L+G GK+T++ +L R + SG+I +G +
Sbjct: 12 SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERF--YDPTSGEILLDGVDIR 68
Query: 204 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE-KIAGIK 259
+ VSQ+ + + T+ E + + K D E K A I
Sbjct: 69 DLNLRWLRSQIGLVSQEP-VLFDGTIAENIRY--------GKPDATDEEVEEAAKKANI- 118
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTT 317
F+ S G DTLVG+ +G +SGGQK+R+
Sbjct: 119 -----HDFIMSLPDGY--------------------DTLVGE---RGSQLSGGQKQRIAI 150
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEA 371
L+ ++L +DE ++ LD+ + + + L RA+ G T I S ++ A
Sbjct: 151 ARALLRNPKILLLDEATSALDAESEKLVQEALD---RAMKGRTTIVIAHRLSTIRNA--- 204
Query: 372 YELFDDVILLSEGQIVYQG 390
D + +L GQ+V QG
Sbjct: 205 ----DLIAVLQNGQVVEQG 219
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-08
Identities = 71/282 (25%), Positives = 107/282 (37%), Gaps = 79/282 (28%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI 195
R L + G R T+LDD+S +RP + +LGP +GK+TLL AL+G L SG++
Sbjct: 6 RNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEV 59
Query: 196 TYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
NG ++ P R A + Q +L F
Sbjct: 60 RLNGRPLADWSPAELARRRAVLPQH----------SSLSFP---------------FTVE 94
Query: 253 EKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD----TLVGDEMLKGI 307
E +A G P L + +V + + L A L
Sbjct: 95 EVVAMGRAP----------HGLSRAEDDALVAAALAQVDLAHLAGRDYPQL--------- 135
Query: 308 SGGQKKR------LTTGELLVGPARVLFMDEISNGLDSS---TTYQIIKYLKHSTRALDG 358
SGG+++R L GP R L +DE ++ LD + ++ + L H G
Sbjct: 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHE----RG 191
Query: 359 TTVISLL----QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
VI +L A A D ++LL +G++V G VL
Sbjct: 192 LAVIVVLHDLNLAARYA----DRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-08
Identities = 60/221 (27%), Positives = 95/221 (42%), Gaps = 25/221 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFA 901
NV+ + G + +VG SGAGKTTL ++AG T G + GD ++ +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 902 RISGYC----EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R Y ++ D++ P TVL++L + L LP EL +A + M +
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPD--ELARMKAVITLKMVGFDEEKAE 418
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
L P + LS +R R+ +A L+ P IV +DEPT +D I V + +
Sbjct: 419 EILDKYP--DELSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDVTHSILK 472
Query: 1018 GR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
R T + H + + D M R G+++ G
Sbjct: 473 AREEMEQTFIIVSHDMDF-VLDVCDRAALM-RDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 46/252 (18%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARI 903
+V+ R G + ++G+SG+GK+TL+ R +IE G + I G + +
Sbjct: 42 DVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRKEL 96
Query: 904 S-------GYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS 955
Q+ P TVLE++ F ++ +P E RA E +ELV L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREE--RA--AEALELVGLEG 152
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARAAAIVMRTV 1011
+ LS ++R+ +A L +P I+ MDE S LD ++R
Sbjct: 153 WEHKYP-----DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQ 207
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAGP----LGSKSCELIKY 1064
+ +TIV H D+ E+ D + MK G L+ G L + + + ++
Sbjct: 208 AEL---QKTIVFITH----DLDEALRLGDRIAIMK-DGRLVQVGTPEEILTNPANDYVRE 259
Query: 1065 FEAVEGVPKIRP 1076
F GV + +
Sbjct: 260 F--FRGVDRAKV 269
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-08
Identities = 58/217 (26%), Positives = 97/217 (44%), Gaps = 34/217 (15%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ +L +T PG + ALVG SG+GK+T+ +L + TGG + + G P Q
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG----QVLLDGVPLVQ-- 547
Query: 900 FARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+ + +H L E +LFS +R I EE+M + +
Sbjct: 548 -------YDHHYLHRQVALVGQEPVLFSGSVR--ENIAYGLTDTPDEEIMAAAKAANAHD 598
Query: 959 ALIGLP-GING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
++ P G + LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + RT++ H+ S E D++L +K+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 69/258 (26%), Positives = 104/258 (40%), Gaps = 56/258 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----K 203
T+L LS ++T L+G SGK+TLL L GR H G+I + K
Sbjct: 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GR--HQPPSEGEILLDAQPLESWSSK 81
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR-----REKIAGI 258
F R AY+ QQ MTVRE + +G +Y L R REK
Sbjct: 82 AFA--RKVAYLPQQLPAAEGMTVRELV-------AIG-RYPWHGALGRFGAADREK---- 127
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
VE + ++GL A LV +SGG+++R
Sbjct: 128 -----------------------VEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIA 159
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
L+ +R L +DE ++ LD + ++ L H G TVI++L A D +
Sbjct: 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLA-LVHRLSQERGLTVIAVLHDINMAARYCDYL 218
Query: 379 ILLSEGQIVYQGPRVSVL 396
+ L G+++ QG ++
Sbjct: 219 VALRGGEMIAQGTPAELM 236
|
Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 33/200 (16%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGYCEQNDIHSP 915
L+G +GAGK+TL+ +LA GI G + + G R+S +P
Sbjct: 52 GLIGRNGAGKSTLLRLLA-----GIYPPDSGTVTVRG---------RVSSLLGLGGGFNP 97
Query: 916 GLTVLESLLFSAWL--RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
LT E++ + L EI ++E++E EL G I LP + S+
Sbjct: 98 ELTGRENIYLNGRLLGLSRKEI-----DEKIDEIIEFSEL----GDFIDLP-VKTYSSGM 147
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033
+ RL A+ P I+ +DE + DA R +R ++ G+T++ H
Sbjct: 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSH--DPSSI 205
Query: 1034 ESF-DELLFMKRGGELIYAG 1052
+ D L +++ G++ + G
Sbjct: 206 KRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 7e-08
Identities = 67/254 (26%), Positives = 105/254 (41%), Gaps = 54/254 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+++DLS I LLGP +GK+T+ L LG GKIT G E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARML---LGMISPDRGKITVLG----EPVPSR 71
Query: 210 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V Q D E TVRE +
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRE----------------------------------N 97
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L +F + F + ++ V+ +++ L++ AD V +SGG K+RLT L+
Sbjct: 98 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
++L +DE + GLD + I + L+ S A G T++ EA L D + +L
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLR-SLLAR-GKTILLTTHFMEEAERLCDRLCVLES 210
Query: 384 GQIVYQGPRVSVLD 397
G+ + +G +++D
Sbjct: 211 GRKIAEGRPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 54/275 (19%), Positives = 92/275 (33%), Gaps = 64/275 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G + L+++S I ++G SGK+TL LAG SG I +G
Sbjct: 13 YGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDG- 68
Query: 201 GFKEFVP-PRTSAYVSQ-----QD-------WQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
K P R A+ QD + + E L G + +++
Sbjct: 69 --KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLD 126
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
++ +P E +
Sbjct: 127 QVGLPPSFLDRRPHE--------------------------------------------L 142
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++R+ L+ ++L +DE ++ LD S QI+ L + G T + +
Sbjct: 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHD 201
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ D + ++ GQIV GP +L +
Sbjct: 202 LALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-08
Identities = 62/244 (25%), Positives = 93/244 (38%), Gaps = 65/244 (26%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+ L N+ +TAL+G SG GK+TL+ D++ G + IEG + G
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR----IEGKVLFDG--- 67
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI------ELETQ---- 940
DI+ + V+E ++F P I
Sbjct: 68 --------------QDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKD 113
Query: 941 RAFVEEVMELVELTSLSGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVF 991
+ ++E++E SL A L GLS Q++RL IA L P ++
Sbjct: 114 KKELDEIVE----ESLKKA--ALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLL 167
Query: 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH--QPSIDIFESFDELLFMKRGGELI 1049
+DEPTS LD A + ++ + TIV H Q + I D F GEL+
Sbjct: 168 LDEPTSALDPIATGKIEELIQEL-KKKYTIVIVTHNMQQAARI---SDRTAFFYD-GELV 222
Query: 1050 YAGP 1053
GP
Sbjct: 223 EYGP 226
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-08
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 41/179 (22%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 897
NV R + +L+G +GAGKTT+ + L G + TGG I +I G P Q
Sbjct: 23 NVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLL-----------FSAWLRLP----SEIELETQR 941
TF + + E +TV+E+LL FS L+ P +E E +
Sbjct: 83 VRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRA 134
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A E + L+E + L+ Q++RL IA +V P I+ +DEP +GL+
Sbjct: 135 ATWLERVGLLEHANRQAG--------NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLN 185
|
Length = 255 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 51/189 (26%), Positives = 90/189 (47%), Gaps = 12/189 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 899
Q+L N+ G + ++G SG+GK+TL+ + L +G +I + ++ PK E
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVND-PKVDER 73
Query: 900 FARI-SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R +G Q P LT LE+++F P + ++ ++ EL+ L+
Sbjct: 74 LIRQEAGMVFQQFYLFPHLTALENVMFG-----PLRVRGASKEEAEKQARELLAKVGLAE 128
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P + LS Q++R+ IA L P ++ DEPTS LD V++ ++++ G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1019 RTIVCTIHQ 1027
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 52/195 (26%), Positives = 93/195 (47%), Gaps = 17/195 (8%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + A++G SGAGK+TL++++AG G I D +G Q + + + E N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSML--FQENNL 81
Query: 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
LTV +++ L L ++L ++ E+V++ + ++ L LP LS
Sbjct: 82 F--AHLTVRQNI----GLGLHPGLKLNAEQQ--EKVVDAAQQVGIADYLDRLP--EQLSG 131
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 1030
QR+R+ +A LV I+ +DEP S LD ++ V+ + + RT++ H S
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS- 190
Query: 1031 DIFESFDELLFMKRG 1045
D ++ + +G
Sbjct: 191 DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 8e-08
Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 43/220 (19%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
+L NV+ + G +VG +GAGK+TL +LA + EG I I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDGI--------- 70
Query: 903 ISGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVEL 953
DI + L L S LFS +R + E EE+ + +
Sbjct: 71 --------DISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRV 119
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 120 SE---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIRE 170
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T TI+ H+ I +D++L M G Y P
Sbjct: 171 EF-TNSTILTIAHRLRTII--DYDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 1e-07
Identities = 65/264 (24%), Positives = 109/264 (41%), Gaps = 55/264 (20%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SG 193
+ + G + +LDD+S I +T ++GP +GK+TLL ++ RL L+ SG
Sbjct: 4 IENVSKSYGTK---VVLDDVSLDIPKGGITSIIGPNGAGKSTLL-SMMSRL---LKKDSG 56
Query: 194 KITYNGH---GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQ---CQGVGSKYDMIT 247
+IT +G + + + Q++ + +TVR+ + F G+ QG +K D
Sbjct: 57 EITIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGF-GRFPYSQGRLTKED--- 112
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
R I +EY + + L D L +
Sbjct: 113 ----RRIINE-----------------------AIEY-LHLEDLS--------DRYLDEL 136
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++R +L + +DE N LD + QI+K L+ L T V+ +L
Sbjct: 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVV-VLHD 195
Query: 368 APEAYELFDDVILLSEGQIVYQGP 391
A D ++ L G++V QG
Sbjct: 196 INFASCYSDHIVALKNGKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 63/249 (25%), Positives = 101/249 (40%), Gaps = 58/249 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+++ LS + LLGP +GK+T+ + LG +GKIT G VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMI---LGMTSPDAGKITVLG----VPVPAR 108
Query: 210 TSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V Q D E TVRE +
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRE----------------------------------N 134
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L +F + F + ++ V+ +++ L++ AD V D +SGG K+RLT L+
Sbjct: 135 LLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVISLLQPAPEAYELFDDVILL 381
++L +DE + GLD + I + L R+L G T++ EA L D + +L
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERL----RSLLARGKTILLTTHFMEEAERLCDRLCVL 245
Query: 382 SEGQIVYQG 390
G+ + +G
Sbjct: 246 EAGRKIAEG 254
|
Length = 340 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 48/208 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E Q+L N++ + G AL+G SG+GK+TL+ +L G +G+I + G P
Sbjct: 12 EQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVP---- 65
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+S + L S I + QR + L + T +
Sbjct: 66 ----VSDLEKA---------------------LSSLISVLNQRPY------LFDTTLRNN 94
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+G S +R+RL +A L+ + IV +DEPT GLD ++ + V
Sbjct: 95 --LGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-VLKD 147
Query: 1019 RTIV-CTIHQPSIDIFESFDELLFMKRG 1045
+T++ T H I E D++LF++ G
Sbjct: 148 KTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 65/278 (23%), Positives = 111/278 (39%), Gaps = 46/278 (16%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKE 204
LT+LD L+ + L+GP SGK+T+L + L +QV G+ Y+ G
Sbjct: 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNG 72
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
+ P ++ Q ++ M + F + D +TE G+ E
Sbjct: 73 PLVPADEKHLRQMRNKIG-MVFQSFNLFPHKTV-----LDNVTEAPVLVL--GMARAEAE 124
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
M+ ++ ++GL AD D M +SGGQ++R+ L
Sbjct: 125 KRAME---------------LLDMVGL---ADKA--DHMPAQLSGGQQQRVAIARALAMR 164
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE---AYELFDDVILL 381
+V+ DE+++ LD +++ + R L +++L E A E D V
Sbjct: 165 PKVMLFDEVTSALDPELVGEVLNVI----RRLASEHDLTMLLVTHEMGFAREFADRVCFF 220
Query: 382 SEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
+G+IV QG + F PK + +FL +V
Sbjct: 221 DKGRIVEQGKPDEI--------FRQPKEERTREFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 55/209 (26%), Positives = 91/209 (43%), Gaps = 22/209 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ--N 910
PG ALVG SG+GK+TL++++ + G I + G+ T A +
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-IGLP---GI 966
D+ T+ ++ + + + RA +E + L +GL G
Sbjct: 414 DVVLFNDTIANNIAYGR----TEQAD----RAEIERALAAAYAQDFVDKLPLGLDTPIGE 465
Query: 967 NG--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
NG LS QR+RL IA L+ + I+ +DE TS LD + +V + ++ GRT +
Sbjct: 466 NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVI 524
Query: 1025 IHQPSIDIFESFDELLFMKRGGELIYAGP 1053
H+ S E D ++ M G ++ G
Sbjct: 525 AHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 28/211 (13%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYP-----KRQETFARISGY 906
G +TA++G +GAGK+TL L GI++ G I G P K G
Sbjct: 32 GEVTAILGGNGAGKSTLFQNL-----NGILKPSSGRILFDGKPIDYSRKGLMKLRESVGM 86
Query: 907 CEQNDIHSP-GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
Q+ + +V + + F A L+LP E E ++ V+ ++ + L
Sbjct: 87 VFQDPDNQLFSASVYQDVSFGAVNLKLP---EDEVRKR-VDNALKRTGIEHLKDK----- 137
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVC 1023
+ LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + + G TI+
Sbjct: 138 PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIII 197
Query: 1024 TIHQPSIDIFESF-DELLFMKRGGELIYAGP 1053
H IDI + D + MK G ++ P
Sbjct: 198 ATH--DIDIVPLYCDNVFVMKEGRVILQGNP 226
|
Length = 283 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 59/249 (23%), Positives = 104/249 (41%), Gaps = 55/249 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG----HGFKEFV 206
L ++ I+ +T +LG +GK+TL L G L SG+I ++G + K +
Sbjct: 22 LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGLM 78
Query: 207 PPRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R S + Q D Q+ +V + + F + E+ +R
Sbjct: 79 KLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-----EVRKR------------ 121
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V+ +K G++ + D+ +S GQKKR+ +LV
Sbjct: 122 -----------------VDNALKRTGIEH-----LKDKPTHCLSFGQKKRVAIAGVLVME 159
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL--LQPAPEAYELF-DDVILL 381
+VL +DE + GLD +I+K L + L T +I+ + P L+ D+V ++
Sbjct: 160 PKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVP----LYCDNVFVM 215
Query: 382 SEGQIVYQG 390
EG+++ QG
Sbjct: 216 KEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-07
Identities = 57/214 (26%), Positives = 95/214 (44%), Gaps = 24/214 (11%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
R +L ++ G A+VG SGAGK+T++ +L + + G I I G
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLF--RFYDVNSGSITIDGQ------- 325
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
I +Q+ + G+ +++LF+ + I+ A EEV E + +
Sbjct: 326 -DIRDVTQQSLRRAIGIVPQDTVLFNDTIA--YNIKYGRPDATAEEVGAAAEAAQIHDFI 382
Query: 961 IGLP-------GINGL--STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
LP G GL S +++R+ IA ++ NP I+ +DE TS LD + +
Sbjct: 383 QSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAAL 442
Query: 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
R V+ GRT + H+ S I DE++ + G
Sbjct: 443 R-EVSAGRTTLVIAHRLSTII--DADEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 51/252 (20%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+D++S + P + LLGP +GKTT + G L G+IT+NG + +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEI 70
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R Y+ ++ +MTV + L + + +G+ + +I + L
Sbjct: 71 KNRI-GYLPEERGLYPKMTVEDQLKYLAELKGM-----------PKAEIQ-----KKLQA 113
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
+++ + G+KT + E+ KG QK + + ++
Sbjct: 114 WLERLEIVGKKTKKI-------------------KELSKGNQ--QKIQFISA--VIHEPE 150
Query: 327 VLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE +GLD I LK G T+I EL D +++L +
Sbjct: 151 LLILDEPFSGLDPVNVELLKDAIFELKEE-----GATIIFSSHRMEHVEELCDRLLMLKK 205
Query: 384 GQIVYQGPRVSV 395
GQ V G +
Sbjct: 206 GQTVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 48/226 (21%), Positives = 88/226 (38%), Gaps = 44/226 (19%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEM 224
++GP +GK+TLL +AG + SG I N P R + + Q++ A +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 284
TVR+ + G+ P +K A +K V
Sbjct: 86 TVRQNIGL------------------------GLHPG------LKLNAEQQEK----VVD 111
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
+ +G+ D L +SGGQ++R+ LV P +L +DE + LD +
Sbjct: 112 AAQQVGIADYLDRLPEQ-----LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREE 166
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
++ +K T ++ + +A + + ++S+G+I
Sbjct: 167 MLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 50/172 (29%), Positives = 77/172 (44%), Gaps = 29/172 (16%)
Query: 861 VGVSGAGKTTLMDVLAGR--KTGGIIE-GDIYISGYP--KRQETFARI-----SGYCEQN 910
+G +GAGK+TL++ +AG T G I + ++ KR AR+ +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 911 DIHSPGLTVLESLLFSAWLR-----LPSEIELETQRAFVEEVMELVE-LTSLSGALIGLP 964
P LT+ E+L A R L S + + +F E + L L + IGL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
LS QR+ L++ + + P I+ +DE T+ LD + A VM IV
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVE 196
|
Length = 263 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 68/299 (22%), Positives = 118/299 (39%), Gaps = 58/299 (19%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
SK L+D+S I T L+G SGK+T+ + G L + KIT +G
Sbjct: 18 SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 206 ----VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ + D Q TV + + F + + V R ++ I D
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVP-----------RPEMIKIVRD 126
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGEL 320
D+ M + D +SGGQK+R+ G L
Sbjct: 127 VLADVGMLDYI----------------------------DSEPANLSGGQKQRVAIAGIL 158
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
V P +++ +DE ++ LD + QI+K ++ + + TVIS+ EA + D V++
Sbjct: 159 AVEP-KIIILDESTSMLDPAGKEQILKLIRKLKKK-NNLTVISITHDIDEA-NMADQVLV 215
Query: 381 LSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFL--------QEVTSKKDQEQY 428
L +G+++ QG V + + +G P + + L QE+ +++ QY
Sbjct: 216 LDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEKGISVPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 46/152 (30%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR--ISGYCEQN 910
G A++G SGAGK+TL++++AG T G + ++G +R +S ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 911 DIHSPGLTVLE--SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
++ LTV + L + L+L + QR + + + + L L LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA-----QREKLHAIARQMGIEDL---LARLPG--Q 129
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-07
Identities = 71/313 (22%), Positives = 111/313 (35%), Gaps = 70/313 (22%)
Query: 109 VESFVHLGSRALPTIPNFIFNMTEALLR--------QLRIYRGNRSKLTI--LDDLSGII 158
+ + LG + +P E LL R R + + +DD+S +
Sbjct: 255 LAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL 314
Query: 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFVPPRTSAYV 214
R L+G SGK+TL LAG L SG I ++G E R +
Sbjct: 315 REGETLGLVGESGSGKSTLARILAGLL---PPSSGSIIFDGQDLDLTGGELRRLRRRIQM 371
Query: 215 SQQDWQVA---EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSF 271
QD + MTV + L E L I
Sbjct: 372 VFQDPYSSLNPRMTVGDILA------------------------------EPLRIHGG-- 399
Query: 272 ALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMD 331
G + V +++++GL E+ SGGQ++R+ L ++L +D
Sbjct: 400 -GSGAERRARVAELLELVGLPPEFLDRYPHEL----SGGQRQRVAIARALALEPKLLILD 454
Query: 332 EISNGLDSSTTYQIIKYLKHSTRALDGTTV-IS-----LLQPAPEAYELFDDVILLSEGQ 385
E + LD S Q++ LK L T + IS + A D V ++ +G+
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA-------DRVAVMYDGR 507
Query: 386 IVYQGPRVSVLDF 398
IV +GP V +
Sbjct: 508 IVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 48/208 (23%), Positives = 67/208 (32%), Gaps = 55/208 (26%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VS 192
R L RG R + + LS + + GP GKTTLL LAG L S
Sbjct: 3 ARNLACSRGER---MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAG-----LLRPDS 54
Query: 193 GKITYNG--HGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
G++ +NG + P R Y+ E++ E L F
Sbjct: 55 GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHF------------------ 96
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
A I I + V GL D +S G
Sbjct: 97 ----WAAIHGGAQRTIE--------DALAAV--------GLTGFEDLPAAQ-----LSAG 131
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLD 338
Q++RL L + A + +DE + LD
Sbjct: 132 QQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 3e-07
Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 70/273 (25%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+R + G+R ILD + + + +LG SGK+TLL + G L G+
Sbjct: 11 VRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL---RPDKGE 64
Query: 195 ITYNGHGFKEFVPPRTSA------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITE 248
I +G + + QQ + +TV E + F + E
Sbjct: 65 ILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLRE 112
Query: 249 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308
+ P+ + L K LV GL A L E +S
Sbjct: 113 HTK-------LPESLIR------ELVLMKLELV--------GLRGAAADLYPSE----LS 147
Query: 309 GGQKKRLTTGELLVGPAR-------VLFMDEISNGLD--SSTTY-QIIKYLKHSTRALDG 358
GG +KR V AR +LF+DE ++GLD S+ ++I+ L + G
Sbjct: 148 GGMRKR-------VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDAL----G 196
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
TVI + + D V +L++G+++ +G
Sbjct: 197 LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGT 229
|
Length = 263 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 59/227 (25%), Positives = 89/227 (39%), Gaps = 65/227 (28%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI------IEGDIYISGYPKRQ 897
+L +++ PG +TAL+G +GAGK+TL+ LAG TGG + GD+ ++G P
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL---- 953
I +P L L ++L A Q AF E+V L
Sbjct: 76 --------------IDAPRLARLRAVLPQA-----------AQPAFAFSAREIVLLGRYP 110
Query: 954 -TSLSGAL-----------IGLPG--------INGLSTEQRKRLTIAVEL---------V 984
+GAL + L G + LS + R+ A L
Sbjct: 111 HARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170
Query: 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQPSI 1030
P + +DEPT+ LD ++ TVR + V I H P++
Sbjct: 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNL 217
|
Length = 272 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 3e-07
Identities = 34/162 (20%), Positives = 51/162 (31%), Gaps = 50/162 (30%)
Query: 175 TTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETL 230
+TLL + G L SG I +G + V Q E+TVRE L
Sbjct: 1 STLLKLITGLL---QPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290
F G++ E E ++ +G
Sbjct: 58 FF------------------------GLRDKEADA---------------RAEEALERVG 78
Query: 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
L D + SGGQK+R+ L+ ++L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 3e-07
Identities = 36/124 (29%), Positives = 61/124 (49%), Gaps = 18/124 (14%)
Query: 287 KILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII 346
KI+ DT+VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T +I
Sbjct: 119 KIMRFPDGYDTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177
Query: 347 KYLKHSTRALDGTTVISLLQPAPEAYELF-----DDVILLSEGQIVYQGPRVSVLD---F 398
L+ G T I + A+ L D +I+L +G+IV +G +L
Sbjct: 178 AALR---DVSKGRTTIVI------AHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGL 228
Query: 399 FASM 402
+A M
Sbjct: 229 YAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 3e-07
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 46/229 (20%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-------G 892
D ++L N++ G + ++G SGAGK+ LM VL G G I G
Sbjct: 11 DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCG 70
Query: 893 YPKRQETFARISGYC----EQNDIHSPGL--------------------------TVLES 922
Y +R C E ++ L TVL++
Sbjct: 71 YVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDN 130
Query: 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE 982
+L + L EI E + A V ++L+E+ LS + + LS +++R+ +A +
Sbjct: 131 VLEA----LE-EIGYEGKEA-VGRAVDLIEMVQLSHRITHIA--RDLSGGEKQRVVLARQ 182
Query: 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSI 1030
L P + DEPT LD + A +V + V +G ++V T H P +
Sbjct: 183 LAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV 231
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-07
Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 21/203 (10%)
Query: 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN-DIH 913
TAL+G +GAGK+TL+ L G G + + G E + G Q+ D
Sbjct: 34 TALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQ 91
Query: 914 SPGLTVLESLLFSAW-LRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
TV + + F + L E+E +R VEE ++ V + LS
Sbjct: 92 VFSSTVWDDVAFGPVNMGLDKDEVE---RR--VEEALKAVRMWDFRDK-----PPYHLSY 141
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID 1031
Q+KR+ IA L +P ++ +DEP + LD R +M + + N G+T++ H +D
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATH--DVD 199
Query: 1032 IFESF-DELLFMKRGGELIYAGP 1053
+ + D+++ +K G L
Sbjct: 200 LAAEWADQVIVLKEGRVLAEGDK 222
|
Length = 274 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-07
Identities = 56/234 (23%), Positives = 99/234 (42%), Gaps = 48/234 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPK 895
L NV+ G A++G +G+GK+T+ +L G++ G+I I G
Sbjct: 19 NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILT-----GLLKPQSGEIKIDGITI 73
Query: 896 RQETFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRL--PSEIELETQRAFVEEVME 949
+E I G QN D G TV + + F + P ++ + ++++ +
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKM-----KDIIDDLAK 128
Query: 950 LV--------ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V E +LSG Q++R+ IA L NP I+ DE TS LD
Sbjct: 129 KVGMEDYLDKEPQNLSGG-------------QKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 1002 RAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESF--DELLFMKRGGELIYAG 1052
+ + + + ++ T +T++ H D+ E+ D+++ G+LI G
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-07
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 28/156 (17%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE--GDIYISG-----YPKRQETFARIS 904
G+ TAL G SG+GKT+L++++AG R G IE G + + P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEK----RRI 78
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
GY Q+ P TV +L + W + ++ + +LV L + L P
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDRYP 126
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
G LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 G--TLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 4e-07
Identities = 70/300 (23%), Positives = 118/300 (39%), Gaps = 64/300 (21%)
Query: 139 RIYRGNRSKLTI-LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKI 195
+ + + LDD+S I + ++G +GK+TLL RL + L+ SG +
Sbjct: 9 KTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLL-----RLINLLERPTSGSV 63
Query: 196 TYNGHGFKEFVPP------RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
+G + + Q ++ TV E + F + GV K E+
Sbjct: 64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGV-PK----AEI 118
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
+R V E + +++GL AD +SG
Sbjct: 119 KQR----------------------------VAELL-ELVGLSDKADRYPAQ-----LSG 144
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQK+R+ L ++L DE ++ LD TT I++ LK R L G T++ L+
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIV-LITHEM 202
Query: 370 EAYELF-DDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428
E + D V +L +G++V +G V + FA+ PK +F+ E E+
Sbjct: 203 EVVKRICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEEL 254
|
Length = 339 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 4e-07
Identities = 54/232 (23%), Positives = 93/232 (40%), Gaps = 43/232 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYP----- 894
L+ ++ + + G + ALVG SG+GK+ ++ +L T G+I + G P
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRL-----PSEIELETQRAF---- 943
R A I QN + P T+ + + + LE A
Sbjct: 59 IRGRHIATIM----QNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPD 114
Query: 944 VEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
EEV++ LSG ++ +R+ IA+ L+ P + DEPT+ LD
Sbjct: 115 PEEVLKKYPF-QLSGGML-------------QRVMIALALLLEPPFLIADEPTTDLDVVN 160
Query: 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
A V++ +R + G I+ H + + DE+ M G ++ G +
Sbjct: 161 QARVLKLLRELRQLFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 61/215 (28%), Positives = 92/215 (42%), Gaps = 35/215 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 901
L +V+ + G A+VG +G+GK+TL +L G++ G I + G +ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLL-----NGLLLPEAGTITVGGMVLSEETVW 77
Query: 902 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQ----RAFVEEVMELVEL 953
+ G QN D G TV + + F LE VE V + +
Sbjct: 78 DVRRQVGMVFQNPDNQFVGATVQDDVAFG----------LENIGVPREEMVERVDQALRQ 127
Query: 954 TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
+ L P + LS Q++R+ IA L P I+ +DE TS LD R V+ TVR
Sbjct: 128 VGMEDFLNREP--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQ 185
Query: 1014 IVNTGRTIVCTI-HQPSIDIFE--SFDELLFMKRG 1045
+ V +I H D+ E D ++ M +G
Sbjct: 186 LKEQKGITVLSITH----DLDEAAQADRVIVMNKG 216
|
Length = 279 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 68/240 (28%), Positives = 105/240 (43%), Gaps = 44/240 (18%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPP 208
+L+D+S I ++ LLGP SGKTTLL +AG L H Q SG I ++G
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEH--QTSGHIRFHGTDVSRLHARD 73
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK--IAGIKPDEDLDI 266
R +V Q MTV + + F +T L RRE+ A IK
Sbjct: 74 RKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRERPNAAAIK------- 114
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
K V +++++ L AD +SGGQK+R+ L +
Sbjct: 115 ---------AK----VTQLLEMVQLAHLADRYPAQ-----LSGGQKQRVALARALAVEPQ 156
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE LD+ ++ ++L+ L T+V + EA E+ D V+++S+G I
Sbjct: 157 ILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVF-VTHDQEEAMEVADRVVVMSQGNI 215
|
Length = 353 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-07
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 60/260 (23%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITY 197
+IY K+ L D++ I ++GP SGK+T LL L G L + SG++
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKST-LLNLLGGL---DKPTSGEVLI 64
Query: 198 NGHGFKEFVPPRTSA-------YVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELA 250
NG + + +V Q + ++TV E ++ G +
Sbjct: 65 NGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAG-------R 117
Query: 251 RREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310
R+ E ++++LGL+ E+ SGG
Sbjct: 118 RKRAA---------------------------EELLEVLGLEDRLLKKKPSEL----SGG 146
Query: 311 QKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA- 368
Q++R+ L+ +++ DE N LDS T ++++ L+ + T ++
Sbjct: 147 QQQRVAIARALINNPKIILADEPTGN-LDSKTAKEVLELLRELNKERGKTIIM-----VT 200
Query: 369 --PEAYELFDDVILLSEGQI 386
PE + D VI L +G+I
Sbjct: 201 HDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 5e-07
Identities = 64/233 (27%), Positives = 98/233 (42%), Gaps = 42/233 (18%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGY 906
RPG ALVG SGAGK+TL +L + G I + G RQ E AR++
Sbjct: 362 TVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAELRARMA-- 417
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 964
L + +LF+A + I A EEV + LP
Sbjct: 418 ----------LVPQDPVLFAASVM--ENIRYGRPDATDEEVEAAARAAHAHEFISALPEG 465
Query: 965 --------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
G+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + ++
Sbjct: 466 YDTYLGERGV-TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM- 523
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG--------GELIYAGPLGSKSCEL 1061
GRT + H+ + + D ++ M +G ELI G L ++ L
Sbjct: 524 KGRTTLIIAHRLATVL--KADRIVVMDQGRIVAQGTHAELIAKGGLYARLARL 574
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 57/206 (27%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII----EGD 887
Q GV RL +L NV+ G AL G SGAGK+TL+ L G I EG
Sbjct: 16 QGGV---RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGA 72
Query: 888 -IYISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV 944
+ ++ R+ R GY Q P ++ LE + L E RA
Sbjct: 73 WVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPL-LERGVPREAARARA-- 129
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
EL+ ++ L LP S +++R+ IA +A+ I+ +DEPT+ LDA
Sbjct: 130 ---RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 1005 AIVMRTVRNIVNTGRTIVCTIHQPSI 1030
+V+ + G ++ H +
Sbjct: 186 QVVVELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 5e-07
Identities = 49/183 (26%), Positives = 72/183 (39%), Gaps = 33/183 (18%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
G + G +GAGKTTL+ VLAG G I I G + +R Y H
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLG----H 89
Query: 914 SPGL----TVLESLLFSAWL------RLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
PGL + LE+L F L ++P + +V L L+
Sbjct: 90 LPGLKADLSTLENLHFLCGLHGRRAKQMPGS------------ALAIVGLAGYEDTLV-- 135
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
LS Q+KRL +A ++ + +DEP + LD +V R + + G +
Sbjct: 136 ---RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALV 192
Query: 1024 TIH 1026
T H
Sbjct: 193 TTH 195
|
Length = 214 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 45/158 (28%), Positives = 73/158 (46%), Gaps = 27/158 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQND 911
G TA++G +G GK+TL+ L+ T G +++ G + + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 912 IHSPGLTVLESL---------LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
+TV E + LF+ W + E + A V + M+ +T L+
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK-------EDEEA-VTKAMQATGITHLADQ--- 139
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 140 --SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 5e-07
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +T+ H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1028 PSIDIFESFDELLFMKRGGELIYAG 1052
+ E DE++ M + G+++ G
Sbjct: 236 ME-HVLEVADEVIVMDK-GKILKTG 258
|
Length = 320 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 6e-07
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L + G R T+LDDLS I + +LGP +GK+TLL LAG L SG+
Sbjct: 2 VENLSVGYGGR---TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGE 55
Query: 195 ITYNGH-----GFKEFVPPRTSAYVSQ 216
I +G KE R AYV Q
Sbjct: 56 ILLDGKDLASLSPKELA--RKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 6e-07
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340
V +++LGL AD + +SGG+++R+ L +L +DE ++ LD +
Sbjct: 77 YVPQALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131
Query: 341 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
++++ L+ R T V+ L A D VILL +G+IV QG
Sbjct: 132 HQIELLELLRRLARERGKTVVMVLHDLNL-AARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 6e-07
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
V + + G+SGGQ++R+ L VL +DE ++ LD T ++ LK S +A G
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK-SLQAQLG 151
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQ 385
TV+ + EA L D V++L +G+
Sbjct: 152 ITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 69/278 (24%), Positives = 107/278 (38%), Gaps = 66/278 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
+++L+ I +L+GP SGKTT + + RL SG+I +G +E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTM-KMINRLIEP--TSGEIFIDGEDIREQDPVEL 73
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R YV QQ MTV E + + + RE+ DE
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKE-------KIRERA-----DE----- 116
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR- 326
++ ++GLD D +SGGQ++R VG AR
Sbjct: 117 -----------------LLALVGLD---PAEFADRYPHELSGGQQQR-------VGVARA 149
Query: 327 ------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
+L MDE LD T Q+ + K + L G T++ + EA+ L D + +
Sbjct: 150 LAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQEL-GKTIVFVTHDIDEAFRLADRIAI 208
Query: 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418
+ G+IV G + + S P VA+F+
Sbjct: 209 MKNGEIVQVG---TPDEILRS-----PANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 53/192 (27%), Positives = 83/192 (43%), Gaps = 14/192 (7%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL-----AGRKTGGIIEGDIYISGYPKRQ 897
Q L ++T G L+G SGAGK++L+ VL T I S P +
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 898 ETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
R G Q P LTV E+L+ + L + RA E++++ + L
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA--EKLLKRLRLKP 133
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+ P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ ++ +
Sbjct: 134 YADRY---P--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELA 188
Query: 1016 NTGRTIVCTIHQ 1027
TG T V H+
Sbjct: 189 ETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 7e-07
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 47/244 (19%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD++S IR ++G SGK+TLL LAG SG + +G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY---KPTSGSVLLDGTDIRQ-LDPAD 75
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
R YV Q T+R+ + G D + R ++AG +
Sbjct: 76 LRRNIGYVPQDVTLFYG-TLRDNITL-----GAPLADD--ERILRAAELAG------VTD 121
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
F+ G D +G E +G+SGGQ++ + L+
Sbjct: 122 FVNKHPNG--------------------LDLQIG-ERGRGLSGGQRQAVALARALLNDPP 160
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE ++ +D ++ ++ + L+ D T +I +P+ +L D +I++ G+I
Sbjct: 161 ILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPS--LLDLVDRIIVMDSGRI 216
Query: 387 VYQG 390
V G
Sbjct: 217 VADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 7e-07
Identities = 47/200 (23%), Positives = 73/200 (36%), Gaps = 60/200 (30%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G +T L+D+S + L+GP GK+TLL +AG SG++ +G
Sbjct: 10 YGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGE 66
Query: 201 GFKEFVPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
P YV QQD W +TV + + + QGV RE+
Sbjct: 67 PVTG--PGPDRGYVFQQDALLPW----LTVLDNVALGLELQGVPKA-------EARER-- 111
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL- 315
E +++++GL + +SGG ++R+
Sbjct: 112 -------------------------AEELLELVGLSGFE-----NAYPHQLSGGMRQRVA 141
Query: 316 ---TTGELLVGPARVLFMDE 332
L V P VL +DE
Sbjct: 142 LARA---LAVDP-DVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 61/253 (24%), Positives = 101/253 (39%), Gaps = 43/253 (16%)
Query: 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY--NGHGFKEF--VPP 208
D+S + P + ++G SGK+TLL LAGRL G TY E +
Sbjct: 21 DVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL---APDHGTATYIMRSGAELELYQLSE 77
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ + +W R+ L R AG E L
Sbjct: 78 AERRRLMRTEWGFVHQNPRDGL--------------------RMRVSAGANIGERL---- 113
Query: 269 KSFALG----GQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
A+G G + +++ ++ + + D++ + SGG ++RL LV
Sbjct: 114 --MAIGARHYGNIRATAQDWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIARNLVTR 166
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
R++FMDE + GLD S +++ L+ R L G VI + A L ++++ +G
Sbjct: 167 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRDL-GLAVIIVTHDLGVARLLAQRLLVMQQG 225
Query: 385 QIVYQGPRVSVLD 397
++V G VLD
Sbjct: 226 RVVESGLTDQVLD 238
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 7e-07
Identities = 58/227 (25%), Positives = 89/227 (39%), Gaps = 57/227 (25%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----- 884
+E++ D +L NV +TAL+G SG GK+T + L + +I
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL--NRMNDLIPGFRH 61
Query: 885 EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI---- 935
EG IY+ G DI+ P + V+E ++F P I
Sbjct: 62 EGHIYLDG-----------------VDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNV 104
Query: 936 ------ELETQRAFVEEVMELVELTSLSGALIG-------LPGINGLSTEQRKRLTIAVE 982
E F+EE +E SL A + GLS Q++RL IA
Sbjct: 105 AYGLRIHGEDDEDFIEERVE----ESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIART 160
Query: 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR---TIVCTIH 1026
+ +P ++ MDEP S LD I + ++++ + TIV H
Sbjct: 161 IAVSPEVILMDEPCSALD----PISTTKIEDLIHKLKEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 8e-07
Identities = 57/207 (27%), Positives = 87/207 (42%), Gaps = 19/207 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 901
L N+ + G ++G +G+GK+TL L G + G ++ I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 902 RISGYCEQN-DIHSPGLTVLESLLFSAW-LRLP-SEIELETQRAFVEEVMELVELTSLSG 958
++ G QN + G TV E L F L LP EI RA E +E S
Sbjct: 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRS--- 133
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P LS Q + + +A L P + DE TS LD + V+ ++ + G
Sbjct: 134 -----P--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKG 186
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
+TIV H +++ D ++ M RG
Sbjct: 187 KTIVYITH--NLEELHDADRIIVMDRG 211
|
Length = 274 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-07
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 33/212 (15%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------YPKRQETF 900
G AL+G SG+GK+T++ +L + I EG I + G P ++
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 901 ARIS---GYCEQNDIHSPGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELT 954
++ G Q+ P TVL+++ + L L +E E +RA MEL+++
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAE---KRA-----MELLDMV 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L+ +P LS Q++R+ IA L P ++ DE TS LD V+ +R +
Sbjct: 135 GLADKADHMPA--QLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 1015 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ T++ H+ E D + F +G
Sbjct: 193 ASEHDLTMLLVTHEMGF-AREFADRVCFFDKG 223
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 9e-07
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 35/205 (17%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV---LAGRKTGGIIEGDIYISGYP----- 894
++L V +TAL+G SG+GK+TL+ V L + G++Y+ G
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD 76
Query: 895 -----KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL-RL-PSEIELETQRAFVEEV 947
+R + +I N I P L++ E++ L RL S+ EL+ + V
Sbjct: 77 VIELRRRVQMVFQIP-----NPI--PNLSIFENVALGLKLNRLVKSKKELQER---VRWA 126
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 1003
+E +L + P LS Q++RL IA L P ++ DEPT+ LD A+
Sbjct: 127 LEKAQLWDEVKDRLDAPA-GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKI 185
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQP 1028
++ + +++ TIV H P
Sbjct: 186 ESLFLELKKDM-----TIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 1e-06
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K T LDD+S + + LLGP +GKTTL+ + G L SG+I G K+
Sbjct: 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP 68
Query: 207 P--PRTSAYVSQQDWQVAEMTVRETLDF 232
R Y+ ++ +TVRE L
Sbjct: 69 EEVKRRIGYLPEEPSLYENLTVRENLKL 96
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 1e-06
Identities = 62/249 (24%), Positives = 95/249 (38%), Gaps = 45/249 (18%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---G 201
K +L D+S I P ++GP SGK+TL+ L SG+I +G
Sbjct: 339 PGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRD 395
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
+ VSQ + T+RE + G E+ K+A
Sbjct: 396 ISLDSLRKRIGIVSQDPLLFSG-TIRENIAL-------GRPDATDEEIEEALKLANAH-- 445
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E+I L DT+VG E +SGGQ++RL L
Sbjct: 446 ---------------------EFIAN---LPDGYDTIVG-ERGVNLSGGQRQRLAIARAL 480
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ +L +DE ++ LD+ T I LK + L G T + + + D +I+L
Sbjct: 481 LRNPPILILDEATSALDTETEALIQDALK---KLLKGRTTLIIAH-RLSTIKNADRIIVL 536
Query: 382 SEGQIVYQG 390
G+IV +G
Sbjct: 537 DNGRIVERG 545
|
Length = 567 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 47/244 (19%)
Query: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ 216
+ + +LGP +GK+TLL +AG SG+I NG P R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
++ A +TV + + G+ P L+ A +
Sbjct: 79 ENNLFAHLTVAQNIGL------------------------GLSPGLKLN------AEQRE 108
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
K VE +GL L G+ +SGGQ++R+ LV +L +DE +
Sbjct: 109 K----VEAAAAQVGLAGFLKRLPGE-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
LD + +++ + T ++ P +A + D V+ L G+I QG
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS---TQ 215
Query: 397 DFFA 400
+ +
Sbjct: 216 ELLS 219
|
Length = 231 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 1e-06
Identities = 61/261 (23%), Positives = 102/261 (39%), Gaps = 63/261 (24%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T+LD + +R L L+GP +GKTTLL A+ G L +G + G + V
Sbjct: 17 TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAG----DDVEA 69
Query: 209 RTSAYVSQQDWQVAEMTVRETL--DFAGQCQGVGSKYDMITELAR---REKIAGIKPDED 263
++ S++ VA + +L +F + + E+ R R + +
Sbjct: 70 LSARAASRR---VASVPQDTSLSFEFDVR---------QVVEMGRTPHRSRFDTWTETDR 117
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
VE M+ G+ AD V +SGG+++R+ L
Sbjct: 118 A----------------AVERAMERTGVAQFADRPVTS-----LSGGERQRVLLARALAQ 156
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--------DGTTVISLLQPAPEAYELF 375
VL +DE + LD + H R L DG T ++ + A
Sbjct: 157 ATPVLLLDEPTASLD----------INHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYC 206
Query: 376 DDVILLSEGQIVYQGPRVSVL 396
D+++LL++G++ GP VL
Sbjct: 207 DELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 1e-06
Identities = 62/262 (23%), Positives = 94/262 (35%), Gaps = 74/262 (28%)
Query: 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RT 210
LS +R + L+GP +GK+TLL +AG L SG I + G + + R
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQPLEAWSAAELARH 70
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKS 270
AY+SQQ M V + L + +
Sbjct: 71 RAYLSQQQTPPFAMPVFQYLTLHQP--------------------DKTRTEAVAS----- 105
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVGP---- 324
+ + + LGLD D L + +SGG Q+ RL L V P
Sbjct: 106 ----------ALNEVAEALGLD---DKL--GRSVNQLSGGEWQRVRLAAVVLQVWPDINP 150
Query: 325 -ARVLFMDEISNGLD---SSTTYQIIKYLKHSTRALDGTTVIS------LLQPAPEAYEL 374
++L +DE N LD + +++ L V+S L+ A
Sbjct: 151 AGQLLLLDEPMNSLDVAQQAALDRLLSELC----QQGIAVVMSSHDLNHTLRHA------ 200
Query: 375 FDDVILLSEGQIVYQGPRVSVL 396
D V LL +G+++ G R VL
Sbjct: 201 -DRVWLLKQGKLLASGRRDEVL 221
|
Length = 248 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 35/122 (28%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQK+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITH 199
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
+ D V ++S G+++ QG +V + F+ PK F++ E
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH-----PKTPLAQKFIRSTLHLSIPE 251
Query: 427 QY 428
Y
Sbjct: 252 DY 253
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 58/243 (23%), Positives = 91/243 (37%), Gaps = 56/243 (23%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH-----GFKEFVPP--RTSAY 213
+T L GP SGKT+L+ +AG G+I NG F+PP R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLT--RPDE-GRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 214 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 273
V Q TVR L + G + + +++D + L GI+
Sbjct: 81 VFQDARLFPHYTVRGNLRY-GMWKSMRAQFDQLVALL------GIEH------------- 120
Query: 274 GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEI 333
L+ Y + SGG+K+R+ G L+ +L MDE
Sbjct: 121 ------LLDRYPGTL-------------------SGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 334 SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 393
LD +I+ YL+ ++ ++ + E L D V++L G++ GP
Sbjct: 156 LASLDLPRKREILPYLERLRDEIN-IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLE 214
Query: 394 SVL 396
V
Sbjct: 215 EVW 217
|
Length = 352 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 54/194 (27%), Positives = 74/194 (38%), Gaps = 45/194 (23%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R++ + L + L+ G +GKTTLL LAG L H++ SG+I +G
Sbjct: 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL--HVE-SGQIQIDGKTATR 77
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
R AY+ A+++ E L F G RR K
Sbjct: 78 GDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG------------RRAKQ--------- 116
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
M AL I+GL DTLV + +S GQKKRL L + P
Sbjct: 117 ---MPGSALA-------------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSP 155
Query: 325 ARVLFMDEISNGLD 338
A + +DE LD
Sbjct: 156 APLWLLDEPYANLD 169
|
Length = 214 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 55/191 (28%), Positives = 90/191 (47%), Gaps = 38/191 (19%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-----IEGDIYISG---YPKR 896
L +V+ F P +TAL+G SG+GK+TL+ + + + I G I +G Y R
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSI--NRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 897 QET--FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
+T + G Q P +++ E++++ LRL + + ++E +E
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKD----KQVLDEAVE----K 127
Query: 955 SLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
SL GA I L GLS Q++R+ IA L +P I+ +DEPTS LD +
Sbjct: 128 SLKGASIWDEVKDRLHDSAL----GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPIS 183
Query: 1004 AAIVMRTVRNI 1014
A + T+ +
Sbjct: 184 AGKIEETLLGL 194
|
Length = 252 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 51/196 (26%), Positives = 76/196 (38%), Gaps = 62/196 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
L ++T + +TAL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNG--- 72
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI----------ELETQ 940
+I G V+ ++F P I E
Sbjct: 73 --------------ENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN 118
Query: 941 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 989
+ ++ ++E SL GA + L LS Q++RL IA L NP +
Sbjct: 119 KKTLDTIVE----KSLKGAALWDEVKDRLHDSAL----SLSGGQQQRLCIARTLAVNPEV 170
Query: 990 VFMDEPTSGLDARAAA 1005
+ MDEP S LD A A
Sbjct: 171 ILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 1e-06
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 44/218 (20%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY-------PKRQETFARIS 904
G + ++G+SG+GK+T + +L +IE G I+I G + +E +
Sbjct: 19 GEIFVIMGLSGSGKSTTVRML-----NRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
G Q P +T+L++ L P + +R E+ +EL++L L
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQ-----ERK--EKALELLKLVGLEEYEHRY 126
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT------VRNIVNT 1017
P + LS ++R+ +A L A P I+ MDE S LD ++R +
Sbjct: 127 P--DELSGGMQQRVGLARALAAEPDILLMDEAFSALDP-----LIRDSMQDELKKLQATL 179
Query: 1018 GRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
+TIV H D+ E+ D ++ MK GE++ G
Sbjct: 180 QKTIVFITH----DLDEAIRIGDRIVIMK-AGEIVQVG 212
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 2e-06
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV-SGKITYNGHGFKEFVP- 207
+L D+S I+P ++GP SGK+TLL L SG+I +G ++
Sbjct: 17 VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLR----LYDPTSGEILIDGVDLRDLDLE 72
Query: 208 --PRTSAYVSQQDWQVAEMTVRE 228
+ AYV Q + + T+RE
Sbjct: 73 SLRKNIAYVPQDPF-LFSGTIRE 94
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 48/198 (24%), Positives = 84/198 (42%), Gaps = 45/198 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-- 207
IL ++ ++ + ++GP SGK+TL +AG + + SG I + G E P
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-TSGTILFKGQDLLELEPDE 73
Query: 208 -PRTSAYVS-QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R +++ Q ++ ++ E L A ARR A + DL
Sbjct: 74 RARAGLFLAFQYPEEIPGVSNLEFLRSALN--------------ARRS--ARGEEPLDLL 117
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-----GISGGQKKRLTTGEL 320
F+K +++ + +LG+D +E L G SGG+KKR ++
Sbjct: 118 DFLK-----------LLKAKLALLGMD--------EEFLNRSVNEGFSGGEKKRNEILQM 158
Query: 321 LVGPARVLFMDEISNGLD 338
+ ++ +DEI +GLD
Sbjct: 159 ALLEPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-06
Identities = 64/258 (24%), Positives = 93/258 (36%), Gaps = 58/258 (22%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVS-GKITYNGHGFKEFVPP--RTSAYVSQQDWQVA 222
LLGP GKTTLL LAG Q G I +G VPP R V Q
Sbjct: 1 LLGPSGCGKTTLLRLLAG----FEQPDSGSIMLDGEDVTN-VPPHLRHINMVFQSYALFP 55
Query: 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVV 282
MTV E + F + + V R +I
Sbjct: 56 HMTVEENVAFGLKMRKVP-----------RAEIK-------------------------- 78
Query: 283 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
+++ L L + D +SGGQ++R+ LV ++L +DE + LD
Sbjct: 79 PRVLEALRLVQLEE--FADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLR 136
Query: 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG-PRVSVLDFFAS 401
Q+ LK L G T + + EA + D + ++ +G+I G P
Sbjct: 137 DQMQLELKTIQEQL-GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEI------- 188
Query: 402 MGFSCPKRKNVADFLQEV 419
+ P VA F+ E+
Sbjct: 189 --YEEPANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 27/220 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
Q + +V+ +PG A+VG +GAGK+TL+++L ++ G I I G R T A
Sbjct: 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLL--QRVFDPQSGRILIDGTDIRTVTRAS 406
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE--------LT 954
+ + + ++ LF+ + I + A EE+ E
Sbjct: 407 LR--------RNIAVVFQDAGLFNRSIE--DNIRVGRPDATDEEMRAAAERAQAHDFIER 456
Query: 955 SLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
G ++G G LS +R+RL IA L+ +P I+ +DE TS LD A V +
Sbjct: 457 KPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ GRT H+ S + D +L G ++ +G
Sbjct: 516 E-LMKGRTTFIIAHRLS--TVRNADRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 64/192 (33%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L + +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDG--- 69
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE-----------LET 939
DI+ + V + ++F P I ++
Sbjct: 70 --------------QDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD 115
Query: 940 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 988
++ ++ E+VE SL GA + L GLS Q++RL IA L P
Sbjct: 116 KK----KLDEIVE-KSLKGAALWDEVKDRLKKSAL----GLSGGQQQRLCIARALAVEPE 166
Query: 989 IVFMDEPTSGLD 1000
++ MDEPTS LD
Sbjct: 167 VLLMDEPTSALD 178
|
Length = 250 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 3e-06
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+ L E LK +SGG K+RL + L+ +L +DE ++GLD + + + L+ +
Sbjct: 86 ENLTVRENLK-LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK- 143
Query: 356 LDGTTVI---SLLQPAPEAYELFDDVILLSEGQI 386
+G T++ +L+ EA L D V +L+ G+I
Sbjct: 144 -EGKTILLSSHILE---EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 3e-06
Identities = 69/237 (29%), Positives = 102/237 (43%), Gaps = 34/237 (14%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + AL+G SG GK+TL+ +LAG + G I+ + +S P Q R Q+
Sbjct: 45 GEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPINMMFQSY 100
Query: 912 IHSPGLTVLESLLFS-AWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGL 969
P +TV +++ F +LP +EI R V E++ LV + + + L
Sbjct: 101 ALFPHMTVEQNIAFGLKQDKLPKAEI---ASR--VNEMLGLVHMQEFAKR-----KPHQL 150
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQP 1028
S QR+R+ +A L P ++ +DEP LD + + V +I+ G T V H
Sbjct: 151 SGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTH-- 208
Query: 1029 SIDIFESFD---ELLFMKRGG-------ELIYAGPLGSKSCELIKYFEAVEGVPKIR 1075
D E+ + M RG E IY P S E I EGV K R
Sbjct: 209 --DQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKER 263
|
Length = 377 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 56/218 (25%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L ++G R G + LVG +GAGK+TL+ +AG +G G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Y Q +P W L +T+ + +V + L G
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRS- 122
Query: 962 GLPGINGLSTE--QRKRLT---IAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNI 1014
N LS QR RL + + ANP+ ++ +DEP + LD + + R + +
Sbjct: 123 ----TNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL 178
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G IV + H + +KR G+L+ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 29/171 (16%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK----TGGIIEGDIYISG---YPKRQET 899
+V P +TA +G SG GK+T++ L R G +EG++ + G Y +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTL-NRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80
Query: 900 FA--RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
A R G Q P +++ ++++ A L+L + ++E++E SL
Sbjct: 81 VAVRRTIGMVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLR 130
Query: 958 GA--------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GA + PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 131 GANLWNEVKDRLDKPGG-GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-06
Identities = 47/191 (24%), Positives = 90/191 (47%), Gaps = 26/191 (13%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI--S 904
+V+ + R G + + G+ GAG+T L+ L G G EG+++I+G P A+ +
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRA 336
Query: 905 GYC------EQNDI-------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
G +++ I + L+VL+S F +R+ + EL+ + ++ +
Sbjct: 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKS--FCFKMRIDAAAELQIIGSAIQRL---- 390
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
+ A LP I LS +++ +A L+ NP ++ +DEPT G+D A + + +
Sbjct: 391 ---KVKTASPFLP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLI 446
Query: 1012 RNIVNTGRTIV 1022
+ G I+
Sbjct: 447 NQLAQEGVAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 4e-06
Identities = 63/252 (25%), Positives = 107/252 (42%), Gaps = 51/252 (20%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHG 201
NR + +L L+ + P + L+GP SGK+T+ L +L G++ +G
Sbjct: 490 NRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALL-----QNLYQPTGGQVLLDGVP 544
Query: 202 FKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA-GIKP 260
++ Y+ +Q V + E + F+G + RE IA G+
Sbjct: 545 LVQY----DHHYLHRQVALVGQ----EPVLFSG---------------SVRENIAYGLTD 581
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKKRLTTG 318
D +I + K + ++IM DT VG+ KG +SGGQK+R+
Sbjct: 582 TPDEEI------MAAAKAANAHDFIM---EFPNGYDTEVGE---KGSQLSGGQKQRIAIA 629
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
LV RVL +DE ++ LD+ + L +R+ TV+ + E D +
Sbjct: 630 RALVRKPRVLILDEATSALDAE-----CEQLLQESRSRASRTVLLIAHRLSTV-ERADQI 683
Query: 379 ILLSEGQIVYQG 390
++L +G +V G
Sbjct: 684 LVLKKGSVVEMG 695
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-06
Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR 896
R Q+L +++ G + AL+G SG+GKTTL+ ++AG + +G I +S R
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR 72
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G+ Q+ +TV +++ F L + E A +V +L+E+ L
Sbjct: 73 D----RKVGFVFQHYALFRHMTVFDNIAFG--LTVLPRRERPNAAAIKAKVTQLLEMVQL 126
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
+ P LS Q++R+ +A L P I+ +DEP LDA+ + R +R +
Sbjct: 127 AHLADRYPA--QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQL 182
|
Length = 353 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L+D++ I +++T L+GP GK+T L L L ++++ G++ +G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ +D V E+ R + F S YD + A +I GIK ++LD
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNV---AYGPRIHGIKDKKELD--- 121
Query: 269 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+VE+ +K L D D L + +SGGQ++RL + V
Sbjct: 122 -----------KIVEWALKKAALWDEVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDV 168
Query: 328 LFMDEISNGLDSSTTYQI 345
+ MDE ++ LD +T +I
Sbjct: 169 ILMDEPTSALDPISTLKI 186
|
Length = 251 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 4e-06
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 19/228 (8%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 894
R +L NV+ + G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
K++ F R Q+ + P +TV + + LR + ++ Q+A + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L S LP LS Q +R+ IA L P ++ +DE S LD A+++ +R
Sbjct: 139 LR--SEDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAGPLGSKSC 1059
+ T I + + +SF + M G+++ +
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMD-KGQIVEECDVAQLLS 240
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 4e-06
Identities = 43/147 (29%), Positives = 55/147 (37%), Gaps = 51/147 (34%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARISGYCEQNDIHSP 915
LVG SG GK+TL GR G+ E G+I G DI
Sbjct: 43 GLVGESGCGKSTL-----GRLILGLEEPTSGEILFEG-----------------KDIT-- 78
Query: 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG-LPGINGLSTEQR 974
+L E E V+EL+E L + P + LS QR
Sbjct: 79 --------------KLSKEERRE-------RVLELLEKVGLPEEFLYRYP--HELSGGQR 115
Query: 975 KRLTIAVELVANPSIVFMDEPTSGLDA 1001
+R+ IA L NP ++ DEP S LD
Sbjct: 116 QRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
V L+ V + ++L +V+ +PG + L+G +GAGK+TL+ V+ G++ D
Sbjct: 5 VSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVL-----GLVAPD-- 57
Query: 890 ISGYPKRQETFARISGYCEQN---DIHSPGLTVLESLLFSAWLRL-PSEIELETQRAFVE 945
G KR RI GY Q D P LTV + +LRL P T++ +
Sbjct: 58 -EGVIKRNGKL-RI-GYVPQKLYLDTTLP-LTV------NRFLRLRPG-----TKKEDIL 102
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ V+ +G LI P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 103 PALKRVQ----AGHLIDAP-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 5e-06
Identities = 51/207 (24%), Positives = 79/207 (38%), Gaps = 60/207 (28%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+L DLS I ++GP +GK+TLL LAG LG SG + G K
Sbjct: 334 GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKV-GETVK--- 386
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
Y Q R+ LD + + ++E PD D +
Sbjct: 387 ----IGYFDQH---------RDELD------PDKTVLEELSEGF---------PDGD-EQ 417
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI---SGGQKKRLTTGELLVG 323
++++ LG G G++ K + SGG+K RL +LL+
Sbjct: 418 EVRAY-LGR-------------FGFT-------GEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLK 350
P +L +DE +N LD + + + L
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALL 483
|
Length = 530 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 5e-06
Identities = 60/228 (26%), Positives = 95/228 (41%), Gaps = 53/228 (23%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRL 185
MTE +L L +Y K L+ +S P+ +T L+GP SGK+TLL ++ L
Sbjct: 1 MTEPILQVSDLSVYYN---KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL 57
Query: 186 GHHLQVSGKITYNGHGFKEFVPPRTS--------AYVSQQDWQVAEMTVRETLDFAGQCQ 237
+ ++G I YNGH PRT V QQ M++ E + +
Sbjct: 58 NPEVTITGSIVYNGH---NIYSPRTDTVDLRKEIGMVFQQP-NPFPMSIYENVVYG---- 109
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
++ GIK + LD ++ SL I D D
Sbjct: 110 ---------------LRLKGIKDKQVLDEAVEK--------SLKGASIW-----DEVKDR 141
Query: 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
L D L G+SGGQ++R+ +L +++ +DE ++ LD + +I
Sbjct: 142 L-HDSAL-GLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKI 187
|
Length = 252 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 5e-06
Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 57/251 (22%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
S L L +++ I +LT+++G GK++LLLA+ LG + GK+ ++ E
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAI---LGEMQTLEGKVHWSNKNESEP 68
Query: 206 VPPRTS-------AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
T AY +Q+ W + TV E + F +Y +T+ +
Sbjct: 69 SFEATRSRNRYSVAYAAQKPW-LLNATVEENITFGSPFN--KQRYKAVTD------ACSL 119
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+PD DL G Q T +G+ + +SGGQ++R+
Sbjct: 120 QPDIDL------LPFGDQ--------------------TEIGERGIN-LSGGQRQRICVA 152
Query: 319 ELLVGPARVLFMDEISNGLD---SSTTYQ--IIKYLKHSTRALDGTTVISLLQPAPEAYE 373
L ++F+D+ + LD S Q I+K+L+ R L V LQ P A
Sbjct: 153 RALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTL--VLVTHKLQYLPHA-- 208
Query: 374 LFDDVILLSEG 384
D +I + +G
Sbjct: 209 --DWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 61/198 (30%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +V +TA +G SG GK+T + D + G + + G I + G
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR----VTGKITLDG--- 85
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEI-----------ELET 939
DI+ P L V+E ++F P I L
Sbjct: 86 --------------EDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLAR 131
Query: 940 QRAFVEEVMELVELTSLSGALIGL----------PGINGLSTEQRKRLTIAVELVANPSI 989
+A ++E++E TSL A GL PG GLS Q++RL IA + +P +
Sbjct: 132 SKAELDEIVE----TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCIARAIAVSPEV 184
Query: 990 VFMDEPTSGLDARAAAIV 1007
+ MDEP S LD A A V
Sbjct: 185 ILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-06
Identities = 59/277 (21%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 766 VVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYF 825
++ L R R E +E + + KG+ FQ + +FG
Sbjct: 336 PMAYPHLLLAPRYRMVEK--LEGPIKFKNVTKTFASELDIKGLPNEFQDILESFGVRQRV 393
Query: 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
+ E + L L + PG + A+VG SGAGKTTL+ ++ G
Sbjct: 394 I--------ERYVLRNLNLEIK------PGDVVAVVGQSGAGKTTLLRMILG-------- 431
Query: 886 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELE-TQRAFV 944
+ G + + P +E + +P E E E + +
Sbjct: 432 --------------AQKGRG----EEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTIL 473
Query: 945 EEV----------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
E + +E++ LS A++ + LST Q++R +A L P+++ +DE
Sbjct: 474 EHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDE 533
Query: 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSI 1030
+ LD A V R + + G T++ H+P +
Sbjct: 534 FAAHLDELTAVRVARKISELAREAGITLIVVTHRPEV 570
|
Length = 593 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 5e-06
Identities = 54/238 (22%), Positives = 98/238 (41%), Gaps = 28/238 (11%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTG 881
V+L+Q V + + +V+ F +TA++G SG GK+T++ + + R TG
Sbjct: 5 VKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG 64
Query: 882 GII--EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
I+ + DIY G + R G Q P +++ ++++ A +L +
Sbjct: 65 KILLDDTDIYDRGVDP--VSIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSE 120
Query: 940 QRAFVEEVMELVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994
VE ++ V L L + L G Q++RL IA + P ++ MDE
Sbjct: 121 ADEIVESSLKRVALWDEVKDRLKSNAMELSG------GQQQRLCIARTIAVKPEVILMDE 174
Query: 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
P S LD + + + + I+ T + + +M G+L+ G
Sbjct: 175 PASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYM---GDLVECG 229
|
Length = 252 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 5e-06
Identities = 59/218 (27%), Positives = 94/218 (43%), Gaps = 41/218 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFA 901
L +V+ + G +++G +G+GK+T + R G++E G I I G +E
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTV-----RLIDGLLEAESGQIIIDGDLLTEENVW 77
Query: 902 RIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELV----- 951
I G QN D G TV + + F L ++ I E + V E +ELV
Sbjct: 78 DIRHKIGMVFQNPDNQFVGATVEDDVAFG----LENKGIPHEEMKERVNEALELVGMQDF 133
Query: 952 ---ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
E LSG Q++R+ IA + P I+ +DE TS LD ++
Sbjct: 134 KEREPARLSGG-------------QKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180
Query: 1009 RTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+T++ I + T++ H +D D +L MK G
Sbjct: 181 KTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 5e-06
Identities = 57/219 (26%), Positives = 94/219 (42%), Gaps = 41/219 (18%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L +V +PG + G +G+GK++L LA + I +G I I G
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLS--LAFFRMVDIFDGKIVIDGI---------- 83
Query: 904 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
DI L L S +LFS +R + E + + E +E+ +L
Sbjct: 84 -------DISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLK 136
Query: 955 SLSGALIGLPGINGLSTE--------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
++ +L G G++ + TE QR+ +A V SI+ MDE T+ +D I
Sbjct: 137 NMVKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENI 194
Query: 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + V RT+V H+ S I ++ D +L + RG
Sbjct: 195 LQKVVMTAF-ADRTVVTIAHRVS-TILDA-DLVLVLSRG 230
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 6e-06
Identities = 57/247 (23%), Positives = 92/247 (37%), Gaps = 43/247 (17%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
+ L + + + +LG SGK+TLL LAG G IT NG
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW---DPQQGSITLNGVEIASL 405
Query: 206 VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R + V Q + T+R+ L A A E++
Sbjct: 406 DEQALRETISVLTQRVHLFSGTLRDNLRLANPD-------------ASDEELWAALQQVG 452
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
L+ ++S A G T L E + +SGG+++RL L+
Sbjct: 453 LEKLLES-APDGLNTWL--------------------GEGGRRLSGGERRRLALARALLH 491
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
A + +DE + GLD T Q++ L +G T++ + E D +I+L
Sbjct: 492 DAPLWLLDEPTEGLDPITERQVLALLFEH---AEGKTLLMVTHRLRGL-ERMDRIIVLDN 547
Query: 384 GQIVYQG 390
G+I+ +G
Sbjct: 548 GKIIEEG 554
|
Length = 573 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 6e-06
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 64/197 (32%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +++ F +TAL+G SG GK+T + D++ G + +EG+I + G
Sbjct: 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR----VEGEILLDG--- 72
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------- 939
+I+ P + V+E ++F P I E
Sbjct: 73 --------------ENIYDPHVDVVELRRRVGMVFQKPNPFPKSI-FENVAYGLRVNGVK 117
Query: 940 QRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPS 988
+A++ E +E SL A + L GLS Q++RL IA L P
Sbjct: 118 DKAYLAERVE----RSLRHAALWDEVKDRLHESAL----GLSGGQQQRLCIARALAVEPE 169
Query: 989 IVFMDEPTSGLDARAAA 1005
++ MDEP S LD A
Sbjct: 170 VLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 6e-06
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 26/205 (12%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+E K+ ++L +++ F G + +VG SGAGK+TL+ ++ + EG I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGSIL 61
Query: 890 ISGYPKRQ----ETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRA 942
I G + + +I +Q P L TV +++ + L+ ++
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQ-----PHLFEGTVKDNIEYGPMLKGEKNVD------ 110
Query: 943 FVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
VE + +V L + LS + +R++IA L NP ++ +DEPTS LD
Sbjct: 111 -VEYYLSIVGLNKE----YATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPT 165
Query: 1003 AAAIVMRTVRNIVNT-GRTIVCTIH 1026
+ I+ + + N T++ H
Sbjct: 166 STEIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 7e-06
Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 44/250 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-- 208
LD +S +I P L+G SGK+TL+ L R SG+I +GH ++
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEP--DSGQILLDGHDLADYTLASL 404
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R A VSQ + +T+ G + D A E+ +
Sbjct: 405 RRQVALVSQD-----VVLFNDTI-ANNIAYGRTEQADR----AEIERALA-------AAY 447
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ F + L DT +G+ + +SGGQ++RL L+ A +
Sbjct: 448 AQDF----------------VDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPI 490
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
L +DE ++ LD+ + + L+ + + L +A D ++++ +G+IV
Sbjct: 491 LILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKA----DRIVVMDDGRIV 546
Query: 388 YQGPRVSVLD 397
+G +L
Sbjct: 547 ERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 7e-06
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 32/157 (20%)
Query: 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-- 914
LT L+G SG GKTT++ ++AG +T G I + G + + E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFET--PDSGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 915 ------PGLTVLESLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
P +TV E++ F LR+ P+ E+ + V E + +V+L +
Sbjct: 93 QSYALFPHMTVFENVAFG--LRMQKTPAA-EITPR---VMEALRMVQLEEFAQR-----K 141
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 142 PHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 22/215 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
L L N+ G LT +VG G GK++L+ + G +EG ++ S + + +F
Sbjct: 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ--TLEGKVHWSNKNESEPSFE 71
Query: 902 RISG---YCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
Y P L TV E++ F S + +A + ++
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFG------SPFNKQRYKAVTDACSLQPDIDL 125
Query: 956 L---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT-- 1010
L IG GIN LS QR+R+ +A L N +IVF+D+P S LD + +M+
Sbjct: 126 LPFGDQTEIGERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGI 184
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
++ + + RT+V H+ + D ++ MK G
Sbjct: 185 LKFLQDDKRTLVLVTHK--LQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 8e-06
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISG-- 892
L ++ + A +G SG GK+T + D++ + +EG+I I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 893 -YPK--RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
Y K + + + G Q P ++ E++ + LR+ + R VEE ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 950 LVEL-----TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
L L + L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 129 GAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182
Query: 1005 AIVMRTVRNIVNTGRTIVCTIH 1026
A V + + TIV H
Sbjct: 183 AKVEELIHELKKD-YTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 8e-06
Identities = 46/188 (24%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL ++ G L L G +GAGKTTL+ ++AG +G+I +++
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 904 SGYC---EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
C ++ I +P LT+ E+ L+ ++ V + EL L SL L
Sbjct: 74 KQLCFVGHRSGI-NPYLTLRENCLY----------DIHFSPGAV-GITELCRLFSL-EHL 120
Query: 961 IGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
I P G+ LS+ Q++++ + ++ + +DEP LD + ++ ++ G
Sbjct: 121 IDYPCGL--LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGG 178
Query: 1020 TIVCTIHQ 1027
++ T HQ
Sbjct: 179 AVLLTSHQ 186
|
Length = 200 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 8e-06
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 16/168 (9%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP------ 894
+L NV+ + + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 895 KRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+++ F R Q+ I + P TV E + LR ++ + A E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L L P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDD--SVLDKRPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 9e-06
Identities = 61/277 (22%), Positives = 104/277 (37%), Gaps = 54/277 (19%)
Query: 130 MTEALL--RQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
M LL L + + + ++ + D+S + P + ++G SGK+TL LAL G L
Sbjct: 1 MMSPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP 60
Query: 187 HHLQV-SGKITYNG--------HGFKEFVPPRTSAYVSQQDWQVAE--MTVRETLDFAGQ 235
++ SG++ +G ++ R A + Q MT+ + + A +
Sbjct: 61 EGGRITSGEVILDGRDLLGLSEREMRKLRGKRI-AMIFQDPMTSLNPVMTIGDQIREALR 119
Query: 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295
G GS+ + + G+ E D L G
Sbjct: 120 LHGKGSRAEARKRAVELLEQVGLPDPERRD--RYPHQLSG-------------------- 157
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
G ++R+ L ++L DE + LD +T QI+ LK R
Sbjct: 158 --------------GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE 203
Query: 356 LDGTTVISLLQPAPE-AYELFDDVILLSEGQIVYQGP 391
L G V+ + EL D V+++ +G+IV GP
Sbjct: 204 L-GMAVL-FITHDLGVVAELADRVVVMYKGEIVETGP 238
|
Length = 539 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 67/233 (28%), Positives = 101/233 (43%), Gaps = 35/233 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L NV RP + AL+G +GAGK+TL+ L G +K G I G +E +
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQG----KEIDFK 65
Query: 903 ISGYCEQNDI---HSPGLTVLE-SLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLS 957
S +N I H VL+ S++ + WL R P T+ FV++ + ++
Sbjct: 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIF 119
Query: 958 GALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L I+ LS Q + + IA N IV MDEPTS L + +
Sbjct: 120 DEL----DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELI 1062
+R + G IV H+ +IF+ DE+ + R G+ I PL + + I
Sbjct: 176 IIRKLKERGCGIVYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKI 226
|
Length = 491 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 9e-06
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ IA L P ++ DEPTS LD V++ ++++ GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 9e-06
Identities = 46/195 (23%), Positives = 85/195 (43%), Gaps = 17/195 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L + + G + A++G +G+GK+TL V+AG I+EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 903 IS------GYCEQNDIHSPGLTVLESLLFS-----AWLRLPSEIELETQRAFVEEVMELV 951
+ + Q I PG++ + L + + LP LE F+E + E +
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE----FLEIINEKL 134
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
+L + + + G S ++KR I + + + +DE SGLD A I+ +
Sbjct: 135 KLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 1012 RNIVNTGRTIVCTIH 1026
++ + +I+ H
Sbjct: 195 NKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 9e-06
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 25/196 (12%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA--RISGYCEQNDIHSPG 916
ALVG +G+GK+TL +L G + EG+I + G P + + R Q D
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD----- 423
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGL 969
V+ + F A + L +I E V + +E V+L L+ +L +G G N L
Sbjct: 424 -PVVLADTFLANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQG-NNL 477
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
S Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 478 SVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLS 536
Query: 1030 IDIFESFDELLFMKRG 1045
I E+ D +L + RG
Sbjct: 537 T-IVEA-DTILVLHRG 550
|
Length = 592 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 9e-06
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 39/168 (23%)
Query: 857 LTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ 909
+TAL+G SG GK+TL+ D++ G K I G + + G ++ +
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDG----EDIYG-------- 74
Query: 910 NDIHSPGLTVLESLLFSAWLRLPSEIE------LETQRAFVEEVMELVELTSLSGALI-- 961
+I L + ++F P I L Q ++V++ V SL GA +
Sbjct: 75 -NIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD 133
Query: 962 ------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
GLS Q++RL IA + P ++ MDEPTS LD A
Sbjct: 134 EVKDRLKSHAF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 61/247 (24%), Positives = 99/247 (40%), Gaps = 60/247 (24%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
LD ++ I L+GP +GK+TLL + L SG I NG + R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKE---ELPTSGTIRVNGQDVSDL-RGRA 72
Query: 211 SAYVSQ------QDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
Y+ + QD++ + + V E + FA + GV + E+ +R
Sbjct: 73 IPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPR-----EIRKR----------- 116
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
V ++++GL + +SGG+++R+ +V
Sbjct: 117 ------------------VPAALELVGLSHKHRA-----LPAELSGGEQQRVAIARAIVN 153
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD----VI 379
+L DE + LD TT++I+ LK +A GTTV+ A A EL D VI
Sbjct: 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVV----ATHAKELVDTTRHRVI 207
Query: 380 LLSEGQI 386
L G++
Sbjct: 208 ALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 58/248 (23%), Positives = 95/248 (38%), Gaps = 60/248 (24%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEF- 205
LD +S I+ LLGP GKTTLL +AG + SG+I +G K+
Sbjct: 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-----FETPTSGEILLDG---KDIT 65
Query: 206 -VPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+PP R V Q +TV E + F + + + E+ R
Sbjct: 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKA-----EIKER---------- 110
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
V + ++ L+ A + +SGGQ++R+ LV
Sbjct: 111 -------------------VAEALDLVQLEGYA-----NRKPSQLSGGQQQRVAIARALV 146
Query: 323 GPARVLFMDEISNGLDSS--TTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
+VL +DE LD Q+ +K L+ G T + + EA + D +
Sbjct: 147 NEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL----GITFVFVTHDQEEALTMSDRIA 202
Query: 380 LLSEGQIV 387
++++G+I
Sbjct: 203 VMNKGKIQ 210
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 1e-05
Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 13/96 (13%)
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI----- 362
SGG ++R+ L ++L DE + LD + QI+ LK R GT +I
Sbjct: 155 SGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK-GTALILITHD 213
Query: 363 -SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
+ E+ D V ++ G+IV +GP +
Sbjct: 214 LGV------VAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-05
Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 46/267 (17%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M + I + + + L ++ + P + LLG +GK+TL+ L+G H
Sbjct: 1 MATPYISMAGIGK-SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGI---HE 56
Query: 190 QVSGKITYNGHGFKEFVPPRTS----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
G IT N + + + + Q+ + E+TV E L
Sbjct: 57 PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENL--------------Y 102
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
I + K+ G+ D M+ A ++ +GL D V +
Sbjct: 103 IGRHLTK-KVCGV-NIIDWR-EMRVRA----------AMMLLRVGLKVDLDEKVAN---- 145
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL--DGTTVIS 363
+S K+ L + L+ A+V+ MDE + SS T + + YL L +GT ++
Sbjct: 146 -LSISHKQMLEIAKTLMLDAKVIIMDEPT----SSLTNKEVDYLFLIMNQLRKEGTAIVY 200
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQG 390
+ E + D ++ +G V G
Sbjct: 201 ISHKLAEIRRICDRYTVMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 1e-05
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 28/106 (26%)
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGGQK+R VG AR VL DE ++ LD TT I+ L+ R L T
Sbjct: 141 LSGGQKQR-------VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLT 193
Query: 360 TVI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFA 400
V+ +++ + D V ++ +G++V +G V + FA
Sbjct: 194 IVLITHEMEVVK------RICDRVAVMEKGEVVEEGT---VEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 70/288 (24%), Positives = 120/288 (41%), Gaps = 56/288 (19%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 192
L ++ G + L +++ I +++T L+GP GK+TLL +L R+ + ++
Sbjct: 5 ENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NRMNDLVPGVRIE 60
Query: 193 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
GK+ ++G + + V E+ R + F S YD I A
Sbjct: 61 GKVLFDGQD------------IYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNI---AYG 105
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQ 311
++ GIK ++LD +VE +K L D D L + G+SGGQ
Sbjct: 106 PRLHGIKDKKELD--------------EIVEESLKKAALWDEVKDRL--HDSALGLSGGQ 149
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPA 368
++RL L VL +DE ++ LD T +I I+ LK T++ +
Sbjct: 150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK------YTIVIVTHNM 203
Query: 369 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D +G++V GP + F+ PK K D++
Sbjct: 204 QQAARISDRTAFFYDGELVEYGPTEQI--------FTNPKEKRTEDYI 243
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 57/258 (22%), Positives = 85/258 (32%), Gaps = 60/258 (23%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP- 207
T L LSG +R + L+GP +GK+TLL +AG SG I + G + +
Sbjct: 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSAT 68
Query: 208 --PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R AY+SQQ M V L + +
Sbjct: 69 ELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLN--------------------- 107
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG 323
+ L LD D L +SGG Q+ RL L +
Sbjct: 108 ------------------DVAGALALD---DKL--GRSTNQLSGGEWQRVRLAAVVLQIT 144
Query: 324 P-----ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
P ++L +DE N LD + + + L + G ++
Sbjct: 145 PDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQ--GLAIVMSSHDLNHTLRHAHRA 202
Query: 379 ILLSEGQIVYQGPRVSVL 396
LL G+++ G R VL
Sbjct: 203 WLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 1e-05
Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 37/184 (20%)
Query: 831 ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGD 887
+L+ G L ++L N++ + R G + G SG GK+TL+ ++A +G ++
Sbjct: 9 QLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEG 68
Query: 888 IYISGYPKRQETFARISGYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELET--QRA 942
IS E + + YC Q +P L TV ++L+F P +I +
Sbjct: 69 EDISTLKP--EIYRQQVSYCAQ----TPTLFGDTVYDNLIF------PWQIRNQQPDPAI 116
Query: 943 FVEEVMELVELTSLSGALIGLP------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
F++++ LP I LS +++R+++ L P ++ +DE T
Sbjct: 117 FLDDLERF-----------ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165
Query: 997 SGLD 1000
S LD
Sbjct: 166 SALD 169
|
Length = 225 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-05
Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 54/184 (29%)
Query: 857 LTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
+TAL+G SG GK+T + L R I+G + + G DI+
Sbjct: 73 VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG-----------------QDIY 115
Query: 914 SPGLTVLE-----SLLFSAWLRLPSEI------------ELETQ-------RAFVEEVME 949
G+ ++E ++F + P I ++ T R + E
Sbjct: 116 QDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 950 LVELTSLSGALIGLPGIN--------GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
LVE + AL +N GLS Q++RL IA L +P ++ MDEP S LD
Sbjct: 176 LVERSLRQAALWD--EVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDP 233
Query: 1002 RAAA 1005
A +
Sbjct: 234 IATS 237
|
Length = 305 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 43/185 (23%), Positives = 78/185 (42%), Gaps = 22/185 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN-- 910
RPG + ++G +G GK+T + +LAG + + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQNYF 153
Query: 911 ---------DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+H P L + ++ ++ +R +EV+E + L ++
Sbjct: 154 KKLYEGELRAVHKPQYVDLIPKVVKG--KVGELLKKVDERGKFDEVVERLGLENVLDR-- 209
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
++ LS + +R+ IA L+ + + F DEP+S LD R R +R + G+ +
Sbjct: 210 ---DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYV 266
Query: 1022 VCTIH 1026
+ H
Sbjct: 267 IVVEH 271
|
Length = 591 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 45/167 (26%), Positives = 66/167 (39%), Gaps = 38/167 (22%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII--EGDIYISGYPKRQETFARISGYCEQN 910
R G LVG SG+GK+TL G +I +G+I G + + +
Sbjct: 311 RRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDGLSRKEMRPL--RR 363
Query: 911 DIH----------SPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELVELTSLSGA 959
+ SP +TV + + LR+ +R V E +E V
Sbjct: 364 RMQVVFQDPYGSLSPRMTVGQ--IIEEGLRVHEPKLSAAERDQRVIEALEEV-------- 413
Query: 960 LIGLPG--INGLSTE----QRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GL N E QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 414 --GLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.0 bits (114), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 1e-05
Identities = 59/289 (20%), Positives = 108/289 (37%), Gaps = 58/289 (20%)
Query: 782 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
NV + R Y ++S SL K K +
Sbjct: 7 SNVSKKFRIYHEKSYSLK-KRLKG------------LAKGGRKVAEFWA----------- 42
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQE 898
L +++ G ++G +GAGK+TL+ ++A GI + G + ++G
Sbjct: 43 ---LKDISFEIYKGERVGIIGHNGAGKSTLLKLIA-----GIYKPTSGKVKVTG------ 88
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+++ E P LT E++ + + E++ V+E++E EL G
Sbjct: 89 ---KVAPLIELGAGFDPELTGRENIYLRGLILGLTRKEID---EKVDEIIEFAEL----G 138
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
I P + S+ RL +V P I+ +DE + DA + + +V
Sbjct: 139 DFIDQP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 1067
+TIV H I + D ++++ G++ G E+I +E
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLEH-GQIRMEGSPE----EVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 15/102 (14%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGF---K 203
T+L+D+S I + LLGP SGK+TLL +AG L+ SG I +G +
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAG-----LEEPDSGSILIDGEDLTDLE 68
Query: 204 EFVPP--RTSAYVSQQDWQVAEMTVRETLDFA---GQCQGVG 240
+ +PP R V Q +TV E + GQ Q V
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIALGLSGGQQQRVA 110
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 39/191 (20%), Positives = 67/191 (35%), Gaps = 52/191 (27%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
+ +L+D++ + +LGP GK+TLL +AG SG++ +G
Sbjct: 14 GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTGP 70
Query: 206 VPPRTSAYVSQQD----WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD 261
P YV Q+D W +TV + + + +G RE+
Sbjct: 71 GPDI--GYVFQEDALLPW----LTVLDNVALGLELRGKSKA-------EARERA-----K 112
Query: 262 EDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
E L++ GL D +SGG ++R+ L
Sbjct: 113 ELLELV----------------------GLAGFEDKYP-----HQLSGGMRQRVAIARAL 145
Query: 322 VGPARVLFMDE 332
++L +DE
Sbjct: 146 ATRPKLLLLDE 156
|
Length = 248 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 43/209 (20%), Positives = 78/209 (37%), Gaps = 65/209 (31%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K IL ++ ++ + ++GP SGK+TL + G + + G+I ++G
Sbjct: 16 KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDG------- 67
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR---------EKIAG 257
+D + E++ E AR +I G
Sbjct: 68 ----------ED--ILELSP--------------------DERARAGIFLAFQYPVEIPG 95
Query: 258 IKPDEDLDIFMKSFALGGQKTSLV---VEYIMKILGLDTCADTLVGDEMLK-----GISG 309
+ + L M + ++ ++LGLD +E L+ G SG
Sbjct: 96 VTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLD--------EEFLERYVNEGFSG 147
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLD 338
G+KKR +LL+ ++ +DE +GLD
Sbjct: 148 GEKKRNEILQLLLLEPKLAILDEPDSGLD 176
|
Length = 251 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-05
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 50/212 (23%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT---LLLALAGRLGHHLQVSGK-IT 196
Y R +L D+S + P +T L+GP SGK+T LL G + + GK I+
Sbjct: 21 YP-TRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPIS 79
Query: 197 YNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK-YDMITELARREKI 255
H + + V Q+ + ++++ + + G+ S ++ + E A++
Sbjct: 80 QYEHKYLH----SKVSLVGQEP-VLFARSLQDNIAY-----GLQSCSFECVKEAAQKAHA 129
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG--ISGGQKK 313
F+ A G DT VG+ KG +SGGQK+
Sbjct: 130 HS---------FISELASG--------------------YDTEVGE---KGSQLSGGQKQ 157
Query: 314 RLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
R+ L+ +VL +DE ++ LD+ + Q+
Sbjct: 158 RVAIARALIRNPQVLILDEATSALDAESEQQV 189
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (113), Expect = 2e-05
Identities = 68/278 (24%), Positives = 111/278 (39%), Gaps = 52/278 (18%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVP 207
L D+ ++ T L+G SGK+TLL L G L + V + + KE P
Sbjct: 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81
Query: 208 PRTSAYVSQQ--DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
R V Q + Q+ E TV + + F Q G+ + + EKIA K
Sbjct: 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKE--------KAEKIAAEK------ 127
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
++++GL ++ +SGGQ +R+ +L
Sbjct: 128 --------------------LEMVGLAD----EFWEKSPFELSGGQMRRVAIAGILAMEP 163
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
VL +DE + GLD ++++ + H + G TV+ + + + D V LL +
Sbjct: 164 EVLVLDEPTAGLDPKARIEMMQLFESIHQS----GQTVVLVTHLMDDVADYADYVYLLEK 219
Query: 384 GQIVYQGPRVSV---LDFFASMGFSCPKRKNVADFLQE 418
G I+ G V +DF + PK + AD LQ+
Sbjct: 220 GHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-05
Identities = 77/328 (23%), Positives = 132/328 (40%), Gaps = 74/328 (22%)
Query: 740 LGYTLLFNALFTFFLSYLNPLGK--------QQAVVSKKELQERDRRRKGENVVIELREY 791
LG + FNAL ++FL PL Q A V+ L E Y
Sbjct: 411 LGQLITFNALLSYFL---TPLENIINLQPKLQAARVANNRLNE---------------VY 452
Query: 792 LQRSSSLNGKYFKQKGMV---LPFQPLSMAFG-NINYFVDVPVELKQEGVLEDRLQLLVN 847
L S +N K + + + +S ++G N D+ + +K
Sbjct: 453 LVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSK---------- 502
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARIS 904
T +VG+SG+GK+TL +L G G+I ++G+ + T +
Sbjct: 503 ----------TTIVGMSGSGKSTLAKLLVGFFQAR--SGEILLNGFSLKDIDRHTLRQFI 550
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVE-----EVMELVELTSLSGA 959
Y Q G ++LE+LL A + S+ E+ E E M L T LS
Sbjct: 551 NYLPQEPYIFSG-SILENLLLGAKENV-SQDEIWAACEIAEIKDDIENMPLGYQTELSEE 608
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TG 1018
G + +S Q++R+ +A L+ + ++ +DE TS LD + V N++N
Sbjct: 609 -----GSS-ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEK---KIVNNLLNLQD 659
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+TI+ H+ + + + D+++ + G
Sbjct: 660 KTIIFVAHR--LSVAKQSDKIIVLDHGK 685
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.2 bits (112), Expect = 2e-05
Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 47/234 (20%)
Query: 160 PSRLTLLLGPPSSGKTTLL---LALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 216
L LLGP +GKTTLL L L ++V+G G +VP R +
Sbjct: 5 KGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-----HE 59
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
W ++V T+ +G+ +G RR +A FA
Sbjct: 60 FAWDFP-ISVAHTV-MSGRTGHIG--------WLRRPCVA-------------DFA---- 92
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
V ++ +GL AD VG+ +SGGQ++R+ L VL +DE G
Sbjct: 93 ----AVRDALRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTG 143
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
LD T + + A GT ++ +A D V+LL+ G+++ G
Sbjct: 144 LDMPTQELLTELFI--ELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 2e-05
Identities = 74/298 (24%), Positives = 120/298 (40%), Gaps = 77/298 (25%)
Query: 136 RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVS 192
R L +Y G++ L D++ I +++T L+GP GK+TLL L R+ + +V
Sbjct: 11 RDLNLYYGDK---HALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVE 66
Query: 193 GKITYNGHG-FKEFVPP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
G++ +G + V R V Q+ M++ + + + G+
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKP-NPFPMSIYDNVAY-----GL-------- 112
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK-- 305
++ GIK E +I S +K +L E V D + K
Sbjct: 113 ------RLHGIKDKELDEIVESSL----KKAALWDE---------------VKDRLHKSA 147
Query: 306 -GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 361
G+SGGQ++RL L VL MDE ++ LD +T +I I LK T V
Sbjct: 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-----KYTIV 202
Query: 362 I---SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
I ++ Q A + D G++V GP + F+ PK K D++
Sbjct: 203 IVTHNMQQ----AARVSDYTAFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248
|
Length = 253 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 2e-05
Identities = 64/249 (25%), Positives = 91/249 (36%), Gaps = 58/249 (23%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L LS I T LLGP +GK+TLLL L G +L G++ G +E V
Sbjct: 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI---YLPQRGRVKVMG---RE-VNAEN 73
Query: 211 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+V + D QV TV + + F G+ E+ RR + A
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-----EVERRVEEA------ 122
Query: 263 DLDIF-MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
L M F D+ +S GQKKR+ +L
Sbjct: 123 -LKAVRMWDFR----------------------------DKPPYHLSYGQKKRVAIAGVL 153
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
V+ +DE LD +++ L G TVI A E D VI+L
Sbjct: 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVL 211
Query: 382 SEGQIVYQG 390
EG+++ +G
Sbjct: 212 KEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-05
Identities = 59/213 (27%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
Q + +V+ + G A+VG +GAGKTTL+++L ++ G I I G
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDG--------ID 398
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG---- 958
I+ ++ S ++ LF+ +R I L + A EEV E + +
Sbjct: 399 INTVTRESLRKSIATVFQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAHDFILK 456
Query: 959 ------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+G G N LS +R+RL IA ++ N I+ +DE TS LD A V +
Sbjct: 457 RSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI- 514
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT H+ S + D +LF+ +G
Sbjct: 515 DALRKNRTTFIIAHRLS--TVRNADLVLFLDQG 545
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 2e-05
Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 49/266 (18%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
L LD++S I ++G SGKTT + L L L +G I + FK+
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL---LPDTGTIEWI---FKDEKN 73
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI--------- 258
+ + + + ++ +++T K I E+ RR G+
Sbjct: 74 KKKTKEK---EKVLEKLVIQKT---------RFKKIKKIKEIRRR---VGVVFQFAEYQL 118
Query: 259 -KPDEDLDIFMKSFALGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLK----GISGG 310
+ + DI ++G K +YI +++GLD + L+ +SGG
Sbjct: 119 FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYI-ELVGLD--------ESYLQRSPFELSGG 169
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
QK+R+ +L L DE + GLD +I++ + + G T+I +
Sbjct: 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK--QGKTIILVTHDLDN 227
Query: 371 AYELFDDVILLSEGQIVYQGPRVSVL 396
E I +G+I+ G +L
Sbjct: 228 VLEWTKRTIFFKDGKIIKDGDTYDIL 253
|
Length = 305 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 56/232 (24%), Positives = 94/232 (40%), Gaps = 56/232 (24%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY------PK-- 895
+ + G + ++G+SG+GK+TL+ R +IE G+I + G
Sbjct: 46 DASLDVEEGEIFVIMGLSGSGKSTLV-----RLLNRLIEPTRGEILVDGKDIAKLSAAEL 100
Query: 896 ---RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R++ + + Q+ P TVLE++ F L + + + E +ELV
Sbjct: 101 RELRRKKISMVF----QSFALLPHRTVLENVAFG--LEV-QGVPKAEREERALEALELV- 152
Query: 953 LTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----ARA 1003
GL G N LS ++R+ +A L +P I+ MDE S LD
Sbjct: 153 ---------GLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203
Query: 1004 AAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF---DELLFMKRGGELIYAG 1052
++ + +TIV H D+ E+ D + MK GE++ G
Sbjct: 204 QDELLELQAKL---KKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 39/138 (28%), Positives = 56/138 (40%), Gaps = 41/138 (29%)
Query: 307 ISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT 359
+SGGQK+R V AR VL DE ++ LD +TT I++ LK R L G
Sbjct: 141 LSGGQKQR-------VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GL 192
Query: 360 T---------VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRK 410
T V+ + D V ++ G++V QG V + F+ PK
Sbjct: 193 TIVLITHEMDVVK---------RICDRVAVIDAGRLVEQGT---VSEVFSH-----PKHP 235
Query: 411 NVADFLQEVTSKKDQEQY 428
+F+Q E Y
Sbjct: 236 LTREFIQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 56/228 (24%), Positives = 92/228 (40%), Gaps = 51/228 (22%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQE- 898
Q + +V F G A+VG +G+GK+TL+ + + T G + DI I+ K +
Sbjct: 21 QAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYI 80
Query: 899 -TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------------------LE 938
+ G Q ES LF + EI L
Sbjct: 81 RPVRKRIGMVFQ---------FPESQLFED--TVEREIIFGPKNFKMNLDEVKNYAHRLL 129
Query: 939 TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
F +VM +SG Q +++ I L NP I+ +DEPT+G
Sbjct: 130 MDLGFSRDVMSQSPF-QMSGG-------------QMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
LD ++ VMR ++++ + +TI+ H + ++ DE++ MK G
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEG 222
|
Length = 286 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 37/206 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQN- 910
G T++VG +G+GK+T+ ++ G + G+I+ + + F ++ G QN
Sbjct: 35 GQWTSIVGHNGSGKSTIAKLMIGIEKVK--SGEIFYNNQAITDDNFEKLRKHIGIVFQNP 92
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SLSGALIG 962
D G V + F + + V E ++ V++ +LSG
Sbjct: 93 DNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNALSGG--- 146
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTI 1021
Q++R+ IA L NPS++ +DE TS LD A ++ VR + TI
Sbjct: 147 ----------QKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITI 196
Query: 1022 VCTIHQPSIDIFESF--DELLFMKRG 1045
+ H D+ E+ D ++ M +G
Sbjct: 197 ISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 26/198 (13%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISGY----- 893
Q L ++T G L+G SGAGK++L+ VL ++E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 894 ----PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
K R G Q P LTV ++L+ A R+ + L +A + +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRV---LGLSKDQA-LARAEK 124
Query: 950 LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
L+E L P LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 125 LLERLRLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1010 TVRNIVNTGRTIVCTIHQ 1027
+R + TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 63/244 (25%), Positives = 103/244 (42%), Gaps = 49/244 (20%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K T ++++S + + + LLGP +GK+TLL + G L SG+I ++GH
Sbjct: 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL---RPTSGEIIFDGH------ 62
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
W R+ L +GS +I E + E+L +
Sbjct: 63 -----------PWT------RKDL------HKIGS---LIESPPLYENLTA---RENLKV 93
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
L G S + E ++ I+ L T G + K S G K+RL L+ +
Sbjct: 94 HTT---LLGLPDSRIDE-VLNIVDL-----TNTGKKKAKQFSLGMKQRLGIAIALLNHPK 144
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
+L +DE +NGLD ++ + ++ G TVI E +L D + ++SEG +
Sbjct: 145 LLILDEPTNGLDPIGIQELRELIRSFPE--QGITVILSSHILSEVQQLADHIGIISEGVL 202
Query: 387 VYQG 390
YQG
Sbjct: 203 GYQG 206
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 46/229 (20%)
Query: 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP--RTSAYVSQQDWQV 221
T ++GP SGK+TLL +AG SG++ NG PP R + + Q++
Sbjct: 27 TAIVGPSGSGKSTLLNLIAGFE---TPQSGRVLINGVDVT-AAPPADRPVSMLFQENNLF 82
Query: 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLV 281
A +TV + + G+ + E R+ I L K
Sbjct: 83 AHLTVEQNVGL-----GLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP--------- 126
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
L SGG+++R+ +LV VL +DE LD +
Sbjct: 127 --------------GEL---------SGGERQRVALARVLVRDKPVLLLDEPFAALDPAL 163
Query: 342 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
+++ L A TV+ + +A L V+ L G+I QG
Sbjct: 164 RAEMLD-LVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 32/124 (25%), Positives = 57/124 (45%), Gaps = 5/124 (4%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQK+R+ +L ++ DE ++ LD +I K + R T+IS+
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM-VDLRKTRKKTLISITH 201
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQEVTSKK 423
EA L D VI+ SEG+++ QG +L + P ++ L+ +
Sbjct: 202 DMDEAI-LADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKGIDPTY 260
Query: 424 DQEQ 427
++E+
Sbjct: 261 NEEE 264
|
Length = 271 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-05
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
G+SGGQK+R+ +L +L DE + GLD +++++ + + + TV +
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA--NNKTVFVIT 233
Query: 366 QPAPEAYELFDDVILLSEGQIVYQG 390
E+ D+VI++ +G+I+ G
Sbjct: 234 HTMEHVLEVADEVIVMDKGKILKTG 258
|
Length = 320 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 3e-05
Identities = 60/249 (24%), Positives = 95/249 (38%), Gaps = 51/249 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
++ +L I LLGP GKTT+L +AG + SG+I +G V
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-----FETPDSGRIMLDGQDITH-V 81
Query: 207 PP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
P R V Q MTV E + F + Q + E+ R
Sbjct: 82 PAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKTPAA-----EITPR------------ 124
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
V ++++ L+ A +SGGQ++R+ +V
Sbjct: 125 -----------------VMEALRMVQLEEFAQRKPHQ-----LSGGQQQRVAIARAVVNK 162
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+VL +DE + LD Q+ LK R L G T + + EA + D ++++ +G
Sbjct: 163 PKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDG 221
Query: 385 QIVYQG-PR 392
+I G PR
Sbjct: 222 RIEQDGTPR 230
|
Length = 375 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 3e-05
Identities = 48/198 (24%), Positives = 77/198 (38%), Gaps = 62/198 (31%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
Q L +++ +TA +G SG GK+TL+ D++ + IEG+I + G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDG--- 91
Query: 896 RQETFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQ---- 940
+I+ + V E ++F P I L Q
Sbjct: 92 --------------QNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINN 137
Query: 941 RAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVANPSI 989
R ++E +E SL GA + GLS Q++RL IA + P +
Sbjct: 138 RRVLDEAVE----RSLRGAALWDEVKDRLHENAF----GLSGGQQQRLVIARAIAIEPEV 189
Query: 990 VFMDEPTSGLDARAAAIV 1007
+ +DEPTS LD + +
Sbjct: 190 LLLDEPTSALDPISTLKI 207
|
Length = 272 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 9/91 (9%)
Query: 969 LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS + +R+ +A EL + P ++ +DEP++GL + ++ ++ +++ G T++ H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 1027 QPSIDIFESFDELLFM-----KRGGELIYAG 1052
D+ S D ++ K GG+++++G
Sbjct: 148 NL--DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-05
Identities = 63/248 (25%), Positives = 100/248 (40%), Gaps = 53/248 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L +L+ I+P ++GP SGK+TL L RL + G++ +G P
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-KLLQRL--YTPQHGQVLVDGVDLAIADP-- 526
Query: 210 TSAYVSQQDWQVAEMTV--RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
W +M V +E + F+ R+ IA P +
Sbjct: 527 --------AWLRRQMGVVLQENVLFSRSI---------------RDNIALCNPGAPFEHV 563
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+ + L G I L +T VG E +SGGQ++R+ LVG R+
Sbjct: 564 IHAAKLAGAHDF--------ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRI 614
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLS 382
L DE ++ LD + I++ ++ R G TVI + A+ L D +I+L
Sbjct: 615 LIFDEATSALDYESEALIMRNMREICR---GRTVIII------AHRLSTVRACDRIIVLE 665
Query: 383 EGQIVYQG 390
+GQI G
Sbjct: 666 KGQIAESG 673
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 4e-05
Identities = 42/189 (22%), Positives = 76/189 (40%), Gaps = 22/189 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR------KTGGIIEGDIYISGY--PKRQETFARIS 904
R G + LVG +G GK+T + +LAG+ K + D + + + Q F ++
Sbjct: 24 REGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLL 83
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQ---RAFVEEVMELVELTSLSGALI 961
+ I P L EL + R ++E+++ +EL +
Sbjct: 84 EG-DVKVIVKPQYVDLIPKAVKG-----KVGELLKKKDERGKLDELVDQLELRHVLDR-- 135
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
I+ LS + +R+ IA L + F DEP+S LD + R +R + +
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 1022 VCTIHQPSI 1030
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 53/207 (25%), Positives = 84/207 (40%), Gaps = 43/207 (20%)
Query: 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISG 892
E +L L +N G L + G +GAGKT+L+ +LAG R G++ G
Sbjct: 13 ERILFSGLSFTLN------AGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQG 62
Query: 893 YPKRQ--ETFARISGYCEQNDIHSPG----LTVLESLLFSAWLRLPSEIELETQRAFVEE 946
P R+ + + + Y H PG LT LE+L F L P + E A
Sbjct: 63 EPIRRQRDEYHQDLLYLG----HQPGIKTELTALENLRFYQRLHGPGDDE-ALWEAL--- 114
Query: 947 VMELVELTSLSGALIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
A +GL G + LS Q++R+ +A + + +DEP + +D
Sbjct: 115 ------------AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDK 162
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
+ A + + G ++ T HQ
Sbjct: 163 QGVARLEALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 5e-05
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ L+ +L +DE ++ LD T I++ L+ G TVI ++
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALR---ALAKGKTVI-VIA 152
Query: 367 PAPEAYELFDDVILLSEGQ 385
D +I+L +G+
Sbjct: 153 HRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 50/219 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF-----KE 204
L D+S IR L GP +GKTTLL L G L G++ G ++
Sbjct: 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL---TPSRGQVRIAGEDVNRLRGRQ 73
Query: 205 FVPPRTSAYVSQQDWQ-VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
R V QD++ + + TV E + + +G E+ RR
Sbjct: 74 LPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKE-----REIQRR----------- 117
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
V ++ +GL+ AD +SGG+++R+ +V
Sbjct: 118 ------------------VGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAIVN 154
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+L DE + LD + +I+ LK + GTTVI
Sbjct: 155 SPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVI 191
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 5e-05
Identities = 59/239 (24%), Positives = 97/239 (40%), Gaps = 40/239 (16%)
Query: 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAY 213
++ + L+GP GKTT L A+ R+ H L +V+G+I +G ++ PR
Sbjct: 27 VQRGTVNALIGPSGCGKTTFLRAI-NRM-HDLTPGARVTGRILLDG---QDIYGPR---- 77
Query: 214 VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFAL 273
V + +R + Q + + K+AGI+ D D M+
Sbjct: 78 -------VDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIR---DRDHLME---- 123
Query: 274 GGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
V E ++ L D D L G+SGGQ++RL L +L MDE
Sbjct: 124 -------VAERSLRGAALWDEVKDRL--KTPATGLSGGQQQRLCIARALAVEPEILLMDE 174
Query: 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391
++ LD ++T +I + + TT+I + +A + D G +V GP
Sbjct: 175 PTSALDPASTARIEDLMTDLKKV---TTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230
|
Length = 252 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 5e-05
Identities = 59/247 (23%), Positives = 106/247 (42%), Gaps = 50/247 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T+ L+ + + L+GP +GKT+LL AL G L + G + NG +E P
Sbjct: 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQ----GSLKINGIELRELDPE 419
Query: 209 ---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ ++V Q + Q+ T+R+ + D DE L
Sbjct: 420 SWRKHLSWVGQ-NPQLPHGTLRDNVLLG--------NPDA--------------SDEQLQ 456
Query: 266 -IFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
++ E++ + GLDT +GD+ G+S GQ +RL L+
Sbjct: 457 QALENAWVS---------EFLPLLPQGLDT----PIGDQAA-GLSVGQAQRLALARALLQ 502
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383
P ++L +DE + LD+ + +++ L ++R T + ++ E +D + ++ +
Sbjct: 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASR---RQTTL-MVTHQLEDLAQWDQIWVMQD 558
Query: 384 GQIVYQG 390
GQIV QG
Sbjct: 559 GQIVQQG 565
|
Length = 588 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 5e-05
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 9/127 (7%)
Query: 273 LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332
L G+K ++ VEY + I+GL+ T +K +SGG+ +R++ L VL +DE
Sbjct: 103 LKGEK-NVDVEYYLSIVGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157
Query: 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPR 392
++ LD ++T +II+ L + TVI + +A + D L++G +V
Sbjct: 158 PTSALDPTST-EIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA-- 214
Query: 393 VSVLDFF 399
DFF
Sbjct: 215 -KTYDFF 220
|
Length = 241 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-05
Identities = 63/268 (23%), Positives = 102/268 (38%), Gaps = 79/268 (29%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISG--------- 892
L NV G L+G +G+GK+TL+ L G +G II + I+
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82
Query: 893 --------YPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 941
YP+ Q ET + + N GL SE E+E +
Sbjct: 83 KKVGLVFQYPEYQLFEETIEKDIAFGPIN----LGL---------------SEEEIENR- 122
Query: 942 AFVEEVMELVELT----------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991
V+ M +V L LSG Q++R+ IA + P I+
Sbjct: 123 --VKRAMNIVGLDYEDYKDKSPFELSGG-------------QKRRVAIAGVVAMEPKILI 167
Query: 992 MDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050
+DEPT+GLD + ++ ++ + TI+ H D+ + D ++ M + G+
Sbjct: 168 LDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCEL 225
Query: 1051 AGPLGSKSCELIKYFEAVE----GVPKI 1074
G E+ K E +E VP++
Sbjct: 226 QGT----PREVFKEVETLESIGLAVPQV 249
|
Length = 287 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 45/167 (26%), Positives = 79/167 (47%), Gaps = 29/167 (17%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQETFARIS 904
V+ R G A++G +G+GK+TL +LAG +IE G+I I+ +P ++ S
Sbjct: 32 VSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGEILINDHPLHFGDYSFRS 86
Query: 905 G-----YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ + N +P L + + LRL +++E E +R + E + +V L
Sbjct: 87 KRIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------ 138
Query: 960 LIGLPG-----INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
LP + L+ Q++R+ +A L+ P I+ DE + LD
Sbjct: 139 ---LPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 6e-05
Identities = 49/178 (27%), Positives = 73/178 (41%), Gaps = 44/178 (24%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTT----LMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ N++ RPG LVG SG+GK+T L+ ++ + G+I+ G P
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 901 ARISGYCEQ--------NDIHSPGLTVLESLLFSAWLRLPSEIELETQR-AFVEEVMELV 951
++ + N +P L VL+ + LR+ QR V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 952 EL---------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L SG QR+R+ IA L+ PS++ +DEPTS LD
Sbjct: 413 GLDPETRHRYPAEFSGG-------------QRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (109), Expect = 6e-05
Identities = 56/217 (25%), Positives = 93/217 (42%), Gaps = 20/217 (9%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
E + L V+ + G +++G +G+GK+T ++ G EG + I G E
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE--FEGKVKIDGELLTAE 74
Query: 899 T---FARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R G QN D G TV + + F +E Q EE+++ V+
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFG----------MENQGIPREEMIKRVDEA 124
Query: 955 SLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L+ ++ LS Q++R+ +A + P I+ +DE TS LD +MR +
Sbjct: 125 LLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIH 184
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
I + V +I +D S D +L M + GE+I
Sbjct: 185 EIKEKYQLTVLSITH-DLDEAASSDRILVM-KAGEII 219
|
Length = 277 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 7e-05
Identities = 33/115 (28%), Positives = 57/115 (49%), Gaps = 18/115 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT VG+ LK +SGG+K+R+ ++ +L +DE ++ LD+ T I L+ +
Sbjct: 390 DTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA- 447
Query: 356 LDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGPRVSVLD---FFASM 402
TT++ A+ L D++I+L G+IV +G +L +A M
Sbjct: 448 -GRTTLVI-------AHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 51/182 (28%), Positives = 76/182 (41%), Gaps = 40/182 (21%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ Q+L N+ F +TA++G SG GK+TL+ L + I+ G
Sbjct: 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRAL--NRMNDIVSG-------------- 59
Query: 901 ARISG--YCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELETQRAFVEEVM----- 948
AR+ G + +I+SP L V+ ++F P I AF ++
Sbjct: 60 ARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIF--DNVAFGPRMLGTTAQ 117
Query: 949 ----ELVELTSLSGALIGLPGIN------GLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
E+VE + AL N LS Q++RL IA L P ++ MDEP S
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 999 LD 1000
LD
Sbjct: 178 LD 179
|
Length = 251 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 9e-05
Identities = 52/241 (21%), Positives = 97/241 (40%), Gaps = 51/241 (21%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE--FVPP 208
LD++S + R+ LGP +GK+T + + G L SG + G +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL---PPDSGSVQVCGEDVLQNPKEVQ 74
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
R Y+ + + +M VRE L F G+ + ++++ +
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-------LLKQRVEEMI--------- 118
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L E KI +S G ++R+ + L+ +VL
Sbjct: 119 -------ELVGLRPEQHKKI----------------GQLSKGYRQRVGLAQALIHDPKVL 155
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS--LLQPAPEAYELFDDVILLSEGQI 386
+DE + GLD + +I +K+ D T ++S ++Q E + D VI++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNI--GKDKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 387 V 387
V
Sbjct: 211 V 211
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 9e-05
Identities = 49/220 (22%), Positives = 77/220 (35%), Gaps = 42/220 (19%)
Query: 825 FVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTG 881
++ + L L RPG + G SGAGKT+L+ LAG +G
Sbjct: 395 LENLSLRTPDGQTLLSELNF------EVRPGERLLITGESGAGKTSLLRALAGLWPWGSG 448
Query: 882 GII----EGDIYISGYPK-RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936
I +++ P Q T Y S
Sbjct: 449 RISMPADSALLFLPQRPYLPQGTLREALCYPNAAPDFSD--------------------- 487
Query: 937 LETQRAFVEEVMELVELTSLSGALIGL-PGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
A + V+ V L L+ L LS +++RL A L+ P VF+DE
Sbjct: 488 -----AELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
TS LD + + ++ + T++ H+P++ F S
Sbjct: 543 TSALDEETEDRLYQLLKEEL-PDATVISVGHRPTLWNFHS 581
|
Length = 604 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 9e-05
Identities = 59/206 (28%), Positives = 84/206 (40%), Gaps = 42/206 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IEGDIYISGYPKRQE 898
Q L NV+ +TAL+G SG GK+T + L R I IEG + I
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCL-NRMNDLIKNCRIEGKVSI-------- 76
Query: 899 TFARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIE------LETQRAFVEEV 947
E DI+ P + V+E ++F P I A +++
Sbjct: 77 ---------EGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDL 127
Query: 948 MELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+VE S AL + P ++ LS Q++RL IA L P I+ DEPTS LD
Sbjct: 128 DGVVENALRSAALWDETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ A + + N+ TIV H
Sbjct: 187 PISTARIEDLIMNL-KKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 55/247 (22%), Positives = 100/247 (40%), Gaps = 55/247 (22%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVSGKITYNGHGFKE 204
+L D++ I P + +L GP SGKTTLL L G L G L+V G+ G KE
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLL-TLIGGLRSVQEGS-LKVLGQ-ELYGASEKE 76
Query: 205 FVPPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
V R + Y+ Q + +T R Q V ++ L+ +E
Sbjct: 77 LVQLRRNIGYIFQAHNLLGFLTAR---------QNVQMALELQPNLSYQEARE------- 120
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK---GISGGQKKRLTTGEL 320
+++ +GL GD + +SGGQK+R+
Sbjct: 121 -----------------RARAMLEAVGL--------GDHLDYYPHNLSGGQKQRVAIARA 155
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380
LV +++ DE + LDS + +++ ++ A + I ++ ++ D ++
Sbjct: 156 LVHRPKLVLADEPTAALDSKSGRDVVELMQ--KLAREQGCTILIVTHDNRILDVADRIVH 213
Query: 381 LSEGQIV 387
+ +G+++
Sbjct: 214 MEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 47/240 (19%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+D+S I L ++LGP GKTTLL +AG + G I NG + P
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGRRIEG--PGA 74
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
V Q + + + V + + F Q + GI+ + +I +
Sbjct: 75 ERGVVFQNEALLPWLNVIDNVAFGLQ-------------------LRGIEKAQRREIAHQ 115
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
AL +GL + + +SGG ++R+ L ++L
Sbjct: 116 MLAL---------------VGL---EGA--EHKYIWQLSGGMRQRVGIARALAVEPQLLL 155
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQIV 387
+DE LD+ T Q+ + L + G V+ + EA L +++LS G++V
Sbjct: 156 LDEPFGALDALTREQMQELLLDLWQE-TGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214
|
Length = 259 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 1e-04
Identities = 63/270 (23%), Positives = 106/270 (39%), Gaps = 61/270 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
T L D+S ++ LLGP GKTTLL +AG Q +G I G +PP
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGL---ERQTAGTIYQGGRDIT-RLPP 73
Query: 209 RTSAY--VSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ Y V Q +TV + + + + +G+G E+A R
Sbjct: 74 QKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRA-----EVAER-------------- 114
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
V ++ ++GL G +SGGQ++R+ L
Sbjct: 115 ---------------VAELLDLVGLPGSERKYPGQ-----LSGGQQQRVALARALATSPG 154
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVILLSE 383
+L +DE + LD+ ++ ++L+ R L G T I + EA + D +++++
Sbjct: 155 LLLLDEPLSALDA----RVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNH 210
Query: 384 GQI--------VYQGPRVS-VLDFFASMGF 404
G I +Y+ P V DF + +
Sbjct: 211 GVIEQVGTPQEIYRHPATPFVADFVGEVNW 240
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 56/243 (23%), Positives = 96/243 (39%), Gaps = 53/243 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+D++ + L ++LGP GKTTLL +AG + + G IT +G + P
Sbjct: 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGA 70
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
V Q + + V++ + F Q GV +R +IA
Sbjct: 71 ERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEK--------MQRLEIAH------------ 110
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K +GL+ + +SGGQ++R+ L ++L
Sbjct: 111 --------------QMLKKVGLEG-----AEKRYIWQLSGGQRQRVGIARALAANPQLLL 151
Query: 330 MDEISNGLDSSTTYQIIKYLK---HSTRALDGTTVISLLQPAPEAYELFDDVILLS--EG 384
+DE LD+ T Q+ L T G V+ + EA + +++LLS G
Sbjct: 152 LDEPFGALDAFTREQMQTLLLKLWQET----GKQVLLITHDIEEAVFMATELVLLSPGPG 207
Query: 385 QIV 387
++V
Sbjct: 208 RVV 210
|
Length = 255 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 10/98 (10%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT + + + + SGG+++RL +L+ A ++ +DE + GLD T Q++ +
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI---FEV 144
Query: 356 LDGTTVISL---LQPAPEAYELFDDVILLSEGQIVYQG 390
L T+I + L E D ++ L G+I+ QG
Sbjct: 145 LKDKTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 1e-04
Identities = 62/260 (23%), Positives = 105/260 (40%), Gaps = 51/260 (19%)
Query: 163 LTLLLGPPSSGKTTLLLALAGRLG---HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 219
LT L+GP GK+T L L R+ +++++G+I + G Y S+ D
Sbjct: 32 LTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGSKMDL 80
Query: 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 279
+ +R+ + Q Q + + +A KIAG+K E +D
Sbjct: 81 ----VELRKEVGMVFQ-QPTPFPFSVYDNVAYGLKIAGVKDKELID-------------Q 122
Query: 280 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD- 338
V E + + D L D + SGGQ++R+ L +V+ +DE ++ LD
Sbjct: 123 RVEESLKQAAIWKETKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDP 180
Query: 339 --SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
SS + + LKH T I + +A + D L G ++ GP +
Sbjct: 181 ISSSEIEETLMELKHQ------YTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM- 233
Query: 397 DFFASMGFSCPKRKNVADFL 416
F PK++ +D+L
Sbjct: 234 -------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 44/236 (18%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQV--SGKITYNGHGFKEFV 206
ILDDL+ I ++ ++G SGK+TLL + L+ SG++ NG +
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIG-----LLEKFDSGQVYLNG----QET 62
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
PP S S+ RE L + Q + +I E + +E+LD+
Sbjct: 63 PPLNSKKASK--------FRREKLGYLFQ------NFALIEN----ETV-----EENLDL 99
Query: 267 FMKSFAL-GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
+K L +K E + K +GL+ + + +SGG+++R+ ++ P
Sbjct: 100 GLKYKKLSKKEKREKKKEALEK-VGLNLKLKQKIYE-----LSGGEQQRVALARAILKPP 153
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
++ DE + LD +++ L G T+I ++ PE + D VI L
Sbjct: 154 PLILADEPTGSLDPKNRDEVLDLLLELNDE--GKTII-IVTHDPEVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-04
Identities = 63/251 (25%), Positives = 103/251 (41%), Gaps = 59/251 (23%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTL--LLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
++++ S ++P + L+G SGK+T+ L+A G + SG+I ++G +E
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVA-----GLYQPWSGEILFDGIPREEIPR 548
Query: 208 PRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
+ V+ QD + E TVR+ L + +D PD DL
Sbjct: 549 EVLANSVAMVDQDIFLFEGTVRDNL----------TLWD------------PTIPDADLV 586
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
K A+ TS Y D + E +SGGQ++RL LV
Sbjct: 587 RACKDAAIHDVITSRPGGY-----------DAELA-EGGANLSGGQRQRLEIARALVRNP 634
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-----FDDVIL 380
+L +DE ++ LD T I L+ G T I + A+ L D++I+
Sbjct: 635 SILILDEATSALDPETEKIIDDNLRRR-----GCTCIIV------AHRLSTIRDCDEIIV 683
Query: 381 LSEGQIVYQGP 391
L G++V +G
Sbjct: 684 LERGKVVQRGT 694
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 26/220 (11%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGD------IYISGYPKRQE 898
L +++ + G TAL+G +G+GK+T+ + G++ D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 899 TFARIS---GYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
T I G QN D G TV + + F R E+ V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIK---IVRDVLADVGML 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
+ P LS Q++R+ IA L P I+ +DE TS LD +++ +R +
Sbjct: 135 DYIDSE---PA--NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 1015 VN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H ID D++L + G L P
Sbjct: 190 KKKNNLTVISITH--DIDEANMADQVLVLDDGKLLAQGSP 227
|
Length = 282 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-04
Identities = 62/258 (24%), Positives = 104/258 (40%), Gaps = 63/258 (24%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
R LD L+ +RP L+GP +GK+TL L L + SG+I +G ++
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLL---LRFYDPQSGRILLDGVDLRQ 406
Query: 205 FVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P R + QD + +V E + + G D E A R A
Sbjct: 407 LDPAELRARMALVPQDPVLFAASVMENIRY-----GRPDATDEEVEAAARAAHA------ 455
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
F I L DT +G E +SGGQ++R+ ++
Sbjct: 456 --HEF--------------------ISALPEGYDTYLG-ERGVTLSGGQRQRIAIARAIL 492
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG-----TTVI-----SLLQPAPEAY 372
A +L +DE ++ LD+ + Q+++ +AL+ TT+I + + A
Sbjct: 493 KDAPILLLDEATSALDAESE-QLVQ------QALETLMKGRTTLIIAHRLATVLKA---- 541
Query: 373 ELFDDVILLSEGQIVYQG 390
D ++++ +G+IV QG
Sbjct: 542 ---DRIVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 2e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (106), Expect = 2e-04
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++ L L VL +DE ++ LD +TT +I ++++ D TVI +
Sbjct: 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA---DRLTVIIVTH 220
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D L +G++V +GP + FS PK A ++
Sbjct: 221 NLAQAARISDRAALFFDGRLVEEGPTEQL--------FSSPKHAETARYV 262
|
Length = 276 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (105), Expect = 2e-04
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 23/241 (9%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAG-RKTGGIIEGDIYISGYPK 895
+L V+ F +T+L+G +G+GKTT + D ++G R +G ++ G I Y
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-T 954
E F R G Q P +++++++L A +R + + R + + V L
Sbjct: 96 VLE-FRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWD 151
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++ L P LS Q++ L +A L NP ++ +DEPTS LD + +R++
Sbjct: 152 AVKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL-----GSKSCELIKYFEAVE 1069
+ I+ T + L F G L+ GP K E +Y +
Sbjct: 210 ADRLTVIIVTHNLAQAARISDRAALFF---DGRLVEEGPTEQLFSSPKHAETARYVAGLS 266
Query: 1070 G 1070
G
Sbjct: 267 G 267
|
Length = 276 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-04
Identities = 54/188 (28%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
LL +V+ + G LT ++G +G+GK+TL+ L + I EG ++ + + A +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE--ISEGRVWA------ERSIAYV 726
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGAL-- 960
+Q I + TV ++LF + E + A V +L +L L G L
Sbjct: 727 P---QQAWIMNA--TVRGNILFF-------DEEDAARLADAVRVSQLEADLAQLGGGLET 774
Query: 961 -IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
IG G+N LS Q+ R+++A + AN + +D+P S LDA V+ G+
Sbjct: 775 EIGEKGVN-LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 1020 TIVCTIHQ 1027
T V HQ
Sbjct: 834 TRVLATHQ 841
|
Length = 1560 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 49/236 (20%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQET 899
Q L N+ +TAL+G SG GK+T + + + G EG+I + +P
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HP----- 82
Query: 900 FARISGYCEQNDIHSPGLTVLE-----SLLFSAWLRLPSEIELET----------QRAFV 944
+ +I SP + +E S++F P I +R+ +
Sbjct: 83 --------DNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 945 EEVMELVELTSLSGALI--------GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
EE +E +L A + G N LS Q++RL IA L +P I+ DEPT
Sbjct: 135 EERVE----NALRNAALWDEVKDRLGDLAFN-LSGGQQQRLCIARALATDPEILLFDEPT 189
Query: 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
S LD A A + + ++ N ++ T + + ++M GELI G
Sbjct: 190 SALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYM---GELIEFG 242
|
Length = 265 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 2e-04
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G L A+VG G GK++L+ L +EG +++ G A I QND
Sbjct: 664 GALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVHMKGSVAYVPQQAWI-----QND--- 713
Query: 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA---LIGLPGINGLST 971
++ E++LF L + +E L +L L IG G+N LS
Sbjct: 714 ---SLRENILFGKALNEKY------YQQVLEACALLPDLEILPSGDRTEIGEKGVN-LSG 763
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
Q++R+++A + +N I D+P S +DA
Sbjct: 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 58/213 (27%), Positives = 92/213 (43%), Gaps = 27/213 (12%)
Query: 856 VLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQETFARIS-----GYC 907
+ AL+G SG GK+TL+ + L +EG++ + G I G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 908 EQNDIHSPGLTVLESLLFSAWLR--LPSEIELETQRAFVEEVMELVEL-TSLSGALIGLP 964
Q P LT+ +++ L + S+ EL+ + VE ++ L + L P
Sbjct: 91 FQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDER---VEWALKKAALWDEVKDRLNDYP 147
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
LS QR+RL IA L P I+ MDEPT+ +D A + + + TIV
Sbjct: 148 S--NLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL-KKEYTIVLV 204
Query: 1025 IHQPS----IDIFESFDELLFMKRGGELIYAGP 1053
H P+ + + +F L++ G+LI GP
Sbjct: 205 THSPAQAARVSDYVAF---LYL---GKLIEVGP 231
|
Length = 253 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 2e-04
Identities = 22/62 (35%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQ 1027
LS Q++R++IA ++ NP I+ +DE TS LD ++ +V +T+ N+ N R + H+
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHR 639
Query: 1028 PS 1029
S
Sbjct: 640 LS 641
|
Length = 1466 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 2e-04
Identities = 59/224 (26%), Positives = 98/224 (43%), Gaps = 29/224 (12%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVL--------AGRKTGGII---EGDIY-IS 891
+L ++T + ++G SG+GK+TL+ VL + K G + DI+ I
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLF---SAWLRLPSEIELETQRAFVEEVM 948
R+E G Q P L++ +++ + S ++ EI + VEE +
Sbjct: 85 AIKLRKEV-----GMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREI-----KKIVEECL 134
Query: 949 ELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
V L + P + LS Q++RLTIA L P ++ MDEPTS +D + +
Sbjct: 135 RKVGLWKEVYDRLNSPA-SQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
+ + + N IV H P + D + F+ GEL+ G
Sbjct: 194 KLITELKNE-IAIVIVSHNPQ-QVARVADYVAFL-YNGELVEWG 234
|
Length = 257 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-04
Identities = 49/180 (27%), Positives = 83/180 (46%), Gaps = 36/180 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
+ +L ++ + G AL+G +G GK+TL+ +L + +G+I ++G P
Sbjct: 350 DQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT--RAWDPQQGEILLNGQP---- 403
Query: 899 TFARISGYCEQNDIHSPGLTVLESL--LFSAWLR------LPSEIELETQRAFVEEVMEL 950
I+ Y E + ++V+ LFSA LR P+ + + EV++
Sbjct: 404 ----IADYSEAALRQA--ISVVSQRVHLFSATLRDNLLLAAPNASDEA-----LIEVLQQ 452
Query: 951 VELTSLSGALIGLPGING--------LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
V L L L G+N LS +++RL IA L+ + ++ +DEPT GLDA
Sbjct: 453 VGLEKL---LEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-04
Identities = 47/182 (25%), Positives = 80/182 (43%), Gaps = 24/182 (13%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGY----CE 908
G + AL+G +GAGK+TLM ++AG G + I G P + T A+
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDS--GTLEIGGNPCARLTPAKAHQLGIYLVP 92
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL---VELTSLSGALIGLPG 965
Q + P L+V E++LF LP + + + + L ++L S +G+
Sbjct: 93 QEPLLFPNLSVKENILF----GLPK--RQASMQKMKQLLAALGCQLDLDSSAGS------ 140
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
L R+ + I L+ + I+ +DEPT+ L + +R ++ G IV
Sbjct: 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFIS 197
Query: 1026 HQ 1027
H+
Sbjct: 198 HK 199
|
Length = 510 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 3e-04
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-04
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--YPKRQETFARISG--YCE 908
R G + + G+ GAG+T L L G + G+I + G R A +G Y
Sbjct: 283 RAGEILGIAGLVGAGRTELARALFGAR--PASSGEILLDGKPVRIRSPRDAIKAGIAYVP 340
Query: 909 QNDIHS----PGLTVLESLLFSAWLRLPSE--IELETQRAFVEEVMELVEL-TSLSGALI 961
D S +++ E++ ++ R I+ +RA E + + + T I
Sbjct: 341 -EDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI 399
Query: 962 G-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
G L G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + G+
Sbjct: 400 GTLSGGN-----QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKA 453
Query: 1021 IV 1022
I+
Sbjct: 454 IL 455
|
Length = 500 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 4e-04
Identities = 52/212 (24%), Positives = 85/212 (40%), Gaps = 44/212 (20%)
Query: 129 NMTEAL-LRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
N T+ L L +L ++Y G S +D L +RP LLG +GKTT L G
Sbjct: 1933 NKTDILRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTG--- 1987
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
V+ D VA ++ + Q G ++D I
Sbjct: 1988 ------------------------DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAI 2023
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+L + E L ++ + + ++ V + ++ LGL AD L G
Sbjct: 2024 DDL--------LTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGT----- 2070
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
SGG K++L+T L+G ++ +DE + G+D
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 65/277 (23%)
Query: 127 IFNMTEALLRQLR-IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
+++ L+ L+ +++ ++ L +S I + +GP +GKTT L L+G L
Sbjct: 12 VYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL 71
Query: 186 GHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQ------QDWQVA-EMTVRETLDFAGQCQ 237
SG++ G VP R ++ + Q Q+ ++ V ++
Sbjct: 72 ---QPTSGEVRVAG-----LVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYL----- 118
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
LA I + P F K LD ++
Sbjct: 119 -----------LAA---IYDLPPAR----FKKR--------------------LDELSEL 140
Query: 298 L-VGDEM---LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353
L + + + ++ +S GQ+ R L+ +LF+DE + GLD I +LK
Sbjct: 141 LDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYN 200
Query: 354 RALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
R GTTV+ + L V+++ +G+++Y G
Sbjct: 201 R-ERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 64/299 (21%), Positives = 118/299 (39%), Gaps = 55/299 (18%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M ++G + L+ LS I ++G +GK+TLL A+AG L
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL---K 57
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQ--QDWQV---AEMTVRETLDFAGQCQGVGSKYD 244
SG+I +G + + + +++ QD E+T+ E L A
Sbjct: 58 PTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALA----------- 106
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI-LGLDTCADTLVGDEM 303
R K G+ S AL ++ S E + ++ LGL + + D +
Sbjct: 107 -----ESRGKKRGL-----------SSALNERRRSSFRERLARLGLGL----ENRLSDRI 146
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI- 362
+SGGQ++ L+ + P ++L +DE + LD T +++ TT++
Sbjct: 147 GL-LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMV 205
Query: 363 --SLLQPAPEAYELFDDVILLSEGQIVY-----QGPRVSVLDFFASMGFSCPKRKNVAD 414
++ A + + +I+L G+IV + ++VLD F + + D
Sbjct: 206 THNMED----ALDYGNRLIMLHSGKIVLDVTGEEKASLTVLDLIQM--FEKIRGATLDD 258
|
Length = 263 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 49/268 (18%)
Query: 130 MTEALLR----QLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
MTE++ R QL + G T+ ++L+ I T ++GP GK+TLL L+ RL
Sbjct: 1 MTESVARLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLS-RL 56
Query: 186 GHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
G + +G + + R ++Q ++TV+E + +G
Sbjct: 57 --MTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV-----ARGRYPH 109
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+ T R+E DE+ V M+ G+ T + D+
Sbjct: 110 QPLFTRW-RKE-------DEE-----------------AVTKAMQATGI-----THLADQ 139
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SGGQ++R +L ++ +DE + LD S +++ L R G T+
Sbjct: 140 SVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNRE-KGYTLA 198
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQG 390
++L +A +I L EG+IV QG
Sbjct: 199 AVLHDLNQACRYASHLIALREGKIVAQG 226
|
Length = 265 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ +A L P + DEPT+GLD + ++ N+ G+TI+ H
Sbjct: 165 ELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTH- 223
Query: 1028 PSID-IFESFDELLFMKRGGELIYAG 1052
+D + E +F K G++I G
Sbjct: 224 -DLDNVLEWTKRTIFFKD-GKIIKDG 247
|
Length = 305 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 4e-04
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI-HQ 1027
LS +++RL A L+ P VF+DE TS LD + + + ++ V ++ H+
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ----LLKELGITVISVGHR 147
Query: 1028 PSIDIFESFDELLFMKRGG 1046
PS+ F D +L + G
Sbjct: 148 PSLWKF--HDRVLDLDGEG 164
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 4e-04
Identities = 38/202 (18%), Positives = 60/202 (29%), Gaps = 65/202 (32%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH 913
PG + +VG G+GKTTL LA I G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ 973
E LE + ++ + S SG L
Sbjct: 39 --------------------EDILEEVLDQLLLIIVGGKKASGSGELR-----------L 67
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN------TGRTIVCTIHQ 1027
R L +A +L P ++ +DE TS LDA A+++ + T++ T +
Sbjct: 68 RLALALARKL--KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 1028 PSI----DIFESFDELLFMKRG 1045
+ FD + +
Sbjct: 126 EKDLGPALLRRRFDRRIVLLLI 147
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 66/284 (23%), Positives = 111/284 (39%), Gaps = 44/284 (15%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+R + NR+K +L DL+ I+ +++T +GP GK+T L L Q++
Sbjct: 83 IRNFNFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLN-------QLNDL 134
Query: 195 ITYNGH-GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253
I H G F+ T + + E+ R + F S +D + R
Sbjct: 135 IEGTSHEGEIYFLGTNTRS----KKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNN 190
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQK 312
I D I K +VE +K L D D L D+ +SGGQ+
Sbjct: 191 GI------NDRKILEK-----------IVEKSLKSAALWDEVKDDL--DKAGNALSGGQQ 231
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+RL + VL MDE ++ LD T +I + + + ++I + +A
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKY---SIIIVTHSMAQAQ 288
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ D+ + +G I G ++ F PK K D++
Sbjct: 289 RISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 4e-04
Identities = 50/179 (27%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 857 LTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI- 912
+TA +G SG GK+T + + L G EG+IY G R + + + +
Sbjct: 110 VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVF 169
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965
P T E +F P + R +E++ VE + S AL + G
Sbjct: 170 QKP--TPFEMSIFDNVAYGPRNNGI-NDRKILEKI---VEKSLKSAALWDEVKDDLDKAG 223
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
N LS Q++RL IA + P ++ MDEPTS LD A A + + + I+ T
Sbjct: 224 -NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVT 281
|
Length = 329 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 46/199 (23%), Positives = 78/199 (39%), Gaps = 44/199 (22%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI----IE 885
+E + V Q L +V+ +TA++G SG GK+T + + R I +E
Sbjct: 40 IEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCI-NRMNDLIDAARVE 98
Query: 886 GDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI--------EL 937
G++ G + + D+ L ++F P I ++
Sbjct: 99 GELTFRG----KNVY--------DADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKI 146
Query: 938 ETQRAFVEEVMELVELTSLSGALI-----------GLPGINGLSTEQRKRLTIAVELVAN 986
+ ++E +E SL A + GL LS Q++RL IA + +
Sbjct: 147 QGYDGDIDERVE----ESLRRAALWDEVKDQLDSSGL----DLSGGQQQRLCIARAIAPD 198
Query: 987 PSIVFMDEPTSGLDARAAA 1005
P ++ MDEP S LD A +
Sbjct: 199 PEVILMDEPASALDPVATS 217
|
Length = 285 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 36/188 (19%)
Query: 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC--EQNDIHS 914
+TAL+G SG GK+T + L + ++EG +I G E +I+S
Sbjct: 35 ITALIGPSGCGKSTFLRTL--NRMNDLVEG--------------IKIEGNVIYEGKNIYS 78
Query: 915 PGLTVLE-------------SLLFSAWLRL---PSEIELETQRAFVEEVMELVELTSLSG 958
+LE L S + + P + ++ E V + ++ ++L
Sbjct: 79 NNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWN 138
Query: 959 ALIGLPGINGLSTE--QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+ N LS Q++RL IA L P+++ MDEPTS LD + + + N+
Sbjct: 139 EVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE 198
Query: 1017 TGRTIVCT 1024
+ I+ T
Sbjct: 199 SYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+S GQKKR+ LV AR L +DE + GLD + Q+I ++ G VI
Sbjct: 137 LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI--VAQGNHVIISSH 194
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
YE+ D V +L +GQI+ G
Sbjct: 195 DIDLIYEISDAVYVLRQGQILTHG 218
|
Length = 271 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 58/258 (22%), Positives = 100/258 (38%), Gaps = 52/258 (20%)
Query: 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF 205
K L +S ++ ++GP SGK+TL + +G SG + +G K++
Sbjct: 329 GKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLKQW 385
Query: 206 VPP---RTSAYVSQQ----DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
+ Y+ Q VAE R + + I E A K+AG+
Sbjct: 386 DRETFGKHIGYLPQDVELFPGTVAENIARFGENADPE---------KIIEAA---KLAGV 433
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+L IL L DT++G +SGGQ++R+
Sbjct: 434 ---HEL-----------------------ILRLPDGYDTVIGPGG-ATLSGGQRQRIALA 466
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
L G +++ +DE ++ LD + +K +A T V+ +P+ D +
Sbjct: 467 RALYGDPKLVVLDEPNSNLDEEGEQALANAIKA-LKARGITVVVITHRPS--LLGCVDKI 523
Query: 379 ILLSEGQIVYQGPRVSVL 396
++L +G+I G R VL
Sbjct: 524 LVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 70/265 (26%), Positives = 110/265 (41%), Gaps = 40/265 (15%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M + +R L++ G + +LD ++ I + +T L+GP SGK+TLL RL
Sbjct: 1 MNKIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRL---- 52
Query: 190 QVSGKITYNGHGFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
+ + R S Y+ QD + +M V E + Q V + I
Sbjct: 53 ------------IELYPEARVSGEVYLDGQD--IFKMDVIE---LRRRVQMVFQIPNPIP 95
Query: 248 ELARREKIA-GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
L+ E +A G+K L+ +KS ++ +E K D D L D
Sbjct: 96 NLSIFENVALGLK----LNRLVKSKKELQERVRWALE---KAQLWDEVKDRL--DAPAGK 146
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++RL L VL DE + LD T +I + + T++ +
Sbjct: 147 LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDM---TIVLVTH 203
Query: 367 PAPEAYELFDDVILLSEGQIVYQGP 391
+A + D V L +GQIV GP
Sbjct: 204 FPQQAARISDYVAFLYKGQIVEWGP 228
|
Length = 250 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 5e-04
Identities = 46/189 (24%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI--IEGDIYISGYP-KRQET 899
Q L ++ +TAL+G SG GK+T + R I I+G + I G K Q+
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCF-NRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 900 FA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-LETQRAFVEEVMELVELTS 955
A + +Q ++ ++ E++ ++ +L I+ + + A V + ++ V L
Sbjct: 75 VALRKNVGMVFQQPNVFVK--SIYENISYAP--KLHGMIKNKDEEEALVVDCLQKVGLFE 130
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+ + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++ +
Sbjct: 131 EVKDKLKQNAL-ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS 189
Query: 1016 NTGRTIVCT 1024
+ I+ T
Sbjct: 190 HNLSMIMVT 198
|
Length = 246 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 34/211 (16%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE---GDIYISGYPKRQETFARISGYCE 908
PG + ALVG +GAGK+T+M VL G + G I ++ +G QE A I
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 909 QNDIHS-----PGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
IH P LT+ E++ + + R I+ + A ++++ + L S
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGR----IDWKKMYAEADKLLARLNLRFSSD 136
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
L+G LS +++ + IA L ++ MDEPT L + R +R + + G
Sbjct: 137 KLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
R IV H+ +IFE D++ R G+ I
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVF-RDGQFI 220
|
Length = 501 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 5e-04
Identities = 57/207 (27%), Positives = 98/207 (47%), Gaps = 17/207 (8%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G ALVG SG+GK+T+ ++L + I EG+I + G+ R T A +
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLT--RFYDIDEGEILLDGHDLRDYTLASLR 416
Query: 905 GYC---EQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGAL 960
QN +H T+ ++ ++ + +IE + A+ M+ + + L
Sbjct: 417 NQVALVSQN-VHLFNDTIANNIAYARTEQYSREQIEEAARMAYA---MDFIN--KMDNGL 470
Query: 961 IGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + +
Sbjct: 471 DTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DELQKN 529
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRG 1045
RT + H+ S E DE+L ++ G
Sbjct: 530 RTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 5e-04
Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 28/165 (16%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG---YPKRQET--FARI 903
F +TAL+G SG GK+T + L G I G++ + G Y ++ +
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLR-------LPSEIELETQRAFV-EEVMELVELTS 955
G Q P ++ E++++ L L +E ++A + +EV + + ++
Sbjct: 88 VGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESA 146
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
LS LS Q++R+ IA L P ++ +DEPTS LD
Sbjct: 147 LS-----------LSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 5e-04
Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 9/185 (4%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG----YCE 908
RPG + A++G +G+GK+TL LAGR+ + G + G + + +G
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAF 84
Query: 909 QNDIHSPGLT---VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
Q + PG++ L++ L + +R E + F + + E + L + L+
Sbjct: 85 QYPVEIPGVSNQFFLQTALNA--VRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV 142
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
G S ++KR I V P + +DE SGLD A IV V ++ + R+ +
Sbjct: 143 NVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVT 202
Query: 1026 HQPSI 1030
H I
Sbjct: 203 HYQRI 207
|
Length = 248 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 61/254 (24%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I+P ++GP +GKTTL+ L G+I +G ++ R
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRDI--SR 72
Query: 210 TS-----AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
S V Q + + T+ E + + + + E A K AG
Sbjct: 73 KSLRSMIGVVLQDTF-LFSGTIMENIRLGRP----NATDEEVIEAA---KEAGAH----- 119
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGP 324
++IMK L DT++G+ +S G+++ L ++
Sbjct: 120 ------------------DFIMK---LPNGYDTVLGENG-GNLSQGERQLLAIARAMLRD 157
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDV 378
++L +DE ++ +D+ T I + L+ + + G T I S ++ A D +
Sbjct: 158 PKILILDEATSNIDTETEKLIQEALE---KLMKGRTSIIIAHRLSTIKNA-------DKI 207
Query: 379 ILLSEGQIVYQGPR 392
++L +G+I+ +G
Sbjct: 208 LVLDDGKIIEEGTH 221
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 32/97 (32%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D++ + SGG ++RL LV R++FMDE + GLD S +++ L+ R L G
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVREL-GLA 204
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
V+ + A L D ++++ +GQ+V G VLD
Sbjct: 205 VVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 6e-04
Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 21/190 (11%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG--------YPKRQE 898
+++ + G + G+ G+G+T LM+ L G G+I ++G ++
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFG--VDKRAGGEIRLNGKDISPRSPLDAVKK 338
Query: 899 TFARIS------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
A I+ G+ I + + + SL + ++ E EL+
Sbjct: 339 GMAYITESRRDNGFFPNFSI-AQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLA 397
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L S I LS ++++ I+ L P ++ DEPT G+D A A + + +R
Sbjct: 398 LKCHSVN----QNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1013 NIVNTGRTIV 1022
+ + G+ I+
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 6e-04
Identities = 62/242 (25%), Positives = 101/242 (41%), Gaps = 43/242 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L++++ I + +T L+GP GK+T L L L +++ G + Y G
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKN------- 75
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD-IF 267
+ ++ + E+ + + F + S YD I+ KI G K + LD I
Sbjct: 76 -----IYSNNFDILELRRKIGMVFQTPNPFLMSIYDNIS---YGPKIHGTKDKKKLDEIV 127
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+S +K++L E K L+T A +L SGGQ++RL L V
Sbjct: 128 EQSL----KKSALWNEVKDK---LNTNALSL---------SGGQQQRLCIARTLAIEPNV 171
Query: 328 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+ MDE ++ LD +T +I I LK S T+I + +A + D G
Sbjct: 172 ILMDEPTSALDPISTGKIEELIINLKES------YTIIIVTHNMQQAGRISDRTAFFLNG 225
Query: 385 QI 386
I
Sbjct: 226 CI 227
|
Length = 254 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 6e-04
Identities = 40/182 (21%), Positives = 70/182 (38%), Gaps = 59/182 (32%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--------FARIS 904
R G + + G+ G G+T L + L G + G+I + G P + + A +
Sbjct: 24 RAGEIVGIAGLVGNGQTELAEALFGLRP--PASGEITLDGKPVTRRSPRDAIRAGIAYVP 81
Query: 905 GYCEQNDIHS----PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
D L+V E++ S+ L SG
Sbjct: 82 E-----DRKREGLVLDLSVAENIALSSLL---------------------------SG-- 107
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
G N Q+K + +A L +P ++ +DEPT G+D A A + R +R + + G+
Sbjct: 108 ----G-N-----QQK-VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKA 156
Query: 1021 IV 1022
++
Sbjct: 157 VL 158
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 6e-04
Identities = 54/194 (27%), Positives = 80/194 (41%), Gaps = 24/194 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQET 899
Q L VT RPG + L G SGAGK+TL+ ++ G + G I I+ R+
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
F R D H LL + I L A +++ V S A
Sbjct: 76 FLRRQIGMIFQDHH---------LLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAA 121
Query: 960 L--IGL--PGIN---GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L +GL N LS +++R+ IA +V P+++ DEPT LD + ++R
Sbjct: 122 LDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFE 181
Query: 1013 NIVNTGRTIVCTIH 1026
G T++ H
Sbjct: 182 EFNRVGVTVLMATH 195
|
Length = 222 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 7e-04
Identities = 62/291 (21%), Positives = 115/291 (39%), Gaps = 51/291 (17%)
Query: 131 TEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL- 189
+ L QL ++ G + D+S + +T ++GP GK+T+L ++ R+ H L
Sbjct: 3 NKVKLEQLNVHFGKNHAVK---DVSMDFPENSVTAIIGPSGCGKSTVLRSI-NRM-HDLV 57
Query: 190 ---QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
+V+GKI + T Y D V +++R + Q +
Sbjct: 58 PSARVTGKILLDD----------TDIY----DRGVDPVSIRRRVGMVFQKPNPFPAMSIY 103
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLK 305
+ K+ G + D +VE +K + L D D L + M
Sbjct: 104 DNVIAGYKLNGRVNRSEAD--------------EIVESSLKRVALWDEVKDRLKSNAME- 148
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
+SGGQ++RL + V+ MDE ++ LD +T +I + ++ + T+I +
Sbjct: 149 -LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELK---EKYTIIIVT 204
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+A + D G +V G + F+ P++K D++
Sbjct: 205 HNMQQAARVSDYTAFFYMGDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 7e-04
Identities = 49/190 (25%), Positives = 69/190 (36%), Gaps = 56/190 (29%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISG-- 892
E ++ L V+ G A+VG SG GK+TL +L +IE G++Y G
Sbjct: 25 ERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLT------MIETPTGGELYYQGQD 78
Query: 893 ---YPKRQETFARI-------SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
+ R + Y N G + E LL + L S E +R
Sbjct: 79 LLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL---SAAE---RRE 132
Query: 943 FVEEVMELVELTSLSGALIGLPGINGLSTE------------QRKRLTIAVELVANPSIV 990
+M V GL E QR+R+ IA L+ +P +V
Sbjct: 133 KALAMMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVV 176
Query: 991 FMDEPTSGLD 1000
DEP S LD
Sbjct: 177 VADEPVSALD 186
|
Length = 327 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 7e-04
Identities = 46/165 (27%), Positives = 74/165 (44%), Gaps = 34/165 (20%)
Query: 860 LVGVSGAGKTTLMDVLAGRKT--GG--IIEGDIYISGY---PKRQET---FARIS-GYCE 908
LVG +GAGK+TLM +L G G I E D+ ++ P R + ++ G E
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 909 QNDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSG------ 958
Q + L+ + L PSE L + A ++E ++ L L
Sbjct: 94 QAE-------YLKR--YHDISHLVETDPSEKNLN-ELAKLQEQLDHHNLWQLENRINEVL 143
Query: 959 ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
A +GL ++ LS ++ + LV+NP ++ +DEPT+ LD
Sbjct: 144 AQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 8e-04
Identities = 42/197 (21%), Positives = 75/197 (38%), Gaps = 48/197 (24%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARIS-----GY 906
R G + + GV+G G++ L++ ++G RK G I ++G R Y
Sbjct: 282 RAGEIVGIAGVAGNGQSELVEAISGLRKP---ASGRILLNGKDVLGRLSPRERRRLGLAY 338
Query: 907 CEQNDIH---SPGLTVLESLL--------FSAWLRL-PSEIELETQRAFVEEVME----- 949
++ L++ E+L+ FS L I R F E++E
Sbjct: 339 VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAI-----RKFARELIEEFDVR 393
Query: 950 ----LVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
SLSG +++L +A EL P ++ +PT GLD A
Sbjct: 394 APSPDAPARSLSGG-------------NQQKLILARELARRPDLLIAAQPTRGLDVGAIE 440
Query: 1006 IVMRTVRNIVNTGRTIV 1022
+ + + + G+ ++
Sbjct: 441 FIHERLLELRDAGKAVL 457
|
Length = 501 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 54/228 (23%), Positives = 95/228 (41%), Gaps = 56/228 (24%)
Query: 172 SGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRE 228
SGK++LLLAL RL SG I +G + + R+ + QD + T+R
Sbjct: 41 SGKSSLLLALF-RLVE--LSSGSILIDGVDISK-IGLHDLRSRISIIPQDPVLFSGTIRS 96
Query: 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKI 288
LD G+ DE+L AL + + E++ +
Sbjct: 97 NLDPFGEY-----------------------SDEELWQ-----AL---ERVGLKEFVESL 125
Query: 289 LGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY 348
G DT+V +E + +S GQ++ L L+ +++L +DE + +D T I K
Sbjct: 126 PGGL---DTVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKT 181
Query: 349 LKHSTRALDGTTVISLLQPAPEAYEL-----FDDVILLSEGQIVYQGP 391
++ A TV+++ A+ L D +++L +G++V
Sbjct: 182 IRE---AFKDCTVLTI------AHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 8e-04
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 59/232 (25%)
Query: 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND 911
F LTAL+G SG GK+T + L + IE +I I+G K E +
Sbjct: 27 FEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIK-----------FEGQN 72
Query: 912 IHSPGLTVLE-----SLLFSAWLRLPSEI----------------ELETQRAFVEEVMEL 950
I+ + ++E ++F P + EL QR VEE
Sbjct: 73 IYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQR--VEE---- 126
Query: 951 VELTSLSGALIGLPGINGL-------STEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
SL A I + L S Q++R+ IA L P +V +DEPTS LD +
Sbjct: 127 ----SLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPIS 182
Query: 1004 AAIVMRTVRNIVNTGRTIVCT--IHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ + T+ + + I+ T + Q D+ F+ G+LI AGP
Sbjct: 183 SSEIEETLMELKHQYTFIMVTHNLQQAG----RISDQTAFLM-NGDLIEAGP 229
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-04
Identities = 61/242 (25%), Positives = 94/242 (38%), Gaps = 55/242 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L D++ I L ++G GKT+L+ A+ G L H S I +
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIR------------GS 680
Query: 211 SAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK-IAGIKPDEDLDIFMK 269
AYV Q W + TVRE + F GS + E R + I DLD+
Sbjct: 681 VAYVPQVSW-IFNATVRENILF-------GSDF----ESERYWRAIDVTALQHDLDLLP- 727
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
G D T +G+ + ISGGQK+R++ + + +
Sbjct: 728 --------------------GRDL---TEIGERGVN-ISGGQKQRVSMARAVYSNSDIYI 763
Query: 330 MDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388
D+ + LD+ +Q+ +K + V + L P L D +IL+SEG I
Sbjct: 764 FDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP----LMDRIILVSEGMIKE 819
Query: 389 QG 390
+G
Sbjct: 820 EG 821
|
Length = 1495 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 9e-04
Identities = 53/242 (21%), Positives = 89/242 (36%), Gaps = 52/242 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
IL+++S +R + GP GK+TLL +A + SG + + G P
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEA 74
Query: 209 --RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
+ +Y +Q + TV + L F Q I +PD +
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFPWQ-------------------IRNRRPDRAAAL 114
Query: 267 -FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELLVGP 324
+ FAL + I+ + + +SGG+K+R+ L P
Sbjct: 115 DLLARFALP--------DSIL--------------TKNITELSGGEKQRIALIRNLQFMP 152
Query: 325 ARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384
+L +DEI++ LD S I + + R + V+ + +A D VI L G
Sbjct: 153 K-ILLLDEITSALDESNKRNIEEMIHRYVREQN-VAVLWITHDKDQAIRHADKVITLQPG 210
Query: 385 QI 386
Sbjct: 211 HA 212
|
Length = 223 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 30/161 (18%)
Query: 857 LTALVGVSGAGKTT-------LMDVLAGRKTGGII---EGDIYISGYPKRQETFARISGY 906
+TA++G SG GK+T +++++ KT G I + +I+ Y E G
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV--EELRTNVGM 109
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG---- 962
Q P ++ +++ + +I + ++E++E SL GA I
Sbjct: 110 VFQKPNPFPK-SIYDNVTYGP------KIHGIKDKKTLDEIVE----KSLRGAAIWDELK 158
Query: 963 ---LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
GLS Q++RL IA L P ++ MDEPTS LD
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 56/240 (23%), Positives = 99/240 (41%), Gaps = 39/240 (16%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHL---QVSGKITYNGHGFKEFVPPRTSAYVSQQ 217
+++T ++GP GKTTLL ++ R+ H+ +V GKI + G +
Sbjct: 29 NQITAIIGPSGCGKTTLLRSI-NRMNDHIPGFRVEGKIYFKGQD------------IYDP 75
Query: 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQK 277
V E + + F S YD + A +I G+K LD
Sbjct: 76 QLDVTEYRKKVGMVFQKPTPFPMSIYDNV---AFGPRIHGVKSKHKLD------------ 120
Query: 278 TSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
+VE +K L D L ++ +SGGQ++RL L V+ +DE ++
Sbjct: 121 --RIVEESLKKAALWDEVKSEL--NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
LD T +I K L+ + T++ + +A + D + + G+++ GP ++
Sbjct: 177 LDPIATQRIEKLLE---ELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.001
Identities = 49/198 (24%), Positives = 72/198 (36%), Gaps = 53/198 (26%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
IL+++S +R L+ GP GK+TLL +A + SG + + G P
Sbjct: 21 KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPE 77
Query: 209 RTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
VS Q + TV + L F Q I +PD I
Sbjct: 78 IYRQQVSYCAQTPTLFGDTVYDNLIFPWQ-------------------IRNQQPDP--AI 116
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML-KGI---SGGQKKRLTTGELLV 322
F+ L D +L K I SGG+K+R++ L
Sbjct: 117 FLDDLER---------------FALP--------DTILTKNIAELSGGEKQRISLIRNLQ 153
Query: 323 GPARVLFMDEISNGLDSS 340
+VL +DEI++ LD S
Sbjct: 154 FMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 61/196 (31%)
Query: 852 FRPGVLTALVGVSGAGKTTLMD---VLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE 908
F G LT + G +G+GK+T++D + G +G I
Sbjct: 18 FGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGC---------IVAA-- 66
Query: 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING 968
EL + LSG G
Sbjct: 67 ------------------------VSAEL------------IFTRLQLSG---------G 81
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
L +A+ + + +DE GLD R + + + G ++ H P
Sbjct: 82 EKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141
Query: 1029 SIDIFESFDELLFMKR 1044
++ E D+L+ +K+
Sbjct: 142 --ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 0.001
Identities = 45/190 (23%), Positives = 86/190 (45%), Gaps = 37/190 (19%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
++L +++ +F PG ++G++GAGK+TL+ ++AG ++ + +G +
Sbjct: 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG------VDKE--FNGEARPAPGIKV 70
Query: 903 ISGYCEQNDIHSPGLTVLESLL---------------FSAWLRLPSE--IELETQRAFVE 945
GY Q P TV E++ SA P L ++A ++
Sbjct: 71 --GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQ 128
Query: 946 EVMELVELTSLSG-------ALIGLPG---INGLSTEQRKRLTIAVELVANPSIVFMDEP 995
E+++ + L AL P + LS +R+R+ + L++ P ++ +DEP
Sbjct: 129 EIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEP 188
Query: 996 TSGLDARAAA 1005
T+ LDA + A
Sbjct: 189 TNHLDAESVA 198
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 55/236 (23%), Positives = 96/236 (40%), Gaps = 44/236 (18%)
Query: 126 FIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
+I+ M R ++ + IL D+S P +LG +GK+TLL +AG
Sbjct: 3 YIYTMN----RVSKVVPPKK---EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-- 53
Query: 186 GHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
+ +G P Y+ Q+ TVRE ++ +GV D
Sbjct: 54 ---------VDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVE-----EGVAEIKDA 99
Query: 246 ITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297
+ K A +PD D+D AL ++ L + I+ L+ D
Sbjct: 100 LDRFNEISAKFA--EPDADMD------ALLAEQAEL--QEIIDAADAWDLDRKLEIAMDA 149
Query: 298 L---VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 350
L D + +SGG+++R+ LL+ +L +DE +N LD+ + + ++L+
Sbjct: 150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ 205
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 0.001
Identities = 48/184 (26%), Positives = 83/184 (45%), Gaps = 13/184 (7%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKT-GGIIEGDIYISGYPKRQ 897
++Q L V+ G + L+G +GAGKTTL+ L G R T G I+ I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
++ E + S +TV E+L + +E + +R ++ V EL L
Sbjct: 77 IMREAVAIVPEGRRVFSR-MTVEENLAMGGFF---AERDQFQER--IKWVYEL--FPRLH 128
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
I G +S +++ L I L++ P ++ +DEP+ GL + T+ +
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ 186
Query: 1018 GRTI 1021
G TI
Sbjct: 187 GMTI 190
|
Length = 237 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 34/112 (30%), Positives = 55/112 (49%), Gaps = 21/112 (18%)
Query: 288 ILGLDTCADTLVGDE--MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI 345
IL L DT VG+ ML SGGQK+R++ L+ A +L +D+ + +D T +QI
Sbjct: 434 ILRLPQGYDTEVGERGVML---SGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 346 IKYLKHSTRALDGTTVI------SLLQPAPEAYELFDDVILLSEGQIVYQGP 391
+ L+ + +G TVI S L A +++++ G I +G
Sbjct: 491 LHNLR---QWGEGRTVIISAHRLSALTEA-------SEILVMQHGHIAQRGN 532
|
Length = 569 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 0.002
Identities = 56/253 (22%), Positives = 101/253 (39%), Gaps = 58/253 (22%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFV 206
L+DLS + P L +L+GP +GKTTL+ + G+ G++ ++G E
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH- 76
Query: 207 PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
++A G+G K+ T + E+L++
Sbjct: 77 -------------RIARA-------------GIGRKFQKPTVFE------NLTVRENLEL 104
Query: 267 FMKS----FA-LGGQKTS---LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+ FA L + + ++ ++ +GL D L +S GQK+ L G
Sbjct: 105 ALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL-----LSHGQKQWLEIG 159
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF-DD 377
LL ++L +DE G+ + T + + LK +L G I +++ D
Sbjct: 160 MLLAQDPKLLLLDEPVAGMTDAETEKTAELLK----SLAGKHSILVVEHDMGFVREIADK 215
Query: 378 VILLSEGQIVYQG 390
V +L EG ++ +G
Sbjct: 216 VTVLHEGSVLAEG 228
|
Length = 249 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 45/199 (22%), Positives = 79/199 (39%), Gaps = 64/199 (32%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFVP 207
L+DLS + P L +++GP +GKTT++ + G+ G + + G G E
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEH-- 72
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPD----ED 263
Q+A G+G K+ + + + E+
Sbjct: 73 ------------QIARA-------------GIGRKF----------QKPTVFENLTVFEN 97
Query: 264 LDIFMKS----FAL------GGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313
L++ + FA +K +E +++ +GL AD L G +S GQK+
Sbjct: 98 LELALPRDKSVFASLFFRLSAEEKDR--IEEVLETIGLADEADRLAGL-----LSHGQKQ 150
Query: 314 RLTTGELLVGPARVLFMDE 332
L G LL+ ++L +DE
Sbjct: 151 WLEIGMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.002
Identities = 56/246 (22%), Positives = 95/246 (38%), Gaps = 45/246 (18%)
Query: 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKE-FVPPR 209
DL+ ++ + L+G SGK+ LA+ G L L Q SG+I +G + R
Sbjct: 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGR 62
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A + Q T L G I L K++
Sbjct: 63 HIATIMQN-----PRTAFNPLFTMGN--------HAIETLRSLGKLSK------------ 97
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG----ISGGQKKRLTTGELLVGPA 325
Q +L++E + + GL +E+LK +SGG +R+ L+
Sbjct: 98 ------QARALILEALEAV-GLPD------PEEVLKKYPFQLSGGMLQRVMIALALLLEP 144
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
L DE + LD +++K L+ R L GT ++ + + D+V ++ +G+
Sbjct: 145 PFLIADEPTTDLDVVNQARVLKLLR-ELRQLFGTGILLITHDLGVVARIADEVAVMDDGR 203
Query: 386 IVYQGP 391
IV +G
Sbjct: 204 IVERGT 209
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ +++ +L ++ +DE + GLD + Q+++ LK S + + T+I +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLK-SLQTDENKTIILVSH 204
Query: 367 PAPEAYELFDDVILLSEGQIVYQG-PR 392
E D+VI++ EG IV Q P+
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPK 231
|
Length = 286 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 0.002
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQ 1027
LS Q++R+ IA L+ P I+ +DE TS LD+ + ++ +T+ +I + +TI+ H+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.002
Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 17/96 (17%)
Query: 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW 219
P + L++GPP SGKTTL ALA LG G G V Q
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELG----------PPGGGVIYIDGEDILEEVLDQLL 50
Query: 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
+ + + + + LAR+ K
Sbjct: 51 LIIVGGKKASGSGELRLRL-------ALALARKLKP 79
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 56/213 (26%), Positives = 97/213 (45%), Gaps = 28/213 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L NV +PG + + G +G+GK+TL+ ++ ++ + EGDI P ++
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIP-----LTKL- 382
Query: 905 GYCEQNDIHSPGLTVLES--LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
Q D L V+ LFS + + I L A +E+ + L S+ ++
Sbjct: 383 ----QLDSWRSRLAVVSQTPFLFSD--TVANNIALGRPDATQQEIEHVARLASVHDDILR 436
Query: 963 LP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
LP G G LS Q++R++IA L+ N I+ +D+ S +D R ++ +R
Sbjct: 437 LPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ 496
Query: 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
GRT++ + H+ S E+L M+ G
Sbjct: 497 W-GEGRTVIISAHRLS--ALTEASEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.002
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ LS Q++R++IA L+ ++ DEPT LD+ + VM + + + G T++ H
Sbjct: 143 SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202
Query: 1027 QPSI 1030
P +
Sbjct: 203 DPQV 206
|
Length = 648 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.002
Identities = 47/156 (30%), Positives = 78/156 (50%), Gaps = 27/156 (17%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-- 912
G + L+G SG GKTT++ ++AG + EG I+I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 913 --HS----PGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
S P +++ E++ + L +P E E + + V+E +ELV+L +
Sbjct: 83 VFQSYALFPHMSLGENVGYGLKMLGVPKE-ERKQR---VKEALELVDLAGFEDRYV---- 134
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ +S Q++R+ +A L+ P ++ DEP S LDA
Sbjct: 135 -DQISGGQQQRVALARALILKPKVLLFDEPLSNLDA 169
|
Length = 351 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS Q++RL IA + P+++ MDEP S LD A ++ ++ + TI+ H
Sbjct: 150 LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL-KKNFTIIVVTH 206
|
Length = 251 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 33/229 (14%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVP 207
IL+ +S I S++T ++GP GK+T L L L ++V G++ + E
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE--- 78
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
+++ QV+ + + L F S YD +A KI G +P ++D
Sbjct: 79 --RRVNLNRLRRQVSMVHPKPNL-FPM------SVYD---NVAYGVKIVGWRPKLEIDDI 126
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
++S AL +++ + LD +SGGQ++RL L +V
Sbjct: 127 VES-ALKDADLWDEIKHKIHKSALD--------------LSGGQQQRLCIARALAVKPKV 171
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
L MDE GLD + + ++ L S R T++ + + L D
Sbjct: 172 LLMDEPCFGLDPIASMK-VESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.002
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIH 1026
LS Q++RL IA L P ++ MDEP GLD A+ V ++++ + + T+V H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 14/208 (6%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFA 901
L N + F+ +T ++G +G+GK+T++ + G +TG I GD I K+ +
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 902 RIS---GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R+ G Q P + + + P + Q A+ ++V EL++L L
Sbjct: 87 RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLGENKQEAY-KKVPELLKLVQLPE 141
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VNT 1017
+ LS Q++R+ +A + + + + +DEPT GLD + + +
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ I+ H + DE++ M G
Sbjct: 201 KKRIIMVTHNMD-QVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 43/209 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP- 208
+L +++ I + L+GP GK+TLL + G L +G++ N + +P
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL-DMLPAA 75
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R + Q ++V + L FA +
Sbjct: 76 QRQIGILFQDALLFPHLSVGQNLLFA------------------------LPAT------ 105
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+K G + + + + GLD + +SGGQ+ R+ L+ +
Sbjct: 106 LK----GNARRNAANAALERS-GLDGAF-----HQDPATLSGGQRARVALLRALLAQPKA 155
Query: 328 LFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
L +DE + LD + Q +++ RA
Sbjct: 156 LLLDEPFSRLDVALRDQFRQWVFSEVRAA 184
|
Length = 213 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.003
Identities = 45/191 (23%), Positives = 84/191 (43%), Gaps = 28/191 (14%)
Query: 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGG 882
+ + +E K + Q L ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNV 60
Query: 883 IIEGDIYISG---YPKRQETFA--RISGYCEQNDIHSPGLTVLESLLFSAWLR-LPSEIE 936
IEG++ + G Y K + + G Q P +++ +++ + + + + E
Sbjct: 61 KIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKE 119
Query: 937 LE-------TQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989
L+ + A +EV + ++ ++L LS Q++RL IA + P +
Sbjct: 120 LDKIVEWALKKAALWDEVKDDLKKSAL-----------KLSGGQQQRLCIARTIAVKPDV 168
Query: 990 VFMDEPTSGLD 1000
+ MDEPTS LD
Sbjct: 169 ILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.003
Identities = 55/241 (22%), Positives = 98/241 (40%), Gaps = 37/241 (15%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ P +VG +GAGK+++++ L + + +G I I
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDC---------- 1298
Query: 904 SGYCEQNDIHSPGLTVLES---------LLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
D+ GLT L +LFS +R + E A + E +E +
Sbjct: 1299 -------DVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIK 1351
Query: 955 S-LSGALIGL-----PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ GL G S QR+ L++A L+ I+ +DE T+ +D R +++
Sbjct: 1352 DVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQ 1411
Query: 1009 RTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAV 1068
RT+R + T++ H+ + I D++L + G L Y P S + +F V
Sbjct: 1412 RTIREEFKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV 1468
Query: 1069 E 1069
Sbjct: 1469 H 1469
|
Length = 1495 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 57/255 (22%), Positives = 92/255 (36%), Gaps = 65/255 (25%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
K+ L ++S I + L+G +GKTTLL L G SG+I ++G ++
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG---DPRATSGRIVFDGKDITDWQ 73
Query: 207 PPRTS----AYVSQQDWQVAEMTVRETLDFAG-------QCQGVGSKYDMITELA-RREK 254
+ A V + + MTV E L G + + Y++ L RR +
Sbjct: 74 TAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQ 133
Query: 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314
AG +SGG+++
Sbjct: 134 RAGT------------------------------------------------MSGGEQQM 145
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374
L G L+ R+L +DE S GL QI ++ G T+ + Q A +A +L
Sbjct: 146 LAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE--QGMTIFLVEQNANQALKL 203
Query: 375 FDDVILLSEGQIVYQ 389
D +L G +V +
Sbjct: 204 ADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 58/251 (23%), Positives = 103/251 (41%), Gaps = 54/251 (21%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKITYNGHGF-K 203
T++D+L+ I+ + LLGP GKTT+L +AG L+ G+I +G
Sbjct: 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-----LEKPTEGQIFIDGEDVTH 72
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDED 263
+ R V Q M++ E + + + GV E +R K A
Sbjct: 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA------- 120
Query: 264 LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG 323
++++ L D V D+ ISGGQ++R+ L+
Sbjct: 121 ----------------------LELVDLAGFEDRYV-DQ----ISGGQQQRVALARALIL 153
Query: 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD---GTTVISLLQPAPEAYELFDDVIL 380
+VL DE + LD++ + + ++ R L T + + EA+ + D VI+
Sbjct: 154 KPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIV 209
Query: 381 LSEGQIVYQGP 391
+++G+I+ G
Sbjct: 210 MNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETFARISGYC 907
G+ + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
TV LL S T F E+ + +++ + +
Sbjct: 77 ----------TV-RDLLSS---ITKD---FYTHPYFKTEIAKPLQIEQILDRE-----VP 114
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFA 162
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.003
Identities = 55/179 (30%), Positives = 81/179 (45%), Gaps = 44/179 (24%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
+ G LVG SG GK+TL+ ++AG + I G+I+I G R+
Sbjct: 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGG---------RVVNEL 71
Query: 908 E----------QNDIHSPGLTVLESLLFSAW-LR---LP-SEIELETQRAFVEEVMELVE 952
E QN P ++V E++ A+ L+ +P +EIE +R V E ++E
Sbjct: 72 EPADRDIAMVFQNYALYPHMSVRENM---AYGLKIRGMPKAEIE---ER--VAEAARILE 123
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMR 1009
L L L P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 124 LEPL---LDRKP--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 306 GISGG-QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+SGG Q+K + LL P RVL +DE + G+D Y+I K + + A +G +I +
Sbjct: 403 RLSGGNQQKAVLAKMLLTNP-RVLILDEPTRGVDVGAKYEIYKLI--NQLAQEGVAIIVV 459
Query: 365 LQPAPEAYELFDDVILLSEGQI 386
E L D V+++ EG++
Sbjct: 460 SSELAEVLGLSDRVLVIGEGKL 481
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.004
Identities = 59/312 (18%), Positives = 116/312 (37%), Gaps = 65/312 (20%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
+L ++S I + +LG +GK+ L+ L G + + SG+I Y+
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRG-MDQYEPTSGRIIYH--------- 62
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLD- 265
A + + E G+ C G + E++ + L
Sbjct: 63 ---VALCEKCGYV-------ERPSKVGEPCPVCGGTLE-------PEEVDFWNLSDKLRR 105
Query: 266 --------IFMKSFALGGQKTSLVVEYIMKIL---------GLDTCADTLVGDEMLK--- 305
+ ++FAL G T V++ +++ L + D + EM++
Sbjct: 106 RIRKRIAIMLQRTFALYGDDT--VLDNVLEALEEIGYEGKEAVGRAVDLI---EMVQLSH 160
Query: 306 -------GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
+SGG+K+R+ L + DE + LD T + L+ + +A
Sbjct: 161 RITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220
Query: 359 TTVISLLQPAPEAYE-LFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417
+ V++ PE E L D I L G+I +G V+ F G S +++ + +
Sbjct: 221 SMVLT--SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME-GVSEVEKECEVEVGE 277
Query: 418 EVTSKKDQEQYW 429
+ ++ + +
Sbjct: 278 PIIKVRNVSKRY 289
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.004
Identities = 50/198 (25%), Positives = 83/198 (41%), Gaps = 35/198 (17%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLAL--AGRLGHHLQVSGKITYNGHGFKEFVPP 208
L ++ I ++T L+GP GK+TLL L L ++++GK+T +G
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDI------ 72
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
+ VA++ ++ + F S Y+ + A + GIK + LD
Sbjct: 73 -------YGNIDVADLRIKVGMVFQKPNPFPMSIYENV---AYGLRAQGIKDKKVLD--- 119
Query: 269 KSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
VVE ++ L D D L G+SGGQ++RL + V
Sbjct: 120 -----------EVVERSLRGAALWDEVKDRL--KSHAFGLSGGQQQRLCIARTIAMEPDV 166
Query: 328 LFMDEISNGLDSSTTYQI 345
+ MDE ++ LD T++I
Sbjct: 167 ILMDEPTSALDPIATHKI 184
|
Length = 249 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 45/164 (27%), Positives = 71/164 (43%), Gaps = 24/164 (14%)
Query: 853 RPGVLTALVGVSGAGKT----TLMDVLAGRKT----GGIIEGDIYISGYPKRQETF---A 901
G ALVG SG+GK+ +++ +L G I+ + +RQ
Sbjct: 34 EAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGN 93
Query: 902 RISGYCEQ-----NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+I ++ N +H+ G + E L RL + RA E++ELV +
Sbjct: 94 KIGMIFQEPMTSLNPLHTIGKQLAEVL------RLHRGLSRAAARARALELLELVGIPEP 147
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
L P + LS QR+R+ IA+ L P ++ DEPT+ LD
Sbjct: 148 EKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.004
Identities = 61/254 (24%), Positives = 100/254 (39%), Gaps = 55/254 (21%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
++ ++S +RP L+G SGK+T LAL RL + G+I ++G
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALL-RL---INSQGEIWFDGQPLHNL--- 352
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
R+ L + Q V D + L R + I +E L +
Sbjct: 353 ----------------NRRQLLPVRHRIQVVFQ--DPNSSLNPRLNVLQII-EEGLRVHQ 393
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ + Q+ V+ +M+ +GLD E SGGQ++R+ L+ ++
Sbjct: 394 PTLS-AAQREQQVIA-VMEEVGLDPETRHRYPAEF----SGGQRQRIAIARALILKPSLI 447
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY-----------ELFDD 377
+DE ++ LD + QI+ LK SL Q AY L
Sbjct: 448 ILDEPTSSLDKTVQAQILALLK------------SLQQKHQLAYLFISHDLHVVRALCHQ 495
Query: 378 VILLSEGQIVYQGP 391
VI+L +G++V QG
Sbjct: 496 VIVLRQGEVVEQGD 509
|
Length = 529 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.004
Identities = 51/190 (26%), Positives = 78/190 (41%), Gaps = 27/190 (14%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
IL L+ +RP + ++GP SGK+TL LAGR + + G + + G E P
Sbjct: 15 AILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPE 73
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
A + + + GV +++ + T L G +P LD F
Sbjct: 74 -----------DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF- 118
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
F L+ E KI L D L+ + G SGG+KKR ++ V +
Sbjct: 119 -DFQ------DLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELC 167
Query: 329 FMDEISNGLD 338
+DE +GLD
Sbjct: 168 ILDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 0.004
Identities = 46/188 (24%), Positives = 87/188 (46%), Gaps = 41/188 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFA 901
Q+L +++ +F PG ++G++GAGK+TL+ ++AG EG+ + G
Sbjct: 21 QILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK--EFEGEARPAPGI-------- 70
Query: 902 RISGYCEQNDIHSPGLTVLESL------LFSAWLRLPSEI------------ELETQRAF 943
++ GY Q P TV E++ + +A R +EI L ++
Sbjct: 71 KV-GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRF-NEIYAAYAEPDADFDALAAEQGE 128
Query: 944 VEEVMELVELTSLSGAL------IGLP----GINGLSTEQRKRLTIAVELVANPSIVFMD 993
++E+++ + L L + P + LS +R+R+ + L+ P ++ +D
Sbjct: 129 LQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLD 188
Query: 994 EPTSGLDA 1001
EPT+ LDA
Sbjct: 189 EPTNHLDA 196
|
Length = 556 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.004
Identities = 55/212 (25%), Positives = 92/212 (43%), Gaps = 21/212 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFA 901
L +V + G A++G +G+GK+TL+ L G + T G + G+ I+ K+ +
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA-GKKNKKLK 81
Query: 902 RIS---GYCEQNDIHSPGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
+ G Q H L TV + + F P + + A ++ E++EL
Sbjct: 82 PLRKKVGIVFQFPEHQ--LFEETVEKDICFG-----PMNFGVSEEDA-KQKAREMIELVG 133
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI- 1014
L L+ LS Q +R+ IA L P ++ +DEPT+GLD + +M +
Sbjct: 134 LPEELLARSPFE-LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLH 192
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
G T V H D D+++ M +G
Sbjct: 193 KEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223
|
Length = 290 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1419 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-255 Score=2347.25 Aligned_cols=1343 Identities=50% Similarity=0.860 Sum_probs=1260.6
Q ss_pred cchhHhhhHHHhhcCCChhhhhhcccccc-CCCceeeeccccChHhhHHHHHHHhhcccCChHHHHHHHHHHHHhcCCCC
Q 000562 19 VEDEEALRWAALERLPTYARARRGIFKNV-VGDVKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLEL 97 (1419)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (1419)
|||||+|+|||+|||||++| ++..+. ++ ++|+.++++.+++...++..+..++|+|+++.++|+|++++ ++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~--~~ 83 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIFES---EVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV--EL 83 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhccC---cccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc--cC
Confidence 45999999999999999999 555432 22 79999999999999999999999999999999999999988 89
Q ss_pred CCcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcceeeeecceEeEeCCeEEEEEcCCCCcHHHH
Q 000562 98 PKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177 (1419)
Q Consensus 98 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTL 177 (1419)
|.++++++++.+++++..| ||+.|...+..+.+++..+.. ++.+.+||+|+||.++||||++++||||||||||
T Consensus 84 p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttl 157 (1391)
T KOG0065|consen 84 PTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGKTTL 157 (1391)
T ss_pred CceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCchHHH
Confidence 9999999999999999876 999999999998877665543 5566789999999999999999999999999999
Q ss_pred HHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhC
Q 000562 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257 (1419)
Q Consensus 178 L~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~ 257 (1419)
|++|+|.++......|+|+|||++.+++.+++.++|++|+|+|+|+|||||||+|+++|++++.+++ +..|+|++.
T Consensus 158 lkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~~~- 233 (1391)
T KOG0065|consen 158 LKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREKLA- 233 (1391)
T ss_pred HHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHHHH-
Confidence 9999999988777789999999999999999999999999999999999999999999999999988 556666542
Q ss_pred CCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCC
Q 000562 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL 337 (1419)
Q Consensus 258 ~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgL 337 (1419)
..+|++++++||++|+||+|||+++||+||||||||+||+++++++++++|||+|+||
T Consensus 234 ----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GL 291 (1391)
T KOG0065|consen 234 ----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGL 291 (1391)
T ss_pred ----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeecccccc
Confidence 2689999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHH
Q 000562 338 DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1419)
Q Consensus 338 Ds~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~ 417 (1419)
|++|+.+++++||+++|..+.|.+++++||+++++++||+|++|++|+++|+||++++++||+++||.||+++++|||++
T Consensus 292 DSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ADfLt 371 (1391)
T KOG0065|consen 292 DSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTADFLT 371 (1391)
T ss_pred cHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHH
Q 000562 418 EVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLL 497 (1419)
Q Consensus 418 ~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~ 497 (1419)
+++++++++++|..+..|+.+.++++|.+.|.+++.++++..+++.++++.+.|+.++..++|.++.|+|++.|..|+++
T Consensus 372 ~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R~f~ 451 (1391)
T KOG0065|consen 372 EVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIREFL 451 (1391)
T ss_pred HhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccc
Q 000562 498 LMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHF 577 (1419)
Q Consensus 498 ~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~ 577 (1419)
+++||.+++++++++.+++|+++|++|+++.+ .+..++..+.|++||++++.++++++++.++++++||++|||+..|
T Consensus 452 l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~~~f 529 (1391)
T KOG0065|consen 452 LMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRDLSF 529 (1391)
T ss_pred HHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhcccc
Confidence 99999999999999999999999999999985 5566778899999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Q 000562 578 YPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFA 657 (1419)
Q Consensus 578 y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~ 657 (1419)
||+|+++++++++++|+.+++.++|.+|+||++|+.+++++||++++++++.+++++++||+++++++++.+|+++|++.
T Consensus 530 Y~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g~~~ 609 (1391)
T KOG0065|consen 530 YPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIGGIL 609 (1391)
T ss_pred cChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcccccC------------CC---CCccchHHHhhh
Q 000562 658 MLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKA------------GN---SNFSLGEAILRQ 722 (1419)
Q Consensus 658 ~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~------------~~---~~~~~g~~~l~~ 722 (1419)
++++.+++||+|++.+||+||+|++|++|++|+++++++|||++.+|.|.+ .. ...+.|..+++.
T Consensus 610 ~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~v~g 689 (1391)
T KOG0065|consen 610 LLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDYVSG 689 (1391)
T ss_pred HHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceEEec
Confidence 999999999999999999999999999999999999999999999999972 11 135778899998
Q ss_pred cCCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhh-cCchhhHHHHHhhhccc
Q 000562 723 RSLF-----PESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRR-KGENVVIELREYLQRSS 796 (1419)
Q Consensus 723 ~~~~-----~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 796 (1419)
+++. +..+|+|+++|+++||+++|++++.+++.|+++.++.+..+..++..++.... .......+. ..
T Consensus 690 ~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~ 763 (1391)
T KOG0065|consen 690 RDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSAGSSSEIEK------LD 763 (1391)
T ss_pred ccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhccccccccc------cc
Confidence 8887 78899999999999999999999999999999998888877765544332111 000000000 00
Q ss_pred cccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHh
Q 000562 797 SLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 876 (1419)
+... .+.++++.|+.+..++++|+.|.++++.+++..| +++++|+||||.++||.++||||+||||||||||+||
T Consensus 764 ~s~~--~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA 838 (1391)
T KOG0065|consen 764 DSSH--QEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLA 838 (1391)
T ss_pred cccc--cccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHh
Confidence 0000 1345778899999999999999999999988766 6789999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 000562 877 GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956 (1419)
Q Consensus 877 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~ 956 (1419)
||+++|.++|+|.|||+|.+++.++|.+|||+|+|+|.+.+||||+|.|+|+||+|.+++.+++.++||+|++.+||.++
T Consensus 839 ~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~ 918 (1391)
T KOG0065|consen 839 GRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY 918 (1391)
T ss_pred cCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHhhCC-CcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh
Q 000562 957 SGALIGLPGINGLSTEQRKRLTIAVELVANP-SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035 (1419)
Q Consensus 957 ~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p-~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~ 1035 (1419)
+|.+||.|| +|||++|||||+||+||++|| .||||||||||||++++..|++++|+++++|+|||||+||||.++++.
T Consensus 919 ~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~ 997 (1391)
T KOG0065|consen 919 ADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEA 997 (1391)
T ss_pred hhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHH
Confidence 999999999 899999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEecCCEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCCccccccccChhhhhcccchHHHHHHhcHHHHHHHH
Q 000562 1036 FDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRE 1115 (1419)
Q Consensus 1036 ~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npA~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 1115 (1419)
||++++|++||++||+||+|++++.+++||++++|++ ||+..|||||||||++.+.+.+.+.||++.|++|++++++++
T Consensus 998 FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~-~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e 1076 (1391)
T KOG0065|consen 998 FDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVK-CISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKE 1076 (1391)
T ss_pred HhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCcc-CCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHH
Confidence 9999999999999999999999999999999998885 666669999999999999988889999999999999999999
Q ss_pred HHHhhCCCCCC-CcCCCCCCccCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHH
Q 000562 1116 LVESLSKPSPS-SKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLF 1194 (1419)
Q Consensus 1116 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~ 1194 (1419)
++++++.|+++ +.+..++++|++|+|.|++.|+|||+++|||+|+|+.+|++++++.||++|++||++|+ ++||++
T Consensus 1077 ~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~lq 1153 (1391)
T KOG0065|consen 1077 LVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGLQ 1153 (1391)
T ss_pred HHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHHH
Confidence 99999999998 88888999999999999999999999999999999999999999999999999999995 789999
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHH
Q 000562 1195 NAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAV 1274 (1419)
Q Consensus 1195 ~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~ 1274 (1419)
|.+|++|+++++.+.+++...+|.+..||.++|||+++||||+.||++||+++|+||.++++++|.+|+|+|+||++++.
T Consensus 1154 n~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~ 1233 (1391)
T KOG0065|consen 1154 NAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTAS 1233 (1391)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHH
Confidence 99999999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHH
Q 000562 1275 KFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTS 1354 (1419)
Q Consensus 1275 ~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~ 1354 (1419)
+|+||++++++..+|++++|||+.+++||.++|+++++++++++++||||++|++.||+||+||||+||++|.++|++..
T Consensus 1234 ~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~ 1313 (1391)
T KOG0065|consen 1234 KFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISS 1313 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcccccccC-----CCCCcCHHHHHHHhhC----CCccchhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000562 1355 QFGDDDKLVKLSD-----GTGSVPVKHLLKDVFG----FRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419 (1419)
Q Consensus 1355 ~~~~~~~~~~~~~-----~~~~~~~~~~l~~~~g----~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1419 (1419)
++||.+..|...+ ++++.||++|++++|| |.++.......+.++|.+++.+++.+++|+.|+|||
T Consensus 1314 ~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1314 QLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred HhCCCceeeecCCccccCCCCCcCHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 9999987774333 3357899999999999 999999988889999999999999999999999987
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-237 Score=2352.85 Aligned_cols=1415 Identities=59% Similarity=1.016 Sum_probs=1276.6
Q ss_pred cccccccCCCC-C---CCcchhHhhhHHHhhcCCChhhhhhcccccc-----CCC---ceeeeccccChHhhHHHHHHHh
Q 000562 5 AENVFSRTSSF-R---DEVEDEEALRWAALERLPTYARARRGIFKNV-----VGD---VKEVDVSELAVQEQRLVLDRLV 72 (1419)
Q Consensus 5 ~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~ 72 (1419)
.+++|++.+.+ + ..|||||+|+|||+||||||+|+|++++.+. .|+ .+|+|+++|+.++++.++++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (1470)
T PLN03140 23 MEDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVF 102 (1470)
T ss_pred hhhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhhhcccccccccccccccccccccCChHHHHHHHHhhh
Confidence 45788764323 2 3678999999999999999999999999653 122 2369999999999999999999
Q ss_pred hcccCChHHHHHHHHHHHHhcCCCCCCcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcceeeee
Q 000562 73 NAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILD 152 (1419)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~ 152 (1419)
+++++|+++|++++++|.|++|+++|++||||+||+|++++.++++.+||++|.+.+.++.+...++....++.+++||+
T Consensus 103 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~ 182 (1470)
T PLN03140 103 KVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILK 182 (1470)
T ss_pred cccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceecc
Confidence 99999999999999999999999999999999999999999999999999999999988876654443234445688999
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHH
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDF 232 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f 232 (1419)
|||+.++|||+++|+||||||||||||+|+|+++++..++|+|+|||+++++..+++.++||+|+|.|++++||+|||.|
T Consensus 183 ~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f 262 (1470)
T PLN03140 183 DASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDF 262 (1470)
T ss_pred CCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHH
Confidence 99999999999999999999999999999999988767899999999999877777889999999999999999999999
Q ss_pred hhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHh
Q 000562 233 AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312 (1419)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqk 312 (1419)
+++|++++.+++...+..++|++.++.|+.++|.+||+...++.+.+..++++|+.+||++|+||.||++++++||||||
T Consensus 263 ~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGer 342 (1470)
T PLN03140 263 SARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQK 342 (1470)
T ss_pred HHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccc
Confidence 99998877666665566677888788888899999999988888888889999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcCh
Q 000562 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPR 392 (1419)
Q Consensus 313 kRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~ 392 (1419)
|||+||++|+++|+++||||||+|||+.++.++++.|+++++..+.|+|+++|||.++++++||+|++|++|+++|+||+
T Consensus 343 kRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~ 422 (1470)
T PLN03140 343 KRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPR 422 (1470)
T ss_pred eeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCH
Confidence 99999999999999999999999999999999999999998866788899999999999999999999999999999999
Q ss_pred hhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCccccccCCc
Q 000562 393 VSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHP 472 (1419)
Q Consensus 393 ~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 472 (1419)
+++.+||+++||+||+++|+|||+++++++++++++|.....|++++++++++++|++++.++.+.+++..+.++...++
T Consensus 423 ~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 502 (1470)
T PLN03140 423 DHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHK 502 (1470)
T ss_pred HHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhccc
Confidence 99999999999999999999999999999988878887766788888999999999999998888888777766665666
Q ss_pred ccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHHHHHHHHHHH
Q 000562 473 AALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIIL 552 (1419)
Q Consensus 473 ~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~ 552 (1419)
.....++|..++++|++.|++|++++++||+..+++++++.+++|+++|++||+++++.....++..+.|++||++++.+
T Consensus 503 ~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~ 582 (1470)
T PLN03140 503 AALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINM 582 (1470)
T ss_pred ccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHH
Confidence 66666789999999999999999999999999999999999999999999999998766555667788999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHH
Q 000562 553 FNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQM 632 (1419)
Q Consensus 553 ~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l~~~~~~~~ 632 (1419)
++++.++..++.+||||+|||+.+||++|+|++++++.++|+.++++++|++|+|||+|+.+++++||.+++++++.+++
T Consensus 583 ~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~ 662 (1470)
T PLN03140 583 FNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQM 662 (1470)
T ss_pred HHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcccccC-CCC
Q 000562 633 SIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKA-GNS 711 (1419)
Q Consensus 633 ~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~-~~~ 711 (1419)
+.++|++++++++++.+|+++++++++++++++||++++++||+||+|++|+||+.|+++++++|||.+.+|.+.. .+.
T Consensus 663 ~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~ 742 (1470)
T PLN03140 663 AAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN 742 (1470)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998886532 233
Q ss_pred CccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcC-------ch-
Q 000562 712 NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKG-------EN- 783 (1419)
Q Consensus 712 ~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~- 783 (1419)
....|..+|+.+++...+.|+|+++|++++|+++|+++++++++|.++.........++..+........ ++
T Consensus 743 ~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 822 (1470)
T PLN03140 743 STRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADG 822 (1470)
T ss_pred CcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCccCCCCccccccchhhhhccccccccccccccc
Confidence 4678999999999999889999999999999999999999999999876655544332211110000000 00
Q ss_pred hh---HHH--HHhhhc-----cccc--cccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeE
Q 000562 784 VV---IEL--REYLQR-----SSSL--NGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGA 851 (1419)
Q Consensus 784 ~~---~~~--~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~ 851 (1419)
.. ... +..... .... .....+.+++.+|+.|.+++|+|++|.++.+.+.++.+...+++.+|+|||++
T Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~ 902 (1470)
T PLN03140 823 NNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGA 902 (1470)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEE
Confidence 00 000 000000 0000 00012334567788999999999999999887776666666777899999999
Q ss_pred EeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHHHHHhhhcC
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1419)
Q Consensus 852 i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 931 (1419)
++|||++||||||||||||||++|+|+.++|..+|+|.+||.+..+..+++.+|||+|+|.+++.+||+|+|.|++.+|.
T Consensus 903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~ 982 (1470)
T PLN03140 903 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRL 982 (1470)
T ss_pred EECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCC
Confidence 99999999999999999999999999987667899999999987655567789999999999999999999999998888
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHH
Q 000562 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1419)
Q Consensus 932 ~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1419)
+...+.+++.+.++++++.++|.+++|+.+|.+++++|||||||||+||++|+.+|+||||||||||||+.++..+++.|
T Consensus 983 ~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L 1062 (1470)
T PLN03140 983 PKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1062 (1470)
T ss_pred CCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Confidence 76666666778899999999999999999998888899999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCCccccccccChh
Q 000562 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPV 1091 (1419)
Q Consensus 1012 ~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npA~~~l~v~~~~ 1091 (1419)
++++++|+|||||+|||+.++++.||++++|++||+++|+||.+++++++++||++++|+++||+++||||||+|+++.+
T Consensus 1063 ~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~ 1142 (1470)
T PLN03140 1063 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLA 1142 (1470)
T ss_pred HHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhccc
Confidence 99998899999999999977899999999999889999999999999999999999988888999999999999999877
Q ss_pred hhhcccchHHHHHHhcHHHHHHHHHHHhhCCCCCCCcCCCCCCccCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHH
Q 000562 1092 EESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVV 1171 (1419)
Q Consensus 1092 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~ 1171 (1419)
.+.+.+.||++.|++|++++++++++++++.++++.++..++++|++++|+|+++|+||+++++||||.|+++|++++++
T Consensus 1143 ~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~ 1222 (1470)
T PLN03140 1143 AEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLA 1222 (1470)
T ss_pred ccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHH
Confidence 66666679999999999999998888888777666666666788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCCCCHHhHHHHHhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhhhccCCCCChHHHHHHHHHHHHHH
Q 000562 1172 ISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPY 1251 (1419)
Q Consensus 1172 ~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~ 1251 (1419)
+|+++|++||+++++..+++++++++|++|++++|+++.++++++|.+..||+||+|||++|+|++++|++|++++|+||
T Consensus 1223 ~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~ 1302 (1470)
T PLN03140 1223 AALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPY 1302 (1470)
T ss_pred HHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHH
Confidence 99999999999998877889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCc
Q 000562 1252 VFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRI 1331 (1419)
Q Consensus 1252 ~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~i 1331 (1419)
.++++++|++|+|||+||++++.+||||+++++++.++++++|+++++++||.++|+++++++++++++||||++|+++|
T Consensus 1303 ~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~i 1382 (1470)
T PLN03140 1303 VLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKI 1382 (1470)
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhCHHHHHHHHHHHHhhCCCcccccccCCCCCcCHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHHHHHHH
Q 000562 1332 PIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKLSDGTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAI 1411 (1419)
Q Consensus 1332 p~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l 1411 (1419)
|+||+|+||+||++|+++|+++|||+|.+..+.+|+..+..++++|++++|||+++++|++++++++|+++|++++++++
T Consensus 1383 P~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~ 1462 (1470)
T PLN03140 1383 PKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCI 1462 (1470)
T ss_pred chHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998877777643346899999999999999999999999999999999999999
Q ss_pred HhccccCC
Q 000562 1412 KAFKFQKR 1419 (1419)
Q Consensus 1412 ~~~~~~~r 1419 (1419)
|++|||||
T Consensus 1463 ~~~~~q~r 1470 (1470)
T PLN03140 1463 RTLNFQTR 1470 (1470)
T ss_pred HHhhcccC
Confidence 99999998
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-186 Score=1866.74 Aligned_cols=1286 Identities=30% Similarity=0.500 Sum_probs=1062.3
Q ss_pred CChHHHHHHHHHHHHhcCCCCC--CcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcceeeeecc
Q 000562 77 DDPERFFDRMRKRCEAVDLELP--KIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDL 154 (1419)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 154 (1419)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||++|.+.+........+. ..+++.+++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 5677888776666666666555 9999999999999 444666789999998887664433321 12334567899999
Q ss_pred eEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC-CCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCCHHHHHH
Q 000562 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLD 231 (1419)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1419)
|+.++|||+++|+||||||||||||+|+|+..+. .+.+|+|.+||+++++.. .++.++||+|+|.|++++||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999997432 246999999999875432 3456999999999999999999999
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHH
Q 000562 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1419)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1419)
|+++++.+....+.. .+.++ .+..++.+++.+||++++||.||++.+++|||||
T Consensus 161 f~~~~~~~~~~~~~~---~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPDGV---SREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCCCC---CHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 998876432211000 00000 1123567899999999999999999999999999
Q ss_pred hHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcC
Q 000562 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1419)
Q Consensus 312 kkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1419)
||||+||++|+.+|++++|||||||||+.++.++++.|+++++..+.|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999876677888888999999999999999999999999999
Q ss_pred hhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCccccc---
Q 000562 392 RVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRR--- 468 (1419)
Q Consensus 392 ~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--- 468 (1419)
++++.+||+++||.||++.|+|||+++++++.++ +++.. .+.....++++++++|+++..++.+.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~-~~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAER-QIKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhh-hcccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 9999999999999999999999999999987543 22211 111223578899999999887776665544321110
Q ss_pred ------------cCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccc
Q 000562 469 ------------FNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDD 536 (1419)
Q Consensus 469 ------------~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~ 536 (1419)
...+.....++|..+++.|++.|.+|+++..+||+..+..++++.+++|+++|++|++.+.+.. +
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~---~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTS---D 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCch---h
Confidence 0011122345688899999999999999999999999999999999999999999999876443 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccch
Q 000562 537 GGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNV 616 (1419)
Q Consensus 537 ~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~ 616 (1419)
.+.+.|++|+++++.++.++.++..++.+|++|+|||..++|++++|++++++.++|+.++.+++|++|+|||+|+.+++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 46679999999999999999999988999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHH
Q 000562 617 VRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASV 696 (1419)
Q Consensus 617 ~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~ 696 (1419)
.+||.+++++++...++.+++++++++++++.+|+.+++++++++++++||+++.++||+||+|++|+||+.|+++++++
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCcccccC--C----------------------CCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 000562 697 NEFLGHSWDKKA--G----------------------NSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTF 752 (1419)
Q Consensus 697 nef~~~~~~~~~--~----------------------~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~ 752 (1419)
|||.+..+.|.. | +.....|+++|+. .+.....|+|.++|++++++++|.++.++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999998887741 1 0123478888885 34445568999999999999999999999
Q ss_pred HHHhcCCCCCcccccchhhhhh---HHhhhcCchhhHHHHHhhhcccccccccccc-CCcc-cc--cccceeEeccceee
Q 000562 753 FLSYLNPLGKQQAVVSKKELQE---RDRRRKGENVVIELREYLQRSSSLNGKYFKQ-KGMV-LP--FQPLSMAFGNINYF 825 (1419)
Q Consensus 753 ~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~~~~~ 825 (1419)
+++|.++..........++... .......+......+...+..........+. ...+ .+ .....+.|+|++|.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~ 768 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEE
Confidence 9999885544322211111000 0000000000000000000000000000000 0000 00 11234678888877
Q ss_pred eecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEECCccCCcccccceE
Q 000562 826 VDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARIS 904 (1419)
Q Consensus 826 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~ 904 (1419)
++.. .+++.+|+|||++++|||++||||||||||||||++|+|+.+.+ +.+|+|.+||++... .+++.+
T Consensus 769 ~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i 838 (1394)
T TIGR00956 769 VKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSI 838 (1394)
T ss_pred ecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcce
Confidence 6321 23467999999999999999999999999999999999997644 457999999998753 467889
Q ss_pred EEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 000562 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1419)
Q Consensus 905 gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~ 984 (1419)
|||+|+|.+++.+||+|+|.|++.+|.|...+.+++.++++++++.++|.+++|+.+|.++. +|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHH
Confidence 99999999999999999999999998876666667778899999999999999999987654 89999999999999999
Q ss_pred hCCC-cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHH
Q 000562 985 ANPS-IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK 1063 (1419)
Q Consensus 985 ~~p~-illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~ 1063 (1419)
.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|+|+.+++++++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~ 997 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIIN 997 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHH
Confidence 9997 999999999999999999999999999889999999999997678899999999988899999999988899999
Q ss_pred HHHhcCCCCCCCCCCCCccccccccChhhhhcccchHHHHHHhcHHHHHHHHHHHhhCCCCCCCc---CCCCCCccCchh
Q 000562 1064 YFEAVEGVPKIRPGYNPAAWMLEVTSPVEESRLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSK---KLNFSTKYSQSF 1140 (1419)
Q Consensus 1064 ~f~~~~g~~~~~~~~npA~~~l~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1140 (1419)
||+++ |+++||+++|||||++|+++.+.+.....||.+.|++|+++++..+.+++...+..... +....++|+.|+
T Consensus 998 yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 1076 (1394)
T TIGR00956 998 YFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076 (1394)
T ss_pred HHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCH
Confidence 99998 76689999999999999998755444456899999999998877666655443221111 111224689999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHhHHHHHHHHHHHHHhhhhhhhhh
Q 000562 1141 ANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVS 1220 (1419)
Q Consensus 1141 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1220 (1419)
|+|+++|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .+++|.+.
T Consensus 1077 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~ 1152 (1394)
T TIGR00956 1077 WYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQYLPPFV 1152 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHH
Confidence 999999999999999999999999999999999999999999986 57899999999999888877763 45667788
Q ss_pred hhhhhH-hhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHH-------HHHHHHHHHHHHHHHHH
Q 000562 1221 VERYVS-YRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVK-------FISYIFFMYFTMLYFTF 1292 (1419)
Q Consensus 1221 ~er~v~-~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~~~~~~~~ 1292 (1419)
.||.+| +|||++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+ |++|+++++++.+++++
T Consensus 1153 ~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s 1232 (1394)
T TIGR00956 1153 AQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFST 1232 (1394)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 888886 8999999999999999999999999999999999999999999988866 99999999999999999
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcccccc-------
Q 000562 1293 YGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVKL------- 1365 (1419)
Q Consensus 1293 ~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~~------- 1365 (1419)
+|+++++++||.++|+.+++++++++++||||++|+++||+||+|+||+||++|+++|++.|||+|.+..|..
T Consensus 1233 ~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~~~~C~~~e~~~f~ 1312 (1394)
T TIGR00956 1233 LGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADVPVTCKVKELLTFN 1312 (1394)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCCeeecCccccceec
Confidence 9999999999999999999999999999999999999999999999999999999999999999998644311
Q ss_pred -c-----------------------CCC--C----CcCHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000562 1366 -S-----------------------DGT--G----SVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAF 1414 (1419)
Q Consensus 1366 -~-----------------------~~~--~----~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~ 1414 (1419)
| +.. | ..++.+|++ .+|+++++.|++++++++|++++ +++++++.+.
T Consensus 1313 pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~-~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956 1313 PPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE-PISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred CCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH-HcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence 1 100 1 125567766 57999999999999999999988 7777777765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-94 Score=913.99 Aligned_cols=585 Identities=25% Similarity=0.412 Sum_probs=487.2
Q ss_pred ccceeEeccceeeeeccc----------------ccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHh
Q 000562 813 QPLSMAFGNINYFVDVPV----------------ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 876 (1419)
.++.+.|.++.|.++... ..++..+.++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367889999999876432 1122233455678999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc
Q 000562 877 GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956 (1419)
Q Consensus 877 g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~ 956 (1419)
|+.+++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+.....++++++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9876434689999999876433 345689999999999999999999999888776555556667789999999999999
Q ss_pred cCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhc
Q 000562 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 1036 (1419)
Q Consensus 957 ~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~ 1036 (1419)
+|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999999889999999999997788999
Q ss_pred CeEEEEecCCEEEEeCCCCCchhHHHHHHHhcCCCCCCCCCCCCccccccccChhhhh------c---ccchHHHHHHhc
Q 000562 1037 DELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPVEES------R---LGVDFAEIYRRS 1107 (1419)
Q Consensus 1037 D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~~npA~~~l~v~~~~~~~------~---~~~~~~~~~~~s 1107 (1419)
|++++|++ |+++|.|+. +++++||+++ |. +||+++|||||++|+++...+. . ......+.|+++
T Consensus 275 D~iilL~~-G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLSE-GRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEecC-CcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 99999985 799999996 5899999999 55 6999999999999998753210 0 001233445422
Q ss_pred HHHHHHHHHHHhh--CC-CCC-----CCcCCC-CCCccCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 000562 1108 NLFQRNRELVESL--SK-PSP-----SSKKLN-FSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGS 1178 (1419)
Q Consensus 1108 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~ 1178 (1419)
. .++..+..+.. .. +.+ ..+... ....+..+||+|+.+|++|++++ |||+.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 000000 11235678999999999999998 99999999999999999999999
Q ss_pred HhccCCCCCCCHHhHHHHHhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000562 1179 ICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALI 1258 (1419)
Q Consensus 1179 ~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~ 1258 (1419)
+||+++ ..+++++.|++||++++.++.+++++++.++.||+||+|||++|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999874 467899999999999999988888888999999999999999999999999999999999999999999
Q ss_pred HhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhh
Q 000562 1259 YCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWY 1338 (1419)
Q Consensus 1259 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~ 1338 (1419)
|++|+|||+||++++.+||+|+++++++.++++++|+++++++||.++|+.+++++++++++|+||+++ +||+||+|+
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~ 578 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWI 578 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799999999
Q ss_pred hhhCHHHHHHHHHHHHhhCCCccc---ccccCCCC--CcCHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 000562 1339 YWANPIAWSLYGLQTSQFGDDDKL---VKLSDGTG--SVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKA 1413 (1419)
Q Consensus 1339 ~~isp~~y~~~~l~~~~~~~~~~~---~~~~~~~~--~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~ 1413 (1419)
+|+||++|+++|++.|||++.+.. ..|++..+ ...| .++. ..++++...|.++++|++|+++|++++++++++
T Consensus 579 ~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c-~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~ 656 (659)
T PLN03211 579 KYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASC-KFVE-EDVAGQISPATSVSVLIFMFVGYRLLAYLALRR 656 (659)
T ss_pred HHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCC-ccch-hhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999875431 22322110 0111 1222 233445568999999999999999999999999
Q ss_pred ccc
Q 000562 1414 FKF 1416 (1419)
Q Consensus 1414 ~~~ 1416 (1419)
+||
T Consensus 657 ~~~ 659 (659)
T PLN03211 657 IKH 659 (659)
T ss_pred ccC
Confidence 886
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-95 Score=907.31 Aligned_cols=580 Identities=32% Similarity=0.561 Sum_probs=505.9
Q ss_pred ccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEEC
Q 000562 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYIS 891 (1419)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~ 891 (1419)
.++.+.|+|+++..+.+.. ..+++|+||||+++|||++||||||||||||||++|+|+..++ ..+|+|.+|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567889998887654321 3578999999999999999999999999999999999998764 789999999
Q ss_pred CccCCcccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCH
Q 000562 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971 (1419)
Q Consensus 892 g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSg 971 (1419)
|++...+.+++.+|||+|+|.++|++||+|+|.|+|.+|+|.+.+.++++++|+++++.+||.+++|+++|.++.+|+||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 98888888999999999999999999999999999999999988899999999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEe
Q 000562 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1419)
Q Consensus 972 Gqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~ 1051 (1419)
||||||+||.+|+.||+||||||||||||+.++.+++++|+++|++|+|||||+|||+.++++.||++++|.+ |+++|+
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 699999
Q ss_pred CCCCCchhHHHHHHHhcCCCCCCCCCCCCccccccccChh-hhhcccchHHHHHHh------cHHHHHHH-HHHHhhCCC
Q 000562 1052 GPLGSKSCELIKYFEAVEGVPKIRPGYNPAAWMLEVTSPV-EESRLGVDFAEIYRR------SNLFQRNR-ELVESLSKP 1123 (1419)
Q Consensus 1052 G~~~~~~~~~~~~f~~~~g~~~~~~~~npA~~~l~v~~~~-~~~~~~~~~~~~~~~------s~~~~~~~-~~~~~~~~~ 1123 (1419)
|+. +++.+||+++ |. +||+++|||||++|+++.. ..+. -.+..+.++. .+...+.. +..+.+...
T Consensus 253 G~~----~~~~~ff~~~-G~-~~P~~~Npadf~l~l~s~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GF-PCPELENPADFLLDLLSVDSGTRE-LEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTS 325 (613)
T ss_pred cCH----HHHHHHHHhC-CC-CCCCcCChHHHHHHHHccCCCchh-HHhHHHHHHHhhhccccchhhhhHHHHhhhcccc
Confidence 997 5899999999 65 5999999999999998842 1100 0111111111 11111111 011111111
Q ss_pred CCCCcCCCCCCccCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHhHHHHH
Q 000562 1124 SPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVA 1203 (1419)
Q Consensus 1124 ~~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~ 1203 (1419)
. + .+.....+||.|+..+++|.+++.+|||.+...|+++.+++|+++|++||++++ +..+++++.|.+|+.
T Consensus 326 ~----~--~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~ 396 (613)
T KOG0061|consen 326 K----K--VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFI 396 (613)
T ss_pred c----c--cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHH
Confidence 1 1 111127899999999999999999999999999999999999999999999976 456677999999999
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHH
Q 000562 1204 VLFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFM 1283 (1419)
Q Consensus 1204 ~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~ 1283 (1419)
+.++.+..+...++.++.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++
T Consensus 397 ~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~ 476 (613)
T KOG0061|consen 397 LSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLII 476 (613)
T ss_pred HHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHH
Confidence 99998888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcccc
Q 000562 1284 YFTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLV 1363 (1419)
Q Consensus 1284 ~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~ 1363 (1419)
++..+.++++|++++++.||..+|..+++++.+.+++|+||+++.++||+||+|++|+|+++|++||++.|||++....+
T Consensus 477 ~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~ 556 (613)
T KOG0061|consen 477 LLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRC 556 (613)
T ss_pred HHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999732333
Q ss_pred cccC-CCCCcCHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhccccC
Q 000562 1364 KLSD-GTGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQK 1418 (1419)
Q Consensus 1364 ~~~~-~~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~ 1418 (1419)
...+ ..+..++.++++ .++++.++.|.++.++++|.++|++++++++++--..+
T Consensus 557 ~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~ 611 (613)
T KOG0061|consen 557 FLSGNLCCESTGEDVLK-QLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRK 611 (613)
T ss_pred ccCcCCcccccHHHHHH-hcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 2111 223455666666 58999999999999999999999999999999755443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-94 Score=913.34 Aligned_cols=569 Identities=29% Similarity=0.499 Sum_probs=501.3
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEECCccCCcccccceEEEEccCCCCCCCcc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+++.+|+|+|++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.....+++.+|||+|+|.+++.+|
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 3567999999999999999999999999999999999987643 358999999998766667788999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCC-CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG-INGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~-~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|+|||.|++.++.+.....++++++++++++.+||.+++|+.+|.++ .++||||||||++||+||+++|+++||||||+
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 99999999999988777777778889999999999999999999754 57899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHHhcCCCCCCCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRPG 1077 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~~ 1077 (1419)
|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.||. +++.+||+++ |. +||++
T Consensus 196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~ 268 (617)
T TIGR00955 196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPEN 268 (617)
T ss_pred chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCC
Confidence 9999999999999999998899999999999888999999999998 5899999997 5799999999 55 69999
Q ss_pred CCCccccccccChhhhhc-----ccchHHHHHHhcHHHHHHHHHHHhhCCCCC---CCcCCCCCCccCchhHHHHHHHHH
Q 000562 1078 YNPAAWMLEVTSPVEESR-----LGVDFAEIYRRSNLFQRNRELVESLSKPSP---SSKKLNFSTKYSQSFANQFLACLR 1149 (1419)
Q Consensus 1078 ~npA~~~l~v~~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~Q~~~l~~ 1149 (1419)
.|||||++|+++...+.+ ...++.+.|++|+.+++..+.......+.+ ........++|..+|+.|+..|++
T Consensus 269 ~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 348 (617)
T TIGR00955 269 YNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLK 348 (617)
T ss_pred CChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence 999999999987543221 123566778887776655444332211111 111111234678999999999999
Q ss_pred HHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHhHHHHHHHHHHHHHhhhhhhhhhhhhhhHhhh
Q 000562 1150 KQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERYVSYRE 1229 (1419)
Q Consensus 1150 R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~v~~rE 1229 (1419)
|+++++||||.+..+|+++++++|+++|++||++++ ++++++++.|++|++++++++.++..+.+.++.||++|+||
T Consensus 349 R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE 425 (617)
T TIGR00955 349 RSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRE 425 (617)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999986 56789999999999999999988888889999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHH
Q 000562 1230 RAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNHNVAAI 1309 (1419)
Q Consensus 1230 ~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~ 1309 (1419)
+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|+++++++.++++++|+++++++|+..+|+.
T Consensus 426 ~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~ 505 (617)
T TIGR00955 426 TRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALT 505 (617)
T ss_pred hcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcc-cccccC--CCCCcCHHHHHHHhhCCCc
Q 000562 1310 IAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDK-LVKLSD--GTGSVPVKHLLKDVFGFRH 1386 (1419)
Q Consensus 1310 ~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~g~~~ 1386 (1419)
++++++.++++|+||++|.++||+||+|++|+||++|+++|++.|||++... +|...+ ..|..++ +++.+.||++.
T Consensus 506 ~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g-~~~l~~~g~~~ 584 (617)
T TIGR00955 506 VGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSG-EVILETLSFRN 584 (617)
T ss_pred HHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcCh-HHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999988764 332111 1133445 66666899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Q 000562 1387 DFLVIAGAMVVAFATIFAMIFAYAIKAFKFQKR 1419 (1419)
Q Consensus 1387 ~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~~r 1419 (1419)
+++|.+++++++|.++|++++++++|+-...+|
T Consensus 585 ~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 585 ADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999999999999998766655
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-92 Score=951.24 Aligned_cols=566 Identities=24% Similarity=0.397 Sum_probs=496.7
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--ceEEEEEEECCccCCc--ccccceEEEEccCCCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~ 915 (1419)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+..+ ..+++.++|++|+|.+++
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 457799999999999999999999999999999999998532 2478999999987643 234567999999999999
Q ss_pred CccHHHHHHHHhhhcCCC----CCcHHHHHH-HHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 916 GLTVLESLLFSAWLRLPS----EIELETQRA-FVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~----~~~~~~~~~-~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
.+||+|+|.|++.+|.|. ....+++.+ .++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+|+
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999999887653 223333333 357789999999999999999888999999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHHhcC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVE 1069 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~ 1069 (1419)
||||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|++ |+++|+||. +++++||+++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l- 305 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM- 305 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-
Confidence 999999999999999999999999874 999999999998889999999999985 799999996 5899999999
Q ss_pred CCCCCCCCCCCccccccccChhhh-------h---cccchHHHHHHhcHHHHHHHHHHHhhCCCC---------------
Q 000562 1070 GVPKIRPGYNPAAWMLEVTSPVEE-------S---RLGVDFAEIYRRSNLFQRNRELVESLSKPS--------------- 1124 (1419)
Q Consensus 1070 g~~~~~~~~npA~~~l~v~~~~~~-------~---~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1124 (1419)
|. +||+++|||||++|+++++.. . ....+|++.|++|+.+++..+.+++.....
T Consensus 306 G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 306 GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred CC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 55 699999999999999986431 1 123579999999998887666554321110
Q ss_pred CCCcCCCCCCccCchhHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHhHHHHHH
Q 000562 1125 PSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAV 1204 (1419)
Q Consensus 1125 ~~~~~~~~~~~~~~~~~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~ 1204 (1419)
..++.....+.|..|+|+|+++|++|+++++||||.++.+|+++++++|+++|++||++++ +++++++++|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0011122234688999999999999999999999999999999999999999999999986 5578999999999999
Q ss_pred HHHHHHHhhhhhhhhhhhhhhHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHH
Q 000562 1205 LFIGITNASAVQPVVSVERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMY 1284 (1419)
Q Consensus 1205 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1284 (1419)
++.++.++..+ +.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999887665 44567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCccccc
Q 000562 1285 FTMLYFTFYGMMTTAITPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVK 1364 (1419)
Q Consensus 1285 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~ 1364 (1419)
++.++++++++++++++||..+|+.+++++++++++|+||++|+++||+||+|++|+||++|+++|++.|||++...+|.
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~~~C~ 620 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECS 620 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998776552
Q ss_pred --ccC-----------CC----------CCcCHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000562 1365 --LSD-----------GT----------GSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKF 1416 (1419)
Q Consensus 1365 --~~~-----------~~----------~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~ 1416 (1419)
+|. .. +.+++.+|++..||++++|+|++++++++|+++|+++++++++++++
T Consensus 621 ~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~ 695 (1394)
T TIGR00956 621 QYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG 695 (1394)
T ss_pred ccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 110 00 13467899998999999999999999999999999999999999873
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-91 Score=936.61 Aligned_cols=595 Identities=21% Similarity=0.363 Sum_probs=501.4
Q ss_pred ccccceeEeccceeeeeccccc-----------------cc-cc---ccccceeeeeceeeEEeCCeEEEEEcCCCCChh
Q 000562 811 PFQPLSMAFGNINYFVDVPVEL-----------------KQ-EG---VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKT 869 (1419)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~-~~---~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKT 869 (1419)
+.+.+.+.|+|+++..+....- .+ .+ .+..++.+|+|||+.++|||+++|+||||||||
T Consensus 126 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS 205 (1470)
T PLN03140 126 KLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKT 205 (1470)
T ss_pred CCCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence 3456788899988776521110 00 01 112357899999999999999999999999999
Q ss_pred HHHHhHhCCCCC-ceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCC-------CcHHHH-
Q 000562 870 TLMDVLAGRKTG-GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-------IELETQ- 940 (1419)
Q Consensus 870 TLl~~L~g~~~~-~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~-------~~~~~~- 940 (1419)
|||++|+|+.++ ...+|+|.+||++..+...++.++||+|+|.|++.+||+|+|.|++.++.+.. ...+++
T Consensus 206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~ 285 (1470)
T PLN03140 206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD 285 (1470)
T ss_pred HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence 999999998653 23589999999987544446789999999999999999999999988764311 111111
Q ss_pred -----------------------HHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 941 -----------------------RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 941 -----------------------~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
+..++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+++||||||+
T Consensus 286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs 365 (1470)
T PLN03140 286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST 365 (1470)
T ss_pred ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence 123578999999999999999998899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHHhcCCCCCCCC
Q 000562 998 GLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVPKIRP 1076 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~~~~~ 1076 (1419)
|||+.++..+++.|+++++ .|+|||+++|||+.++++.||++++|++ |+++|+||. +++++||+++ |+ +||+
T Consensus 366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~-G~ivy~G~~----~~~~~yF~~l-Gf-~cP~ 438 (1470)
T PLN03140 366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSE-GQIVYQGPR----DHILEFFESC-GF-KCPE 438 (1470)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeC-ceEEEeCCH----HHHHHHHHHc-CC-CCCC
Confidence 9999999999999999986 4899999999998889999999999985 899999996 6899999999 65 6999
Q ss_pred CCCCccccccccChhhhh------------cccchHHHHHHhcHHHHHHHHHHHhhCCCCCCCcCCCCCCccCchhHHHH
Q 000562 1077 GYNPAAWMLEVTSPVEES------------RLGVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSFANQF 1144 (1419)
Q Consensus 1077 ~~npA~~~l~v~~~~~~~------------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~ 1144 (1419)
++|||||++|+++..... ....+|++.|++|+.+++..+.++.........+.....++|..+++.|+
T Consensus 439 ~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~ 518 (1470)
T PLN03140 439 RKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELL 518 (1470)
T ss_pred CCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHH
Confidence 999999999999864321 12347899999998887665544321111111111112346889999999
Q ss_pred HHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 000562 1145 LACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVSVERY 1224 (1419)
Q Consensus 1145 ~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~~er~ 1224 (1419)
+.|++|+++.+||||.++..|+++.+++|+++|++||+++.+..+..+.+.++|++||+++++.+.++.+ ++.+..||+
T Consensus 519 ~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~-l~~~~~~r~ 597 (1470)
T PLN03140 519 KACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAE-LALMIQRLP 597 (1470)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccc
Confidence 9999999999999999999999999999999999999998765555566778899999998888776544 577889999
Q ss_pred hHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Q 000562 1225 VSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAITPNH 1304 (1419)
Q Consensus 1225 v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~ 1304 (1419)
||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||+||++++++||.|+++++++.++++++++++++++|+.
T Consensus 598 vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~ 677 (1470)
T PLN03140 598 VFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677 (1470)
T ss_pred hhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCcccc-cccCCCCCcCHHHHHHHhhC
Q 000562 1305 NVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLV-KLSDGTGSVPVKHLLKDVFG 1383 (1419)
Q Consensus 1305 ~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~g 1383 (1419)
.+|+.++++++.++++|+||+||+++||+||+|++|+||++|+++|+++|||.+..... .+.+. +..++.++| +.||
T Consensus 678 ~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~~-~~~~G~~~L-~~~g 755 (1470)
T PLN03140 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASDN-STRLGTAVL-NIFD 755 (1470)
T ss_pred HHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCccccCcccCCC-CcccHHHHH-HhcC
Confidence 99999999999999999999999999999999999999999999999999997755321 11121 234455666 6899
Q ss_pred CCcc--chhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000562 1384 FRHD--FLVIAGAMVVAFATIFAMIFAYAIKAFK 1415 (1419)
Q Consensus 1384 ~~~~--~~~~~~~il~~~~~~f~~~~~~~l~~~~ 1415 (1419)
+..+ |.|+++++|++|+++|.+++++++++++
T Consensus 756 ~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 756 VFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9754 6799999999999999999999999987
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-86 Score=825.03 Aligned_cols=568 Identities=24% Similarity=0.432 Sum_probs=504.5
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEECCccCCcccccceEEEEccCCCCCCCcc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
...++|+|+||.++||+++.++||+||||||||++|+|..... ...|+|.+||++.+...-++.++|+.|+|.|+|.+|
T Consensus 126 ~~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lT 205 (1391)
T KOG0065|consen 126 KKIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELT 205 (1391)
T ss_pred ccceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeE
Confidence 3468999999999999999999999999999999999975532 235799999998766444788999999999999999
Q ss_pred HHHHHHHHhhhcCCCC----CcHHHHH-HHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 919 VLESLLFSAWLRLPSE----IELETQR-AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~----~~~~~~~-~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
|+|+|.|+++++.|.. ..+.++. +.++.+++.+||.+|+|+++|+...||+||||||||+||.+++.+++++++|
T Consensus 206 VreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~D 285 (1391)
T KOG0065|consen 206 VRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWD 285 (1391)
T ss_pred EeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeee
Confidence 9999999999998732 2222222 2678999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHHhcCCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEAVEGVP 1072 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~~~g~~ 1072 (1419)
|+|+|||+.++.++.+.||++++. +.|+++++|||+.++++.||+|++|.+ |+++|+||. +++++||+++ |.
T Consensus 286 e~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~e-G~~iy~Gp~----d~~~~yFe~~-Gf- 358 (1391)
T KOG0065|consen 286 EITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSE-GYQIYQGPR----DEVLPYFEDM-GF- 358 (1391)
T ss_pred cccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeec-cceEEeccH----HHHHHHHHhc-Cc-
Confidence 999999999999999999999865 899999999999999999999999996 799999997 5899999999 55
Q ss_pred CCCCCCCCccccccccChhhhhc-----------c-cchHHHHHHhcHHHHHHHHHHHhhCCCCCCCcCCCCCCccCchh
Q 000562 1073 KIRPGYNPAAWMLEVTSPVEESR-----------L-GVDFAEIYRRSNLFQRNRELVESLSKPSPSSKKLNFSTKYSQSF 1140 (1419)
Q Consensus 1073 ~~~~~~npA~~~l~v~~~~~~~~-----------~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1140 (1419)
+||+..++|||+.||++...+.+ . ..+|++.|++|+.+++.+..++........++.....++|..|+
T Consensus 359 ~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~ 438 (1391)
T KOG0065|consen 359 KCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPY 438 (1391)
T ss_pred cCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccH
Confidence 69999999999999999322211 1 15899999999999876655433222222333344457899999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHhHHHHHhHHHHHHHHHHHHHhhhhhhhhh
Q 000562 1141 ANQFLACLRKQNLSYWRNPQYTAVRFFYTVVISLMLGSICWKFGAKRENQQDLFNAMGSMYVAVLFIGITNASAVQPVVS 1220 (1419)
Q Consensus 1141 ~~Q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~al~~G~~f~~~~~~~~~~~~~~~~~g~~f~~~~~~~~~~~~~~~~~~~ 1220 (1419)
|.|+++|+.|.++.+.||..|...++++.+++|+++|++|++... .+..+.+.+.|++||++++..++.+.++ +...
T Consensus 439 ~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi-~~~~ 515 (1391)
T KOG0065|consen 439 WEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEI-ALTF 515 (1391)
T ss_pred HHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHH-HHHH
Confidence 999999999999999999999999999999999999999999983 5677899999999999999888887766 4456
Q ss_pred hhhhhHhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000562 1221 VERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALIYCSIFYSMASFEWTAVKFISYIFFMYFTMLYFTFYGMMTTAI 1300 (1419)
Q Consensus 1221 ~er~v~~rE~~~~~Y~~~~y~~a~~l~e~P~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1300 (1419)
+.|+||+|||...+|+++||.++.+++++|+.++.+++|.+|+||++||.+++++||.|+++++++..+++++.++++++
T Consensus 516 ~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l 595 (1391)
T KOG0065|consen 516 QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASL 595 (1391)
T ss_pred hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccCCCCccchhhhhhhhCHHHHHHHHHHHHhhCCCccccc--ccCC----------
Q 000562 1301 TPNHNVAAIIAAPCYMLWNLFSGFMIAHKRIPIYWRWYYWANPIAWSLYGLQTSQFGDDDKLVK--LSDG---------- 1368 (1419)
Q Consensus 1301 ~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~w~~~isp~~y~~~~l~~~~~~~~~~~~~--~~~~---------- 1368 (1419)
+++..+|+.++++.+.+..+++||+||.++||+||+|++|+||+.|++++++.|||++.+.+|. .|+.
T Consensus 596 ~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c 675 (1391)
T KOG0065|consen 596 SRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVC 675 (1391)
T ss_pred cchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999887764 1211
Q ss_pred --------CCCcCHHHHHHHhhCCCccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 000562 1369 --------TGSVPVKHLLKDVFGFRHDFLVIAGAMVVAFATIFAMIFAYAIKAFKFQ 1417 (1419)
Q Consensus 1369 --------~~~~~~~~~l~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~l~~~~~~ 1417 (1419)
...+.+.+|++..|.|++.|.|++++|++||.++|.+++.+++.++|.-
T Consensus 676 ~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 676 AATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred hhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 0124567899999999999999999999999999999999999999853
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-79 Score=764.99 Aligned_cols=582 Identities=30% Similarity=0.496 Sum_probs=491.5
Q ss_pred CCCcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcceeeeecceEeEeCCeEEEEEcCCCCcHHH
Q 000562 97 LPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTT 176 (1419)
Q Consensus 97 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 176 (1419)
...++++|+|+++++... .+..+++|+||||+++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 346889999999987532 113468999999999999999999999999999
Q ss_pred HHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHh
Q 000562 177 LLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256 (1419)
Q Consensus 177 LL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 256 (1419)
||++|+|+..+...++|+|++||++.+....++.+|||.|+|.+++++||+|||.|+|+++.+... .+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~-------~~----- 139 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSL-------SK----- 139 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCC-------CH-----
Confidence 999999999876678999999998887777789999999999999999999999999998865421 11
Q ss_pred CCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCC
Q 000562 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336 (1419)
Q Consensus 257 ~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsg 336 (1419)
++.+.+++++++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 140 -------------------~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 140 -------------------EEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred -------------------HHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 1234579999999999999999999988899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHH
Q 000562 337 LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1419)
Q Consensus 337 LDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl 416 (1419)
||+.++.++++.|+++|+. |+|+|+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCcc--cccccccCCCCCCCCCCHhHHHHHHH-hchhhhchHHhhcCccccccCCcccccCCCCCCchHHHHHHHHH
Q 000562 417 QEVTSKK--DQEQYWSNPYLPYRYISPGKFAEAFH-SYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFN 493 (1419)
Q Consensus 417 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 493 (1419)
.++.+.. .+..... .........++ .....+... ...... .+.. ........++|.|+..+.+
T Consensus 280 l~l~s~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~-~~~~~~~~s~~~q~~~L~~ 345 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEA--------VRIAKLINKFSQTDNLKKTLE-ALEKSL----STSK-KVEIGTSPSWWTQFKILLK 345 (613)
T ss_pred HHHHccCCCchhHHhH--------HHHHHHhhhccccchhhhhHH-HHhhhc----cccc-ccccccCCcHHHHHHHHHH
Confidence 9988743 1110000 00000000000 000000000 000000 0000 0001116789999999999
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHHHHHHHHHHHHHHHH-HHHHHHhhhhhHHHh
Q 000562 494 WQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFT-EVSMLVAKLPVLYKH 572 (1419)
Q Consensus 494 r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~-~~~~~~~~~~v~~k~ 572 (1419)
|.+....|++.+...|.++.+++++++|++|++.+.+.... ....|++|+.+.+..+..+. .+..+..++++|.||
T Consensus 346 R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~---~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE 422 (613)
T KOG0061|consen 346 RSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGI---QNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRE 422 (613)
T ss_pred HHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 99999999999999999999999999999999986554433 25678888888877666655 578888999999999
Q ss_pred hcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Q 000562 573 RDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANT 652 (1419)
Q Consensus 573 r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~ 652 (1419)
+..++|+.++|++++.+.++|+.++.+++|.+++|||+|+.++..+|+.++++.++...++.+++.+++++.++...|.+
T Consensus 423 ~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~ 502 (613)
T KOG0061|consen 423 TSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATS 502 (613)
T ss_pred HhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcccccCC--CCCccchHHHhhhcCCCCCCc
Q 000562 653 FGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAG--NSNFSLGEAILRQRSLFPESY 730 (1419)
Q Consensus 653 ~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~~--~~~~~~g~~~l~~~~~~~~~~ 730 (1419)
+++++.+.+++++||+++.+.||.||.|+.|+|+..|+++++..|||.+....|... ......+.++++..++...+
T Consensus 503 ~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 581 (613)
T KOG0061|consen 503 LGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGNLCCESTGEDVLKQLGFEDSS- 581 (613)
T ss_pred hHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcCCcccccHHHHHHhcCCcccc-
Confidence 999999999999999999999999999999999999999999999999733333222 34466788899988876654
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000562 731 WYWIGVGAMLGYTLLFNALFTFFLSYLN 758 (1419)
Q Consensus 731 ~~w~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1419)
.|.++.++++++++|.++.++++++..
T Consensus 582 -~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 -FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999998764
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-78 Score=766.10 Aligned_cols=569 Identities=25% Similarity=0.400 Sum_probs=479.6
Q ss_pred CcceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCC
Q 000562 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 145 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 224 (1419)
+.++++|+|+|+.++|||+++|+|||||||||||++|+|+.++....+|+|.+||++++....++.++||+|+|++++++
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34578999999999999999999999999999999999998765456899999999876544567899999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc-
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM- 303 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~- 303 (1419)
||+|||.|+++++.+....+ . +.+.+++++++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~~~-------~------------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTK-------K------------------------EKRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCH-------H------------------------HHHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 99999999988764321110 0 112357889999999999999999864
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++++. ++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~-g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQK-GKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 7899999999999999999999999999999999999999999999999864 788889999999999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcC
Q 000562 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1419)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (1419)
|+++|+|+++++.+||+++|++||++.||+||+.++.+..+.... . .....+++.+.++.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999999875432110 0 011234455556555444443332221
Q ss_pred cccccc---CCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchh
Q 000562 464 PFDRRF---NHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLY 540 (1419)
Q Consensus 464 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~ 540 (1419)
...+.. .........++..+++.|+..+.+|.++..+||+..+..++++.+++++++|++|++.+.+.. +....
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~---~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQK---GVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHH---HHHHH
Confidence 111000 000111224567789999999999999999999999999999999999999999999875432 33456
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHH
Q 000562 541 LGALYFSMVIILFNGF-TEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRF 619 (1419)
Q Consensus 541 ~g~lf~~l~~~~~~~~-~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf 619 (1419)
.|++|+.++..++..+ ..+..+..++++++||+..++|++++|++++.+.++|+.++.+++|.+++|||+|+.+++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 7889998888777765 445667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhh
Q 000562 620 SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEF 699 (1419)
Q Consensus 620 ~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef 699 (1419)
+.+++++++...++.+++.++++++++..+|..++++..+++++++||+++.++||.||+|++|+||+.|+++++++|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-cccCCCC---CccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000562 700 LGHSW-DKKAGNS---NFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYL 757 (1419)
Q Consensus 700 ~~~~~-~~~~~~~---~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~ 757 (1419)
.+..+ .|...+. +...|..+++.+++... ++|.+++++++++++|.++.+++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765 4432111 22358999999888664 459999999999999999999999874
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-77 Score=755.79 Aligned_cols=608 Identities=22% Similarity=0.322 Sum_probs=468.7
Q ss_pred CCCCcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHH--HHHHHHHhcCCCcceeeeecceEeEeCCeEEEEEcCCCCc
Q 000562 96 ELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEA--LLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSG 173 (1419)
Q Consensus 96 ~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsG 173 (1419)
..++++++|+|+++.+.......+... +...... -.+++.. +..++++|+|||++++|||+++|+||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~---~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaG 106 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETR---QIQERTILNGVTGMASPGEILAVLGPSGSG 106 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----cccccccccccccccc---cCCCCeeeeCCEEEEECCEEEEEECCCCCC
Confidence 345799999999999754310111110 0111000 0111111 112457999999999999999999999999
Q ss_pred HHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHH
Q 000562 174 KTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARRE 253 (1419)
Q Consensus 174 KSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e 253 (1419)
|||||++|+|++++. ..+|+|.+||+++... .++.++||+|+|.+++.+||+||+.|++.++.+... .+.
T Consensus 107 KSTLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~-------~~~- 176 (659)
T PLN03211 107 KSTLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSL-------TKQ- 176 (659)
T ss_pred HHHHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCC-------CHH-
Confidence 999999999998763 3589999999987542 245689999999999999999999998765422110 000
Q ss_pred HHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecC
Q 000562 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEI 333 (1419)
Q Consensus 254 ~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEp 333 (1419)
+...+++++++.+||++++||.||++..++|||||||||+||++|+.+|++++||||
T Consensus 177 -----------------------~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEP 233 (659)
T PLN03211 177 -----------------------EKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEP 233 (659)
T ss_pred -----------------------HHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCC
Confidence 112347889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChH
Q 000562 334 SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVA 413 (1419)
Q Consensus 334 tsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~a 413 (1419)
|+|||+.++.++++.|+++++ .++|+|+++||+..+++++||+|++|++|+++|+|+.+++.+||+++|++||++.|||
T Consensus 234 tsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpA 312 (659)
T PLN03211 234 TSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPA 312 (659)
T ss_pred CCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHH
Confidence 999999999999999999986 4778888888888789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcC---cccccc-----CCcc-cccCCCCCCch
Q 000562 414 DFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV---PFDRRF-----NHPA-ALSTSKYGEKR 484 (1419)
Q Consensus 414 dfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~-----~~~~-~~~~~~~~~s~ 484 (1419)
||+.++.+...+.........+ ...++..+.|++.. .+........ +..... ..+. ......+..++
T Consensus 313 Df~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 388 (659)
T PLN03211 313 DFLLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTW 388 (659)
T ss_pred HHHHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCH
Confidence 9999998764321100000011 11122333333211 1111111000 000000 0000 00112244678
Q ss_pred HHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHHHHHHHHHHHH-HHHHHHHHHH
Q 000562 485 SELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILF-NGFTEVSMLV 563 (1419)
Q Consensus 485 ~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~-~~~~~~~~~~ 563 (1419)
+.|+..+++|+++. +|+......|+++.+++|+++|++||+.+ ..+.+...|++||++++.++ ..+..+..+.
T Consensus 389 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~ 462 (659)
T PLN03211 389 FNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFP 462 (659)
T ss_pred HHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999887 78887788999999999999999999874 12345678999998777554 4567778888
Q ss_pred hhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000562 564 AKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSL 643 (1419)
Q Consensus 564 ~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~ 643 (1419)
.++++++|||..++|++++|++++++.++|+.++.+++|.+++|||+|+.+++.+|+.+++++++...++.+++.+++++
T Consensus 463 ~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~ 542 (659)
T PLN03211 463 QERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAA 542 (659)
T ss_pred HhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcc-----cccCCCCCccchHH
Q 000562 644 GRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW-----DKKAGNSNFSLGEA 718 (1419)
Q Consensus 644 ~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~-----~~~~~~~~~~~g~~ 718 (1419)
++++.+|+++++++.+++++++||+++ +||+||+|++|+||+.|+++++++|||.+.+. .|..+......+..
T Consensus 543 ~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~ 620 (659)
T PLN03211 543 IMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCK 620 (659)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCc
Confidence 999999999999999999999999997 79999999999999999999999999976432 34221110011111
Q ss_pred HhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000562 719 ILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLN 758 (1419)
Q Consensus 719 ~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~ 758 (1419)
++....+. ....|.+++++++++++|+++.+++|++.+
T Consensus 621 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 621 FVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred cchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 22222222 234788999999999999999999997654
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-72 Score=705.60 Aligned_cols=777 Identities=21% Similarity=0.271 Sum_probs=413.2
Q ss_pred cCCCcceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCC
Q 000562 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD 218 (1419)
Q Consensus 142 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 218 (1419)
++.+++..||+|+|+.|++|+.++|+|||||||||+++.|.+.++|. +|+|.++|+++.++.. +.++|.|+|+|
T Consensus 360 YPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QeP 436 (1228)
T KOG0055|consen 360 YPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEP 436 (1228)
T ss_pred CCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeech
Confidence 44556778999999999999999999999999999999999999987 9999999999988765 47899999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccc
Q 000562 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1419)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1419)
.+| ..||+|||.|+.. ....+...++++.. ...+. +..|++.+||.
T Consensus 437 vlF-~~tI~eNI~~G~~----dat~~~i~~a~k~a--------------------------na~~f---i~~lp~g~~T~ 482 (1228)
T KOG0055|consen 437 VLF-ATTIRENIRYGKP----DATREEIEEAAKAA--------------------------NAHDF---ILKLPDGYDTL 482 (1228)
T ss_pred hhh-cccHHHHHhcCCC----cccHHHHHHHHHHc--------------------------cHHHH---HHhhHHhhccc
Confidence 755 6799999998632 11112222222111 01122 34588899999
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
||+++. .|||||||||+|||||+.+|+||+||||||+||+.+...+.+.|++..+ |+|||+ +.|..+.+-+ +|+|
T Consensus 483 vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTiv-VaHRLStIrn-aD~I 557 (1228)
T KOG0055|consen 483 VGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIV-VAHRLSTIRN-ADKI 557 (1228)
T ss_pred ccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEE-Eeeehhhhhc-cCEE
Confidence 998776 4999999999999999999999999999999999999999999998754 667776 6777788777 9999
Q ss_pred EEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHH--HHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhc
Q 000562 379 ILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL--QEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKN 456 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl--~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (1419)
++|++|+|++.|+++|++.. -| --++.. |+....++. ..+... . ..+.....+.+.
T Consensus 558 ~v~~~G~IvE~G~h~ELi~~---~G-------~Y~~lv~~Q~~~~~~~~-~~~~~~-~------~~~~~~s~~~s~---- 615 (1228)
T KOG0055|consen 558 AVMEEGKIVEQGTHDELIAL---GG-------IYSSLVRLQELEKAAED-EEEEES-L------KEERSRSLKSSS---- 615 (1228)
T ss_pred EEEECCEEEEecCHHHHHhc---cc-------hHHHHHHHHhhhhhhhc-cccccc-h------hhhhhhcccccc----
Confidence 99999999999999999852 01 112221 121111110 000000 0 000000000000
Q ss_pred hHHhhcCccccccC---CcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHH-------HHHHHHhh--
Q 000562 457 LSEELAVPFDRRFN---HPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIV-------ALITMTVF-- 524 (1419)
Q Consensus 457 l~~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~-------ali~g~vf-- 524 (1419)
.............. .+.. ....... ..+..+..+.|-+...+.++.+.+...+..++. +++++.++
T Consensus 616 ~~~~~~~~~~~~~~~~~~~~~-e~~~~~~-~~~~~~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~ 693 (1228)
T KOG0055|consen 616 SSPSLSRGSNRSNLLSVKPEG-EDPEEPV-SEEDEKVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEA 693 (1228)
T ss_pred ccccccCCccccccccccccc-ccccccc-ccccccccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 00000000000000 0000 0000000 000012223333334444444333333322222 22222222
Q ss_pred -cccCCCCccccccchhhHHHHHHHHHHHH--HHHHHHHHHH--------hhhhhHHH--hhcccccchhhHHHHHHHHH
Q 000562 525 -FRTTMHHKTIDDGGLYLGALYFSMVIILF--NGFTEVSMLV--------AKLPVLYK--HRDLHFYPSWVYTIPSWALS 591 (1419)
Q Consensus 525 -~~~~~~~~~~~~~~~~~g~lf~~l~~~~~--~~~~~~~~~~--------~~~~v~~k--~r~~~~y~~~ay~l~~~~~~ 591 (1419)
+..+.+ ...........+|.++....+ +.+....... .|...|.+ ..+..||.---.. +.....
T Consensus 694 f~~~~~~--~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~R 770 (1228)
T KOG0055|consen 694 FYPPDDD--ELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSR 770 (1228)
T ss_pred HhCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHH
Confidence 211111 111111112222222221111 0000111111 11111111 0111122111000 000000
Q ss_pred hhHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HHHHHh
Q 000562 592 IPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAML------VVMALG 665 (1419)
Q Consensus 592 iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l------~~~l~~ 665 (1419)
+- .=.++.....-+-+ ..+...++++.-.+.+|...++-+.+ +++.++
T Consensus 771 La-----------------~Da~~vr~~v~~rl---------~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~ 824 (1228)
T KOG0055|consen 771 LA-----------------TDASNVRAAVGDRL---------SLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILS 824 (1228)
T ss_pred Hh-----------------cchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000000000000 01111111111222233333322222 222222
Q ss_pred hccccCCCcchhHHHHHhhcH---HHHHHHHHHHhhhcCCcccccCCCCCccchHHHhhhcCC---CC----CCcchHHH
Q 000562 666 GFIISRDSIPKWWIWGFWVSP---LMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSL---FP----ESYWYWIG 735 (1419)
Q Consensus 666 Gf~i~~~~ip~~~~w~~~isp---~~ya~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~---~~----~~~~~w~~ 735 (1419)
++.-.+ ++.-.+. -.|......++|-..+--+. ...+..+.+.+.+.- .+ .....|.+
T Consensus 825 ~~~~~~--------~~~~~~~~~~~~~~ea~~iA~eai~NIrTV----~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~g 892 (1228)
T KOG0055|consen 825 GYLQKK--------FLKGFSKDDKKAYEEASKIAIEAVSNIRTV----AALCAEEKFMELYKEELEKPRKSSFKRGLISG 892 (1228)
T ss_pred HHHHHH--------HHhhhhHHHHHHHHHHHHHHHHHHHhHHHH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221000 0000000 00111111122211110000 001111111111000 00 00112444
Q ss_pred HHHHHHHHHHH---HHHHHHHHHhcCCCCCc-cccc-chhhhh--hH---HhhhcCchh------hHHHHHhhhcccccc
Q 000562 736 VGAMLGYTLLF---NALFTFFLSYLNPLGKQ-QAVV-SKKELQ--ER---DRRRKGENV------VIELREYLQRSSSLN 799 (1419)
Q Consensus 736 ~g~ll~~~~~f---~~l~~~~l~~~~~~~~~-~~~~-~~~~~~--~~---~~~~~~~~~------~~~~~~~~~~~~~~~ 799 (1419)
++.-+...++| .+.++++......-... ..+. ...... .. ....-.++. ...+-....+.+..+
T Consensus 893 l~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~ 972 (1228)
T KOG0055|consen 893 LGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTID 972 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCC
Confidence 44333332222 22222222222110000 0000 000000 00 000000000 000000001111111
Q ss_pred ccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCC
Q 000562 800 GKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 800 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~ 879 (1419)
. ....+...+...-.+.++|+++.++.. ...++|+|+|+++++|+.+||+|||||||||.+.+|-+..
T Consensus 973 ~--~~~~~~~~~~~~G~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY 1040 (1228)
T KOG0055|consen 973 P--DSTSGGKLPNVKGDIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY 1040 (1228)
T ss_pred C--CCCCCCccccceeEEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 1 011222233344568899998887642 4568999999999999999999999999999999998765
Q ss_pred CCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHH------
Q 000562 880 TGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMEL------ 950 (1419)
Q Consensus 880 ~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~------ 950 (1419)
. +..|.|.|||++++. +..|+.+|.|.|+|.++. -|++||+.|+. . +.+.++ +.++.+.
T Consensus 1041 d--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-~----~vs~~e----Ii~Aak~ANaH~F 1108 (1228)
T KOG0055|consen 1041 D--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-E----EVSEEE----IIEAAKLANAHNF 1108 (1228)
T ss_pred C--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-C----CCCHHH----HHHHHHHhhhHHH
Confidence 5 679999999998754 567889999999999985 59999999981 1 133222 2233332
Q ss_pred -cCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000562 951 -VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1419)
Q Consensus 951 -l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1419)
.+|.+-.|+.+|..|. +||||||||++|||||++||+||+|||+||.||+++.+.|+++|.+. ..|+|.|+++|++|
T Consensus 1109 I~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a-~~gRT~IvIAHRLS 1186 (1228)
T KOG0055|consen 1109 ISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA-MEGRTTIVIAHRLS 1186 (1228)
T ss_pred HhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh-hcCCcEEEEecchh
Confidence 2455667888887665 69999999999999999999999999999999999999999999995 46999999999986
Q ss_pred HHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1030 IDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1030 ~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
....+|.|.|+++ |+++..|.-
T Consensus 1187 --TIqnaD~I~Vi~~-G~VvE~GtH 1208 (1228)
T KOG0055|consen 1187 --TIQNADVIAVLKN-GKVVEQGTH 1208 (1228)
T ss_pred --hhhcCCEEEEEEC-CEEEecccH
Confidence 6788999999985 899999984
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-72 Score=720.63 Aligned_cols=745 Identities=21% Similarity=0.275 Sum_probs=409.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
.+.|+|||+.|++|++++|+||.|||||+||.+|.|+++. .+|+|.++| .+|||||++|++ +.|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~---~sG~v~v~g----------siaYv~Q~pWI~-ngTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK---LSGSVAVNG----------SVAYVPQQPWIQ-NGTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc---ccceEEEcC----------eEEEeccccHhh-CCcHH
Confidence 3489999999999999999999999999999999999975 499999999 589999999954 67999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
|||.|+..+. .++|+.+.++|.+++|..+.|++|. |.||++++ +|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~Lp~GD~--------------------------------TeIGErGi-nL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEILPFGDL--------------------------------TEIGERGI-NL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhhcCCCCc--------------------------------ceecCCcc-CC
Confidence 9999998764 6789999999999999988888874 99998776 79
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 387 (1419)
||||||||++|||+++++||++||+|.|++|+++..+|++.+-. ..++++|+|.++| .-+....+|.|++|++|+|.
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~--~~L~~KT~ILVTH-ql~~L~~ad~Iivl~~G~I~ 721 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIR--GLLRGKTVILVTH-QLQFLPHADQIIVLKDGKIV 721 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHH--hhhcCCEEEEEeC-chhhhhhCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999999986663 2345566666766 66778899999999999999
Q ss_pred EEcChhhHHH---HHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCc
Q 000562 388 YQGPRVSVLD---FFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 464 (1419)
Q Consensus 388 ~~G~~~~~~~---~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 464 (1419)
..|+.+|+.+ +|+++ ..+....++.+ .....+.......+. +. +.........+. ..
T Consensus 722 ~~Gty~el~~~~~~~~~l-------------~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~--~~ 781 (1381)
T KOG0054|consen 722 ESGTYEELLKSGGDFAEL-------------AHEEESEQEEE---ASEKDLESGESSRES-ES-RSLESLSSEEEK--SK 781 (1381)
T ss_pred cccCHHHHHhcchhHHHH-------------hhccchhhccc---cccccccccccccch-hh-hhhhhhcccccc--cc
Confidence 9999999973 23322 00000000000 000000000000000 00 000000000000 00
Q ss_pred cccccCCcccccC---CCCCCchHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHHHHHHHHh-hcccCCCCc--cc---
Q 000562 465 FDRRFNHPAALST---SKYGEKRSELLKTSFNWQLLLMKRNSFIYV-FKFIQLLIVALITMTV-FFRTTMHHK--TI--- 534 (1419)
Q Consensus 465 ~~~~~~~~~~~~~---~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~-~~~~~~~i~ali~g~v-f~~~~~~~~--~~--- 534 (1419)
.. +........ ...+. ......+.+........... .-+.+.....+.++.- |...+.+.. ..
T Consensus 782 ~~--~~~~~~~~~~ee~~~G~-----v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 782 DE--KEEEDKLVQEEERETGK-----VSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT 854 (1381)
T ss_pred cc--cchhhHHHHHHHHhcCE-----eeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence 00 000000000 00000 00111122222111111111 1112222222222332 222221111 01
Q ss_pred cccchhhHHHHHHHHHHHH-HHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccc
Q 000562 535 DDGGLYLGALYFSMVIILF-NGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYD 613 (1419)
Q Consensus 535 ~~~~~~~g~lf~~l~~~~~-~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~ 613 (1419)
.+...|.+.+.+..+...+ ..+..+......... .+.-...+++....+-..++...|.+.+
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~a-S~~Lh~~ml~~Ilrapm~FFdtTP~GRI---------------- 917 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKA-SRKLHDKLLNSILRAPMSFFDTTPTGRI---------------- 917 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcchhcCCCCccch----------------
Confidence 1233343332222111111 111111111100000 0000001111111111222223333322
Q ss_pred cchHHHHHHHHH-----HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HHHhhccccCCCcchhHHHHHhh---
Q 000562 614 PNVVRFSRQLLL-----YFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVV-MALGGFIISRDSIPKWWIWGFWV--- 684 (1419)
Q Consensus 614 ~~~~rf~~~~l~-----~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~-~l~~Gf~i~~~~ip~~~~w~~~i--- 684 (1419)
.+||.++.-. .+....+...+..+++.+. +++. ..+.++++. .+...| ++.-.||+
T Consensus 918 --LNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~---vi~~-~~P~fli~~~pl~v~~---------~~~~~~Y~~ts 982 (1381)
T KOG0054|consen 918 --LNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV---VISY-VTPWFLIAIIPLGVIY---------YFVQRYYLATS 982 (1381)
T ss_pred --hhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH---HhhH-HhHHHHHHHHHHHHHH---------HHHHHHHHHHh
Confidence 3455554321 1222222222222222211 1111 111111111 111110 11112222
Q ss_pred -----------cHHHHHHHHHHHhhhcCCcccccCCCCCccchHHHhhhcCCCCCCc------chHHH------------
Q 000562 685 -----------SPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESY------WYWIG------------ 735 (1419)
Q Consensus 685 -----------sp~~ya~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~------~~w~~------------ 735 (1419)
||++-.+.... .-.......+.....-.......+.....+ ..|.+
T Consensus 983 ReLkRLesitRSPi~sh~~Etl-----~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~ 1057 (1381)
T KOG0054|consen 983 RELKRLESITRSPIYSHFSETL-----QGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVL 1057 (1381)
T ss_pred HHHHHhhhcccchHHHhHHHHh-----cCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322111110 000000000000000000000001110000 01332
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCchhhHHHHHhhhcccc
Q 000562 736 ------------------VGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSS 797 (1419)
Q Consensus 736 ------------------~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1419)
+|..+.|++.++....++++-....+... ++.++..+ ......+.+......
T Consensus 1058 ~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m--~SVERv~e--------Y~~~~~E~p~~~~~~ 1127 (1381)
T KOG0054|consen 1058 IAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNM--VSVERVLE--------YTDIPSEAPLEIEES 1127 (1381)
T ss_pred HHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhhhHHHH--------HhcCCCCCCCCCcCC
Confidence 22222222222222222222221111110 01111000 000000000000111
Q ss_pred ccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhC
Q 000562 798 LNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g 877 (1419)
.+++.||..| .+.|+|++..+. ++...+|||||++|+|||++||+|++|||||||.++|.+
T Consensus 1128 ~pp~~WP~~G--------~I~f~~~~~RYr-----------p~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFR 1188 (1381)
T KOG0054|consen 1128 RPPPSWPSKG--------EIEFEDLSLRYR-----------PNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFR 1188 (1381)
T ss_pred CCCCCCCCCC--------eEEEEEeEEEeC-----------CCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHH
Confidence 1334476665 456777655442 123579999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 000562 878 RKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954 (1419)
Q Consensus 878 ~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~ 954 (1419)
... +.+|+|.|||.++.+ ...|++++.+||||.++.+ |+|.|| ++..+..++.+++++|..+|.
T Consensus 1189 l~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NL----------DPf~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1189 LVE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNL----------DPFDEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred hcC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecC-cccccc----------CcccccCHHHHHHHHHHhChH
Confidence 876 468999999998765 5678899999999999865 888877 334445566788999988886
Q ss_pred cccC-------CcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Q 000562 955 SLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1419)
Q Consensus 955 ~~~~-------~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~ 1027 (1419)
+.-. ..+. ++..++|.||||.+|+||||+++++||+|||+|+++|++|...|+++||+-. +++|||++.|+
T Consensus 1256 ~~v~~~p~~Ld~~v~-egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHR 1333 (1381)
T KOG0054|consen 1256 DVVSSLPGGLDSEVS-EGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHR 1333 (1381)
T ss_pred HHHhhCCcCCCceec-CCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeec
Confidence 5443 2232 3456899999999999999999999999999999999999999999999965 58999999999
Q ss_pred CCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1028 PSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1028 ~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
.+ ....+|||+||++ |+++.+|++.
T Consensus 1334 l~--TVmd~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1334 LN--TVMDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred cc--hhhhcCeEEEeeC-CeEeecCChH
Confidence 76 5567899999996 7999999863
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-69 Score=722.05 Aligned_cols=209 Identities=29% Similarity=0.430 Sum_probs=183.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCccH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
+.+|+|||+.|++||++||+||||||||||+++|+|... +.+|+|.++|+++.. ...++.+|||+|++.+++.+||
T Consensus 1952 ~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~--ptsG~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv 2029 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTG 2029 (2272)
T ss_pred ceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECcchHHHHhhhEEEEeccccCCCCCCH
Confidence 579999999999999999999999999999999999876 468999999988642 2345679999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|+|.+.+.++. ...++.++.++++++.++|.+.+|..++ .|||||||||+||+||+.+|+||||||||+||
T Consensus 2030 ~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGL 2101 (2272)
T TIGR01257 2030 REHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGM 2101 (2272)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 999998877653 2233445678899999999988887754 79999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHH
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~ 1066 (1419)
|+.+++.+++.|++++++|+|||+|+|+++ ++...|||+++|.+ |++++.|+. +++...|.
T Consensus 2102 Dp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~-G~i~~~Gs~----q~Lk~~~g 2162 (2272)
T TIGR01257 2102 DPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVK-GAFQCLGTI----QHLKSKFG 2162 (2272)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH----HHHHHHhC
Confidence 999999999999999878999999999986 57788999999985 899999986 45666554
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-66 Score=711.14 Aligned_cols=210 Identities=22% Similarity=0.290 Sum_probs=175.3
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~--p~~G~I~IDG~dI 1303 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE--LERGRILIDGCDI 1303 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECCEec
Confidence 5788888776631 12369999999999999999999999999999999999876 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------ccCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~~~ 965 (1419)
.+ ..+|+.++||||++.++.+ |+||||.+.. +.+ ++.++++++..++.+ -.|+.+|..
T Consensus 1304 ~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~t----deei~~Al~~a~l~~~I~~lp~GLdt~Vge~- 1371 (1622)
T PLN03130 1304 SKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHN----DADLWESLERAHLKDVIRRNSLGLDAEVSEA- 1371 (1622)
T ss_pred ccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCC----HHHHHHHHHHcCcHHHHHhCccccCccccCC-
Confidence 54 4677899999999999876 9999996531 112 334677777776643 345566653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
..+||||||||++|||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1372 G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~- 1447 (1622)
T PLN03130 1372 GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA- 1447 (1622)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC-
Confidence 34799999999999999999999999999999999999999999999975 5899999999975 5677999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 1448 G~IvE~Gt~ 1456 (1622)
T PLN03130 1448 GRVVEFDTP 1456 (1622)
T ss_pred CEEEEeCCH
Confidence 899999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-65 Score=702.76 Aligned_cols=210 Identities=21% Similarity=0.287 Sum_probs=175.2
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.|+|+++.++. +...+|+|+|++|+|||++||+||||||||||+++|.|..+ +.+|+|.|||.++
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~--p~~G~I~IdG~di 1300 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE--LEKGRIMIDDCDV 1300 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCceEEECCEEh
Confidence 5778888776631 22469999999999999999999999999999999999876 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------cCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~~ 965 (1419)
.+ ..+++.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+. .|+.+|..
T Consensus 1301 ~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1368 (1495)
T PLN03232 1301 AKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG- 1368 (1495)
T ss_pred hhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC-
Confidence 53 5678899999999999875 9999996421 122 2346777777777543 35556643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1369 G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~- 1444 (1495)
T PLN03232 1369 GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS- 1444 (1495)
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999874 5899999999975 5677999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 1445 G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 GQVLEYDSP 1453 (1495)
T ss_pred CEEEEECCH
Confidence 899999985
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-65 Score=604.35 Aligned_cols=474 Identities=26% Similarity=0.324 Sum_probs=357.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC-CCeeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1419)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++|++|++.
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999876 4568999999997654432 268999999973
Q ss_pred --CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccc
Q 000562 220 --QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1419)
Q Consensus 220 --~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1419)
+-|-+||.+.|.-..+.++... ..+...++.++|+.+||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 4566888888865544432111 11234457889999999986544
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
+.+.+.|||||||||.||+||+.+|++|++|||||+||+.++.+|++.|+++.++ .++.++.++|+..-+.+++|+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e-~g~a~l~ITHDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRE-LGMAVLFITHDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHH-cCcEEEEEcCCHHHHHHhcCe
Confidence 5688899999999999999999999999999999999999999999999999876 467788899999999999999
Q ss_pred EEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhch
Q 000562 378 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (1419)
|++|++|++++.|+.+++.+- | ..||.. . +
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p-------------------------~hpYT~---~--------------L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------P-------------------------QHPYTR---G--------------L 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------c-------------------------CCcccH---H--------------H
Confidence 999999999999999988531 1 111100 0 0
Q ss_pred HHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCcccccc
Q 000562 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 537 (1419)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~ 537 (1419)
... .|.. +.. ...
T Consensus 255 l~a--~p~~-----------------------------------------------------------~~~---~~~--- 267 (539)
T COG1123 255 LAA--VPRL-----------------------------------------------------------GDE---KII--- 267 (539)
T ss_pred Hhh--CCCc-----------------------------------------------------------ccc---ccc---
Confidence 000 0000 000 000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchH
Q 000562 538 GLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 617 (1419)
Q Consensus 538 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~ 617 (1419)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHh
Q 000562 618 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVN 697 (1419)
Q Consensus 618 rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~n 697 (1419)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhcCCcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHh
Q 000562 698 EFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDR 777 (1419)
Q Consensus 698 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 777 (1419)
+.
T Consensus 268 ------~~------------------------------------------------------------------------ 269 (539)
T COG1123 268 ------RL------------------------------------------------------------------------ 269 (539)
T ss_pred ------cc------------------------------------------------------------------------
Confidence 00
Q ss_pred hhcCchhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeE
Q 000562 778 RRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVL 857 (1419)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 857 (1419)
.. ... .. ...-++.+|++-.+..+..+. ....+...+++||||.+++||+
T Consensus 270 ---------~~---------~~~---~~-------~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~ 319 (539)
T COG1123 270 ---------PR---------RGP---LR-------AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGET 319 (539)
T ss_pred ---------cc---------ccc---cc-------cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCE
Confidence 00 000 00 000111222211111110000 0002346789999999999999
Q ss_pred EEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC--C---cccccceEEEEccCC--CCCCCccHHHHHHHHhhhc
Q 000562 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK--R---QETFARISGYCEQND--IHSPGLTVLESLLFSAWLR 930 (1419)
Q Consensus 858 ~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr 930 (1419)
+||+|+||||||||.++|+|..+ +.+|.|.++|.+. . ....++.+-+++|++ .+.|.+||++.+.-.....
T Consensus 320 lglVGeSGsGKSTlar~i~gL~~--P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~ 397 (539)
T COG1123 320 LGLVGESGSGKSTLARILAGLLP--PSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIH 397 (539)
T ss_pred EEEECCCCCCHHHHHHHHhCCCC--CCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhh
Confidence 99999999999999999999887 4689999999762 1 123445566777765 5779999999998765444
Q ss_pred CCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH
Q 000562 931 LPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1419)
Q Consensus 931 ~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~ 1009 (1419)
... ...++++++.++++.++|.. ..+.. +.+||||||||++|||||+.+|++|++|||||.||+..++.|.+
T Consensus 398 ~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~Vln 470 (539)
T COG1123 398 GGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470 (539)
T ss_pred ccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHH
Confidence 332 24556678999999999985 34433 56899999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1010 TVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1010 ~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
.|+++.++ |.|.|+++||.+. +...|||++||.+ |+++..||.
T Consensus 471 Ll~~lq~e~g~t~lfISHDl~v-V~~i~drv~vm~~-G~iVE~G~~ 514 (539)
T COG1123 471 LLKDLQEELGLTYLFISHDLAV-VRYIADRVAVMYD-GRIVEEGPT 514 (539)
T ss_pred HHHHHHHHhCCEEEEEeCCHHH-HHhhCceEEEEEC-CeEEEeCCH
Confidence 99999865 9999999999863 6678999999985 899999975
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-64 Score=689.07 Aligned_cols=210 Identities=20% Similarity=0.241 Sum_probs=175.3
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1284 ~I~f~nVsf~Y~~-----------~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~dI 1350 (1522)
T TIGR00957 1284 RVEFRNYCLRYRE-----------DLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLNI 1350 (1522)
T ss_pred cEEEEEEEEEeCC-----------CCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEEc
Confidence 5788888777642 12359999999999999999999999999999999999876 5689999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------cCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~~ 965 (1419)
.+ ..+|+.++||||++.++.+ |+||||.... +.+ ++.++++++..++.+. .|+.+|..
T Consensus 1351 ~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~- 1418 (1522)
T TIGR00957 1351 AKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG- 1418 (1522)
T ss_pred cccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC-
Confidence 54 4678889999999999976 9999995211 122 2346777887777543 35566653
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
..+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|++
T Consensus 1419 G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld~- 1494 (1522)
T TIGR00957 1419 GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLDK- 1494 (1522)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999865 5899999999975 5678999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 1495 G~IvE~G~~ 1503 (1522)
T TIGR00957 1495 GEVAEFGAP 1503 (1522)
T ss_pred CEEEEECCH
Confidence 899999986
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-64 Score=677.95 Aligned_cols=216 Identities=20% Similarity=0.325 Sum_probs=176.2
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-------------
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------------- 882 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------------- 882 (1419)
.+.|+|+++.++.. +...+|+|+|++|+||+++||+||||||||||+++|.|...+.
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 57888888876421 1246999999999999999999999999999999999976531
Q ss_pred ---------------------------------------eEEEEEEECCccCCc---ccccceEEEEccCCCCCCCccHH
Q 000562 883 ---------------------------------------IIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 883 ---------------------------------------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
+.+|+|.+||.++.+ ..+++.+|||+|++.++. .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 148999999998653 567889999999998884 7999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
|||.|+. + +.+. +.++++++..++.+ -.|+.+|..| ..||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G-~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPYG-KSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCCC-CcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999862 1 2222 23566666665543 4477888544 469999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhcCeEEEEecC---CE-EEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG---GE-LIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g---G~-~~~~G~~ 1054 (1419)
||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|+|++|++| |+ ++..|+.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 9999999999999999999986 36899999999975 56889999999973 66 5578874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=619.69 Aligned_cols=460 Identities=22% Similarity=0.330 Sum_probs=345.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|||+++++|++++|+|||||||||||++|+|.+++. +.+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 36999999999999999999999999999999999998751 248999999998764332 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++......+. .+ . .+....++++++.+||++..++.++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-MD------Y------------------------DAMYLRAQKLLAQLKLDINPATPVG--- 142 (506)
T ss_pred CcHHHHhhhcccccccCC-cC------H------------------------HHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999988643210000 00 0 0012246778999999877776654
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|+|++|++
T Consensus 143 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvi~~tH~~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 143 --NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH--GIACIYISHKLNEVKAISDTICVIRD 218 (506)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHHhcCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998652 55677789999999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcC
Q 000562 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1419)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (1419)
|++++.|+.+++.. .+ ..+.+
T Consensus 219 G~i~~~~~~~~~~~---------------~~-----------------------------~~~~~--------------- 239 (506)
T PRK13549 219 GRHIGTRPAAGMTE---------------DD-----------------------------IITMM--------------- 239 (506)
T ss_pred CEEeeecccccCCH---------------HH-----------------------------HHHHh---------------
Confidence 99998886433200 00 00000
Q ss_pred ccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHH
Q 000562 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1419)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1419)
.... ..
T Consensus 240 -------------------------------------------------------------~~~~-----~~-------- 245 (506)
T PRK13549 240 -------------------------------------------------------------VGRE-----LT-------- 245 (506)
T ss_pred -------------------------------------------------------------hCcC-----cc--------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHH
Q 000562 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1419)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~ 623 (1419)
+
T Consensus 246 --------------------------------------------------------------------------~----- 246 (506)
T PRK13549 246 --------------------------------------------------------------------------A----- 246 (506)
T ss_pred --------------------------------------------------------------------------c-----
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCc
Q 000562 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1419)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~ 703 (1419)
..|
T Consensus 247 -------------------------------------------------~~~---------------------------- 249 (506)
T PRK13549 247 -------------------------------------------------LYP---------------------------- 249 (506)
T ss_pred -------------------------------------------------ccc----------------------------
Confidence 000
Q ss_pred ccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCch
Q 000562 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1419)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1419)
. .
T Consensus 250 ------~------------------------------------------------~------------------------ 251 (506)
T PRK13549 250 ------R------------------------------------------------E------------------------ 251 (506)
T ss_pred ------c------------------------------------------------c------------------------
Confidence 0 0
Q ss_pred hhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcC
Q 000562 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1419)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~ 863 (1419)
. .. . + ...+.++|+++..+. .+++.+|+|+|++|++||++||+|+
T Consensus 252 ---~-------~~-------~--~------~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~G~ 296 (506)
T PRK13549 252 ---P-------HT-------I--G------EVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIAGL 296 (506)
T ss_pred ---c-------cC-------C--C------CceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEeCC
Confidence 0 00 0 0 001233333322100 0124589999999999999999999
Q ss_pred CCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCC---CCCCCccHHHHHHHHhhhcCCC--C
Q 000562 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLPS--E 934 (1419)
Q Consensus 864 nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~~--~ 934 (1419)
||||||||+++|+|..++ +.+|+|.++|.++.. ...++.+||++|++ .+++.+||.|++.+........ .
T Consensus 297 NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 375 (506)
T PRK13549 297 VGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSR 375 (506)
T ss_pred CCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcc
Confidence 999999999999998641 148999999986532 12345689999985 4678899999998753211110 0
Q ss_pred CcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHH
Q 000562 935 IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1419)
Q Consensus 935 ~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1013 (1419)
....+..+.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|++
T Consensus 376 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 450 (506)
T PRK13549 376 IDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450 (506)
T ss_pred cChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence 12233445688999999996 4566554 47999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 1014 l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
++++|+|||+++||++ ++.+.||++++|.+ |+++..|+..+
T Consensus 451 l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 451 LVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 9888999999999986 57788999999985 79999887654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-63 Score=615.60 Aligned_cols=450 Identities=20% Similarity=0.316 Sum_probs=343.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 36999999999999999999999999999999999999876 9999999988754321 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.|+..........+ . .+....++++++.+||++..|..++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~---~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 140 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRID---W---------------------------KKMYAEADKLLARLNLRFSSDKLVG--- 140 (501)
T ss_pred CcHHHHhhhccccccccCccC---H---------------------------HHHHHHHHHHHHHcCCCCCccCchh---
Confidence 999999988643210000000 0 0012246778999999887776665
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.++||+|++|++
T Consensus 141 --~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--~~tvii~sHd~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 141 --ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ--GRGIVYISHRLKEIFEICDDVTVFRD 216 (501)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 59999999999999999999999999999999999999999999998653 55677789999999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcC
Q 000562 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1419)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (1419)
|+++..|+.+++.. .+..+.+
T Consensus 217 G~i~~~~~~~~~~~--------------------------------------------~~~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE--------------------------------------------DSLIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH--------------------------------------------HHHHHHh---------------
Confidence 99998775432100 0000000
Q ss_pred ccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHH
Q 000562 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1419)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1419)
+... .
T Consensus 238 -------------------------------------------------------------~~~~-----~--------- 242 (501)
T PRK10762 238 -------------------------------------------------------------VGRK-----L--------- 242 (501)
T ss_pred -------------------------------------------------------------cCCC-----c---------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHH
Q 000562 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1419)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~ 623 (1419)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCc
Q 000562 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1419)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~ 703 (1419)
+
T Consensus 243 ---------------------------------------------------~---------------------------- 243 (501)
T PRK10762 243 ---------------------------------------------------E---------------------------- 243 (501)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCch
Q 000562 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1419)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1419)
. . .+
T Consensus 244 -----------------------~-~----------------------------~~------------------------ 247 (501)
T PRK10762 244 -----------------------D-Q----------------------------YP------------------------ 247 (501)
T ss_pred -----------------------c-c----------------------------cc------------------------
Confidence 0 0 00
Q ss_pred hhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcC
Q 000562 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1419)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~ 863 (1419)
.. . .+. .+..+.++|++ ..+|+|+|+++++||++||+||
T Consensus 248 ---~~------~-------~~~-------~~~~l~~~~l~------------------~~~l~~vsl~i~~Ge~~~liG~ 286 (501)
T PRK10762 248 ---RL------D-------KAP-------GEVRLKVDNLS------------------GPGVNDVSFTLRKGEILGVSGL 286 (501)
T ss_pred ---cc------c-------cCC-------CCcEEEEeCcc------------------cCCcccceEEEcCCcEEEEecC
Confidence 00 0 000 00012333332 1268899999999999999999
Q ss_pred CCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCC---CCCCCccHHHHHHHHhhhcCC---C
Q 000562 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAWLRLP---S 933 (1419)
Q Consensus 864 nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~---~ 933 (1419)
||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++ .+++.+||+|++.+....... .
T Consensus 287 NGsGKSTLl~~l~G~~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 364 (501)
T PRK10762 287 MGAGRTELMKVLYGALP--RTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGG 364 (501)
T ss_pred CCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccccc
Confidence 99999999999999865 4589999999875321 2345699999995 467889999999875321100 0
Q ss_pred CCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH
Q 000562 934 EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1419)
Q Consensus 934 ~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1419)
....++.++.++++++.+++. +..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+
T Consensus 365 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 439 (501)
T PRK10762 365 SLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLIN 439 (501)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHH
Confidence 012223345688999999994 5666654 4799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 1013 ~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
+++++|.|||+++|++. ++.+.+|++++|++ |+++..|+..+
T Consensus 440 ~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 440 QFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 99888999999999986 57788999999985 79999988754
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-63 Score=618.56 Aligned_cols=458 Identities=19% Similarity=0.291 Sum_probs=344.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 35999999999999999999999999999999999999775 9999999998765432 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++..... ..+.. ... + ..+....++++++.+||++..|+.++
T Consensus 95 ~tv~e~l~~~~~~~~--~~~~~-~~~----------~--------------~~~~~~~~~~~l~~~gl~~~~~~~~~--- 144 (510)
T PRK09700 95 LTVLENLYIGRHLTK--KVCGV-NII----------D--------------WREMRVRAAMMLLRVGLKVDLDEKVA--- 144 (510)
T ss_pred CcHHHHhhhcccccc--ccccc-ccc----------C--------------HHHHHHHHHHHHHHcCCCCCcccchh---
Confidence 999999987532100 00000 000 0 00112346778999999887776665
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|+|++|++
T Consensus 145 --~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsHd~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 145 --NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE--GTAIVYISHKLAEIRRICDRYTVMKD 220 (510)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 59999999999999999999999999999999999999999999998753 45677799999999999999999999
Q ss_pred CeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcC
Q 000562 384 GQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAV 463 (1419)
Q Consensus 384 G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 463 (1419)
|++++.|+++++.. .+ ..+..
T Consensus 221 G~i~~~g~~~~~~~---------------~~-----------------------------~~~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DD-----------------------------IVRLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH---------------HH-----------------------------HHHHh---------------
Confidence 99999886543210 00 00000
Q ss_pred ccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHH
Q 000562 464 PFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGA 543 (1419)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~ 543 (1419)
.... . .
T Consensus 242 -------------------------------------------------------------~~~~-----~-~------- 247 (510)
T PRK09700 242 -------------------------------------------------------------VGRE-----L-Q------- 247 (510)
T ss_pred -------------------------------------------------------------cCCC-----c-c-------
Confidence 0000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHH
Q 000562 544 LYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQL 623 (1419)
Q Consensus 544 lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~ 623 (1419)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCc
Q 000562 624 LLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHS 703 (1419)
Q Consensus 624 l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~ 703 (1419)
+ .
T Consensus 248 ----------------------------------------------~---------------------------~----- 249 (510)
T PRK09700 248 ----------------------------------------------N---------------------------R----- 249 (510)
T ss_pred ----------------------------------------------c---------------------------c-----
Confidence 0 0
Q ss_pred ccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCch
Q 000562 704 WDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGEN 783 (1419)
Q Consensus 704 ~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1419)
. +. . .+
T Consensus 250 ~----~~--------------~--------------------------------~~------------------------ 255 (510)
T PRK09700 250 F----NA--------------M--------------------------------KE------------------------ 255 (510)
T ss_pred c----cc--------------c--------------------------------cc------------------------
Confidence 0 00 0 00
Q ss_pred hhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcC
Q 000562 784 VVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGV 863 (1419)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~ 863 (1419)
. .. .+. .+..+.++|++.. + ..+|+|+|+++++||+++|+||
T Consensus 256 ---~-------~~------~~~-------~~~~l~~~~l~~~-------------~--~~~l~~isl~i~~Ge~~~l~G~ 297 (510)
T PRK09700 256 ---N-------VS------NLA-------HETVFEVRNVTSR-------------D--RKKVRDISFSVCRGEILGFAGL 297 (510)
T ss_pred ---c-------cc------cCC-------CCcEEEEeCcccc-------------C--CCcccceeEEEcCCcEEEEECC
Confidence 0 00 000 0001334444321 1 1379999999999999999999
Q ss_pred CCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccC---CCCCCCccHHHHHHHHhhhc---CCC
Q 000562 864 SGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQN---DIHSPGLTVLESLLFSAWLR---LPS 933 (1419)
Q Consensus 864 nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---d~~~~~lTv~E~l~f~a~lr---~~~ 933 (1419)
||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|+ ..+++.+||+|++.+....+ ...
T Consensus 298 NGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~ 375 (510)
T PRK09700 298 VGSGRTELMNCLFGVDK--RAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKG 375 (510)
T ss_pred CCCCHHHHHHHHhCCCc--CCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccc
Confidence 99999999999999865 458999999986532 1234568999998 45778999999998753211 000
Q ss_pred --C-CcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHH
Q 000562 934 --E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1419)
Q Consensus 934 --~-~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~ 1009 (1419)
. ......++.++++++.+++. +..+..+ ..|||||||||.||++|+.+|+||+|||||+|||+.++..+++
T Consensus 376 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~ 450 (510)
T PRK09700 376 AMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYK 450 (510)
T ss_pred cccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHH
Confidence 0 11222335678899999996 6666654 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1010 ~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
.|++++++|.|||+++||+. .+.+.+|++++|++ |+++..++.
T Consensus 451 ~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 451 VMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 99999888999999999986 57788999999986 788888765
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-62 Score=625.42 Aligned_cols=488 Identities=20% Similarity=0.242 Sum_probs=348.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCC----------CCC-------CCce
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----------EFV-------PPRT 210 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~----------~~~-------~~~~ 210 (1419)
.++|+|||+++++||+++|+||||||||||+++|+|.++|. +|+|.++|..+. ... .++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999775 899999986431 111 1246
Q ss_pred EEEEccCC--CCCCCCCHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHH
Q 000562 211 SAYVSQQD--WQVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1419)
Q Consensus 211 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~ 287 (1419)
++||+|++ .+++.+||+||+.++.+.. +.. + .+...+++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------R------------------------EEAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHH
Confidence 99999997 5778899999999875431 110 0 011234678899
Q ss_pred HhCCcc---cccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEE
Q 000562 288 ILGLDT---CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1419)
Q Consensus 288 ~lgL~~---~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i 364 (1419)
.+||++ ..+.. +..|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.++++++.. +++|+.+
T Consensus 152 ~~gL~~~~~~~~~~-----~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-g~tvi~i 225 (623)
T PRK10261 152 QVRIPEAQTILSRY-----PHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-SMGVIFI 225 (623)
T ss_pred HCCCCChhhHHhCC-----CccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-CCEEEEE
Confidence 999964 23444 45699999999999999999999999999999999999999999999987643 4567779
Q ss_pred ecChhHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHH
Q 000562 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKF 444 (1419)
Q Consensus 365 ~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 444 (1419)
+|+..++.+++|+|++|++|++++.|+++++.. .|.+....+++..
T Consensus 226 tHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~-------------------------- 271 (623)
T PRK10261 226 THDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAA-------------------------- 271 (623)
T ss_pred cCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhc--------------------------
Confidence 999999999999999999999999998766521 0000000000000
Q ss_pred HHHHHhchhhhchHHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhh
Q 000562 445 AEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVF 524 (1419)
Q Consensus 445 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf 524 (1419)
.+
T Consensus 272 ------------------~~------------------------------------------------------------ 273 (623)
T PRK10261 272 ------------------VP------------------------------------------------------------ 273 (623)
T ss_pred ------------------cC------------------------------------------------------------
Confidence 00
Q ss_pred cccCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHh
Q 000562 525 FRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVA 604 (1419)
Q Consensus 525 ~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~ 604 (1419)
+.. .... +. .|
T Consensus 274 -~~~----~~~~------------------------------------~~-----------------~~----------- 284 (623)
T PRK10261 274 -QLG----AMKG------------------------------------LD-----------------YP----------- 284 (623)
T ss_pred -ccc----cccc------------------------------------cc-----------------CC-----------
Confidence 000 0000 00 00
Q ss_pred hhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhh
Q 000562 605 VTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWV 684 (1419)
Q Consensus 605 i~Y~~~G~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~i 684 (1419)
. ..|.
T Consensus 285 ------------------------------------------------------------------~-~~~~-------- 289 (623)
T PRK10261 285 ------------------------------------------------------------------R-RFPL-------- 289 (623)
T ss_pred ------------------------------------------------------------------c-cccc--------
Confidence 0 0000
Q ss_pred cHHHHHHHHHHHhhhcCCcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q 000562 685 SPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQ 764 (1419)
Q Consensus 685 sp~~ya~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~ 764 (1419)
. ... .+. ...
T Consensus 290 ---------------~---~~~-~~~-------------------------------------------------~~~-- 299 (623)
T PRK10261 290 ---------------I---SLE-HPA-------------------------------------------------KQE-- 299 (623)
T ss_pred ---------------c---ccc-ccc-------------------------------------------------ccC--
Confidence 0 000 000 000
Q ss_pred cccchhhhhhHHhhhcCchhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceee
Q 000562 765 AVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQL 844 (1419)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 844 (1419)
. . ... . . .+. + ..-+..+|+++........ .........+
T Consensus 300 ---~--------------~---~~~-----~----~--~~~-~------~~~L~~~~l~~~y~~~~~~--~~~~~~~~~~ 339 (623)
T PRK10261 300 ---P--------------P---IEQ-----D----T--VVD-G------EPILQVRNLVTRFPLRSGL--LNRVTREVHA 339 (623)
T ss_pred ---c--------------c---ccc-----c----c--ccC-C------CceEEEeeeEEEEcCCCcc--ccccCCceEE
Confidence 0 0 000 0 0 000 0 0124555555443210000 0000012469
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCC--CCCCC
Q 000562 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHSPG 916 (1419)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d--~~~~~ 916 (1419)
|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+++.
T Consensus 340 l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~ 417 (623)
T PRK10261 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPR 417 (623)
T ss_pred EeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCC
Confidence 999999999999999999999999999999999876 458999999986532 12356799999986 57889
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+||.|++.+....+. ....++.++.+.++++.++|. +..+.. +..|||||||||+|||+|+.+|+|||||||
T Consensus 418 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllDEP 490 (623)
T PRK10261 418 QTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIADEA 490 (623)
T ss_pred CCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999987654321 112334456788999999995 455554 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+|||+.++..+++.|++++++ |.|||++|||++ .+...+|++++|.+ |++++.|+..
T Consensus 491 ts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 491 VSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999765 899999999986 47788999999985 7999999853
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-62 Score=664.65 Aligned_cols=210 Identities=21% Similarity=0.261 Sum_probs=175.6
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|... +.+|+|.+||.++
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~di 1374 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGREI 1374 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEc
Confidence 5778888776631 22459999999999999999999999999999999999876 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------cCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~~ 965 (1419)
.. ..+++.+|||||++.++.. |++|||... .+.+ ++.++++++..++.+. .|+.+|..
T Consensus 1375 ~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~- 1442 (1560)
T PTZ00243 1375 GAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG- 1442 (1560)
T ss_pred ccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC-
Confidence 53 5678899999999999875 999999531 1222 3457888888887653 35566653
Q ss_pred CCCCCHHHHHHHHHHHHHhhC-CCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEec
Q 000562 966 INGLSTEQRKRLTIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~-p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1044 (1419)
..+||||||||++|||||+++ |+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1443 G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVLd~ 1519 (1560)
T PTZ00243 1443 GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLH--TVAQYDKIIVMDH 1519 (1560)
T ss_pred cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHH--HHHhCCEEEEEEC
Confidence 357999999999999999996 89999999999999999999999999864 4899999999964 6788999999985
Q ss_pred CCEEEEeCCC
Q 000562 1045 GGELIYAGPL 1054 (1419)
Q Consensus 1045 gG~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 1520 -G~VvE~Gt~ 1528 (1560)
T PTZ00243 1520 -GAVAEMGSP 1528 (1560)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=612.33 Aligned_cols=464 Identities=22% Similarity=0.300 Sum_probs=342.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCCCC-------CceEEEEccCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQD 218 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 218 (1419)
+++|+|+|+.+++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999998752 1258999999998754321 24699999996
Q ss_pred C--CCCCCCHHHHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc--
Q 000562 219 W--QVAEMTVRETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-- 293 (1419)
Q Consensus 219 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~-- 293 (1419)
. +.+.+||+|++.+..... +.. + .+...+++++++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------R------------------------EAARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHCCCCChH
Confidence 4 567789999987643211 100 0 011234678899999975
Q ss_pred -cccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHH
Q 000562 294 -CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372 (1419)
Q Consensus 294 -~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~ 372 (1419)
..|+.+ ..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++++.. +.+|+.++|+..++.
T Consensus 148 ~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~ 221 (529)
T PRK15134 148 KRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVR 221 (529)
T ss_pred HHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhc-CCeEEEEcCcHHHHH
Confidence 235544 4699999999999999999999999999999999999999999999987543 456777899999999
Q ss_pred hhcCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhch
Q 000562 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYH 452 (1419)
Q Consensus 373 ~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (1419)
+++|+|++|++|++++.|+++++... |.. ...
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~---------------------------------~~~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH---------------------------------PYT------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC---------------------------------HHH-------
Confidence 99999999999999999876554210 000 000
Q ss_pred hhhchHHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCc
Q 000562 453 TGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHK 532 (1419)
Q Consensus 453 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~ 532 (1419)
+.+. ...
T Consensus 254 -----------------------------------------~~~~----------------------------~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKLL----------------------------NSE---- 260 (529)
T ss_pred -----------------------------------------HHHH----------------------------HhC----
Confidence 0000 000
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccc
Q 000562 533 TIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY 612 (1419)
Q Consensus 533 ~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~ 612 (1419)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHH
Q 000562 613 DPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQN 692 (1419)
Q Consensus 613 ~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~ 692 (1419)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHhhhcCCcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhh
Q 000562 693 AASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKEL 772 (1419)
Q Consensus 693 al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~ 772 (1419)
. . .+.
T Consensus 262 -----------------~-----~-----------------------------------------~~~------------ 266 (529)
T PRK15134 262 -----------------S-----G-----------------------------------------DPV------------ 266 (529)
T ss_pred -----------------c-----c-----------------------------------------ccc------------
Confidence 0 0 000
Q ss_pred hhHHhhhcCchhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEE
Q 000562 773 QERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAF 852 (1419)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 852 (1419)
. .. . . .. ..+.++|+++..+...+. .+...+.+.+|+|||+++
T Consensus 267 --------------~-------~~---~---~-~~-------~~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl~i 309 (529)
T PRK15134 267 --------------P-------LP---E---P-AS-------PLLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISFTL 309 (529)
T ss_pred --------------c-------cC---C---C-CC-------CcccccCcEEEeecCccc--cccccccceeeecceeEE
Confidence 0 00 0 0 00 002223333222100000 000001246999999999
Q ss_pred eCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCC--CCCCCccHHHHHH
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--IHSPGLTVLESLL 924 (1419)
Q Consensus 853 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d--~~~~~lTv~E~l~ 924 (1419)
++||++||+||||||||||+++|+|..+ .+|+|.++|.++... .+++.+||++|++ .+++.+||+|++.
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~ 386 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIE 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHH
Confidence 9999999999999999999999999863 479999999865321 1345689999996 4778899999998
Q ss_pred HHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHH
Q 000562 925 FSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1419)
Q Consensus 925 f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~ 1003 (1419)
+....+.. .....+.++.++++++.+++. +..+.. +..|||||||||+||++|+.+|++|+|||||+|||+.+
T Consensus 387 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~ 460 (529)
T PRK15134 387 EGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTV 460 (529)
T ss_pred HHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHH
Confidence 86543211 122233446688999999996 355554 35799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1004 ~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+..+++.|++++++ |+|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 461 ~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 461 QAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 99999999999865 899999999986 46778999999985 799998874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=609.54 Aligned_cols=452 Identities=20% Similarity=0.278 Sum_probs=341.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 224 (1419)
++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC
Confidence 5999999999999999999999999999999999999776 9999999988764332 24689999999889999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.|+... .+ +....++++++.+||++..+..++
T Consensus 102 tv~e~l~~~~~~------~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (510)
T PRK15439 102 SVKENILFGLPK------RQ--------------------------------ASMQKMKQLLAALGCQLDLDSSAG---- 139 (510)
T ss_pred cHHHHhhccccc------ch--------------------------------HHHHHHHHHHHHcCCCccccCChh----
Confidence 999999875310 00 001235678999999887776665
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+|++|++|
T Consensus 140 -~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiivtHd~~~~~~~~d~i~~l~~G 216 (510)
T PRK15439 140 -SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ--GVGIVFISHKLPEIRQLADRISVMRDG 216 (510)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998753 556777999999999999999999999
Q ss_pred eEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCc
Q 000562 385 QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 464 (1419)
Q Consensus 385 ~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 464 (1419)
++++.|+.+++... +.. +.+.
T Consensus 217 ~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~--------------- 237 (510)
T PRK15439 217 TIALSGKTADLSTD---------------DII-----------------------------QAIT--------------- 237 (510)
T ss_pred EEEEecChHHcCHH---------------HHH-----------------------------HHHh---------------
Confidence 99999876543110 000 0000
Q ss_pred cccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHHH
Q 000562 465 FDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544 (1419)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~l 544 (1419)
.... ......
T Consensus 238 -------------------------------------------------------------~~~~-~~~~~~-------- 247 (510)
T PRK15439 238 -------------------------------------------------------------PAAR-EKSLSA-------- 247 (510)
T ss_pred -------------------------------------------------------------Cccc-cccccc--------
Confidence 0000 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHH
Q 000562 545 YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLL 624 (1419)
Q Consensus 545 f~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l 624 (1419)
..
T Consensus 248 ----------------------------~~-------------------------------------------------- 249 (510)
T PRK15439 248 ----------------------------SQ-------------------------------------------------- 249 (510)
T ss_pred ----------------------------cc--------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcc
Q 000562 625 LYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 704 (1419)
Q Consensus 625 ~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~ 704 (1419)
..
T Consensus 250 ------------------------------------------------------------------------------~~ 251 (510)
T PRK15439 250 ------------------------------------------------------------------------------KL 251 (510)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCchh
Q 000562 705 DKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV 784 (1419)
Q Consensus 705 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1419)
. ..+ +
T Consensus 252 ~-----------------~~~---------------------------------~------------------------- 256 (510)
T PRK15439 252 W-----------------LEL---------------------------------P------------------------- 256 (510)
T ss_pred c-----------------ccc---------------------------------c-------------------------
Confidence 0 000 0
Q ss_pred hHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCC
Q 000562 785 VIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVS 864 (1419)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~n 864 (1419)
. ... . .+. + +..+..+|++. .+|+|||+++++||++||+|||
T Consensus 257 --~-------~~~-~---~~~-~------~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~G~N 298 (510)
T PRK15439 257 --G-------NRR-Q---QAA-G------APVLTVEDLTG------------------EGFRNISLEVRAGEILGLAGVV 298 (510)
T ss_pred --c-------ccc-c---cCC-C------CceEEEeCCCC------------------CCccceeEEEcCCcEEEEECCC
Confidence 0 000 0 000 0 00133344320 1488999999999999999999
Q ss_pred CCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCC---CCCCCccHHHHHHHHhhhcCCCCCcH
Q 000562 865 GAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAWLRLPSEIEL 937 (1419)
Q Consensus 865 GaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~~~~~~ 937 (1419)
|||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+.+.....
T Consensus 299 GsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~ 376 (510)
T PRK15439 299 GAGRTELAETLYGLRP--ARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKP 376 (510)
T ss_pred CCCHHHHHHHHcCCCC--CCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccCh
Confidence 9999999999999865 4589999999865321 1235689999984 47788999999864211111110111
Q ss_pred HHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHh
Q 000562 938 ETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1419)
Q Consensus 938 ~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~ 1016 (1419)
...++.++++++.+++. +..+..+ +.|||||||||+||++|+.+|+||||||||+|||+.+...+.+.|+++++
T Consensus 377 ~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~ 451 (510)
T PRK15439 377 ARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451 (510)
T ss_pred HHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh
Confidence 22345678999999996 5666654 47999999999999999999999999999999999999999999999988
Q ss_pred cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1017 ~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+|.|||+++||++ ++.+.+|++++|++ |+++..|..+
T Consensus 452 ~g~tiIivsHd~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 488 (510)
T PRK15439 452 QNVAVLFISSDLE-EIEQMADRVLVMHQ-GEISGALTGA 488 (510)
T ss_pred CCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 8999999999986 57788999999985 7999888654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-61 Score=654.69 Aligned_cols=209 Identities=20% Similarity=0.253 Sum_probs=175.2
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~di 1282 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVSW 1282 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEc
Confidence 5778888777642 23569999999999999999999999999999999999864 479999999987
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------cCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~~ 965 (1419)
.+ ..+++.++||||++.++++ |+||||.... .. .++.++++++.++|.+. .|+.+|..
T Consensus 1283 ~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~----tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~- 1350 (1490)
T TIGR01271 1283 NSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QW----SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG- 1350 (1490)
T ss_pred ccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CC----CHHHHHHHHHHCCCHHHHHhCccccccccccC-
Confidence 54 4577899999999999976 9999994311 11 23457888888887543 35566643
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
..+||||||||+||||||+++|+||+||||||+||..+...|++.|++.. +++|||+++|+++ ....||+|++|++
T Consensus 1351 G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~- 1426 (1490)
T TIGR01271 1351 GYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG- 1426 (1490)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999865 4799999999975 5677999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|++
T Consensus 1427 G~ivE~g~p 1435 (1490)
T TIGR01271 1427 SSVKQYDSI 1435 (1490)
T ss_pred CEEEEeCCH
Confidence 799999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-62 Score=606.27 Aligned_cols=460 Identities=20% Similarity=0.304 Sum_probs=341.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|||+++++|++++|+|||||||||||++|+|.+++. +.+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 36999999999999999999999999999999999998652 248999999998765332 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccc-cccccCc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-DTLVGDE 302 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~vg~~ 302 (1419)
+||+||+.++..........+ . .+...+++.+++.+||++.. ++.+
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 139 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRMA------Y------------------------NAMYLRAKNLLRELQLDADNVTRPV--- 139 (500)
T ss_pred CcHHHHHHhhccccccccccC------H------------------------HHHHHHHHHHHHHcCCCCCcccCch---
Confidence 999999988643210000000 0 00122467789999998654 3444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
..|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||+|++|+
T Consensus 140 --~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tviiitHd~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 140 --GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAH--GVACVYISHKLNEVKAVCDTICVIR 215 (500)
T ss_pred --hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCcHHHHHHhCCEEEEEe
Confidence 469999999999999999999999999999999999999999999998753 5567779999999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhc
Q 000562 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (1419)
+|++++.|+.+++.. ....+.
T Consensus 216 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~--------------- 236 (500)
T TIGR02633 216 DGQHVATKDMSTMSE--------------------------------------------DDIITM--------------- 236 (500)
T ss_pred CCeEeeecCcccCCH--------------------------------------------HHHHHH---------------
Confidence 999987764321000 000000
Q ss_pred CccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhH
Q 000562 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1419)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g 542 (1419)
+...
T Consensus 237 -------------------------------------------------------------~~~~--------------- 240 (500)
T TIGR02633 237 -------------------------------------------------------------MVGR--------------- 240 (500)
T ss_pred -------------------------------------------------------------HhCc---------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHH
Q 000562 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1419)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~ 622 (1419)
+
T Consensus 241 --------------------------------------------------~----------------------------- 241 (500)
T TIGR02633 241 --------------------------------------------------E----------------------------- 241 (500)
T ss_pred --------------------------------------------------c-----------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCC
Q 000562 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1419)
Q Consensus 623 ~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~ 702 (1419)
.+
T Consensus 242 ---------------------------------------------------~~--------------------------- 243 (500)
T TIGR02633 242 ---------------------------------------------------IT--------------------------- 243 (500)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred cccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCc
Q 000562 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1419)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1419)
. .. +
T Consensus 244 -------~--------------~~--------------------------------~----------------------- 247 (500)
T TIGR02633 244 -------S--------------LY--------------------------------P----------------------- 247 (500)
T ss_pred -------c--------------cc--------------------------------c-----------------------
Confidence 0 00 0
Q ss_pred hhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEc
Q 000562 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1419)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G 862 (1419)
. .. .+.. +..+.++|+++.... .+++.+|+|+|+++++||++||+|
T Consensus 248 ----~-------~~------~~~~-------~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l~G 293 (500)
T TIGR02633 248 ----H-------EP------HEIG-------DVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGVAG 293 (500)
T ss_pred ----c-------cc------cCCC-------CceEEEeCCcccccc----------cccccccccceeEEeCCcEEEEeC
Confidence 0 00 0000 001233343322100 012458999999999999999999
Q ss_pred CCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCC---CCCCCccHHHHHHHHhh--hcCCC
Q 000562 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAW--LRLPS 933 (1419)
Q Consensus 863 ~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~--lr~~~ 933 (1419)
||||||||||++|+|..++ +.+|+|.++|.++.. ...++.+||++|+. .+++.+||+|++.++.. .....
T Consensus 294 ~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~ 372 (500)
T TIGR02633 294 LVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKM 372 (500)
T ss_pred CCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCC
Confidence 9999999999999998652 147999999987532 12356789999995 47889999999987532 11000
Q ss_pred CCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHH
Q 000562 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1419)
Q Consensus 934 ~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~ 1012 (1419)
.......++.++++++.+++.+ ..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+++.|+
T Consensus 373 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~ 447 (500)
T TIGR02633 373 RIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLIN 447 (500)
T ss_pred cCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHH
Confidence 1122333456889999999964 455544 4799999999999999999999999999999999999999999999
Q ss_pred HHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1013 ~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+++++|.|||+++||++ ++.+.+|++++|.+ |+++..++..
T Consensus 448 ~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 488 (500)
T TIGR02633 448 QLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVNH 488 (500)
T ss_pred HHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEccc
Confidence 99888999999999986 57788999999985 7888877653
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-62 Score=605.41 Aligned_cols=450 Identities=20% Similarity=0.290 Sum_probs=340.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC----CCceEEEEccCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~l 224 (1419)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++.+++.+
T Consensus 18 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (501)
T PRK11288 18 KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM 94 (501)
T ss_pred EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCCC
Confidence 5999999999999999999999999999999999998775 999999998875432 135799999999889999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++......+. .+ . .+....++.+++.+||++..+..++
T Consensus 95 tv~~~l~~~~~~~~~~~-~~---~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 139 (501)
T PRK11288 95 TVAENLYLGQLPHKGGI-VN---R---------------------------RLLNYEAREQLEHLGVDIDPDTPLK---- 139 (501)
T ss_pred CHHHHHHhcccccccCC-CC---H---------------------------HHHHHHHHHHHHHcCCCCCcCCchh----
Confidence 99999988532100000 00 0 0012246778999999876665554
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+|||+|+.+|++++|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.+++|+|++|++|
T Consensus 140 -~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tiiiitHd~~~~~~~~d~i~~l~~G 216 (501)
T PRK11288 140 -YLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE--GRVILYVSHRMEEIFALCDAITVFKDG 216 (501)
T ss_pred -hCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998653 566777999999999999999999999
Q ss_pred eEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCc
Q 000562 385 QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVP 464 (1419)
Q Consensus 385 ~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 464 (1419)
+++..++..+. .+.++..+.
T Consensus 217 ~i~~~~~~~~~-------------------------------------------~~~~~~~~~----------------- 236 (501)
T PRK11288 217 RYVATFDDMAQ-------------------------------------------VDRDQLVQA----------------- 236 (501)
T ss_pred EEEeecCcccc-------------------------------------------CCHHHHHHH-----------------
Confidence 99865421000 000000000
Q ss_pred cccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhHHH
Q 000562 465 FDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGAL 544 (1419)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~l 544 (1419)
+.... .
T Consensus 237 -----------------------------------------------------------~~~~~-----~---------- 242 (501)
T PRK11288 237 -----------------------------------------------------------MVGRE-----I---------- 242 (501)
T ss_pred -----------------------------------------------------------hcCCC-----c----------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHH
Q 000562 545 YFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLL 624 (1419)
Q Consensus 545 f~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l 624 (1419)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcc
Q 000562 625 LYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSW 704 (1419)
Q Consensus 625 ~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~ 704 (1419)
.
T Consensus 243 --------------------------------------------------~----------------------------- 243 (501)
T PRK11288 243 --------------------------------------------------G----------------------------- 243 (501)
T ss_pred --------------------------------------------------c-----------------------------
Confidence 0
Q ss_pred cccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCchh
Q 000562 705 DKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENV 784 (1419)
Q Consensus 705 ~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 784 (1419)
. . ..
T Consensus 244 -----~--------------~--------------------------------~~------------------------- 247 (501)
T PRK11288 244 -----D--------------I--------------------------------YG------------------------- 247 (501)
T ss_pred -----c--------------c--------------------------------cc-------------------------
Confidence 0 0 00
Q ss_pred hHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCC
Q 000562 785 VIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVS 864 (1419)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~n 864 (1419)
.. .. +. .+..+.++|+++ ..+++|+|+++++||++||+|||
T Consensus 248 --~~------~~-------~~-------~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~iiG~N 288 (501)
T PRK11288 248 --YR------PR-------PL-------GEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLFGLV 288 (501)
T ss_pred --cc------cc-------CC-------CCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEEcCC
Confidence 00 00 00 001233333321 13789999999999999999999
Q ss_pred CCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCC---CCCCCccHHHHHHHHhhhcC-CCC--
Q 000562 865 GAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRL-PSE-- 934 (1419)
Q Consensus 865 GaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~-~~~-- 934 (1419)
|||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++.+...... +..
T Consensus 289 GsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 366 (501)
T PRK11288 289 GAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCL 366 (501)
T ss_pred CCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccc
Confidence 9999999999999865 468999999986532 12345789999985 47888999999987532211 000
Q ss_pred CcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHH
Q 000562 935 IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1419)
Q Consensus 935 ~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1013 (1419)
......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|++|||||||+|||+.+...+++.|++
T Consensus 367 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 441 (501)
T PRK11288 367 INNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE 441 (501)
T ss_pred cChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence 01222345678899999994 5666654 47999999999999999999999999999999999999999999999
Q ss_pred HHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 1014 IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 1014 l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
++++|.|||+++||++ ++.+.+|++++|.+ |++++.|..++
T Consensus 442 l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 442 LAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 9888999999999986 57788999999985 79999998764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=607.27 Aligned_cols=445 Identities=22% Similarity=0.275 Sum_probs=337.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCc--CCCCCeeeEEEECC-----------------------ccC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNG-----------------------HGF 202 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~I~~~G-----------------------~~~ 202 (1419)
+++|+|+|+.+.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 36999999999999999999999999999999999986 454 89999972 211
Q ss_pred C-------CC------CCCceEEEEccC-CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHH
Q 000562 203 K-------EF------VPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268 (1419)
Q Consensus 203 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~ 268 (1419)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~--------------------------- 142 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEG--------------------------- 142 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCH---------------------------
Confidence 0 00 013568999997 677888999999988643221100
Q ss_pred HHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHH
Q 000562 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY 348 (1419)
Q Consensus 269 ~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~ 348 (1419)
.+...+++++++.+||++..+..+ +.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.
T Consensus 143 -------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 143 -------KEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred -------HHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 001234678899999987766555 46999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCccccccc
Q 000562 349 LKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428 (1419)
Q Consensus 349 l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~ 428 (1419)
|+++++.. +++|++++|+...+.++||+|++|++|++++.|+++++.+.+.. .
T Consensus 211 l~~l~~~~-g~tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~----------------~---------- 263 (520)
T TIGR03269 211 LEEAVKAS-GISMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME----------------G---------- 263 (520)
T ss_pred HHHHHHhc-CcEEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh----------------h----------
Confidence 99986543 45677799999999999999999999999988765432110000 0
Q ss_pred ccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHH
Q 000562 429 WSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVF 508 (1419)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~ 508 (1419)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHH
Q 000562 509 KFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSW 588 (1419)
Q Consensus 509 ~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~ 588 (1419)
.. .
T Consensus 264 ------------------~~----~------------------------------------------------------- 266 (520)
T TIGR03269 264 ------------------VS----E------------------------------------------------------- 266 (520)
T ss_pred ------------------ch----h-------------------------------------------------------
Confidence 00 0
Q ss_pred HHHhhHHHHHHHHHHhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhcc
Q 000562 589 ALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFI 668 (1419)
Q Consensus 589 ~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~ 668 (1419)
T Consensus 267 -------------------------------------------------------------------------------- 266 (520)
T TIGR03269 267 -------------------------------------------------------------------------------- 266 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCCcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHH
Q 000562 669 ISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNA 748 (1419)
Q Consensus 669 i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~ 748 (1419)
+
T Consensus 267 -----~-------------------------------------------------------------------------- 267 (520)
T TIGR03269 267 -----V-------------------------------------------------------------------------- 267 (520)
T ss_pred -----h--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHhcCCCCCcccccchhhhhhHHhhhcCchhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeec
Q 000562 749 LFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDV 828 (1419)
Q Consensus 749 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 828 (1419)
... . . . +. ....+.++|+++.++.
T Consensus 268 ------------~~~----~------------------~-------~--------~~-------~~~~l~~~~l~~~~~~ 291 (520)
T TIGR03269 268 ------------EKE----C------------------E-------V--------EV-------GEPIIKVRNVSKRYIS 291 (520)
T ss_pred ------------ccc----c------------------c-------c--------CC-------CCceEEEeccEEEecc
Confidence 000 0 0 0 00 0001333444433310
Q ss_pred ccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEEC-Ccc---CCc------c
Q 000562 829 PVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYP---KRQ------E 898 (1419)
Q Consensus 829 ~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~-g~~---~~~------~ 898 (1419)
. ..+.+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++ |.+ ... .
T Consensus 292 ~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~~g~~~~~~~~~~~~~~~ 361 (520)
T TIGR03269 292 V--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE--PTSGEVNVRVGDEWVDMTKPGPDGRG 361 (520)
T ss_pred C--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEEecCCccccccccchhhHH
Confidence 0 0122469999999999999999999999999999999999865 458999996 532 111 1
Q ss_pred cccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-----ccCCcccCCCCCCCCHHH
Q 000562 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-----LSGALIGLPGINGLSTEQ 973 (1419)
Q Consensus 899 ~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-----~~~~~~g~~~~~~lSgGq 973 (1419)
..++.+||++|++.+++.+||+|++.+...+. ...+..++.++++++.++|.+ ..+.. +..|||||
T Consensus 362 ~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSgGq 432 (520)
T TIGR03269 362 RAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSEGE 432 (520)
T ss_pred HHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCHHH
Confidence 23456899999988889999999998754321 122223456788999999975 33443 35799999
Q ss_pred HHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 974 rqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
||||+||++|+.+|+||+|||||+|||+.+...+++.|++++++ |.|||+++|+++ .+.+.+|++++|++ |+++..|
T Consensus 433 ~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~g 510 (520)
T TIGR03269 433 RHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVKIG 510 (520)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 99999999999999999999999999999999999999999765 899999999986 47788999999985 7999888
Q ss_pred CC
Q 000562 1053 PL 1054 (1419)
Q Consensus 1053 ~~ 1054 (1419)
+.
T Consensus 511 ~~ 512 (520)
T TIGR03269 511 DP 512 (520)
T ss_pred CH
Confidence 74
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-60 Score=593.32 Aligned_cols=450 Identities=18% Similarity=0.261 Sum_probs=337.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999998775 9999999998754321 3569999999988899
Q ss_pred CCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 224 MTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 224 lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
+||+||+.++.. ..+.. .+ . .+....++.+++.+||++..++.++
T Consensus 88 ~tv~~~l~~~~~~~~~~~--~~---~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 133 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF--VD---Q---------------------------DKMYRDTKAIFDELDIDIDPRAKVA-- 133 (491)
T ss_pred CCHHHHhhcccccccccc--cC---H---------------------------HHHHHHHHHHHHHcCCCCCccCchh--
Confidence 999999987532 10000 00 0 0011246778999999877776654
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+.+++.++||+|++|+
T Consensus 134 ---~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~--g~tvii~tH~~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 134 ---TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKER--GCGIVYISHKMEEIFQLCDEITILR 208 (491)
T ss_pred ---hCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998653 4567778999999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhc
Q 000562 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (1419)
+|+++..|+.+++.. .+..+.+
T Consensus 209 ~G~i~~~~~~~~~~~--------------------------------------------~~~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM--------------------------------------------DKIIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH--------------------------------------------HHHHHHH--------------
Confidence 999998876432100 0000000
Q ss_pred CccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhH
Q 000562 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1419)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g 542 (1419)
....
T Consensus 231 --------------------------------------------------------------~~~~-------------- 234 (491)
T PRK10982 231 --------------------------------------------------------------VGRS-------------- 234 (491)
T ss_pred --------------------------------------------------------------hCCC--------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHH
Q 000562 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1419)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~ 622 (1419)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCC
Q 000562 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1419)
Q Consensus 623 ~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~ 702 (1419)
..
T Consensus 235 ---------------------------------------------------~~--------------------------- 236 (491)
T PRK10982 235 ---------------------------------------------------LT--------------------------- 236 (491)
T ss_pred ---------------------------------------------------cc---------------------------
Confidence 00
Q ss_pred cccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCc
Q 000562 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1419)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1419)
.... .
T Consensus 237 -------------------------------------------------------~~~~-------~------------- 241 (491)
T PRK10982 237 -------------------------------------------------------QRFP-------D------------- 241 (491)
T ss_pred -------------------------------------------------------cccc-------c-------------
Confidence 0000 0
Q ss_pred hhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEc
Q 000562 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1419)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G 862 (1419)
. .. .+ .+..+.++|+++. .+.+|+|||+.+++||++||+|
T Consensus 242 ----~-------~~------~~--------~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l~G 281 (491)
T PRK10982 242 ----K-------EN------KP--------GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGIAG 281 (491)
T ss_pred ----c-------cC------CC--------CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEEec
Confidence 0 00 00 0012344444332 1248999999999999999999
Q ss_pred CCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCC---CCCCCccHHHHHHHHhh--hcCCC
Q 000562 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQND---IHSPGLTVLESLLFSAW--LRLPS 933 (1419)
Q Consensus 863 ~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~--lr~~~ 933 (1419)
|||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|+. .+++.+|+.++..+... .....
T Consensus 282 ~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (491)
T PRK10982 282 LVGAKRTDIVETLFGIRE--KSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKV 359 (491)
T ss_pred CCCCCHHHHHHHHcCCCc--CCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccc
Confidence 999999999999999876 4689999999775421 1245589999985 35778888777433210 00000
Q ss_pred C-CcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHH
Q 000562 934 E-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1419)
Q Consensus 934 ~-~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1419)
. ......++.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+|||||+|||+.++..+++.|
T Consensus 360 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 360 GLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred cccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHH
Confidence 1 11223345678889999885 344544 3579999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1012 ~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+++.++|.|||+++|+++ ++.+.+|++++|.+ |+++..++..
T Consensus 435 ~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 476 (491)
T PRK10982 435 AELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDTK 476 (491)
T ss_pred HHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEccc
Confidence 999888999999999986 57788999999985 7888777654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-59 Score=515.22 Aligned_cols=471 Identities=22% Similarity=0.315 Sum_probs=360.8
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCC--CCCeeeEEEECCccCCCCCCC-------ceEEEEcc
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEFVPP-------RTSAYVSQ 216 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q 216 (1419)
....+++||||.+++||.++|+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 345799999999999999999999999999999999999876 234589999999987544321 47999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccc
Q 000562 217 QD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1419)
Q Consensus 217 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 294 (1419)
+| .+-|-.|+..-|.-..++... +.+..++.++-++|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg---------------------------------~~~~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRG---------------------------------LSRAAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhc---------------------------------ccHHHHHHHHHHHHHHcCCCch
Confidence 98 355666777666544443211 1222334567888999999875
Q ss_pred ccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh
Q 000562 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1419)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~ 374 (1419)
...+ +.+...|||||||||.||.||+.+|++|+-|||||+||...+.+|.+.|+++..++ +..++.|+|+..-+-.+
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~-gMa~lfITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAEL-GMAILFITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHh-CcEEEEEeccHHHHHHh
Confidence 5433 46778999999999999999999999999999999999999999999999998876 56677899999999999
Q ss_pred cCeEEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhh
Q 000562 375 FDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTG 454 (1419)
Q Consensus 375 ~D~vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (1419)
+|+|+||.+|+++++|+.+++.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999998766521 1111 000
Q ss_pred hchHHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccc
Q 000562 455 KNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTI 534 (1419)
Q Consensus 455 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~ 534 (1419)
+.+.+. .|. ..+
T Consensus 255 r~Ll~a--eP~----g~~-------------------------------------------------------------- 266 (534)
T COG4172 255 RKLLAA--EPS----GDP-------------------------------------------------------------- 266 (534)
T ss_pred HHHHhc--CCC----CCC--------------------------------------------------------------
Confidence 000000 000 000
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhccccc
Q 000562 535 DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDP 614 (1419)
Q Consensus 535 ~~~~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~ 614 (1419)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHH
Q 000562 615 NVVRFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAA 694 (1419)
Q Consensus 615 ~~~rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al 694 (1419)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhh
Q 000562 695 SVNEFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQE 774 (1419)
Q Consensus 695 ~~nef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 774 (1419)
T Consensus 267 -------------------------------------------------------------------------------- 266 (534)
T COG4172 267 -------------------------------------------------------------------------------- 266 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCchhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeC
Q 000562 775 RDRRRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRP 854 (1419)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 854 (1419)
.+ .+ +..+.-+..+|++...+.+..+- +...+...++++||+++++
T Consensus 267 ------------------------~p--~~------~~~~~ll~~~~v~v~f~i~~g~~--~r~~~~~~AVd~isl~L~~ 312 (534)
T COG4172 267 ------------------------PP--LP------EDAPVLLEVEDLRVWFPIKGGFL--RRTVDHLRAVDGISLTLRR 312 (534)
T ss_pred ------------------------CC--CC------CCCCceEEecceEEEEecCCccc--cccchheEEeccceeEecC
Confidence 00 00 00011222233322222221111 0012346789999999999
Q ss_pred CeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCC--CCCCccHHHHHHHH
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDI--HSPGLTVLESLLFS 926 (1419)
Q Consensus 855 Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~--~~~~lTv~E~l~f~ 926 (1419)
||.+||+|.||||||||=.+|.+... .+|+|.++|.++.. ...++.+-.|+|||. +.|.+||.+-+.-+
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~---s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EG 389 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIP---SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEG 389 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcC---cCceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhh
Confidence 99999999999999999999999875 35999999998653 235677899999974 67999999999887
Q ss_pred hhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHH
Q 000562 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1419)
Q Consensus 927 a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~ 1006 (1419)
.....| ..+..++++++.++++.+||..-.-. ..+.++|||||||++|||||+.+|++++||||||.||-.-+.+
T Consensus 390 L~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~----RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQ 464 (534)
T COG4172 390 LRVHEP-KLSAAERDQRVIEALEEVGLDPATRN----RYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQ 464 (534)
T ss_pred hhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh----cCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHH
Confidence 766654 45678899999999999999864221 1256899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1007 VMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1007 i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+++||++.+ .|.+-++++||... +-.+||+++||++ |++|..||.
T Consensus 465 vv~LLr~LQ~k~~LsYLFISHDL~V-vrAl~~~viVm~~-GkiVE~G~~ 511 (534)
T COG4172 465 VLDLLRDLQQKHGLSYLFISHDLAV-VRALCHRVIVMRD-GKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHhCCeEEEEeccHHH-HHHhhceEEEEeC-CEEeeeCCH
Confidence 9999999974 48999999999763 6678999999985 899999996
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-59 Score=583.53 Aligned_cols=447 Identities=19% Similarity=0.266 Sum_probs=325.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCC--C--
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQ--V-- 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~--~-- 221 (1419)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 17 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 93 (490)
T PRK10938 17 KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP 93 (490)
T ss_pred eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhccc
Confidence 4999999999999999999999999999999999998775 8999999976643221 2458999998542 1
Q ss_pred ----CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccc
Q 000562 222 ----AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1419)
Q Consensus 222 ----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1419)
..+||+|++.+.. +...+++.+++.+||++..|.
T Consensus 94 ~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~~ 131 (490)
T PRK10938 94 GEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLDR 131 (490)
T ss_pred chhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhhC
Confidence 1467777764310 001235678899999887776
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.+.||+
T Consensus 132 ~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 132 RFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS--GITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHhhCCE
Confidence 665 59999999999999999999999999999999999999999999998753 45667788999999999999
Q ss_pred EEEEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhch
Q 000562 378 VILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNL 457 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 457 (1419)
|++|++|+++.+|+++++.. .+.+... ..
T Consensus 205 v~~l~~G~i~~~~~~~~~~~---------------~~~~~~~-----------------------------~~------- 233 (490)
T PRK10938 205 AGVLADCTLAETGEREEILQ---------------QALVAQL-----------------------------AH------- 233 (490)
T ss_pred EEEEECCEEEEeCCHHHHhc---------------chhhhhh-----------------------------hh-------
Confidence 99999999999887654310 0000000 00
Q ss_pred HHhhcCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCcccccc
Q 000562 458 SEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDG 537 (1419)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~ 537 (1419)
......
T Consensus 234 -------------------------------------------------------------------------~~~~~~- 239 (490)
T PRK10938 234 -------------------------------------------------------------------------SEQLEG- 239 (490)
T ss_pred -------------------------------------------------------------------------hhccCc-
Confidence 000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchH
Q 000562 538 GLYLGALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVV 617 (1419)
Q Consensus 538 ~~~~g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~ 617 (1419)
.
T Consensus 240 ------------------------------------------------------~------------------------- 240 (490)
T PRK10938 240 ------------------------------------------------------V------------------------- 240 (490)
T ss_pred ------------------------------------------------------c-------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHh
Q 000562 618 RFSRQLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVN 697 (1419)
Q Consensus 618 rf~~~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~n 697 (1419)
..|
T Consensus 241 -------------------------------------------------------~~~---------------------- 243 (490)
T PRK10938 241 -------------------------------------------------------QLP---------------------- 243 (490)
T ss_pred -------------------------------------------------------ccC----------------------
Confidence 000
Q ss_pred hhcCCcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHh
Q 000562 698 EFLGHSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDR 777 (1419)
Q Consensus 698 ef~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 777 (1419)
.. ..
T Consensus 244 ------------~~--------------------------------------------------------~~-------- 247 (490)
T PRK10938 244 ------------EP--------------------------------------------------------DE-------- 247 (490)
T ss_pred ------------cc--------------------------------------------------------cc--------
Confidence 00 00
Q ss_pred hhcCchhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeE
Q 000562 778 RRKGENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVL 857 (1419)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~ 857 (1419)
. .. .. . .+. ....+.++|+++.. +++.+|+|+|+++++||+
T Consensus 248 -----~---~~------~~--~---~~~-------~~~~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~ 288 (490)
T PRK10938 248 -----P---SA------RH--A---LPA-------NEPRIVLNNGVVSY-------------NDRPILHNLSWQVNPGEH 288 (490)
T ss_pred -----c---cc------cc--c---cCC-------CCceEEEeceEEEE-------------CCeeEEeeceEEEcCCCE
Confidence 0 00 00 0 000 00124445554433 234699999999999999
Q ss_pred EEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCCCCCC--CccHHHHHHHHhhh--
Q 000562 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP--GLTVLESLLFSAWL-- 929 (1419)
Q Consensus 858 ~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~--~lTv~E~l~f~a~l-- 929 (1419)
++|+||||||||||+++|+|..+. ..+|+|.++|.+... ...++.+||++|++.+.+ ..|+++++.+....
T Consensus 289 ~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~ 367 (490)
T PRK10938 289 WQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSI 367 (490)
T ss_pred EEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhcccccc
Confidence 999999999999999999996531 147999999976421 123467999999875543 35777766543211
Q ss_pred cCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHH
Q 000562 930 RLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008 (1419)
Q Consensus 930 r~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~ 1008 (1419)
....... .+.++.++++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..++
T Consensus 368 ~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~ 441 (490)
T PRK10938 368 GIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVR 441 (490)
T ss_pred ccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHH
Confidence 1111111 223456889999999986 666553 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcC-CEEEEEecCCCHHHHH-hcCeEEEEecCCEEEEeC
Q 000562 1009 RTVRNIVNTG-RTIVCTIHQPSIDIFE-SFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1009 ~~l~~l~~~g-~tvi~~~H~~~~~~~~-~~D~v~~l~~gG~~~~~G 1052 (1419)
+.|++++++| .|||+++|+++ ++.+ .+|++++|++ |+++..-
T Consensus 442 ~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~~ 485 (490)
T PRK10938 442 RFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRYV 485 (490)
T ss_pred HHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEee
Confidence 9999998776 47999999976 3555 4899999986 6766543
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-57 Score=570.74 Aligned_cols=189 Identities=20% Similarity=0.249 Sum_probs=154.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCC-CCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d-~~~~~lTv 919 (1419)
++.+|+|||++|++||+++|+||||||||||+++|+|..+ +.+|+|.+++. ..+||++|++ .+++.+||
T Consensus 336 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 405 (556)
T PRK11819 336 DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKTV 405 (556)
T ss_pred CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEeCchhhcCCCCCH
Confidence 3569999999999999999999999999999999999866 46899998542 1489999986 67788999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
+|++.+....+.. ... ....+++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|
T Consensus 406 ~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 406 WEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKV-----GVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred HHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 9999886432211 111 122456899999864 345543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE-EeCC
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 1053 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~-~~G~ 1053 (1419)
||+.++..+.+.|+++. .|||+++|+++ .+...+|++++|++||++. +.|+
T Consensus 476 LD~~~~~~l~~~l~~~~---~tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~ 527 (556)
T PRK11819 476 LDVETLRALEEALLEFP---GCAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGN 527 (556)
T ss_pred CCHHHHHHHHHHHHhCC---CeEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCC
Confidence 99999999999999872 48999999976 4777899999998767776 5554
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-56 Score=563.93 Aligned_cols=189 Identities=19% Similarity=0.259 Sum_probs=154.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCC-CCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d-~~~~~lTv 919 (1419)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.+++. ..+||++|++ .+++.+||
T Consensus 334 ~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~--------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 334 DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET--------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--------eEEEEEeCCccccCCCCcH
Confidence 3569999999999999999999999999999999999865 45899998542 1489999986 47788999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
+|++.+...... .... ...++++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|
T Consensus 404 ~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 404 WEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKV-----GQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred HHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 999988643221 1111 123457899999864 445543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE-EeCC
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGP 1053 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~-~~G~ 1053 (1419)
||+.+...+++.|+++. .|||+++|++. .+...+|++++|++||+++ +.|+
T Consensus 474 LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~ 525 (552)
T TIGR03719 474 LDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGN 525 (552)
T ss_pred CCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCC
Confidence 99999999999999872 48999999976 4667899999998767766 5554
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=562.72 Aligned_cols=186 Identities=18% Similarity=0.263 Sum_probs=154.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCC--CCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI--HSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~--~~~~lT 918 (1419)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|. +.+||++|++. +.+.+|
T Consensus 331 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~~--------~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 331 NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE--PDSGTVKWSEN--------ANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCc--------eEEEEEcccccccCCCCCc
Confidence 3469999999999999999999999999999999999865 45899999873 45899999864 456799
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
++|++.+.. ... ..++.++++++.+++. +..+..+ ..||||||||++||++|+.+|+||+|||||+
T Consensus 401 ~~~~~~~~~---~~~-----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~ 467 (530)
T PRK15064 401 LFDWMSQWR---QEG-----DDEQAVRGTLGRLLFSQDDIKKSV-----KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTN 467 (530)
T ss_pred HHHHHHHhc---cCC-----ccHHHHHHHHHHcCCChhHhcCcc-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 999986421 111 1124578899999984 5555543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE-EeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~-~~G~~ 1054 (1419)
|||+.+...+++.|+++ +.|||++|||++ .+...+|++++|++ |+++ +.|+.
T Consensus 468 ~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~g~~ 520 (530)
T PRK15064 468 HMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFSGTY 520 (530)
T ss_pred CCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcCCCH
Confidence 99999999999999986 459999999986 46678999999986 5766 77764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-55 Score=546.71 Aligned_cols=199 Identities=23% Similarity=0.248 Sum_probs=164.4
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHH
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1419)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l 923 (1419)
.|+++|+++++||++||+||||||||||+++|+|..+ +.+|+|.++ ..++|++|+..+.+.+||+|++
T Consensus 354 ~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~--p~~G~I~~~----------~~i~y~~Q~~~~~~~~tv~e~l 421 (590)
T PRK13409 354 SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK--PDEGEVDPE----------LKISYKPQYIKPDYDGTVEDLL 421 (590)
T ss_pred EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEEe----------eeEEEecccccCCCCCcHHHHH
Confidence 4889999999999999999999999999999999876 458999886 1489999998888899999999
Q ss_pred HHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHH
Q 000562 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1419)
Q Consensus 924 ~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~ 1003 (1419)
.+..... .. ...++++++.+++.+..+..+ ..|||||||||+||++|+.+|+||+|||||+|||+.+
T Consensus 422 ~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~ 488 (590)
T PRK13409 422 RSITDDL-----GS---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQ 488 (590)
T ss_pred HHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 8752111 11 124678999999987777654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCc---hhHHHHHHHhcCCC
Q 000562 1004 AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK---SCELIKYFEAVEGV 1071 (1419)
Q Consensus 1004 ~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~---~~~~~~~f~~~~g~ 1071 (1419)
+..+.+.|++++++ |+|||+++||+. .+...+|++++|+ | ++...|..... .+.+-.|++.+ ++
T Consensus 489 ~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~-~~~~~g~~~~~~~~~~~~~~~l~~~-~i 556 (590)
T PRK13409 489 RLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-G-EPGKHGHASGPMDMREGMNRFLKEL-GI 556 (590)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-C-cceeeeecCCchhHHHHHHHHHHHc-CC
Confidence 99999999999764 899999999976 4667899999996 3 77777764332 12345667776 54
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-54 Score=544.41 Aligned_cols=185 Identities=22% Similarity=0.351 Sum_probs=151.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCC--CCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND--IHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d--~~~~~lT 918 (1419)
++.+|+|+|++|++|+++||+|||||||||||++|+|... +.+|+|.+++. ..+||++|+. .+.+..|
T Consensus 324 ~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~--------~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 324 DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG--------IKLGYFAQHQLEFLRADES 393 (638)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--------EEEEEecCcchhhCCccch
Confidence 4579999999999999999999999999999999999875 45899999742 2589999974 3456678
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
+.+++.- .. + ....+.+.++++.+++.. ..+..+ ..|||||||||+||++|+.+|++|+|||||+
T Consensus 394 ~~~~~~~---~~-~-----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgGekqRl~La~~l~~~p~lLlLDEPt~ 459 (638)
T PRK10636 394 PLQHLAR---LA-P-----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGGEKARLVLALIVWQRPNLLLLDEPTN 459 (638)
T ss_pred HHHHHHH---hC-c-----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 8877531 11 1 112345788999999863 455544 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE-EeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~-~~G~~ 1054 (1419)
|||+.+...+.+.|+++ +.|||+++||+. .+...+|++++|.+ |+++ |.|+.
T Consensus 460 ~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~g~~ 512 (638)
T PRK10636 460 HLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFDGDL 512 (638)
T ss_pred CCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcCCCH
Confidence 99999999999999987 349999999976 46778999999985 6776 88875
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=507.61 Aligned_cols=452 Identities=23% Similarity=0.348 Sum_probs=348.8
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC----ceEEEEccCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVA 222 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 222 (1419)
..++|+|||+.+++||+++|+|.||||||||+|+|+|.+.|+ +|+|.+||++.....++ .-|+.|.|+..++|
T Consensus 20 gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p 96 (500)
T COG1129 20 GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLVP 96 (500)
T ss_pred CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhccC
Confidence 457999999999999999999999999999999999999886 99999999988655443 56899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
++||.|||.++.......... +.......+..+|+.+|++...++.||+
T Consensus 97 ~LsVaeNifLgre~~~~~g~i------------------------------d~~~m~~~A~~~l~~lg~~~~~~~~v~~- 145 (500)
T COG1129 97 NLSVAENIFLGREPTRRFGLI------------------------------DRKAMRRRARELLARLGLDIDPDTLVGD- 145 (500)
T ss_pred CccHHHHhhcccccccCCCcc------------------------------CHHHHHHHHHHHHHHcCCCCChhhhhhh-
Confidence 999999998765432210000 0111234577889999997558888875
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
||+||||-|.||||+..++++++|||||++|+...+.++++.++++.. .+..++.++|..+|++++||+|.||.
T Consensus 146 ----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~--~Gv~ii~ISHrl~Ei~~i~DritVlR 219 (500)
T COG1129 146 ----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA--QGVAIIYISHRLDEVFEIADRITVLR 219 (500)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEcCcHHHHHHhcCEEEEEe
Confidence 999999999999999999999999999999999999999999999975 47888889999999999999999999
Q ss_pred CCeEEEEcCh-hhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhh
Q 000562 383 EGQIVYQGPR-VSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEEL 461 (1419)
Q Consensus 383 ~G~iv~~G~~-~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 461 (1419)
||+.+..++. .+. +.++..
T Consensus 220 DG~~v~~~~~~~~~--------------------------------------------~~~~lv---------------- 239 (500)
T COG1129 220 DGRVVGTRPTAAET--------------------------------------------SEDELV---------------- 239 (500)
T ss_pred CCEEeeecccccCC--------------------------------------------CHHHHH----------------
Confidence 9999976642 211 000000
Q ss_pred cCccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhh
Q 000562 462 AVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYL 541 (1419)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~ 541 (1419)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHH
Q 000562 542 GALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSR 621 (1419)
Q Consensus 542 g~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~ 621 (1419)
-.|+|-.
T Consensus 240 -----------------------------------------------------------------~~MvGr~-------- 246 (500)
T COG1129 240 -----------------------------------------------------------------RLMVGRE-------- 246 (500)
T ss_pred -----------------------------------------------------------------HHhhCcc--------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcC
Q 000562 622 QLLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLG 701 (1419)
Q Consensus 622 ~~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~ 701 (1419)
T Consensus 247 -------------------------------------------------------------------------------- 246 (500)
T COG1129 247 -------------------------------------------------------------------------------- 246 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcC
Q 000562 702 HSWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKG 781 (1419)
Q Consensus 702 ~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1419)
.+ .
T Consensus 247 --~~------------------~--------------------------------------------------------- 249 (500)
T COG1129 247 --LE------------------D--------------------------------------------------------- 249 (500)
T ss_pred --hh------------------h---------------------------------------------------------
Confidence 00 0
Q ss_pred chhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEE
Q 000562 782 ENVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALV 861 (1419)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 861 (1419)
..+ . . . .+ ...+..++.++++. ...++||||++++||+++|-
T Consensus 250 -----~~~-----~--~-~--~~------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIlGia 291 (500)
T COG1129 250 -----LFP-----E--P-P--EE------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEILGIA 291 (500)
T ss_pred -----hcc-----c--c-c--cc------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEEEEe
Confidence 000 0 0 0 00 00011122222211 11467999999999999999
Q ss_pred cCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccC---CCCCCCccHHHHHHHHhhhcCC-C
Q 000562 862 GVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQN---DIHSPGLTVLESLLFSAWLRLP-S 933 (1419)
Q Consensus 862 G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~---d~~~~~lTv~E~l~f~a~lr~~-~ 933 (1419)
|-=|||+|-|+++|.|..+ ..+|+|.+||.+.... ..+.-++|||.| +-+++.++++||+.++...+.. .
T Consensus 292 GLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~ 369 (500)
T COG1129 292 GLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRR 369 (500)
T ss_pred ccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccc
Confidence 9999999999999999654 4589999999986532 345578999987 5678899999999887332322 1
Q ss_pred -CCcHHHHHHHHHHHHHHcCCcccc-CCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHH
Q 000562 934 -EIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1419)
Q Consensus 934 -~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l 1011 (1419)
-.+....++.+++..+.+++..-. +.. +..||||.+|||.|||.|..+|+||+|||||.|+|.-+..+|.++|
T Consensus 370 ~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li 444 (500)
T COG1129 370 GLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLI 444 (500)
T ss_pred cccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHH
Confidence 244455566788889988885322 222 4579999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1012 ~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
++++++|++||+++-+.. |+...||||+||.+ |+++-.=+.+
T Consensus 445 ~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~-Gri~~e~~~~ 486 (500)
T COG1129 445 RELAAEGKAILMISSELP-ELLGLSDRILVMRE-GRIVGELDRE 486 (500)
T ss_pred HHHHHCCCEEEEEeCChH-HHHhhCCEEEEEEC-CEEEEEeccc
Confidence 999999999999999975 79999999999985 7887644443
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-54 Score=548.42 Aligned_cols=190 Identities=22% Similarity=0.285 Sum_probs=153.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCC-CCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d-~~~~~lTv 919 (1419)
++.+|+|+|++|++|+++||+|||||||||||++|+|..+ +.+|+|.+ |.+. .+||++|+. .+.+.+||
T Consensus 331 ~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~-------~i~y~~q~~~~l~~~~tv 400 (635)
T PRK11147 331 GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL-------EVAYFDQHRAELDPEKTV 400 (635)
T ss_pred CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc-------EEEEEeCcccccCCCCCH
Confidence 4579999999999999999999999999999999999865 45899998 4321 489999975 57889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
.|++.+..... ... .....+.++++.+++. +..+..+ +.|||||||||+||++|+.+|++|||||||+|
T Consensus 401 ~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqRl~la~al~~~p~lLlLDEPt~~ 470 (635)
T PRK11147 401 MDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGERNRLLLARLFLKPSNLLILDEPTND 470 (635)
T ss_pred HHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 99998753211 011 1123467888888885 3455543 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe-cCCEEEEeCCC
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-RGGELIYAGPL 1054 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-~gG~~~~~G~~ 1054 (1419)
||+.+...+.+.|+++ +.|||++|||.. .+...+|++++|. +|.-..|.|..
T Consensus 471 LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 471 LDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred CCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 9999999999999876 469999999975 4667899999997 55445566664
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-52 Score=527.73 Aligned_cols=186 Identities=22% Similarity=0.316 Sum_probs=147.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
..+|+|+|++|++|++++|+|||||||||||++|+|..+ +.+|+|.+++. ..+||++|+.. ..+++.+
T Consensus 522 ~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~--p~~G~I~~~~~--------~~igyv~Q~~~--~~l~~~~ 589 (718)
T PLN03073 522 PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ--PSSGTVFRSAK--------VRMAVFSQHHV--DGLDLSS 589 (718)
T ss_pred CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCceEEECCc--------eeEEEEecccc--ccCCcch
Confidence 468999999999999999999999999999999999866 45899998752 35899999752 4456666
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
+..+......+. .. .+.++++++.+++.+ ..+.. +..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 590 ~~~~~~~~~~~~-~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD 659 (718)
T PLN03073 590 NPLLYMMRCFPG-VP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659 (718)
T ss_pred hHHHHHHHhcCC-CC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 543221111111 11 234678999999973 44443 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE-EeCCC
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~-~~G~~ 1054 (1419)
+.+...+++.|++. +.|||+++||+. .+...+|++++|.+ |+++ +.|+.
T Consensus 660 ~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~~ 709 (718)
T PLN03073 660 LDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGTF 709 (718)
T ss_pred HHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCCH
Confidence 99999998888764 349999999976 46678999999985 6877 77764
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-51 Score=495.68 Aligned_cols=218 Identities=26% Similarity=0.308 Sum_probs=171.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
+++++|+|+.+.+|+.++|+|+|||||||||++|+|.+.|+ +|+|...+ .-+++|++|++...+..||.
T Consensus 16 ~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~tv~ 84 (530)
T COG0488 16 RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKTVL 84 (530)
T ss_pred ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCccHH
Confidence 47999999999999999999999999999999999999876 99998754 23689999999988889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc---cHHHHHHHh-hhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE---DLDIFMKSF-ALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~---did~~~~~~-~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+.+.-+.. ..++...+..... ...+++ ..+.+.... .+++++.+.+++.++..||++.. ++.++
T Consensus 85 ~~v~~~~~-----~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~--- 152 (530)
T COG0488 85 DYVIEGFG-----ELRELLAELEEAY---ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVS--- 152 (530)
T ss_pred HHHHhhhH-----HHHHHHHHHHHHH---HhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchh---
Confidence 99976543 1122221111111 111111 111221111 34567778889999999999887 67666
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.||||||.||+||++|+.+|++|+|||||++||..+..++-+.|++. .+ ++|+++|++..+-+.|++|+-++.
T Consensus 153 --~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~----~g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 153 --SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY----PG-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred --hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC----CC-cEEEEeCCHHHHHHHhhheEEecC
Confidence 59999999999999999999999999999999999999999999853 34 667799999999999999999999
Q ss_pred CeEE-EEcChhhH
Q 000562 384 GQIV-YQGPRVSV 395 (1419)
Q Consensus 384 G~iv-~~G~~~~~ 395 (1419)
|++. |.|..+..
T Consensus 226 g~l~~y~Gny~~~ 238 (530)
T COG0488 226 GKLTPYKGNYSSY 238 (530)
T ss_pred CceeEecCCHHHH
Confidence 9875 66655443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=459.48 Aligned_cols=458 Identities=21% Similarity=0.328 Sum_probs=354.1
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC----ceEEEEccCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVA 222 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 222 (1419)
...+++|||+.+++||+.+|+|.||||||||+++|.|.+.|+ +|+|.++|++..-..|. .-||+|.|+..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 467999999999999999999999999999999999999887 99999999988655543 46899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
++||.|||..+..-.. +.+.+ ......+++++.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~-~~~~~------------------------------~~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSK-GGLID------------------------------RRQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccc-ccccC------------------------------HHHHHHHHHHHHHHhCCCCCccceeec-
Confidence 9999999998754210 00000 011234578899999999988988886
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
||=||||||.|-++|+.+|++|+|||||+-|-+....++++.|++++.. +.+|+.|+|-..|+.+.+|++.+|.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~--G~tIi~ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE--GKTIIFITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhhCeeEEEe
Confidence 9999999999999999999999999999999999999999999999863 6667779999999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhcCcccccccccCCCCCCCCCCHhHHHHHHHhchhhhchHHhhc
Q 000562 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELA 462 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 462 (1419)
.|+++-.-++ . ++ .+.++.++.
T Consensus 215 ~Gkvvgt~~~--~--------------~~---------------------------~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--V--------------AE---------------------------TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--C--------------CC---------------------------CCHHHHHHH---------------
Confidence 9998643210 0 00 000000000
Q ss_pred CccccccCCcccccCCCCCCchHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHhhcccCCCCccccccchhhH
Q 000562 463 VPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHHKTIDDGGLYLG 542 (1419)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~i~ali~g~vf~~~~~~~~~~~~~~~~~g 542 (1419)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcccccchhhHHHHHHHHHhhHHHHHHHHHHhhhhhhcccccchHHHHHH
Q 000562 543 ALYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGYDPNVVRFSRQ 622 (1419)
Q Consensus 543 ~lf~~l~~~~~~~~~~~~~~~~~~~v~~k~r~~~~y~~~ay~l~~~~~~iP~~~i~~~i~~~i~Y~~~G~~~~~~rf~~~ 622 (1419)
|+|-.
T Consensus 237 ------------------------------------------------------------------MvG~~--------- 241 (501)
T COG3845 237 ------------------------------------------------------------------MVGRE--------- 241 (501)
T ss_pred ------------------------------------------------------------------hcCCc---------
Confidence 00000
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccccCCCcchhHHHHHhhcHHHHHHHHHHHhhhcCC
Q 000562 623 LLLYFFLHQMSIGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNAASVNEFLGH 702 (1419)
Q Consensus 623 ~l~~~~~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~l~~~l~~Gf~i~~~~ip~~~~w~~~isp~~ya~~al~~nef~~~ 702 (1419)
T Consensus 242 -------------------------------------------------------------------------------- 241 (501)
T COG3845 242 -------------------------------------------------------------------------------- 241 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccCCCCCccchHHHhhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccchhhhhhHHhhhcCc
Q 000562 703 SWDKKAGNSNFSLGEAILRQRSLFPESYWYWIGVGAMLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGE 782 (1419)
Q Consensus 703 ~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~g~ll~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1419)
+. .
T Consensus 242 ----------------v~-----------------------------------------------~-------------- 244 (501)
T COG3845 242 ----------------VV-----------------------------------------------L-------------- 244 (501)
T ss_pred ----------------cc-----------------------------------------------c--------------
Confidence 00 0
Q ss_pred hhhHHHHHhhhccccccccccccCCcccccccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEc
Q 000562 783 NVVIELREYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVG 862 (1419)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G 862 (1419)
..+. ... ..+ +.-+..+|++...+ .....+++|||++++||++||.|
T Consensus 245 ----~~~~----~~~-------~pg------~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAG 291 (501)
T COG3845 245 ----RVVK----PPS-------TPG------EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAG 291 (501)
T ss_pred ----cccc----CCC-------CCC------CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEe
Confidence 0000 000 000 12244444443321 12467889999999999999999
Q ss_pred CCCCChhHHHHhHhCCCCCceEEEEEEECCccC----Cc-ccccceEEEEccCC---CCCCCccHHHHHHHHhhhcCC--
Q 000562 863 VSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGYCEQND---IHSPGLTVLESLLFSAWLRLP-- 932 (1419)
Q Consensus 863 ~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gyv~Q~d---~~~~~lTv~E~l~f~a~lr~~-- 932 (1419)
..|-|-+.|+.+|+|..+ +.+|+|.++|+++ .. ...+.-++|||.|- .+.+.+|+.||+.+...-+.|
T Consensus 292 V~GNGQ~eL~eaisGlr~--~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~ 369 (501)
T COG3845 292 VAGNGQSELVEAISGLRK--PASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFS 369 (501)
T ss_pred cCCCCHHHHHHHHhCCCc--cCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccc
Confidence 999999999999999875 3459999999986 22 22345689999975 456899999999876432211
Q ss_pred --CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHH
Q 000562 933 --SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010 (1419)
Q Consensus 933 --~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~ 1010 (1419)
.-......++...++++.++....... ...+.||||++||+-+||+|..+|++|+..+||.|||..+.+.|.+.
T Consensus 370 ~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~ 445 (501)
T COG3845 370 RGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHER 445 (501)
T ss_pred cccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHH
Confidence 123445667788999999988632211 12468999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 1011 l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
|.+.+++|+.|++++-+.+ ++++.+|||.||.+ |+++...+..+
T Consensus 446 l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~~-Gri~~~~~~~~ 489 (501)
T COG3845 446 LLELRDAGKAVLLISEDLD-EILELSDRIAVIYE-GRIVGIVPPEE 489 (501)
T ss_pred HHHHHhcCCEEEEEehhHH-HHHHhhheeeeeeC-Cceeccccccc
Confidence 9999999999999999987 79999999999995 79988877653
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=375.13 Aligned_cols=211 Identities=27% Similarity=0.376 Sum_probs=186.7
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC----cccccceEEEEc
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGYCE 908 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gyv~ 908 (1419)
++..+.++..++|+|||+++++||+++|+|||||||||||+||.++.. +.+|+|.++|.+.. ....|+.+|+|+
T Consensus 6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVF 83 (240)
T COG1126 6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVF 83 (240)
T ss_pred EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeec
Confidence 444556678899999999999999999999999999999999999877 56899999997543 235678899999
Q ss_pred cCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 909 Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
|+..+||++||.||+..+...- ...++++.++...+.|+.+||.+.+|... ..|||||||||+|||||+.+|+
T Consensus 84 Q~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 84 QQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred ccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHHHHHHHHHHHHcCCCC
Confidence 9999999999999999875322 23456677788899999999999998863 5899999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
++++|||||.|||+...++.+.+++++++|.|.||+||++.. .-+.+|||+.|+ +|+++..|++
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p 220 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPP 220 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCH
Confidence 999999999999999999999999999999999999999874 667899999998 4899999875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=364.07 Aligned_cols=221 Identities=27% Similarity=0.378 Sum_probs=188.7
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC----CCCceEEEEccCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----VPPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~d~~~~ 222 (1419)
+..+|+|||+++++||+++|+|||||||||||++|.|+..++ +|+|.++|.++... ..++.+|+|+|+..+||
T Consensus 14 ~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 14 DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 357999999999999999999999999999999999998776 99999999765322 23578999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
++||.||+..+...- ......+++.....+|+.+||.+.+|...
T Consensus 91 HlTvleNv~lap~~v---------------------------------~~~~k~eA~~~A~~lL~~VGL~~ka~~yP--- 134 (240)
T COG1126 91 HLTVLENVTLAPVKV---------------------------------KKLSKAEAREKALELLEKVGLADKADAYP--- 134 (240)
T ss_pred cchHHHHHHhhhHHH---------------------------------cCCCHHHHHHHHHHHHHHcCchhhhhhCc---
Confidence 999999998864311 01112233456778999999999988654
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
..|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++. +.|.+.++|....+.+.+|||+.|+
T Consensus 135 --~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e--GmTMivVTHEM~FAr~VadrviFmd 210 (240)
T COG1126 135 --AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMIIVTHEMGFAREVADRVIFMD 210 (240)
T ss_pred --cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc--CCeEEEEechhHHHHHhhheEEEee
Confidence 569999999999999999999999999999999999999999999999974 5666679999999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHH
Q 000562 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~ 418 (1419)
+|+++.+|+++++ |..|.+....+|+..
T Consensus 211 ~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 211 QGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred CCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 9999999999886 456776667777754
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=396.58 Aligned_cols=186 Identities=21% Similarity=0.285 Sum_probs=147.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccC--CCCCCCccHH
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN--DIHSPGLTVL 920 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~--d~~~~~lTv~ 920 (1419)
.++++++|-+.+++.+|++||||||||||||++.|... +..|.|.-.-+. .+++..|. +.+.-+.++.
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~--p~~G~vs~~~H~--------~~~~y~Qh~~e~ldl~~s~l 473 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ--PTIGMVSRHSHN--------KLPRYNQHLAEQLDLDKSSL 473 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc--cccccccccccc--------cchhhhhhhHhhcCcchhHH
Confidence 68899999999999999999999999999999999766 457776544332 22333443 3333456777
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|+++=. .+. +.+.+.+..++..+||....+.. ..+.||+|||+||.+|+.++..|.||+|||||+|||
T Consensus 474 e~~~~~----~~~----~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLD 541 (614)
T KOG0927|consen 474 EFMMPK----FPD----EKELEEMRSILGRFGLTGDAQVV----PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLD 541 (614)
T ss_pred HHHHHh----ccc----cchHHHHHHHHHHhCCCcccccc----chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCC
Confidence 776421 111 23445678899999998655433 246899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
..+...+.+.|.+. ..+||+++||... +-..++++.+..+++...+.|..
T Consensus 542 i~tid~laeaiNe~---~Ggvv~vSHDfrl-I~qVaeEi~~c~~~~~~~~~G~i 591 (614)
T KOG0927|consen 542 IETIDALAEAINEF---PGGVVLVSHDFRL-ISQVAEEIWVCENGTVTKWDGDI 591 (614)
T ss_pred chhHHHHHHHHhcc---CCceeeeechhhH-HHHHHHHhHhhccCceeecCccH
Confidence 99999999999875 5789999999764 77789999999999899999974
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=390.49 Aligned_cols=216 Identities=32% Similarity=0.449 Sum_probs=189.5
Q ss_pred ccccc-ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCC
Q 000562 836 GVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDI 912 (1419)
Q Consensus 836 ~~~~~-~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~ 912 (1419)
.+.++ ++.+|+||||+|++||++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.
T Consensus 11 ~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~--p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 11 TKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK--PTSGEILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred EEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 34455 5789999999999999999999999999999999999877 468999999987654 456788999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++.+||+|+|.|.+.++.+.. ...+++++++++.++|.+.++.. +++||+||||||+||+||+++|+++||
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred CCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999987543 34556799999999999855544 358999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcC-CEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHHHh
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEA 1067 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g-~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f~~ 1067 (1419)
||||+|||+.++..+.+.|++++++| +||+++||+++ ++...||+|++|++ |++++.|+. .++...+..
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~-G~~~~~g~~----~~l~~~~~~ 230 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILND-GKIIAEGTP----EELKEKFGG 230 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeC-CEEEEeCCH----HHHHHhhcc
Confidence 99999999999999999999999887 89999999987 67788999999985 899999975 345555543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=358.26 Aligned_cols=226 Identities=25% Similarity=0.361 Sum_probs=193.5
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEE
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGY 906 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy 906 (1419)
++..+.++.+.+++|||++|++||+++||||||+||||||++|.|..+ +.+|+|.++|.++.+ ...++++|+
T Consensus 12 r~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~--P~~GeI~i~G~~i~~ls~~~~~~ir~r~Gv 89 (263)
T COG1127 12 RGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR--PDKGEILIDGEDIPQLSEEELYEIRKRMGV 89 (263)
T ss_pred eeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC--CCCCeEEEcCcchhccCHHHHHHHHhheeE
Confidence 334445678899999999999999999999999999999999999887 568999999988643 245678999
Q ss_pred EccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-cCCcccCCCCCCCCHHHHHHHHHHHHHhh
Q 000562 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1419)
Q Consensus 907 v~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~lSgGqrqrl~iA~~L~~ 985 (1419)
++|+-.+|..+||+||+.|.. |.....+++..++.+..-++.+||... .+.. +++||||+|||+++||||+.
T Consensus 90 lFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsELSGGM~KRvaLARAial 162 (263)
T COG1127 90 LFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSELSGGMRKRVALARAIAL 162 (263)
T ss_pred EeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chhhcchHHHHHHHHHHHhc
Confidence 999999999999999999854 333455667777888888999999876 5443 56899999999999999999
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC----chhH
Q 000562 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS----KSCE 1060 (1419)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~----~~~~ 1060 (1419)
+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |+++..|++++ +..-
T Consensus 163 dPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gkv~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 163 DPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GKVIAEGTPEELLASDDPW 240 (263)
T ss_pred CCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CEEEEeCCHHHHHhCCCHH
Confidence 99999999999999999999999999999876 899999999987 68899999999996 79999999753 1123
Q ss_pred HHHHHHhcC
Q 000562 1061 LIKYFEAVE 1069 (1419)
Q Consensus 1061 ~~~~f~~~~ 1069 (1419)
+.+||....
T Consensus 241 v~qf~~G~~ 249 (263)
T COG1127 241 VRQFFNGIR 249 (263)
T ss_pred HHHHhcCCC
Confidence 677887653
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=367.99 Aligned_cols=224 Identities=27% Similarity=0.386 Sum_probs=195.2
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCC
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDW 219 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 219 (1419)
...++|+|||+.|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|.++..... ++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999998776 9999999988876543 478999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1419)
++...||.||++|+.+..+..+ .+.+.++.++|+.+||++.+|..
T Consensus 94 LLssrTV~~NvA~PLeiag~~k----------------------------------~ei~~RV~elLelVgL~dk~~~y- 138 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVPK----------------------------------AEIKQRVAELLELVGLSDKADRY- 138 (339)
T ss_pred ccccchHHhhhhhhHhhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhccC-
Confidence 9999999999999887765221 12345788999999999888755
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
+.+|||||||||+|||||+.+|+||++|||||+|||.|+..|.+.|+++.+++ +.||+.++|-.+-+-+.||||.
T Consensus 139 ----P~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~l-glTIvlITHEm~Vvk~ic~rVa 213 (339)
T COG1135 139 ----PAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEMEVVKRICDRVA 213 (339)
T ss_pred ----chhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHc-CCEEEEEechHHHHHHHhhhhe
Confidence 45799999999999999999999999999999999999999999999998876 5667779999999999999999
Q ss_pred EEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhc
Q 000562 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~ 420 (1419)
+|++|+++++|+..++ |..|.+.-..+|+.+..
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~ 246 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETL 246 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhc
Confidence 9999999999999887 45666665666666544
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=372.21 Aligned_cols=212 Identities=27% Similarity=0.410 Sum_probs=183.2
Q ss_pred cccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC
Q 000562 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI 912 (1419)
Q Consensus 836 ~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~ 912 (1419)
+..++++.+|+|+|+++++||+++|+||||||||||||+|+|..+ +.+|+|.++|.++.. +.++|.++|+||...
T Consensus 9 s~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~--p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~ 86 (258)
T COG1120 9 SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKELAKKLAYVPQSPS 86 (258)
T ss_pred EEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC--CCCCEEEECCCchhhcCHHHHhhhEEEeccCCC
Confidence 334567889999999999999999999999999999999999776 468999999998643 567889999999998
Q ss_pred CCCCccHHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 913 HSPGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
....+||+|.+.++..-.... ....++.++.++++++.+++.++++..+ ..||||||||+.|||||+++|+||+
T Consensus 87 ~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 87 APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChhHHHHHHHHHHHhcCCCEEE
Confidence 888999999999874322111 1122344557899999999999999875 4799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
||||||.||...+.++++.+++++ ++|+|||+++||++. ....+|++++|++ |+++..|++.+
T Consensus 162 LDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~-A~ryad~~i~lk~-G~i~a~G~p~e 225 (258)
T COG1120 162 LDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNL-AARYADHLILLKD-GKIVAQGTPEE 225 (258)
T ss_pred eCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhCCEEEEEEC-CeEEeecCcch
Confidence 999999999999999999999998 459999999999984 7789999999985 89999998753
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=354.36 Aligned_cols=210 Identities=26% Similarity=0.387 Sum_probs=185.4
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1419)
++.+++|+|++|++||+++++|||||||||+||+|.+++.|+ +|+|.+||+++.+.+. +|.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 457999999999999999999999999999999999999886 9999999999987654 6899999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||.|||.+-..+.+-. .++.+.+++++|+.+||+.. ...+++
T Consensus 90 ~Tv~eNIa~VP~L~~w~----------------------------------k~~i~~r~~ELl~lvgL~p~---~~~~Ry 132 (309)
T COG1125 90 LTVAENIATVPKLLGWD----------------------------------KERIKKRADELLDLVGLDPS---EYADRY 132 (309)
T ss_pred ccHHHHHHhhhhhcCCC----------------------------------HHHHHHHHHHHHHHhCCCHH---HHhhcC
Confidence 99999998866554322 12234568999999999752 123466
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
+..|||||+|||.+||||+.+|++++||||+++||+-++.++.+.++++.+..+ +||+.++|+..|++.++|||++|++
T Consensus 133 P~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~-kTivfVTHDidEA~kLadri~vm~~ 211 (309)
T COG1125 133 PHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELG-KTIVFVTHDIDEALKLADRIAVMDA 211 (309)
T ss_pred chhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhC-CEEEEEecCHHHHHhhhceEEEecC
Confidence 778999999999999999999999999999999999999999999999988775 5566699999999999999999999
Q ss_pred CeEEEEcChhhHHH
Q 000562 384 GQIVYQGPRVSVLD 397 (1419)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1419)
|+++.++++++++.
T Consensus 212 G~i~Q~~~P~~il~ 225 (309)
T COG1125 212 GEIVQYDTPDEILA 225 (309)
T ss_pred CeEEEeCCHHHHHh
Confidence 99999999999874
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-41 Score=364.93 Aligned_cols=203 Identities=27% Similarity=0.461 Sum_probs=176.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCC--CCCCccHH
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI--HSPGLTVL 920 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~--~~~~lTv~ 920 (1419)
.+|+|||+++++|++++|+||||||||||+|+|.|..+ +.+|+|.++|.+.....-+..+|||||... ....+||+
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHH
Confidence 69999999999999999999999999999999999766 568999999998765444578999999642 22348999
Q ss_pred HHHHHHhhhcCC--CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 921 ESLLFSAWLRLP--SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 921 E~l~f~a~lr~~--~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
|.+..+..-+.. .... ++.++.++++|+.+|+.+++|..+| .|||||+||+.|||||+++|++|+|||||+|
T Consensus 96 d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~g 169 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTG 169 (254)
T ss_pred HHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCcHHHHHHHHHHHhccCCCEEEecCCccc
Confidence 999887433321 1122 3346789999999999999999876 6999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
+|+.++..++++|++++++|+||++++||++ .+.+.||+++.|+ +++++.||+.+
T Consensus 170 vD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~G~~~~ 224 (254)
T COG1121 170 VDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIASGPPEE 224 (254)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEeccChhh
Confidence 9999999999999999988999999999998 5889999999997 58999999864
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=365.75 Aligned_cols=203 Identities=26% Similarity=0.370 Sum_probs=182.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~ 914 (1419)
...+|+|||++|++||++||+|+||||||||++++.+... +.+|+|.+||.++.. +..|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4679999999999999999999999999999999999877 569999999976532 35678899999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
...||.||+.|...+.. .++++.+++|.++++.+||.+.++.. +.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999877663 55778889999999999999888876 35899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|||.|||.+...|.+.|+++.++ |.||++++|+++. +-+.|||+.+|++ |+++..|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~V-vk~ic~rVavm~~-G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEMEV-VKRICDRVAVLDQ-GRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHhhhheEeeC-CEEEEeccHH
Confidence 99999999999999999999754 9999999999763 6678999999985 8999999864
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=357.81 Aligned_cols=194 Identities=26% Similarity=0.384 Sum_probs=173.7
Q ss_pred ccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCcc
Q 000562 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
++...+|+|||++|.+||+++|+||||||||||||+|+|..+ +.+|+|.++|.++. .....+|||+|++.++|-+|
T Consensus 13 f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~T 88 (248)
T COG1116 13 FGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLT 88 (248)
T ss_pred eCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCcccC--CCCCCEEEEeccCcccchhh
Confidence 345789999999999999999999999999999999999887 56899999999873 33556899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
|+||+.|+...+. ...+++++++++.++.+||.+..|.. +.+|||||||||+|||||+.+|+||+||||.+.
T Consensus 89 v~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgA 160 (248)
T COG1116 89 VLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160 (248)
T ss_pred HHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcch
Confidence 9999999877653 34456667899999999999999886 468999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 999 LDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
||+.|+..+++.+.++. +.++|||++|||.+ |...++|||++|.++
T Consensus 161 LDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 161 LDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred hhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 99999999999999986 45899999999987 677889999999864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=352.64 Aligned_cols=210 Identities=25% Similarity=0.343 Sum_probs=186.7
Q ss_pred cccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccC
Q 000562 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQN 910 (1419)
Q Consensus 834 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~ 910 (1419)
+.++.++.+.+++|+|++|++||+++++|||||||||+|++|.+... +.+|+|.+||.++.. ...||.+|||-|+
T Consensus 6 nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQq 83 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQ 83 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhh
Confidence 33445567889999999999999999999999999999999999877 569999999998754 4678899999999
Q ss_pred CCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc--ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 911 d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~--~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
-.+||++||.||+.+-..+. ..++++.+++++|+++++||.+ +++.. +++|||||+|||.+||||+++|+
T Consensus 84 igLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ 155 (309)
T COG1125 84 IGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPP 155 (309)
T ss_pred cccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCC
Confidence 99999999999998876554 4566777889999999999975 66655 56899999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||+||||.+.|||-++..+++-++++.++ |+|||++|||.+ |.+.++||+++|+ +|+++..+++.
T Consensus 156 ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 156 ILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred eEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 99999999999999999999999999755 999999999987 7889999999998 57998888753
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=378.49 Aligned_cols=217 Identities=29% Similarity=0.430 Sum_probs=194.1
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC-ceEEEEccCCCCCCCCCHHH
Q 000562 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-RTSAYVSQQDWQVAEMTVRE 228 (1419)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 228 (1419)
+|+|+|++|++||+++|+|||||||||||++|||+.+++ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999876 99999999999998774 89999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000562 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1419)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1419)
||.|+.+.++... .+.+.+++++.+.|+|++..|... ++||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~P-----~~LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRKP-----LQLS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcCc-----ccCC
Confidence 9999988764321 123456889999999999888654 5799
Q ss_pred hHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000562 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1419)
Q Consensus 309 GGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 388 (1419)
|||||||++||||+.+|++++||||+|.||...+.++...++++.+.+ ++|+|.++|+..|+..++|+|.+|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l-~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERL-GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhc-CCcEEEEcCCHHHHHhhCCEEEEEeCCeeee
Confidence 999999999999999999999999999999999999999999987765 4666679999999999999999999999999
Q ss_pred EcChhhHHHHHHhCCCCCCCCCChHHHHH
Q 000562 389 QGPRVSVLDFFASMGFSCPKRKNVADFLQ 417 (1419)
Q Consensus 389 ~G~~~~~~~~F~~~G~~~p~~~~~adfl~ 417 (1419)
.|++.++ |..|.+.-+|.|+-
T Consensus 215 ~g~p~el--------y~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLEL--------YERPANLFVAGFIG 235 (338)
T ss_pred cCChHHH--------hhCccchhhhhhcC
Confidence 9999998 45677777777763
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=351.45 Aligned_cols=208 Identities=28% Similarity=0.395 Sum_probs=179.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIH 913 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~ 913 (1419)
+++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.+||..+.. +.+++.+||++|++.+
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 57899999999999999999999999999999999999765 568999999976432 3467889999999999
Q ss_pred CCCccHHHHHHHHhhhcCC-----CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 914 SPGLTVLESLLFSAWLRLP-----SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~-----~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
.+.++|.+|++.+..-+.+ -....++.+..+-+.++.+|+.+.+-...+ .|||||+|||+|||+|+.+|+
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~-----~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS-----TLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc-----cCCcchhHHHHHHHHHhcCCC
Confidence 9999999999876432222 122234455667889999999988776643 799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
|++.|||+++|||.++..||+.|+++++ .|.|||++.||.+. ..++|||++-|++ |+++|+||..+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~~-G~ivfDg~~~e 234 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLKA-GRIVFDGPASE 234 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEecC-CcEEEeCChhh
Confidence 9999999999999999999999999975 48999999999874 6688999999985 89999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=358.71 Aligned_cols=223 Identities=30% Similarity=0.435 Sum_probs=188.8
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCc---cCCCCCC-CceEEEEccCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEFVP-PRTSAYVSQQDWQVA 222 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~~~ 222 (1419)
...+++|||+.|+.||+++++|||||||||||++|||+..|+ +|.|.+||. +.+.... .|.+|||+|+..+|+
T Consensus 14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 346899999999999999999999999999999999999887 999999999 5555333 489999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
+|||.+||.|+.+++.. +. +..+.+.+++++|+.+.|++.++ +
T Consensus 91 HmtVa~NIAFGl~~~~~--~p------------------------------~~~~~r~rv~elL~lvqL~~la~-----r 133 (345)
T COG1118 91 HMTVADNIAFGLKVRKE--RP------------------------------SEAEIRARVEELLRLVQLEGLAD-----R 133 (345)
T ss_pred cchHHhhhhhccccccc--CC------------------------------ChhhHHHHHHHHHHHhcccchhh-----c
Confidence 99999999999876511 00 01123456888999999988765 5
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
++..|||||||||++||||+..|++|+||||+++||.+.+.++-+.|+++....+.| .+.++|+..|+++++|+|++|+
T Consensus 134 yP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~t-tvfVTHD~eea~~ladrvvvl~ 212 (345)
T COG1118 134 YPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELADRVVVLN 212 (345)
T ss_pred CchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCce-EEEEeCCHHHHHhhcceEEEec
Confidence 567899999999999999999999999999999999999999999999987765544 5569999999999999999999
Q ss_pred CCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHH
Q 000562 383 EGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQE 418 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~ 418 (1419)
+|+|...||++++- ..|...-+..|+-+
T Consensus 213 ~G~Ieqvg~p~ev~--------~~P~s~fV~~f~G~ 240 (345)
T COG1118 213 QGRIEQVGPPDEVY--------DHPASRFVARFLGE 240 (345)
T ss_pred CCeeeeeCCHHHHh--------cCCCccceeccccc
Confidence 99999999999983 34555445555443
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=378.66 Aligned_cols=223 Identities=31% Similarity=0.434 Sum_probs=197.8
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 225 (1419)
+..+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+-.+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 457999999999999999999999999999999999999887 9999999999998776 588999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|+.+.+.... +.+.+.+++++|+.++|++.++..+ .
T Consensus 94 V~~NVafGLk~~~~~~---------------------------------~~~i~~rv~e~L~lV~L~~~~~R~p-----~ 135 (352)
T COG3842 94 VEENVAFGLKVRKKLK---------------------------------KAEIKARVEEALELVGLEGFADRKP-----H 135 (352)
T ss_pred HHHHhhhhhhhcCCCC---------------------------------HHHHHHHHHHHHHHcCchhhhhhCh-----h
Confidence 9999999987432111 0112446899999999999777554 5
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.+.. +.|.|.++|+..|++.++|+|++|++|+
T Consensus 136 qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~-giT~i~VTHDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 136 QLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL-GITFVYVTHDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred hhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHhhhccceEEccCCc
Confidence 699999999999999999999999999999999999999999999998877 5666679999999999999999999999
Q ss_pred EEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHh
Q 000562 386 IVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419 (1419)
Q Consensus 386 iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v 419 (1419)
|...|+++++ |..|...-+|+|.-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 5678888888888653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=340.08 Aligned_cols=201 Identities=27% Similarity=0.390 Sum_probs=183.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCccHH
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
++++||||+++.||++||+|+|||||||+|++|++... +.+|.|++||.+... ...++.+|.++.+..++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~--P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI--PDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc--CCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 48999999999999999999999999999999999877 568999999998543 45678899999888889999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|||.|.+.+.. ....+.+++.+++.+.++|.++.|+.+| ++|.|+||||.|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 99999998873 4456667889999999999999999876 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
..+.+.+.+.++++.+.|++||+++|.++ ++...||+++++++ |++++.|...
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 99999999999999988999999999986 68789999999996 7999999863
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=359.51 Aligned_cols=209 Identities=29% Similarity=0.424 Sum_probs=187.4
Q ss_pred ccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCc---cCCc-ccccceEEEEccCCC
Q 000562 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-ETFARISGYCEQNDI 912 (1419)
Q Consensus 837 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~d~ 912 (1419)
+..+...+++|||+.|+.||++||+|||||||||||++|||..+ +..|.|.+||. +..+ ....|.+|||+|+..
T Consensus 10 ~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~--p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 10 KRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET--PDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred hhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC--CCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 34456789999999999999999999999999999999999987 56899999999 5443 345678999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
++++|||.+|+.|+..++ ....+..+.+.+++|+++++.|+++.+.. +.+|||||||||++||||+..|++|+|
T Consensus 88 LF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLL 161 (345)
T COG1118 88 LFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLL 161 (345)
T ss_pred hcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEee
Confidence 999999999999998877 33345567788899999999999999876 468999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|||.++||+.-+..+.+.|+++.+. |.|+|++|||+. ++.+.+|||++|++ |+++..||..
T Consensus 162 DEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 162 DEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred cCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999999866 999999999986 79999999999996 7999999874
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=362.42 Aligned_cols=210 Identities=32% Similarity=0.456 Sum_probs=181.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
++||+|+|+.+++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+... .|.+|||||.+...+.+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~ 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence 47999999999999999999999999999999999999876 9999999999887654 37899999998888899
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+|-+.++..-.. ..+ ....++....+++.|+.+|+.+.++..+.
T Consensus 92 tV~d~V~~GR~p~~--~~~----------------------------~~~~~~D~~~v~~aL~~~~~~~la~r~~~---- 137 (258)
T COG1120 92 TVYELVLLGRYPHL--GLF----------------------------GRPSKEDEEIVEEALELLGLEHLADRPVD---- 137 (258)
T ss_pred EEeehHhhcCCccc--ccc----------------------------cCCCHhHHHHHHHHHHHhCcHHHhcCccc----
Confidence 99999998743210 000 00011122357889999999999987775
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||.|||||+.+|++|+||||||+||...+.++++.+++++++. +.++|.++|+...+..+||++++|++|
T Consensus 138 -~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~-~~tvv~vlHDlN~A~ryad~~i~lk~G 215 (258)
T COG1120 138 -ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREK-GLTVVMVLHDLNLAARYADHLILLKDG 215 (258)
T ss_pred -ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 599999999999999999999999999999999999999999999999764 566667889999999999999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
+++.+|++++++
T Consensus 216 ~i~a~G~p~evl 227 (258)
T COG1120 216 KIVAQGTPEEVL 227 (258)
T ss_pred eEEeecCcchhc
Confidence 999999998875
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=399.04 Aligned_cols=208 Identities=26% Similarity=0.371 Sum_probs=180.1
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|+++.. ...++.+|||+|++.+++.+|
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~--PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LT 1019 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP--PTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLT 1019 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC--CCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCC
Confidence 4679999999999999999999999999999999999876 468999999988643 234567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
|+|++.|.++++.. ..++.++.++++++.++|.+..+..+ +.|||||||||+||+||+.+|+||+|||||+|
T Consensus 1020 V~E~L~f~~~lkg~---~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqKQRLsLArALi~~PkVLLLDEPTSG 1091 (2272)
T TIGR01257 1020 VAEHILFYAQLKGR---SWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSG 1091 (2272)
T ss_pred HHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcC
Confidence 99999998776532 22334567889999999998887764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHHHH
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYF 1065 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~~f 1065 (1419)
||+.+++.+++.|++++ +|+|||+++|+++ ++...+||+++|++ |+++..|+. ..+.+.|
T Consensus 1092 LDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~Gs~----~~Lk~~~ 1151 (2272)
T TIGR01257 1092 VDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSGTP----LFLKNCF 1151 (2272)
T ss_pred CCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCH----HHHHHhc
Confidence 99999999999999985 5999999999986 56678999999985 799999975 3455444
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=375.16 Aligned_cols=212 Identities=33% Similarity=0.474 Sum_probs=185.7
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC--CCCceEEEEccCCCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 224 (1419)
++.+|+|||+.+++|++++|+||||||||||||+|+|++.|+ +|+|.++|.+.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 357999999999999999999999999999999999999885 99999999887652 3457899999999999999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+|||.|.+.+.+.... ....+++++++.+||++..++.+
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~----- 134 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKKV----- 134 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcch-----
Confidence 999999999888754310 01235788999999998544444
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
++||+||||||+||.||+++|+++||||||+|||+.++.++.+.|+++++. ++++|+..+|...++..+||+|++|++|
T Consensus 135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~-g~~tvlissH~l~e~~~~~d~v~il~~G 213 (293)
T COG1131 135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKE-GGVTILLSTHILEEAEELCDRVIILNDG 213 (293)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhC-CCcEEEEeCCcHHHHHHhCCEEEEEeCC
Confidence 579999999999999999999999999999999999999999999999875 4467777899999999999999999999
Q ss_pred eEEEEcChhhHHHHHHh
Q 000562 385 QIVYQGPRVSVLDFFAS 401 (1419)
Q Consensus 385 ~iv~~G~~~~~~~~F~~ 401 (1419)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999987765543
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=351.41 Aligned_cols=192 Identities=30% Similarity=0.458 Sum_probs=167.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------c-cccceEEEEccCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------E-TFARISGYCEQNDIHS 914 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~-~~~~~~gyv~Q~d~~~ 914 (1419)
..+|++||++|++||++||||||||||||||++|.|... +.+|.|.++|.+... . -+++.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~--pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK--PTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 579999999999999999999999999999999999877 468999999976532 1 2345799999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccC-CcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~-~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
|.+||+||+.+...+.... ....++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999876554322 2245667889999999987665 43 4589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
|||.+||+.++..|++.+++++++ |+|||++|||| ++...+||++.|.+|
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~dG 218 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDG 218 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeCC
Confidence 999999999999999999999865 89999999996 477899999999974
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=341.48 Aligned_cols=210 Identities=24% Similarity=0.353 Sum_probs=179.9
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1419)
.+.||+|||+.|++||+++|+|||||||||||+.|.|+++|+ +|+|.++|+++..... ++++|+++|+-.+
T Consensus 20 ~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gAL 96 (263)
T COG1127 20 DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96 (263)
T ss_pred CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeecccc
Confidence 357999999999999999999999999999999999999887 9999999999876543 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
|..+||+||+.|..+-... .|+. ..+..+..-|+..||... ++
T Consensus 97 FssltV~eNVafplre~~~-------------------lp~~--------------~i~~lv~~KL~~VGL~~~----~~ 139 (263)
T COG1127 97 FSSLTVFENVAFPLREHTK-------------------LPES--------------LIRELVLMKLELVGLRGA----AA 139 (263)
T ss_pred ccccchhHhhheehHhhcc-------------------CCHH--------------HHHHHHHHHHHhcCCChh----hh
Confidence 9999999999996543211 1111 122335556788999765 23
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+.++..||||++||+++|||++.+|+++|+||||+||||.++..+.+.++++.+.++ .|+++++|+.++++..+|+|++
T Consensus 140 ~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg-~T~i~VTHDl~s~~~i~Drv~~ 218 (263)
T COG1127 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALG-LTVIMVTHDLDSLLTIADRVAV 218 (263)
T ss_pred hhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhC-CEEEEEECChHHHHhhhceEEE
Confidence 456677999999999999999999999999999999999999999999999988775 4555699999999999999999
Q ss_pred EcCCeEEEEcChhhHHH
Q 000562 381 LSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~~ 397 (1419)
|.+|+|+.+|+++++.+
T Consensus 219 L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 219 LADGKVIAEGTPEELLA 235 (263)
T ss_pred EeCCEEEEeCCHHHHHh
Confidence 99999999999999864
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=371.43 Aligned_cols=208 Identities=27% Similarity=0.365 Sum_probs=186.6
Q ss_pred cccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCC
Q 000562 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 836 ~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~ 914 (1419)
.+.++...+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.|+|.+++. ....|.+++|+|+..++
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALy 87 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALY 87 (338)
T ss_pred EEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCcccc
Confidence 334444449999999999999999999999999999999999877 579999999998876 44568899999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
|++||+||+.|+.+.+. .++++.+++|+++.+.|+|.++.|.. +++|||||||||+|||||+++|++++|||
T Consensus 88 PhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DE 159 (338)
T COG3839 88 PHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDE 159 (338)
T ss_pred CCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999987763 35567788999999999999999986 35899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|.|+||+..+..+...|+++.++ |.|+|.+|||.. |...++||+++|. +|++...|++.
T Consensus 160 PlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~-~G~i~Q~g~p~ 219 (338)
T COG3839 160 PLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMN-DGRIQQVGTPL 219 (338)
T ss_pred chhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEe-CCeeeecCChH
Confidence 99999999999999999998755 899999999974 7889999999999 58999999864
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=350.61 Aligned_cols=206 Identities=28% Similarity=0.438 Sum_probs=176.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccC---CCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQ---DWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 225 (1419)
++|+|||+.+++|++++|+||||||||||+|+|.|.+.|. +|+|.++|.+......+..+|||||. |+-|| .|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 4999999999999999999999999999999999999876 99999999988777667899999994 55555 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+|.+..+..-+. ...+.. ..+....++++|+.+|+.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~~--g~~~~~----------------------------~~~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK--GWFRRL----------------------------NKKDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc--cccccc----------------------------cHHHHHHHHHHHHHcCchhhhCCcccc----
Confidence 9999987632211 001100 011134689999999999999998885
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
|||||+|||-|||||+++|++|+|||||+|+|+.++..|.+.|+++.++ +.+|++++|+...+.+.||+|++|+. +
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~vtHDL~~v~~~~D~vi~Ln~-~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLMVTHDLGLVMAYFDRVICLNR-H 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCcHHhHhhCCEEEEEcC-e
Confidence 9999999999999999999999999999999999999999999999875 56677799999999999999999965 7
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 88999998875
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=347.46 Aligned_cols=192 Identities=24% Similarity=0.356 Sum_probs=170.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
..+|+|||++|.+||+++|+|||||||||||++|+|+..|+ +|+|.++|.++ ..+...++||+|++.++|-+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v--~~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPV--TGPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCccc--CCCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999876 99999999988 34667899999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.|+....+... .+...+++..|+.+||.+..|.. +..|
T Consensus 91 ~NV~l~l~~~~~~~----------------------------------~e~~~~a~~~L~~VgL~~~~~~~-----P~qL 131 (248)
T COG1116 91 DNVALGLELRGKSK----------------------------------AEARERAKELLELVGLAGFEDKY-----PHQL 131 (248)
T ss_pred hhheehhhccccch----------------------------------HhHHHHHHHHHHHcCCcchhhcC-----cccc
Confidence 99999887654211 11123578899999999887754 5579
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+.. +.||+.++|+.+|+..++|||++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~-~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET-RKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhh-CCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 9999999999999999999999999999999999999999999988764 566777999999999999999999983
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=335.83 Aligned_cols=221 Identities=25% Similarity=0.376 Sum_probs=181.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCCC-----CCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1419)
+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.++|+++-+.. .|+++|+|+|.|.-
T Consensus 20 ~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnP 99 (253)
T COG1117 20 KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNP 99 (253)
T ss_pred hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCC
Confidence 469999999999999999999999999999999987644 35678999999999886532 36899999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc-cccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLV 299 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~v 299 (1419)
|| +|++||+.|+.+..|... +.+ +++++..|+.-+|-+ ..|.+
T Consensus 100 Fp-~SIydNVayG~r~~g~~~--~~l--------------------------------deiVe~sLk~AaLWdEVKDrL- 143 (253)
T COG1117 100 FP-MSIYDNVAYGLRLHGIKD--KEL--------------------------------DEIVESSLKKAALWDEVKDRL- 143 (253)
T ss_pred CC-chHHHHHHHhHHhhccch--HHH--------------------------------HHHHHHHHHHhHhHHHhHHHh-
Confidence 88 899999999998876532 111 123444455555532 23332
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
++...+|||||+||++|||||+-+|+||+||||||+|||.++.+|-+++.++.+ .-||++++|....+....|+..
T Consensus 144 -~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~---~yTIviVTHnmqQAaRvSD~ta 219 (253)
T COG1117 144 -HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK---KYTIVIVTHNMQQAARVSDYTA 219 (253)
T ss_pred -hCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh---ccEEEEEeCCHHHHHHHhHhhh
Confidence 123457999999999999999999999999999999999999999999999874 4667779999999999999999
Q ss_pred EEcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHH
Q 000562 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl 416 (1419)
.+..|+++++|+.+++ |.-|.++...||.
T Consensus 220 Ff~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 220 FFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 9999999999999887 4567766666654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=331.69 Aligned_cols=206 Identities=28% Similarity=0.342 Sum_probs=183.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
..+++||||.++.||+++|+|||||||||+|++|++++.|+ +|+|+++|.+....+ .++.+|.++.+..++..||
T Consensus 15 v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT 91 (245)
T COG4555 15 VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLT 91 (245)
T ss_pred HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcChhhhhh
Confidence 45899999999999999999999999999999999999887 999999999875433 3688999998888899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
++|||.|.+++.+.. +.+.+.+++++.+.|+|..|.|+.+|+
T Consensus 92 ~rEnl~~Fa~L~~l~----------------------------------~~~~kari~~l~k~l~l~~~~~rRv~~---- 133 (245)
T COG4555 92 ARENLKYFARLNGLS----------------------------------RKEIKARIAELSKRLQLLEYLDRRVGE---- 133 (245)
T ss_pred HHHHHHHHHHHhhhh----------------------------------hhHHHHHHHHHHHHhChHHHHHHHHhh----
Confidence 999999988765321 122355788999999999999999985
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .+.+|+..+|..+|+.++||+|++|++|+
T Consensus 134 -~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~--egr~viFSSH~m~EvealCDrvivlh~Ge 210 (245)
T COG4555 134 -FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN--EGRAVIFSSHIMQEVEALCDRVIVLHKGE 210 (245)
T ss_pred -hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc--CCcEEEEecccHHHHHHhhheEEEEecCc
Confidence 999999999999999999999999999999999999999999998864 36677789999999999999999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
+++.|+.+++..
T Consensus 211 vv~~gs~~~l~~ 222 (245)
T COG4555 211 VVLEGSIEALDA 222 (245)
T ss_pred EEEcCCHHHHHH
Confidence 999999987753
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=371.24 Aligned_cols=211 Identities=26% Similarity=0.376 Sum_probs=188.0
Q ss_pred cccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCC
Q 000562 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDI 912 (1419)
Q Consensus 834 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~ 912 (1419)
+.++.++...+|+|||++|++||+++|+|||||||||||++|||... +.+|+|.++|.++.. ...+|.+|+|+|+..
T Consensus 10 ~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~--p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YA 87 (352)
T COG3842 10 NVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ--PSSGEILLDGEDITDVPPEKRPIGMVFQSYA 87 (352)
T ss_pred eeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhhcccceeecCcc
Confidence 34445667889999999999999999999999999999999999887 568999999998765 345788999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+||+|||+||+.|+.+++. ....++.+++|+++++.++|.+.++.. +.+|||||||||+|||||+.+|++|+|
T Consensus 88 LFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLL 160 (352)
T COG3842 88 LFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLL 160 (352)
T ss_pred cCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhh
Confidence 9999999999999987442 334456778999999999999988876 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|||.|+||..-+..+..-++++.++ |.|.|++|||.. +...++|||.+|++ |++...|++.
T Consensus 161 DEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~-G~I~Q~gtP~ 222 (352)
T COG3842 161 DEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMND-GRIEQVGTPE 222 (352)
T ss_pred cCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccC-CceeecCCHH
Confidence 9999999999999999999999754 999999999976 78899999999985 8999999864
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=334.71 Aligned_cols=215 Identities=25% Similarity=0.355 Sum_probs=180.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1419)
+++|+|||+.|++||+++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|++.+.
T Consensus 17 ~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 17 HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 47999999999999999999999999999999999988776 9999999988765542 47899999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||.||+..+..-+ .+.+ ....+..+. +.+..+-..|+.+|+.+.+.+..+
T Consensus 94 ~r~sv~~NVl~grl~~--~s~~---------~slfglfsk---------------~dk~~Al~aLervgi~~~A~qra~- 146 (258)
T COG3638 94 PRLSVLENVLLGRLGY--TSTW---------RSLFGLFSK---------------EDKAQALDALERVGILDKAYQRAS- 146 (258)
T ss_pred cccHHHHHHHhhhccc--chHH---------HHHhCCCCH---------------HHHHHHHHHHHHcCcHHHHHHHhc-
Confidence 9999999998864321 1111 112222222 223445678999999998887776
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
+|||||+|||+|||||+.+|++++-|||+++||+.++.++++.|++++...| .|++..+|..+-+.++||||+-|
T Consensus 147 ----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA~~Y~~Riigl 221 (258)
T COG3638 147 ----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLAKKYADRIIGL 221 (258)
T ss_pred ----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHHHHHHhhheEe
Confidence 4999999999999999999999999999999999999999999999998754 45555778889999999999999
Q ss_pred cCCeEEEEcChhhHHH
Q 000562 382 SEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~~ 397 (1419)
++|+|+|.||++++-+
T Consensus 222 ~~G~ivfDg~~~el~~ 237 (258)
T COG3638 222 KAGRIVFDGPASELTD 237 (258)
T ss_pred cCCcEEEeCChhhhhH
Confidence 9999999999988653
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=331.22 Aligned_cols=206 Identities=26% Similarity=0.361 Sum_probs=178.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCC---CCceEEEEEEECCccCCc-----ccccceEEEEccCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d 911 (1419)
+.+++|+|||+.|++++++|++|||||||||||++|.+.. ++-.++|+|.++|.++.. ..+|+.+|.|+|.|
T Consensus 18 g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkP 97 (253)
T COG1117 18 GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97 (253)
T ss_pred CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCC
Confidence 5678999999999999999999999999999999999853 234678999999987643 35788999999999
Q ss_pred CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 912 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
.-|| +|++||+.|+.++..-.+ ++-++.|++.++...|.+ ..|.+-.. ..+|||||+|||||||+|+.+|+||
T Consensus 98 nPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL~~s--a~~LSGGQQQRLcIARalAv~PeVl 171 (253)
T COG1117 98 NPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRLHKS--ALGLSGGQQQRLCIARALAVKPEVL 171 (253)
T ss_pred CCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHhhCC--ccCCChhHHHHHHHHHHHhcCCcEE
Confidence 9999 999999999988775433 566778899888888864 34444322 3479999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+||||||+|||.+...|.++|.+|+ +.-|||++||.+. ...+..|+...+.. |+++.+|+.
T Consensus 172 LmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G~LvE~g~T 232 (253)
T COG1117 172 LMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-GELVEFGPT 232 (253)
T ss_pred EecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-cEEEEEcCH
Confidence 9999999999999999999999997 5799999999986 57788999999986 799999996
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=339.08 Aligned_cols=196 Identities=27% Similarity=0.430 Sum_probs=166.9
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1419)
..++|+|||+.|++||+++|+|||||||||||++|+|...|+ +|+|.++|.++..... ++.+|||+|+..
T Consensus 17 ~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~n 93 (226)
T COG1136 17 KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFN 93 (226)
T ss_pred ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCC
Confidence 368999999999999999999999999999999999998875 9999999998876542 367999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccc-cc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD-TL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d-t~ 298 (1419)
++|++||+||+..+..+.+.... .....++.+++.+||.+..+ ..
T Consensus 94 Ll~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~ 139 (226)
T COG1136 94 LLPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKK 139 (226)
T ss_pred CCCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCC
Confidence 99999999999987665543211 01234678899999987655 44
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ ..|||||||||+|||||+.+|++++.||||.+||+.++..|++.++++++.. ++++++++|+ +++...|||+
T Consensus 140 p-----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~-g~tii~VTHd-~~lA~~~dr~ 212 (226)
T COG1136 140 P-----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER-GKTIIMVTHD-PELAKYADRV 212 (226)
T ss_pred c-----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhc-CCEEEEEcCC-HHHHHhCCEE
Confidence 4 4699999999999999999999999999999999999999999999998764 5556656666 5677899999
Q ss_pred EEEcCCeE
Q 000562 379 ILLSEGQI 386 (1419)
Q Consensus 379 ilL~~G~i 386 (1419)
+.|.+|++
T Consensus 213 i~l~dG~~ 220 (226)
T COG1136 213 IELKDGKI 220 (226)
T ss_pred EEEeCCee
Confidence 99999994
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=366.11 Aligned_cols=203 Identities=29% Similarity=0.400 Sum_probs=178.4
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++..+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+|||+|++.+++.+
T Consensus 18 ~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~--p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~ 95 (306)
T PRK13537 18 GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH--PDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDF 95 (306)
T ss_pred CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEecccchHHHHhcEEEEeccCcCCCCC
Confidence 34679999999999999999999999999999999999876 468999999998643 23567899999999999999
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+|++.|.+.++. ....+..++++++++.++|.+..++.+ ++||+|||||++||+||+.+|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 96 TVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 99999998776542 223334456789999999988887765 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 222 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGAP 222 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999878999999999986 57788999999985 799999985
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=319.43 Aligned_cols=201 Identities=27% Similarity=0.365 Sum_probs=175.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~ 914 (1419)
+..+|+||||+|++||++-|+||||||||||||+|.+... +..|+|.++|+++.. .-.+|.+|+|+||..+.
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 3569999999999999999999999999999999999766 568999999998643 23578999999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
++.||+||+.|...... .+..+.+++|.++++.+||.+.++.+ +..|||||+||++||||++.+|++|+.||
T Consensus 92 ~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADE 163 (223)
T COG2884 92 PDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADE 163 (223)
T ss_pred ccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecC
Confidence 99999999999876653 34456677899999999999988776 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhc-CeEEEEecCCEEEEeCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF-DELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~-D~v~~l~~gG~~~~~G~~ 1054 (1419)
||-+||+..+..|++++.++.+.|.|||+.|||. ++.+.. .+++.|.+ |+++.+...
T Consensus 164 PTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~~-Grl~~d~~~ 221 (223)
T COG2884 164 PTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALED-GRLVRDESR 221 (223)
T ss_pred CCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEeC-CEEEecccc
Confidence 9999999999999999999999999999999995 455544 67888875 788876543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=380.41 Aligned_cols=214 Identities=26% Similarity=0.416 Sum_probs=177.3
Q ss_pred cCCCcceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCC
Q 000562 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD 218 (1419)
Q Consensus 142 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 218 (1419)
++.+++.+||+|+|++|+|||.+||+|||||||||+.+.|-.+++|. +|+|++||+|+.+.++ ++.+|+|.|+|
T Consensus 475 YP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEP 551 (716)
T KOG0058|consen 475 YPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEP 551 (716)
T ss_pred cCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccc
Confidence 55667789999999999999999999999999999999999999886 9999999999998876 58999999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccc
Q 000562 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1419)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1419)
.+|. .||+|||.|+.. ....+.+..+++.. ...+. +.++++.+||.
T Consensus 552 vLFs-~sI~eNI~YG~~----~~t~e~i~~AAk~A--------------------------Nah~F---I~~~p~gY~T~ 597 (716)
T KOG0058|consen 552 VLFS-GSIRENIAYGLD----NATDEEIEAAAKMA--------------------------NAHEF---ITNFPDGYNTV 597 (716)
T ss_pred eeec-ccHHHHHhcCCC----CCCHHHHHHHHHHh--------------------------ChHHH---HHhCccccccc
Confidence 9775 599999999754 11112222222110 01122 34689999999
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
||+++. .||||||||++|||||+++|+||+|||.||+||+.+...+.+.|.+..+ +.||++|.|..+ +.+.+|+|
T Consensus 598 VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~---~rTVlvIAHRLS-TV~~Ad~I 672 (716)
T KOG0058|consen 598 VGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ---GRTVLVIAHRLS-TVRHADQI 672 (716)
T ss_pred cCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc---CCeEEEEehhhh-HhhhccEE
Confidence 998665 6999999999999999999999999999999999999999999987754 355555766654 55789999
Q ss_pred EEEcCCeEEEEcChhhHHH
Q 000562 379 ILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1419)
+++++|++++.|+++|+++
T Consensus 673 vvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 673 VVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEEcCCeEEecccHHHHhh
Confidence 9999999999999999874
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=362.83 Aligned_cols=206 Identities=22% Similarity=0.345 Sum_probs=178.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1419)
+++|+|||+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999876 9999999998876532 46799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.|+....+... .+...++.++++.+||++..|..+
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~v~e~l~~vgL~~~~~~~~-- 138 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTPK----------------------------------DEIKRKVTELLALVGLGDKHDSYP-- 138 (343)
T ss_pred ccCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh--
Confidence 99999999998654322110 011234678899999998777655
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
+.|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+.. +.+|+.++|+.+.+.++||+|++|
T Consensus 139 ---~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~-g~tiiliTH~~~~v~~~~d~v~vl 214 (343)
T TIGR02314 139 ---SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL-GLTILLITHEMDVVKRICDCVAVI 214 (343)
T ss_pred ---hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999987654 455666899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998873
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=327.05 Aligned_cols=213 Identities=22% Similarity=0.322 Sum_probs=187.6
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEc
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCE 908 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~ 908 (1419)
++..+++++++++++||+.+++||+++|+|||||||||.+.++.|... +.+|.|.+||.+++.. ..+.-+||.|
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~--~d~G~i~ld~~diT~lPm~~RArlGigYLp 85 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR--PDSGKILLDDEDITKLPMHKRARLGIGYLP 85 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe--cCCceEEECCcccccCChHHHhhcCccccc
Confidence 345566788999999999999999999999999999999999999876 4689999999987642 2234589999
Q ss_pred cCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 909 Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
|++..|-.+||+||++-....+.. +....+++++.+++++.+++.|+++... ..||||||||+.|||||+.+|+
T Consensus 86 QE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 86 QEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred ccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCC
Confidence 999999999999999877666532 2233456667889999999999999763 3699999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
.++||||.+|+||-+...|.++++.|++.|.-|++|-|... +....+||.+++.+ |++...|.++
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 99999999999999999999999999999999999999987 78899999999996 7999999864
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=390.64 Aligned_cols=256 Identities=30% Similarity=0.455 Sum_probs=202.2
Q ss_pred hHhhHHHHHHHhhcccCChHHHHHHHHHHHHhcCCCCCC--cEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHH
Q 000562 61 VQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPK--IEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQL 138 (1419)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 138 (1419)
.++-+...+|+.++.+.++|.-.. +.....|+ =+++|+|+++.=
T Consensus 436 ~q~~~~~~~rL~dil~~~~E~~~~-------~~~~~~~~~~g~I~~~nvsf~y--------------------------- 481 (709)
T COG2274 436 FQQAKVALERLGDILDTPPEQEGD-------KTLIHLPKLQGEIEFENVSFRY--------------------------- 481 (709)
T ss_pred HHHHHHHHHHHHHHhcCCcccccc-------cccccccccCceEEEEEEEEEe---------------------------
Confidence 467888899999999988883211 11123333 479999999652
Q ss_pred HHhcCCCcceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEc
Q 000562 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVS 215 (1419)
Q Consensus 139 ~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~ 215 (1419)
.. .+..+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ ++.++||+
T Consensus 482 ----~~-~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 482 ----GP-DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred ----CC-CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEc
Confidence 11 1226999999999999999999999999999999999999886 9999999999988765 58999999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccc
Q 000562 216 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1419)
Q Consensus 216 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1419)
|++.+| +.||+|||.++.. ....+.+.++|+ +.+. .+. +..++..+
T Consensus 554 Q~~~Lf-~gSI~eNi~l~~p----~~~~e~i~~A~~---------------------~ag~-----~~f---I~~lP~gy 599 (709)
T COG2274 554 QDPFLF-SGSIRENIALGNP----EATDEEIIEAAQ---------------------LAGA-----HEF---IENLPMGY 599 (709)
T ss_pred ccchhh-cCcHHHHHhcCCC----CCCHHHHHHHHH---------------------HhCc-----HHH---HHhccccc
Confidence 999855 5699999988642 111222222222 1111 111 44689999
Q ss_pred cccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 000562 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1419)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 375 (1419)
||.||+ +..+||||||||++|||||+++|+||+||||||+||+.+...|.+.|.++.+ ++|+|+ ++|. ..+.+.+
T Consensus 600 ~t~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~-IaHR-l~ti~~a 674 (709)
T COG2274 600 DTPVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVII-IAHR-LSTIRSA 674 (709)
T ss_pred cccccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEE-EEcc-chHhhhc
Confidence 999996 4568999999999999999999999999999999999999999999998864 455555 4444 4567899
Q ss_pred CeEEEEcCCeEEEEcChhhHHH
Q 000562 376 DDVILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 376 D~vilL~~G~iv~~G~~~~~~~ 397 (1419)
|+|++|++|+++.+|+++|+.+
T Consensus 675 drIiVl~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 675 DRIIVLDQGKIVEQGSHEELLA 696 (709)
T ss_pred cEEEEccCCceeccCCHHHHHH
Confidence 9999999999999999999875
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=348.31 Aligned_cols=203 Identities=27% Similarity=0.376 Sum_probs=173.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~ 914 (1419)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 12 GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR--PDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 3569999999999999999999999999999999999876 468999999987542 23456799999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
+.+||+|++.+...... ....++..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|+||+|||
T Consensus 90 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDE 162 (235)
T cd03261 90 DSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDE 162 (235)
T ss_pred CCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999988653221 1233344567888999999987766654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 99999999999999999999864 899999999986 46778999999985 799998875
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=366.22 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=178.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++||
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 16 KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 4579999999999999999999999999999999999876 568999999987643 2234789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|....+. .+..+..++++++++.++|.+..+..+ ..|||||||||+|||||+.+|++|+||||||+|
T Consensus 94 ~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvalARAL~~~P~llLLDEP~s~L 165 (356)
T PRK11650 94 RENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165 (356)
T ss_pred HHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999865432 234455567899999999998887764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+.++..+.+.|+++.++ |.|+|++|||+. ++...+|++++|++ |+++..|+..
T Consensus 166 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~-G~i~~~g~~~ 220 (356)
T PRK11650 166 DAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNG-GVAEQIGTPV 220 (356)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEECCHH
Confidence 999999999999999765 899999999986 68889999999985 8999999863
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=365.30 Aligned_cols=204 Identities=26% Similarity=0.391 Sum_probs=179.8
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCcc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...+|.+|||+|+..++|++|
T Consensus 15 ~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCc
Confidence 34579999999999999999999999999999999999876 568999999987643 234577999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
|+||+.|+...+ ..+..+.+++++++++.++|.++.+... ..|||||||||+|||+|+.+|++++|||||||
T Consensus 93 v~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~ 164 (353)
T TIGR03265 93 VADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQRVALARALATSPGLLLLDEPLSA 164 (353)
T ss_pred HHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 999999986543 2334555678899999999999887654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|++.
T Consensus 165 LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~~~ 220 (353)
T TIGR03265 165 LDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGTPQ 220 (353)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999998765 899999999986 68889999999985 7999999863
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=364.76 Aligned_cols=206 Identities=27% Similarity=0.370 Sum_probs=179.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+++ +|+|.++|.++....+ ++.++||+|++.+++++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 35999999999999999999999999999999999998876 9999999998876543 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.|+.+..+.. + .+...+++++++.+||++..|..+ +.
T Consensus 94 ~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------K------------------------AEIEERVAEAARILELEPLLDRKP-----RE 134 (356)
T ss_pred HHHHHhHHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhHhhCCh-----hh
Confidence 99999976532210 0 011234678999999988777655 46
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++|+||||||+||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRL-KTTSLYVTHDQVEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999987643 56677799999999999999999999999
Q ss_pred EEEcChhhHH
Q 000562 387 VYQGPRVSVL 396 (1419)
Q Consensus 387 v~~G~~~~~~ 396 (1419)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999998874
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-37 Score=328.38 Aligned_cols=205 Identities=25% Similarity=0.307 Sum_probs=175.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC----CCceEEEEccCC--CCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQD--WQVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 222 (1419)
++|+|||+++.+||..+|+|+||||||||.++|+|..+|+ +|+|.++|.+..... ..+.+-+|+||+ .+-|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999886 999999998776543 357889999997 4678
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
..||++.|.-+.+..+.+ +.+.++.++|+.+||+...- ++
T Consensus 98 ~~tv~~~l~Epl~~~~~~------------------------------------~~~~~i~~~L~~VgL~~~~l----~R 137 (252)
T COG1124 98 RRTVGRILSEPLRPHGLS------------------------------------KSQQRIAELLDQVGLPPSFL----DR 137 (252)
T ss_pred chhHHHHHhhhhccCCcc------------------------------------HHHHHHHHHHHHcCCCHHHH----hc
Confidence 899999987554432211 11233678899999986432 34
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.+..|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+.. +.+.+.++|+..-+..+||||++|+
T Consensus 138 ~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~-~lt~l~IsHdl~~v~~~cdRi~Vm~ 216 (252)
T COG1124 138 RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER-GLTYLFISHDLALVEHMCDRIAVMD 216 (252)
T ss_pred CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhc-CceEEEEeCcHHHHHHHhhheeeee
Confidence 556799999999999999999999999999999999999999999999998764 5667779999999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1419)
+|++++.++.+++.+
T Consensus 217 ~G~ivE~~~~~~l~~ 231 (252)
T COG1124 217 NGQIVEIGPTEELLS 231 (252)
T ss_pred CCeEEEeechhhhhc
Confidence 999999999998864
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=361.30 Aligned_cols=201 Identities=26% Similarity=0.324 Sum_probs=176.4
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~~ 915 (1419)
..+|+|||+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|+..+++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~--p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~ 95 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccc
Confidence 479999999999999999999999999999999999876 5689999999876431 23567999999999999
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
..||+||+.|....+. .+.++.++++.++++.+||.+..|... +.|||||||||+|||||+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSgGqkQRV~IARAL~~~P~iLLlDEP 167 (343)
T TIGR02314 96 SRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred cCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999998765431 234455667899999999998877654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+||+.++..+++.|+++.++ |.|||+++|+++ .+.+.||++++|++ |+++..|+.
T Consensus 168 ts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~-G~iv~~g~~ 225 (343)
T TIGR02314 168 TSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQGTV 225 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999865 999999999976 46688999999985 899999985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=362.99 Aligned_cols=203 Identities=25% Similarity=0.402 Sum_probs=179.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
+..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... ..+|.+|||+|+..++|++||
T Consensus 18 ~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 18 SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK--PTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 4568999999999999999999999999999999999876 5689999999876532 235789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|+...+. ....+.+++++++++.++|.++.+... ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 96 ~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~L 167 (351)
T PRK11432 96 GENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQRVALARALILKPKVLLFDEPLSNL 167 (351)
T ss_pred HHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999999875542 334556678899999999998877653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+.++..+.+.|+++.++ |.|+|++|||++ ++...+|++++|++ |+++..|++.
T Consensus 168 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~~~ 222 (351)
T PRK11432 168 DANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGSPQ 222 (351)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999765 899999999986 68889999999985 7999999863
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=362.19 Aligned_cols=206 Identities=25% Similarity=0.373 Sum_probs=179.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+++ +|+|.++|.++....+ +|.++||+|+..+++++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 35899999999999999999999999999999999999876 9999999998876544 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.|+.+.++... .+.+.+++++++.+||.+..|..+ +.
T Consensus 96 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gl~~~~~r~~-----~~ 136 (351)
T PRK11432 96 GENVGYGLKMLGVPK----------------------------------EERKQRVKEALELVDLAGFEDRYV-----DQ 136 (351)
T ss_pred HHHHHHHHhHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999865432110 011235788999999988776554 46
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++|+||||++|||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF-NITSLYVTHDQSEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987644 45667799999999999999999999999
Q ss_pred EEEcChhhHH
Q 000562 387 VYQGPRVSVL 396 (1419)
Q Consensus 387 v~~G~~~~~~ 396 (1419)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999998873
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=361.26 Aligned_cols=204 Identities=26% Similarity=0.361 Sum_probs=178.1
Q ss_pred ccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCC
Q 000562 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~ 916 (1419)
++++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.
T Consensus 51 y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~--p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 128 (340)
T PRK13536 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS--PDAGKITVLGVPVPARARLARARIGVVPQFDNLDLE 128 (340)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCceEEEECCEECCcchHHHhccEEEEeCCccCCCC
Confidence 345679999999999999999999999999999999999876 468999999987643 2346679999999999999
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
+||+|++.|.+.++. ....+..+.++++++.++|.+..++.+ +.||||||||++||++|+.+|++|+|||||
T Consensus 129 ~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 129 FTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 999999997665442 222334456788999999998887765 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|+.
T Consensus 201 ~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~~ 256 (340)
T PRK13536 201 TGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGRP 256 (340)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999878999999999986 57788999999985 799999985
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=358.66 Aligned_cols=203 Identities=27% Similarity=0.382 Sum_probs=177.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~l 917 (1419)
+++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 81 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR--PTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL 81 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence 34579999999999999999999999999999999999876 468999999987643 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+|++.+.+.++. ....+.++.++++++.++|.+..+..+ +.|||||||||+||+||+.+|++|+|||||+
T Consensus 82 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 82 TGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999998766542 223334556889999999988777764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999878999999999986 57788999999985 799999985
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-37 Score=362.55 Aligned_cols=206 Identities=25% Similarity=0.355 Sum_probs=179.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCee--eEEEECCccCCCCCC-CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS--GKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 225 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ + |+|.++|+++....+ ++.++||+|++.+++++|
T Consensus 19 ~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~t 95 (362)
T TIGR03258 19 TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHLK 95 (362)
T ss_pred EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCCc
Confidence 5999999999999999999999999999999999999876 7 999999998865443 467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|+.+..+... .+.+.+++++++.+||++..|+.++
T Consensus 96 v~enl~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~~~~~----- 136 (362)
T TIGR03258 96 VEDNVAFGLRAQKMPK----------------------------------ADIAERVADALKLVGLGDAAAHLPA----- 136 (362)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCCchhhCChh-----
Confidence 9999999765332110 0112347889999999988776654
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..++++++.++|+..++..++|+|++|++|+
T Consensus 137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGR 216 (362)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998765435677779999999999999999999999
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999874
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=362.16 Aligned_cols=206 Identities=26% Similarity=0.412 Sum_probs=179.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 35899999999999999999999999999999999998876 9999999998865443 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.|+.+.++.. + .+....++++++.+||++..|..+ +.
T Consensus 94 ~eNi~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~l~L~~~~~~~~-----~~ 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------R------------------------AEVAERVAELLDLVGLPGSERKYP-----GQ 134 (353)
T ss_pred HHHHHHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCCCchhhCCh-----hh
Confidence 99999976532110 0 011235788999999998877655 46
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++++||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-~~tvi~vTHd~~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRL-GVTTIMVTHDQEEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987654 45666789999999999999999999999
Q ss_pred EEEcChhhHH
Q 000562 387 VYQGPRVSVL 396 (1419)
Q Consensus 387 v~~G~~~~~~ 396 (1419)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (353)
T TIGR03265 214 EQVGTPQEIY 223 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=310.49 Aligned_cols=201 Identities=25% Similarity=0.374 Sum_probs=174.7
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHHHHH
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1419)
..++.|++||+++|+|||||||||||+.|+|+..|. +|+|.+||.+.+...| +|-+++++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 468899999999999999999999999999999776 9999999999887665 588999999999999999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHH
Q 000562 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1419)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1419)
++.. ++-+.+ . +....++.++..+||..+.+.+.+ .|||||
T Consensus 94 LGl~---P~LkL~------a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGq 134 (231)
T COG3840 94 LGLS---PGLKLN------A-------------------------EQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQ 134 (231)
T ss_pred ccCC---cccccC------H-------------------------HHHHHHHHHHHHhChhhHhhhCcc-----ccCchH
Confidence 8643 221111 0 113357889999999999887765 599999
Q ss_pred hHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcC
Q 000562 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1419)
Q Consensus 312 kkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1419)
||||++||+|+++.+|++||||+|+||+.-+.+....+.+++.+.+ .|+++++|+.+++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~-~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERK-MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhC-CEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 9999999999999999999999999999999999999999998754 555568888899999999999999999999999
Q ss_pred hhhHH
Q 000562 392 RVSVL 396 (1419)
Q Consensus 392 ~~~~~ 396 (1419)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 87764
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=362.91 Aligned_cols=203 Identities=27% Similarity=0.344 Sum_probs=178.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEE--EEEEECCccCCc-ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQ-ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~--G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~l 917 (1419)
+..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+ |+|.++|.+... ...+|.+|||+|+..++|++
T Consensus 17 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 17 ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK--AAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 4569999999999999999999999999999999999876 457 999999987643 22356799999999999999
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+||+.|....+ .....+.+++++++++.++|.+..+..+ +.|||||||||+|||||+.+|++|+|||||+
T Consensus 95 tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgGq~QRvaLARAL~~~P~llLLDEP~s 166 (362)
T TIGR03258 95 KVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166 (362)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9999999986543 2334455667899999999998888764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT--GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~--g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++..|+..
T Consensus 167 ~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~~g~~~ 224 (362)
T TIGR03258 167 ALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHGEPQ 224 (362)
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999876 799999999986 67888999999985 7999999853
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=354.34 Aligned_cols=206 Identities=29% Similarity=0.379 Sum_probs=178.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
..+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 36999999999999999999999999999999999999876 999999999875432 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|.++..+... .+...+++.+++.+||.+.+++.++
T Consensus 97 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 137 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------------------------------AAARALVPPLLEFAKLENKADAKVG----- 137 (306)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCchh-----
Confidence 9999997655432110 0012246778999999988888775
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ .+++|+.++|...++.++||+|++|++|+
T Consensus 138 ~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~till~sH~l~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 138 ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVIEEGR 215 (306)
T ss_pred hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999864 25677778999999999999999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
+++.|+++++..
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999988754
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=359.13 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=179.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
+.+|+|+|++|++||+++|+|||||||||||++|+|.++|. +|+|.++|.++....+ ++.++||+|++.+
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 46999999999999999999999999999999999999876 9999999999876543 4689999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++++||+||+.|+.+..+... .+...++.++++.+||++..++.++
T Consensus 83 ~~~~TV~eNi~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~vgL~~~~~~~p~ 128 (363)
T TIGR01186 83 FPHMTILQNTSLGPELLGWPE----------------------------------QERKEKALELLKLVGLEEYEHRYPD 128 (363)
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHhcCCchhhhCChh
Confidence 999999999998765432110 0012346788999999887776654
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
.|||||||||+|||||+.+|++++|||||+|||+.++.++.+.++++.+.. +.+|+.++|+..++..++|+|++
T Consensus 129 -----~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~-~~Tii~vTHd~~ea~~~~drI~v 202 (363)
T TIGR01186 129 -----ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL-QKTIVFITHDLDEAIRIGDRIVI 202 (363)
T ss_pred -----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEE
Confidence 599999999999999999999999999999999999999999999986543 45677799999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|+++..|+++++.
T Consensus 203 l~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 203 MKAGEIVQVGTPDEIL 218 (363)
T ss_pred EeCCEEEeeCCHHHHH
Confidence 9999999999998875
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=328.69 Aligned_cols=214 Identities=28% Similarity=0.389 Sum_probs=185.9
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEc
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCE 908 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~ 908 (1419)
++.++..+...+++|||+++++||++||+||||||||||+|+|+|..+ +.+|+|.++|.++... ..+.-++..+
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~--P~~G~v~~~G~~it~l~p~~iar~Gi~RTF 85 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK--PSSGTVIFRGRDITGLPPHRIARLGIARTF 85 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc--CCCceEEECCcccCCCCHHHHHhccceeec
Confidence 445556778899999999999999999999999999999999999877 5689999999986542 2345688899
Q ss_pred cCCCCCCCccHHHHHHHHhhhc--------CCCC-CcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHH
Q 000562 909 QNDIHSPGLTVLESLLFSAWLR--------LPSE-IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979 (1419)
Q Consensus 909 Q~d~~~~~lTv~E~l~f~a~lr--------~~~~-~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~i 979 (1419)
|...++++|||.||+..++..+ .+.. ...++..+++.++++.+||.+.+|...| +||+||||||.|
T Consensus 86 Q~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEI 160 (250)
T COG0411 86 QITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEI 160 (250)
T ss_pred ccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHH
Confidence 9999999999999998875533 1211 1234556788999999999999999875 699999999999
Q ss_pred HHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 980 A~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||||+++|++|+||||.+||.+.....+.+.|+++.++ |.||+++-||++. ++..||||+||+. |+++..|++.
T Consensus 161 ArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~-Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 161 ARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred HHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHH-HhhhccEEEeccC-CcCcccCCHH
Confidence 99999999999999999999999999999999999874 6999999999985 8899999999985 8999999874
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=338.81 Aligned_cols=200 Identities=31% Similarity=0.435 Sum_probs=170.1
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 12 SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 3569999999999999999999999999999999999866 468999999987643 2234579999999988889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+...... ......++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~L 161 (213)
T cd03259 90 AENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSAL 161 (213)
T ss_pred HHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654321 222334456788999999987766654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 162 DAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999764 899999999986 46788999999986 7887655
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-37 Score=336.53 Aligned_cols=207 Identities=27% Similarity=0.385 Sum_probs=181.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCC----CCCCCceEEEEccCC-CCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK----EFVPPRTSAYVSQQD-WQVA 222 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 222 (1419)
..+|+|+|+.+++|+.++|+||||||||||+++|+|.+.|. +|+|.++|.+.. ....++.+|||+|+| ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999886 899999999865 223468899999995 5677
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
.-||.|.++|+.+..+... .+...+++.+++.+||.+.+|..+
T Consensus 94 ~~tV~~evafg~~n~g~~~----------------------------------~e~~~rv~~~l~~vgl~~~~~r~p--- 136 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPR----------------------------------EEIEERVAEALELVGLEELLDRPP--- 136 (235)
T ss_pred cCcHHHHHhhchhhcCCCH----------------------------------HHHHHHHHHHHHHcCchhhccCCc---
Confidence 8899999999987665431 112446889999999999877544
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
..|||||||||+||.+|+.+|++++|||||||||+..+.++++.++++... ++.++|.++|+...+.+++|++++|+
T Consensus 137 --~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~-~~~tii~~tHd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 137 --FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEE-GGKTIIIVTHDLELVLEYADRVVVLD 213 (235)
T ss_pred --cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhc-CCCeEEEEeCcHHHHHhhCCEEEEEE
Confidence 569999999999999999999999999999999999999999999999864 45667779999999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1419)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999877643
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=361.07 Aligned_cols=218 Identities=27% Similarity=0.373 Sum_probs=184.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
.++|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.++|.++....+ +|.++||+|++.++|++||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999876 9999999998865543 4779999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+|||.|+.+.++... .+.+.+++++++.+||++..|..+ ..
T Consensus 104 ~eNi~~~l~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~p-----~~ 144 (375)
T PRK09452 104 FENVAFGLRMQKTPA----------------------------------AEITPRVMEALRMVQLEEFAQRKP-----HQ 144 (375)
T ss_pred HHHHHHHHhhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999999764322110 011234678899999998777655 46
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tiI~vTHd~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKL-GITFVFVTHDQEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987754 45667799999999999999999999999
Q ss_pred EEEcChhhHHHHHHhCCCCCCCCCChHHHH
Q 000562 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1419)
Q Consensus 387 v~~G~~~~~~~~F~~~G~~~p~~~~~adfl 416 (1419)
+..|+++++. ..|...-+++|+
T Consensus 224 ~~~g~~~~i~--------~~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIY--------EEPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHH--------hCcccHHHHHhc
Confidence 9999998873 345544455554
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=360.38 Aligned_cols=206 Identities=27% Similarity=0.396 Sum_probs=178.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCcc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+.+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+|||+|++.++|++|
T Consensus 13 ~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~t 90 (353)
T PRK10851 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMT 90 (353)
T ss_pred CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCc
Confidence 34579999999999999999999999999999999999876 468999999987643 223467999999999999999
Q ss_pred HHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 919 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 919 v~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|+||+.|....+.. .....++.+++++++++.++|.+..+..+ ..|||||||||+|||||+.+|++|+|||||+
T Consensus 91 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalArAL~~~P~llLLDEP~s 165 (353)
T PRK10851 91 VFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQRVALARALAVEPQILLLDEPFG 165 (353)
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999997654211 12234455667899999999988877654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |++++.|+.
T Consensus 166 ~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~~ 221 (353)
T PRK10851 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGTP 221 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999866 899999999986 67889999999985 799999985
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=357.95 Aligned_cols=204 Identities=24% Similarity=0.316 Sum_probs=178.5
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---cc----cceEEEEccCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TF----ARISGYCEQNDI 912 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~----~~~~gyv~Q~d~ 912 (1419)
+++.+|+|+|++|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++... .+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 45679999999999999999999999999999999999876 5689999999886531 22 568999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
++|++||+||+.|..... ....++..+++.++++.++|.+..+... ..|||||||||+|||||+.+|+||+|
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999986543 2334556677899999999988777654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||||++||+.++..+++.++++.++ |+|||++||+++ ++...+|++++|++ |+++..|+..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~-G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKA-GEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999999754 899999999976 57788999999985 7999999753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=337.50 Aligned_cols=200 Identities=28% Similarity=0.427 Sum_probs=172.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER--PTSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 579999999999999999999999999999999999865 468999999987642 3567999999998888899999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~ 1001 (1419)
++.+....+. .......+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988754432 222334566889999999987766653 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEec-CCEEEEeCCC
Q 000562 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 1054 (1419)
Q Consensus 1002 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gG~~~~~G~~ 1054 (1419)
.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ .|+++..++.
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999865 4899999999986 46778999999985 4899988775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=308.62 Aligned_cols=199 Identities=26% Similarity=0.380 Sum_probs=176.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
..+|+|||+.|++||++-|+||||||||||||+|.+...|+ .|+|.+||+++.... .+|.+|+|+||..++
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL 91 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLL 91 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeecccc
Confidence 46999999999999999999999999999999999988776 999999999987653 258999999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
++.||.||++|+.+..|... .+.+.++.++|+..||.+.++..
T Consensus 92 ~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~~l--- 134 (223)
T COG2884 92 PDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKARAL--- 134 (223)
T ss_pred ccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhhcC---
Confidence 99999999999887765321 12345688899999999987754
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
+..|||||||||+||||++.+|++|+-||||-.||+..+.+|++.+.++.+. +|||++.+|+..-+..+--+++.|
T Consensus 135 --P~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~--GtTVl~ATHd~~lv~~~~~rvl~l 210 (223)
T COG2884 135 --PSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL--GTTVLMATHDLELVNRMRHRVLAL 210 (223)
T ss_pred --ccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc--CcEEEEEeccHHHHHhccCcEEEE
Confidence 4469999999999999999999999999999999999999999999998753 788888999999998898999999
Q ss_pred cCCeEEEEc
Q 000562 382 SEGQIVYQG 390 (1419)
Q Consensus 382 ~~G~iv~~G 390 (1419)
++|+++...
T Consensus 211 ~~Grl~~d~ 219 (223)
T COG2884 211 EDGRLVRDE 219 (223)
T ss_pred eCCEEEecc
Confidence 999998754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=353.95 Aligned_cols=203 Identities=27% Similarity=0.369 Sum_probs=174.7
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 15 GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS--PDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 34579999999999999999999999999999999999865 458999999987532 23456799999999988999
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+|++.+.+..+. ....+..+.++++++.+++.+..++.+ +.||||||||++||++|+.+|++|+|||||+
T Consensus 93 tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 93 TVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99999987554331 222333456788999999988777664 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 219 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGRP 219 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999878999999999986 57788999999985 799999985
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=360.12 Aligned_cols=202 Identities=24% Similarity=0.345 Sum_probs=177.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
...+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+|||+|++.++|++||
T Consensus 26 ~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 26 GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET--PDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 3568999999999999999999999999999999999876 468999999987643 2235779999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|+...+. .+..+.++.++++++.++|.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 104 ~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~L 175 (375)
T PRK09452 104 FENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQRVAIARAVVNKPKVLLLDESLSAL 175 (375)
T ss_pred HHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcC
Confidence 999999865432 233445567899999999998887764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|..++..+.+.|+++.++ |.|+|++||++. ++...+|++++|++ |+++..|+.
T Consensus 176 D~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~ 229 (375)
T PRK09452 176 DYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGTP 229 (375)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999865 899999999986 68889999999985 899999985
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.66 Aligned_cols=199 Identities=24% Similarity=0.443 Sum_probs=170.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..++.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 3569999999999999999999999999999999999865 468999999987643 3456799999999888899999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD 160 (210)
T cd03269 89 DQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD 160 (210)
T ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 99988655432 222334456789999999987766543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 161 ~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 161 PVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 99999999999999877899999999976 46678999999985 7887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-37 Score=325.98 Aligned_cols=199 Identities=27% Similarity=0.375 Sum_probs=168.7
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCC--CCCC
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDI--HSPG 916 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~--~~~~ 916 (1419)
.+|+|||+++.+||++||+|+||||||||.++|+|... +.+|+|.++|.+.... .+.+.+.+|+||+. +.|.
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~--p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~ 98 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK--PSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPR 98 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC--CCCceEEECCcccCccccchhhccceeEEecCCccccCcc
Confidence 59999999999999999999999999999999999877 4689999999875432 46788999999975 5689
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-cCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.||++.|.-.... ...++.+ +++.++++.+||.+- .+.. +.+||||||||++|||||+.+|++|++|||
T Consensus 99 ~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~eLSGGQ~QRiaIARAL~~~PklLIlDEp 168 (252)
T COG1124 99 RTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHELSGGQRQRIAIARALIPEPKLLILDEP 168 (252)
T ss_pred hhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chhcChhHHHHHHHHHHhccCCCEEEecCc
Confidence 9999988654432 1222222 338999999999653 3332 467999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||.||+..+++|++.+.++.++ +.|.|+++||.+. +...|||++||++ |+++..+|.+
T Consensus 169 tSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~ivE~~~~~ 227 (252)
T COG1124 169 TSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQIVEIGPTE 227 (252)
T ss_pred hhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeEEEeechh
Confidence 9999999999999999999754 7899999999874 7778999999986 7999999964
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=336.56 Aligned_cols=201 Identities=26% Similarity=0.376 Sum_probs=178.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC----cccccceEEEEccCCCC-CCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----QETFARISGYCEQNDIH-SPG 916 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~d~~-~~~ 916 (1419)
..+|+|+|+++++||.++|+|+||||||||+++|+|... +.+|.|.++|.+.. ...+++.+|||+|++.. +..
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~--p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~ 94 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK--PTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFG 94 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc--CCCCEEEECCeeccchhhHHHhhcceEEEEECccccccc
Confidence 579999999999999999999999999999999999877 45799999999855 34678899999999755 456
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
-||.|.+.|+..-. ..+.++.+++++++++.+++.++++.. +..|||||||||+||.+|+.+|++|+|||||
T Consensus 95 ~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSGGqkqRvaIA~vLa~~P~iliLDEPt 166 (235)
T COG1122 95 PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRP-----PFNLSGGQKQRVAIAGVLAMGPEILLLDEPT 166 (235)
T ss_pred CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCCcceeeHHhhHHHHcCCCEEEEcCCC
Confidence 79999999986433 345556788999999999999998765 4589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+.+...+++.++++.++ |.|||+++||.+ .+.+.+|++++|++ |+++++|++
T Consensus 167 a~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~~g~p 223 (235)
T COG1122 167 AGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILADGDP 223 (235)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEeecCCH
Confidence 999999999999999999877 689999999986 57788999999996 799999985
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=308.77 Aligned_cols=196 Identities=28% Similarity=0.366 Sum_probs=172.1
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccHHHHHHH
Q 000562 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1419)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 925 (1419)
..+.+|.+||++||+||||||||||||+|+|... +.+|+|.|||.+... ....|-++.++|+..+|.++||.+|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~--P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET--PASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccC--CCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 4567899999999999999999999999999877 568999999998654 3456778999999999999999999987
Q ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 000562 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1419)
Q Consensus 926 ~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~ 1005 (1419)
+.. |.-.-..+.++.++.++..+||.++.+.+. ..||||||||+++||+|+++-+|++||||.|.|||.-+.
T Consensus 95 Gl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCC---cccccCHHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 642 211112445677899999999999988874 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1006 IVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1006 ~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
++...+.++++ ++.|++++||+|+ +....+|+++++++ |++.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 99999999975 4899999999997 78899999999986 899999985
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=337.44 Aligned_cols=202 Identities=28% Similarity=0.372 Sum_probs=173.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK--PTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 4579999999999999999999999999999999999865 468999999986532 234567999999998889999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
|+|++.+....+. ...++.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 90 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~ 161 (220)
T cd03265 90 GWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIG 161 (220)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999998754432 222334456889999999987776654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 162 LDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 9999999999999999876 899999999986 57778999999985 799888864
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=337.55 Aligned_cols=194 Identities=25% Similarity=0.326 Sum_probs=166.5
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---c---cccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E---TFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... . .+++.++|++|++.+++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 93 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK--PTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLS 93 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEehhhcChhHHHHHHHhceEEecCccccc
Confidence 469999999999999999999999999999999999866 468999999987532 1 24567999999999889
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+||+|++.+....+. ....+.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 94 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP 165 (216)
T TIGR00960 94 DRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLSGGEQQRVAIARAIVHKPPLLLADEP 165 (216)
T ss_pred cccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998754432 222334556889999999987776654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCE
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~ 1047 (1419)
|+|||+.++..+.+.|++++++|+|||+++|+++ .+...+|++++|.+ |+
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 166 TGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999877999999999986 46678999999986 54
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=340.10 Aligned_cols=205 Identities=29% Similarity=0.391 Sum_probs=173.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c-ccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 12 GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 3569999999999999999999999999999999999865 4689999999876431 1 23468999999999999
Q ss_pred ccHHHHHHHHhhhcCCCC-------CcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 917 LTVLESLLFSAWLRLPSE-------IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~-------~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
+||+|++.+....+.... ....+..+.++++++.+++.+..+..+ +.||||||||++||++|+.+|++
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~l 164 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----GELSYGQQRRLEIARALATDPKL 164 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----hhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999988754332110 012334456889999999987766543 57999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 9999999999999999999999999878999999999986 56678999999985 799988874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=358.69 Aligned_cols=203 Identities=25% Similarity=0.359 Sum_probs=178.1
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
+..+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...+|.+|||+|++.++|++||
T Consensus 31 ~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 31 GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ--PTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 3569999999999999999999999999999999999876 568999999987643 2346789999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|+...+. ....+.+++++++++.++|.+..+... .+|||||||||+|||+|+.+|++|+|||||+||
T Consensus 109 ~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~L 180 (377)
T PRK11607 109 EQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180 (377)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999999865432 234455667899999999998877654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1000 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|..++..+.+.|+++.+ .|.|+|++|||++ ++...+|++++|++ |+++..|++.
T Consensus 181 D~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~-G~i~~~g~~~ 235 (377)
T PRK11607 181 DKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNR-GKFVQIGEPE 235 (377)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeC-CEEEEEcCHH
Confidence 99999999999999865 4899999999986 67889999999985 7999999853
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=352.46 Aligned_cols=229 Identities=25% Similarity=0.381 Sum_probs=187.1
Q ss_pred cCCCCCCcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcceeeeecceEeEeCCeEEEEEcCCCC
Q 000562 93 VDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSS 172 (1419)
Q Consensus 93 ~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 172 (1419)
..+..|.=.|+|+|++.+- . ++++||+++||+|++||.+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y-------------------------------~--~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSY-------------------------------G--PKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEe-------------------------------C--CCCceecceeEEecCCCEEEEECCCCC
Confidence 4566677789999988662 1 223599999999999999999999999
Q ss_pred cHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHH
Q 000562 173 GKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249 (1419)
Q Consensus 173 GKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 249 (1419)
||||+|++|.++++ + +|+|.+||.++++... |+.+|||||+..+|. .||.+||.++.. ...++.+.++
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~----sas~eeV~e~ 460 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP----SASDEEVVEA 460 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC----CcCHHHHHHH
Confidence 99999999999987 4 8999999999987654 578999999987665 599999998743 2334555555
Q ss_pred HHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeE
Q 000562 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1419)
Q Consensus 250 ~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~ill 329 (1419)
|++... .|. ...|++.++|.||+++. -|||||||||++|||++.+|+|++
T Consensus 461 ~k~a~~--------------------------hd~---i~~l~~GY~T~VGerG~-~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 461 CKRAGL--------------------------HDV---ISRLPDGYQTLVGERGL-MLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred HHHcCc--------------------------HHH---HHhccccchhhHhhccc-ccccchHHHHHHHHHHhcCCCeEE
Confidence 554221 111 34588999999998765 599999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHHH
Q 000562 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 330 lDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~ 397 (1419)
+|||||+||+.|..++++.+.... ++.|+|.+.|... +...||+|++|++|++...|+.+|++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~---~~rTvI~IvH~l~-ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM---SGRTVIMIVHRLD-LLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc---CCCeEEEEEecch-hHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999732 3444555666654 557899999999999999999999975
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=334.58 Aligned_cols=200 Identities=27% Similarity=0.391 Sum_probs=170.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+
T Consensus 12 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 3569999999999999999999999999999999999865 4689999999875431 224579999999988889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+....+. ...++.++.++++++.+++.+..+..+ +.||||||||++||++|+.+|++++|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~L 161 (213)
T cd03301 90 YDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNL 161 (213)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654331 223344556788999999987776654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|+.++..+++.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 162 DAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 999999999999999864 899999999976 56778999999985 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=355.14 Aligned_cols=210 Identities=27% Similarity=0.382 Sum_probs=178.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
+++|+|+|+++++||+++|+|||||||||||++|+|.++++ +|+|.++|+++....+ ++.++||+|++.+++++||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 35999999999999999999999999999999999998876 9999999998865443 3679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.|+.+......... . .+...+++++++.+||++..|+.+ ..
T Consensus 92 ~eni~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~-----~~ 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPN------A------------------------AAIKAKVTQLLEMVQLAHLADRYP-----AQ 136 (353)
T ss_pred HHHHHhhhhhcccccCCC------H------------------------HHHHHHHHHHHHHcCCchhhhCCh-----hh
Confidence 999998754311000000 0 011235678999999988777655 46
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~-g~tii~vTHd~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL-KFTSVFVTHDQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45677799999999999999999999999
Q ss_pred EEEcChhhHH
Q 000562 387 VYQGPRVSVL 396 (1419)
Q Consensus 387 v~~G~~~~~~ 396 (1419)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=351.02 Aligned_cols=202 Identities=26% Similarity=0.381 Sum_probs=176.5
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~l 917 (1419)
+++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.+... ...++.+||++|++.+++.+
T Consensus 13 ~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 13 GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 34679999999999999999999999999999999999866 568999999987643 23456799999999999999
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||.|++.+.+.++. ...++..+.++++++.+||.+..+..+ +.||||||||++||++|+.+|++|+|||||+
T Consensus 91 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 91 YVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999998776542 222334456889999999998887764 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+++.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 163 gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred cCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999864 799999999986 57788999999985 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=358.96 Aligned_cols=202 Identities=27% Similarity=0.397 Sum_probs=176.2
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|+..+++.+||
T Consensus 15 ~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 15 DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 4579999999999999999999999999999999999876 468999999987643 1234679999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|....+. ....+.+++++++++.++|.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 93 ~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~L 164 (369)
T PRK11000 93 AENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 164 (369)
T ss_pred HHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 999998765432 233445567899999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|++ |+++..|+.
T Consensus 165 D~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~ 218 (369)
T PRK11000 165 DAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (369)
T ss_pred CHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999765 899999999986 57788999999985 799999985
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=338.75 Aligned_cols=203 Identities=24% Similarity=0.346 Sum_probs=173.3
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c-ccceEEEEccCCCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSP 915 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~ 915 (1419)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++
T Consensus 11 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~ 88 (232)
T cd03218 11 GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK--PDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFR 88 (232)
T ss_pred CCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccCCHhHHHhccEEEecCCccccc
Confidence 34579999999999999999999999999999999999866 4689999999875321 1 2346899999999999
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 89 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 160 (232)
T cd03218 89 KLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEP 160 (232)
T ss_pred cCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999988643332 222334456788999999987766653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 161 t~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 217 (232)
T cd03218 161 FAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYE-GKVLAEGTP 217 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEEeCH
Confidence 9999999999999999999877999999999986 57888999999985 799988875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=337.94 Aligned_cols=203 Identities=26% Similarity=0.318 Sum_probs=170.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCC-----CCceEEEEEEECCccCCc-----ccccceEEEEccC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK-----TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQN 910 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~-----~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~ 910 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|.. + +.+|+|.++|.+... ..+++.++|++|+
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 12 DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 456999999999999999999999999999999999986 4 568999999987532 2345679999999
Q ss_pred CCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 911 d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
+.++ .+||+||+.+....+.. ....+.++.++++++.+++.+..+.... +..||||||||++||++|+.+|++|
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 8877 79999999887544321 1112234567889999999876554320 3579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||||+|||+.++..+.+.|++++++ +|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 999999999999999999999999876 99999999986 46678999999985 799999875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=339.10 Aligned_cols=205 Identities=28% Similarity=0.385 Sum_probs=172.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+||
T Consensus 14 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 14 DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 3569999999999999999999999999999999999865 4689999999875432 224569999999988889999
Q ss_pred HHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 920 LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 920 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
+|++.+....+.. ......+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP~~~ 166 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFGA 166 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999886543211 00122233456788999999987766653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 221 (239)
T cd03296 167 LDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGTP 221 (239)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCH
Confidence 9999999999999999865 899999999986 46778999999985 799998875
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=335.73 Aligned_cols=198 Identities=28% Similarity=0.428 Sum_probs=170.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCccHH
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE--PDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 69999999999999999999999999999999999866 468999999987643 23456799999999888999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 99987654432 223344567889999999987776653 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999877999999999986 56778999999986 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=356.55 Aligned_cols=206 Identities=22% Similarity=0.312 Sum_probs=178.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
..+|+|+|+.+++||+++|+|||||||||||++|+|..+++ +|+|.++|+++....+ +|.++||+|++.+|+++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999876 9999999998865443 4789999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
.||+.|+.+..+... .+...+++++++.+||.+..|..+ .+
T Consensus 109 ~eNi~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~l~L~~~~~~~~-----~~ 149 (377)
T PRK11607 109 EQNIAFGLKQDKLPK----------------------------------AEIASRVNEMLGLVHMQEFAKRKP-----HQ 149 (377)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence 999999765322100 011234678899999987766554 46
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++|+||||+++||..++.++.+.|+++.+.. +.+++.++|+..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~-g~tii~vTHd~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERV-GVTCVMVTHDQEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEcCCHHHHHHhCCEEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999887654 46667789999999999999999999999
Q ss_pred EEEcChhhHH
Q 000562 387 VYQGPRVSVL 396 (1419)
Q Consensus 387 v~~G~~~~~~ 396 (1419)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=320.81 Aligned_cols=210 Identities=27% Similarity=0.375 Sum_probs=176.4
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEc
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCE 908 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~ 908 (1419)
++....++..++|++||+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.++.. +..++-++|||
T Consensus 7 ~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~--~~~G~I~~~G~dit~~p~~~r~r~Gi~~VP 84 (237)
T COG0410 7 ENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR--PRSGRIIFDGEDITGLPPHERARLGIAYVP 84 (237)
T ss_pred EeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeeEEECCeecCCCCHHHHHhCCeEeCc
Confidence 344445677899999999999999999999999999999999999876 458999999998754 33456799999
Q ss_pred cCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcC-CccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000562 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1419)
Q Consensus 909 Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p 987 (1419)
|....||.|||+|||..++..+... +......+++.+.+- |.+.++...| .|||||||-|+|||||+++|
T Consensus 85 egR~iF~~LTVeENL~~g~~~~~~~----~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~P 155 (237)
T COG0410 85 EGRRIFPRLTVEENLLLGAYARRDK----EAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRP 155 (237)
T ss_pred ccccchhhCcHHHHHhhhhhccccc----ccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCC
Confidence 9999999999999999887654321 111222677777764 5556666544 69999999999999999999
Q ss_pred CcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
++|+|||||.||-|.-..+|.++|+++.++ |.||+.+-+... ...+.+||.++|.+ |++++.|+..
T Consensus 156 klLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 156 KLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred CEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 999999999999999999999999999866 779999998866 47789999999985 8999999864
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=336.96 Aligned_cols=206 Identities=25% Similarity=0.354 Sum_probs=173.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 36999999999999999999999999999999999998775 999999998876532 245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.++........ . .+....++.+++.+||++..++.++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 135 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLS---------E------------------------EEIREIVLEKLEAVGLRGAEDLYPA- 135 (235)
T ss_pred CCCcHHHHHHHHHhhccCCC---------H------------------------HHHHHHHHHHHHHcCCchhhcCChh-
Confidence 99999999988643210000 0 0012245678899999877666554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|
T Consensus 136 ----~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~vsH~~~~~~~~~d~v~~l 210 (235)
T cd03261 136 ----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL-GLTSIMVTHDLDTAFAIADRIAVL 210 (235)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEecCHHHHHHhcCEEEEE
Confidence 599999999999999999999999999999999999999999999987532 456677889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 000562 382 SEGQIVYQGPRVSV 395 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1419)
++|++++.|+++++
T Consensus 211 ~~G~i~~~g~~~~~ 224 (235)
T cd03261 211 YDGKIVAEGTPEEL 224 (235)
T ss_pred ECCeEEEecCHHHH
Confidence 99999999988765
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=354.84 Aligned_cols=201 Identities=26% Similarity=0.334 Sum_probs=174.4
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~ 95 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER--PTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS 95 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCC
Confidence 579999999999999999999999999999999999876 4689999999876431 23567999999999999
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+||+||+.+....+. ....+.++.++++++.++|.+..+..+ +.||||||||++|||+|+.+|++|+||||
T Consensus 96 ~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~iLlLDEP 167 (343)
T PRK11153 96 SRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYP-----AQLSGGQKQRVAIARALASNPKVLLCDEA 167 (343)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999998765432 233344567889999999988777653 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 168 ts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~~~g~~ 225 (343)
T PRK11153 168 TSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLVEQGTV 225 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 9999999999999999999765 899999999986 56778999999985 799999875
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=351.70 Aligned_cols=206 Identities=24% Similarity=0.369 Sum_probs=176.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 46999999999999999999999999999999999999876 9999999998865432 35799999999989
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.+.....+... . +....++.+++.+||++..++.++
T Consensus 95 ~~~tv~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~~- 139 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTPK----------A------------------------EIKARVTELLELVGLSDKADRYPA- 139 (343)
T ss_pred CCCcHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCChh-
Confidence 99999999998654322100 0 012246778999999887776554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.++||+|++|
T Consensus 140 ----~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiilvtH~~~~i~~~~d~v~~l 214 (343)
T PRK11153 140 ----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINREL-GLTIVLITHEMDVVKRICDRVAVI 214 (343)
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 699999999999999999999999999999999999999999999987543 466777899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999988774
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=359.19 Aligned_cols=207 Identities=28% Similarity=0.379 Sum_probs=176.9
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~ 916 (1419)
+++.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ..+++.+||++|++.+++.
T Consensus 14 ~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 14 GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 45679999999999999999999999999999999999876 468999999987643 3456789999999998899
Q ss_pred ccHHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+||+|++.++....... .......++.++++++.+++.+..++.+ +.||||||||+.|||+|+++|+||+||||
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgGerQRv~IArAL~~~P~iLLLDEP 166 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGGERQRVLLARALAQATPVLLLDEP 166 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 99999998864221100 0011234567899999999998887754 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 167 tsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G~~~ 224 (402)
T PRK09536 167 TASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAGPPA 224 (402)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999877999999999986 57788999999985 7999999864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=333.08 Aligned_cols=192 Identities=28% Similarity=0.387 Sum_probs=163.5
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCC-CCCCccHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI-HSPGLTVL 920 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~-~~~~lTv~ 920 (1419)
+.+|+|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+......++.+||++|++. .+..+|++
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 569999999999999999999999999999999999876 468999999987644445567999999974 34467999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
||+.+....+. ...+.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++++|||||+|||
T Consensus 91 e~l~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKELD-------AGNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhcC-------ccHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 99987543221 11245788999999988777654 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~ 1049 (1419)
+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999877999999999986 46678999999986 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=332.85 Aligned_cols=196 Identities=28% Similarity=0.416 Sum_probs=168.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 12 ~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 4579999999999999999999999999999999999866 468999999987543 2345679999999988889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+....+. . .++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+||
T Consensus 90 ~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 90 RENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred HHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 999988654321 1 1345788999999987776653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 999999999999999877999999999976 46678999999985 7888765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=349.95 Aligned_cols=206 Identities=27% Similarity=0.387 Sum_probs=177.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
+++|+|+|+.+++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999998875421 2457999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.+.++..+... .+....++++++.+||++..++.++
T Consensus 83 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 123 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------------------------------DEAEERAEELLELFELGEAADRPVG----- 123 (302)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhCCchh-----
Confidence 9999998655432110 0012246788999999988877665
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.++||+|++|++|+
T Consensus 124 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~tvi~~sH~~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 124 TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE--GVTILLTTHYMEEADKLCDRIAIIDHGR 201 (302)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998753 5667778999999999999999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
+++.|+.+++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999988754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=311.60 Aligned_cols=207 Identities=26% Similarity=0.401 Sum_probs=175.7
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~ 916 (1419)
.++.+|++||++++|||++||+|||||||||||++|+|... +.+|++.+||.+.+. ...++.-+..||+..+...
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~--p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFp 89 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS--PDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC--CCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccc
Confidence 35789999999999999999999999999999999999876 458999999998654 3456677999999888778
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhh------CCCcc
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIV 990 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~------~p~il 990 (1419)
.||+|-+.++..-... .....+..+.++++|...++.+++.... ..|||||||||.+||.|+. ++++|
T Consensus 90 Ftv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEqQRVqlARvLaQl~~~v~~~r~L 163 (259)
T COG4559 90 FTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWL 163 (259)
T ss_pred eEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHHHHHHHHHHHHHccCCCCCCceE
Confidence 8999999987532211 1122244556889999999999887654 4799999999999999976 34689
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
|||||||.||...+..++++.|+++++|..|+++.||.+. ...++|+|++|++ |+++..|++.+
T Consensus 164 ~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~-Grv~a~g~p~~ 227 (259)
T COG4559 164 FLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQ-GRVIASGSPQD 227 (259)
T ss_pred EecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeC-CeEeecCCHHH
Confidence 9999999999999999999999999999999999999985 6688999999985 89999998753
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=355.17 Aligned_cols=206 Identities=25% Similarity=0.379 Sum_probs=177.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 35999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.|+.+..+... . +...+++++++.+||++..|+.++ .
T Consensus 93 ~eni~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~lgL~~~~~~~~~-----~ 133 (369)
T PRK11000 93 AENMSFGLKLAGAKK----------E------------------------EINQRVNQVAEVLQLAHLLDRKPK-----A 133 (369)
T ss_pred HHHHHhHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhcCChh-----h
Confidence 999998754322100 0 012246788999999887776654 6
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tvI~vTHd~~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999987643 45667789999999999999999999999
Q ss_pred EEEcChhhHH
Q 000562 387 VYQGPRVSVL 396 (1419)
Q Consensus 387 v~~G~~~~~~ 396 (1419)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=364.23 Aligned_cols=214 Identities=28% Similarity=0.441 Sum_probs=176.0
Q ss_pred ccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECC
Q 000562 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1419)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 892 (1419)
-+-.++++|++|..+. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|... +..|+|.+||
T Consensus 468 ~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~dg 534 (709)
T COG2274 468 LQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILLDG 534 (709)
T ss_pred cCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC
Confidence 3457888999887742 23479999999999999999999999999999999999877 5699999999
Q ss_pred ccCC---cccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccCCccc
Q 000562 893 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-------TSLSGALIG 962 (1419)
Q Consensus 893 ~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~~g 962 (1419)
++.. ...+|+.+|||+|++.++. -|++||+.++. | +.+.+ .+.++++..|. ..-.|+.+|
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~----p-~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~v~ 604 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN----P-EATDE----EIIEAAQLAGAHEFIENLPMGYDTPVG 604 (709)
T ss_pred EeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC----C-CCCHH----HHHHHHHHhCcHHHHHhcccccccccc
Confidence 9864 3568899999999988875 59999998752 2 22222 22333333333 223456666
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEE
Q 000562 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1419)
Q Consensus 963 ~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1042 (1419)
..| .+||||||||++|||+|+++|+||+||||||+||+.+.+.|++.|+++. +|+|+|+++|+++ .++.+|+++||
T Consensus 605 E~G-~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIiVl 680 (709)
T COG2274 605 EGG-ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRIIVL 680 (709)
T ss_pred cCC-CCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEEEc
Confidence 544 5799999999999999999999999999999999999999999999975 5899999999976 67899999999
Q ss_pred ecCCEEEEeCCC
Q 000562 1043 KRGGELIYAGPL 1054 (1419)
Q Consensus 1043 ~~gG~~~~~G~~ 1054 (1419)
++ |+++..|+.
T Consensus 681 ~~-Gkiv~~gs~ 691 (709)
T COG2274 681 DQ-GKIVEQGSH 691 (709)
T ss_pred cC-CceeccCCH
Confidence 85 899999995
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=316.02 Aligned_cols=205 Identities=26% Similarity=0.399 Sum_probs=172.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC----ceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~~ 223 (1419)
.++|+|||+.+++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+. +-++||||....|+.
T Consensus 16 ~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~ 92 (237)
T COG0410 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPR 92 (237)
T ss_pred eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchhh
Confidence 57999999999999999999999999999999999998775 99999999999887653 568999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhC-CcccccccccCc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1419)
|||+|||..++....... . ... ..|.+.+.+= |....+..-|
T Consensus 93 LTVeENL~~g~~~~~~~~-~----------------~~~------------------~~e~v~~lFP~Lker~~~~aG-- 135 (237)
T COG0410 93 LTVEENLLLGAYARRDKE-A----------------QER------------------DLEEVYELFPRLKERRNQRAG-- 135 (237)
T ss_pred CcHHHHHhhhhhcccccc-c----------------ccc------------------cHHHHHHHChhHHHHhcCccc--
Confidence 999999998754321100 0 000 0233333332 3444555555
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
+|||||+|-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+. ++.+|+.+.|+...+.+++|+.++|.
T Consensus 136 ---~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~-~g~tIlLVEQn~~~Al~iaDr~yvle 211 (237)
T COG0410 136 ---TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE-GGMTILLVEQNARFALEIADRGYVLE 211 (237)
T ss_pred ---CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHc-CCcEEEEEeccHHHHHHhhCEEEEEe
Confidence 59999999999999999999999999999999999999999999999865 35788889999999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|+|++.|+.+++.
T Consensus 212 ~Griv~~G~~~eL~ 225 (237)
T COG0410 212 NGRIVLSGTAAELL 225 (237)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999998875
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=334.37 Aligned_cols=193 Identities=31% Similarity=0.444 Sum_probs=164.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-------cccceEEEEccCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIHS 914 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gyv~Q~d~~~ 914 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 579999999999999999999999999999999999876 4689999999875421 1245799999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
+.+||+|++.+....+. ......++.++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998765432 122334456889999999987766553 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCE
Q 000562 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~ 1047 (1419)
||+|||+.++..+.+.|+++++ .|+|||+++|+++. + +.+|++++|++ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-A-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-H-hhhcEEEEeeC-Cc
Confidence 9999999999999999999987 58999999999863 4 48999999986 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=322.52 Aligned_cols=221 Identities=23% Similarity=0.354 Sum_probs=187.8
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC----ceEEEEccCCCCC
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQV 221 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 221 (1419)
....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ .-++..+|...+|
T Consensus 15 GGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF 91 (250)
T COG0411 15 GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRLF 91 (250)
T ss_pred CCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeeccccccc
Confidence 3467999999999999999999999999999999999999887 99999999999887764 4578899999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
++|||.||+..++..+.. +...-...+- .-+..+..++...+|+.+||.+.+|+..|+
T Consensus 92 ~~lTVlENv~va~~~~~~---~~~~l~~~~~-------------------~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~ 149 (250)
T COG0411 92 PGLTVLENVAVGAHARLG---LSGLLGRPRA-------------------RKEEREARERARELLEFVGLGELADRPAGN 149 (250)
T ss_pred CCCcHHHHHHHHhhhhhh---hhhhhccccc-------------------hhhHHHHHHHHHHHHHHcCCchhhcchhhc
Confidence 999999999988664421 0000000000 000112345678899999999999999885
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+. ++.+|+.+-|+..-++++||||++|
T Consensus 150 -----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~-~g~tillIEHdM~~Vm~l~dri~Vl 223 (250)
T COG0411 150 -----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDR-GGVTILLIEHDMKLVMGLADRIVVL 223 (250)
T ss_pred -----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhc-CCcEEEEEEeccHHHhhhccEEEec
Confidence 9999999999999999999999999999999999999999999999863 4678888999999999999999999
Q ss_pred cCCeEEEEcChhhHHH
Q 000562 382 SEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~~ 397 (1419)
+.|+++.+|+++++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999999853
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=339.03 Aligned_cols=204 Identities=28% Similarity=0.377 Sum_probs=170.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 569999999999999999999999999999999999865 458999999987542 224567999999998889
Q ss_pred CccHHHHHHHHhhhcC-----CCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 916 GLTVLESLLFSAWLRL-----PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
.+||+|++.+...... ..........+.++++++.+++.+..+.. +..||||||||++||++|+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999987532110 00111123345678899999998766654 3579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999986 46678999999985 799998875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-36 Score=335.98 Aligned_cols=200 Identities=27% Similarity=0.348 Sum_probs=172.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCCCCCCC
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~~~ 916 (1419)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 79999999999999999999999999999999999876 4689999999875431 235679999999999999
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
+|++|++.+....+. .......+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYP-----AQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654332 223334556789999999987766643 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEK-GEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999765 899999999976 46678999999985 799998874
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=341.70 Aligned_cols=209 Identities=23% Similarity=0.268 Sum_probs=176.6
Q ss_pred cccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c----ccceEEE
Q 000562 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGY 906 (1419)
Q Consensus 834 ~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gy 906 (1419)
+..+.++.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|
T Consensus 29 ~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 29 EILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccChhhhhhhhcCcEEE
Confidence 34445567789999999999999999999999999999999999876 4589999999875421 1 2357999
Q ss_pred EccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000562 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1419)
Q Consensus 907 v~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~ 986 (1419)
++|++.+++.+||+|++.+....+. .......+.++++++.++|.+..+..+ ..||||||||++||++|+.+
T Consensus 107 v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 107 VFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999998889999999988754331 122334456788999999987777654 47999999999999999999
Q ss_pred CCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 245 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKD-GRLVQVGTP 245 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999999754 899999999976 46788999999985 799998875
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=348.58 Aligned_cols=206 Identities=28% Similarity=0.372 Sum_probs=177.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
+.+|+|||++|++|++++|+||||||||||+++|+|.+.|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 35999999999999999999999999999999999999876 999999999875432 2467999999999899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|.....+... .+....++.+++.+||++..++.++
T Consensus 131 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~ll~~~~L~~~~~~~~~----- 171 (340)
T PRK13536 131 VRENLLVFGRYFGMST----------------------------------REIEAVIPSLLEFARLESKADARVS----- 171 (340)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhCCChh-----
Confidence 9999987544322100 0011235678889999988887775
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+|||||||||+||+||+++|++++|||||+|||+.++.++.+.|++++. .+++|+.++|+..++.++||+|++|++|+
T Consensus 172 ~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~--~g~tilisSH~l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 172 DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA--RGKTILLTTHFMEEAERLCDRLCVLEAGR 249 (340)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999999865 25667778999999999999999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
++++|+.+++..
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999998764
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-36 Score=332.59 Aligned_cols=200 Identities=30% Similarity=0.448 Sum_probs=171.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCccH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 569999999999999999999999999999999999866 468999999987542 2345679999999988889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+....+. ....+..+.++++++.++|.+..++.+ ..||+|||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654432 222333456789999999987766653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999875 699999999986 46678999999985 799988875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=336.14 Aligned_cols=203 Identities=25% Similarity=0.378 Sum_probs=173.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~ 915 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 13 ~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 13 PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 3569999999999999999999999999999999999865 568999999987542 234567999999998888
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+||+|++.+...... .....+..+.+.++++.+++.+..+..+ +.||||||||++||++|+.+|++++||||
T Consensus 91 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP 163 (240)
T PRK09493 91 HLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQQQRVAIARALAVKPKLMLFDEP 163 (240)
T ss_pred CCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999999987642111 1223344556789999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 164 ~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 164 TSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 9999999999999999999877999999999986 46678999999985 799999875
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=331.39 Aligned_cols=205 Identities=38% Similarity=0.712 Sum_probs=172.3
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC-CceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +++.+|+|.++|.+.....+++.++|++|++.+++.+||+
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 579999999999999999999999999999999999764 1235899999998765445667899999999999999999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHH-HHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEE-VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~-vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
||+.|.+....+...........+++ .++.+++.+..++. ++.||||||||++||++|+.+|++++|||||+||
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~illlDEP~~gL 174 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGERRRVSIAVQLLWDPKVLILDEPTSGL 174 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCC
Confidence 99998765443222122222334455 88888888776654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|+.++..+.+.++++.++|.|||+++|++..++.+.+|++++|++ |++++.|
T Consensus 175 D~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 175 DSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999877999999999985468889999999985 7888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=339.40 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=177.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-----CCceEEEEccCCC-CC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 221 (1419)
+++|+|||++|++||+++|+||||||||||+++|+|.++|. +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 36999999999999999999999999999999999999876 999999999886532 2467999999863 34
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc--ccccccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLV 299 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~v 299 (1419)
...||+||+.|+....+.. .++....++++++.+||+ +..|+.
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------------------------------~~~~~~~~~~~l~~~gL~~~~~~~~~- 141 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------------------------------EEEIENRVKRAMNIVGLDYEDYKDKS- 141 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------------------------------HHHHHHHHHHHHHHcCCCchhhccCC-
Confidence 5689999998864322110 001123467889999997 445544
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
++.||||||||++||+||+.+|++|+|||||+|||+.++.++.+.|+++++. .+++|+.++|+..++..+||+|+
T Consensus 142 ----~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvi~vtHd~~~~~~~~drv~ 216 (287)
T PRK13637 142 ----PFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE-YNMTIILVSHSMEDVAKLADRII 216 (287)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEE
Confidence 4569999999999999999999999999999999999999999999998763 35677778999999999999999
Q ss_pred EEcCCeEEEEcChhhHHH---HHHhCCCCCCC
Q 000562 380 LLSEGQIVYQGPRVSVLD---FFASMGFSCPK 408 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~~---~F~~~G~~~p~ 408 (1419)
+|++|+++++|+++++.+ .....|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999988743 23344555443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=332.36 Aligned_cols=200 Identities=28% Similarity=0.400 Sum_probs=169.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCccc------c-cceEEEEccCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET------F-ARISGYCEQNDIHS 914 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~------~-~~~~gyv~Q~d~~~ 914 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.... . ++.++|++|++.++
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~ 99 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLL 99 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccC
Confidence 469999999999999999999999999999999999865 46899999998764311 2 25699999999888
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
+.+|++|++.+....+. ...++.+++++++++.+++.+..+..+ ..||||||||++||++|+.+|+||+|||
T Consensus 100 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDE 171 (233)
T PRK11629 100 PDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRP-----SELSGGERQRVAIARALVNNPRLVLADE 171 (233)
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 89999999998654321 222334567889999999987766543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+|||+.++..+.+.|+++++ +|+|||+++|+++ ..+.+|++++|.+ |+++..|+.
T Consensus 172 Pt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~~-G~i~~~~~~ 229 (233)
T PRK11629 172 PTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMRD-GRLTAELSL 229 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEEC-CEEEEEecc
Confidence 9999999999999999999975 5899999999975 3445689999985 799998885
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=343.45 Aligned_cols=201 Identities=24% Similarity=0.345 Sum_probs=171.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCC-CCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~-~~~ 915 (1419)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .+.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 97 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK--PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLF 97 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCccEEEECCEECCCcCccHHHHhhceEEEecCchhccc
Confidence 469999999999999999999999999999999999876 468999999987643 234578999999863 334
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc--cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~--~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
..||+|++.|..... ....++..+.++++++.+||. +..+.. ++.||||||||++||+||+.+|++|+||
T Consensus 98 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~LSgGq~qrv~iAraL~~~P~llllD 169 (287)
T PRK13637 98 EETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFELSGGQKRRVAIAGVVAMEPKILILD 169 (287)
T ss_pred cccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 579999999865432 233445556789999999996 555554 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 229 (287)
T PRK13637 170 EPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GKCELQGTP 229 (287)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999865 899999999976 46678999999985 799999985
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=337.77 Aligned_cols=203 Identities=28% Similarity=0.379 Sum_probs=172.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----------ccccceEEEEcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQ 909 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gyv~Q 909 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ--PEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 3469999999999999999999999999999999999865 458999999987532 123567999999
Q ss_pred CCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 910 ~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
++.+++.+|++|++.+...... ....+...+.++++++.+++.+..+.. ++.||||||||++||++|+.+|++
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~Gq~qrv~la~al~~~p~l 165 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY-----PRRLSGGQQQRVAIARALAMRPEV 165 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----hhhCChHHHHHHHHHHHHhcCCCE
Confidence 9988889999999987543211 122333455678899999998766654 357999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 166 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 228 (250)
T PRK11264 166 ILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ-GRIVEQGPA 228 (250)
T ss_pred EEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999877999999999976 46678999999985 799998874
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=332.44 Aligned_cols=200 Identities=29% Similarity=0.418 Sum_probs=168.2
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c-ccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... . .++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 12 KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 4569999999999999999999999999999999999876 4689999999875431 1 24569999999999999
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHc-CCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+|++|++.+....+. ..+..+.+.++++.+ ++.+..+.. ++.||||||||++|||+|+.+|++|+||||
T Consensus 90 ~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 90 LTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred CcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999988654331 112234566777877 466555544 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 160 SEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 9999999999999999999877899999999976 46788999999985 799988874
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=336.60 Aligned_cols=201 Identities=26% Similarity=0.350 Sum_probs=171.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+.+||++|++.+++.+||+
T Consensus 13 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 13 GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 3569999999999999999999999999999999999865 458999999987643 234589999999888899999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 89 e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 89 DNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred HHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99987654321 223334456889999999987766543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEec-CCEEEEeCCC
Q 000562 1001 ARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPL 1054 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~-gG~~~~~G~~ 1054 (1419)
+.++..+.+.|+++++ .|+|||+++|+++ ++...+|++++|++ +|+++..++.
T Consensus 161 ~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 161 AFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999854 5899999999986 57788999999984 5899988765
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=335.68 Aligned_cols=201 Identities=28% Similarity=0.405 Sum_probs=172.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCcc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE--PTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 469999999999999999999999999999999999866 468999999987532 234567899999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc--ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~--~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
++||+.+....+. ...+...+.++++++.+++.+ ..+.. ++.||||||||++||++|+.+|++++|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654431 223344556889999999985 55544 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999865 899999999986 46788999999985 799988875
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=330.01 Aligned_cols=193 Identities=26% Similarity=0.342 Sum_probs=165.5
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 469999999999999999999999999999999999865 4689999999876421 24567999999998888
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+....+. ......++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 93 DRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999988754331 222334456789999999987666543 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++|
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDG 213 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCC
Confidence 9999999999999999999877999999999986 566789999999863
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=340.42 Aligned_cols=186 Identities=22% Similarity=0.208 Sum_probs=140.4
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHH
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 922 (1419)
+++.+++..++.-+..+++|+||+||||+++++.|..+ +..|-+.+++ +++++|-.|..+-+..+.|-+
T Consensus 378 ~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~--~~rgi~~~~~--------r~ri~~f~Qhhvd~l~~~v~~- 446 (582)
T KOG0062|consen 378 QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT--PTRGIVGRHP--------RLRIKYFAQHHVDFLDKNVNA- 446 (582)
T ss_pred hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC--cccceeeecc--------cceecchhHhhhhHHHHHhHH-
Confidence 68889999999999999999999999999999998654 3567666554 456899999755444444443
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 000562 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1419)
Q Consensus 923 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~ 1002 (1419)
+.+....+. ... ++..++-+..+||..-. . ...+.+||||||-||++|.....+|.+|+|||||+.||-.
T Consensus 447 vd~~~~~~p--G~~----~ee~r~hl~~~Gl~g~l---a-~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~d 516 (582)
T KOG0062|consen 447 VDFMEKSFP--GKT----EEEIRRHLGSFGLSGEL---A-LQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRD 516 (582)
T ss_pred HHHHHHhCC--CCC----HHHHHHHHHhcCCCchh---h-hccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHH
Confidence 223333331 112 22356677888886421 1 1225689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCC
Q 000562 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1419)
Q Consensus 1003 ~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1053 (1419)
+-..+.++|++. +..||+++|+.+ -+-..|+++.+.++|...-..|.
T Consensus 517 sl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ieg~ 563 (582)
T KOG0062|consen 517 SLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIEGG 563 (582)
T ss_pred HHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeeecc
Confidence 999999999886 568999999965 36678999999997544444554
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=337.68 Aligned_cols=206 Identities=27% Similarity=0.338 Sum_probs=170.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~ 914 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.++
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 3569999999999999999999999999999999999876 468999999987532 12456799999999888
Q ss_pred CCccHHHHHHHHhhhcC-----CCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 915 PGLTVLESLLFSAWLRL-----PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~-----~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
+.+||+|++.+...... .........+++++++++.+++.+..+.. +..||||||||++||++|+.+|++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred ccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999976421100 00011123345678899999998766654 357999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.+|++++|.+ |++++.|+..
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~ 231 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAPS 231 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCHH
Confidence 9999999999999999999999999764 899999999986 46678999999985 7999888753
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=326.79 Aligned_cols=200 Identities=30% Similarity=0.385 Sum_probs=168.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|. +|+|.++|+++.. .++.++|++|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999998775 9999999988753 356799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.++....+... . .....++.+++.+||++..++.++ .|
T Consensus 92 e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~L 132 (220)
T cd03293 92 DNVALGLELQGVPK----------A------------------------EARERAEELLELVGLSGFENAYPH-----QL 132 (220)
T ss_pred HHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCChhhhhCCcc-----cC
Confidence 99988643321100 0 011236778899999877666554 69
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 385 (1419)
|||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++.... +++|+.++|+..++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRET-GKTVLLVTHDIDEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEecCHHHHHHhCCEEEEEECCCCE
Confidence 9999999999999999999999999999999999999999999886432 4566778899999999999999999 799
Q ss_pred EEEEcCh
Q 000562 386 IVYQGPR 392 (1419)
Q Consensus 386 iv~~G~~ 392 (1419)
++..++.
T Consensus 212 i~~~~~~ 218 (220)
T cd03293 212 IVAEVEV 218 (220)
T ss_pred EEEEEEe
Confidence 9988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=330.11 Aligned_cols=204 Identities=25% Similarity=0.358 Sum_probs=172.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 222 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999875 9999999998765321 357999999999888
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
.+|++||+.+.....+.. . ......++.+++.+||++..++.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~-------~---------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 138 (233)
T cd03258 96 SRTVFENVALPLEIAGVP-------K---------------------------AEIEERVLELLELVGLEDKADAYP--- 138 (233)
T ss_pred CCcHHHHHHHHHHHcCCC-------H---------------------------HHHHHHHHHHHHHCCChhhhhcCh---
Confidence 999999998764322110 0 001123567899999987766655
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++. ++++|+.++|+..++.+++|++++|+
T Consensus 139 --~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tvii~sH~~~~~~~~~d~i~~l~ 215 (233)
T cd03258 139 --AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRE-LGLTIVLITHEMEVVKRICDRVAVME 215 (233)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 24567778899999999999999999
Q ss_pred CCeEEEEcChhhH
Q 000562 383 EGQIVYQGPRVSV 395 (1419)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1419)
+|++++.|+.+++
T Consensus 216 ~G~i~~~~~~~~~ 228 (233)
T cd03258 216 KGEVVEEGTVEEV 228 (233)
T ss_pred CCEEEEecCHHHH
Confidence 9999999987765
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=327.64 Aligned_cols=200 Identities=31% Similarity=0.434 Sum_probs=168.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999998775 9999999998754332 4579999999988889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.++....+.. . . .....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~-------~---~------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (213)
T cd03259 90 AENIAFGLKLRGVP-------K---A------------------------EIRARVRELLELVGLEGLLNRYPH-----E 130 (213)
T ss_pred HHHHHhHHHHcCCC-------H---H------------------------HHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 99998764321100 0 0 011235678889999877776654 5
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRE-LGITTIYVTHDQEEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998753 245677788999999999999999999999
Q ss_pred EEEc
Q 000562 387 VYQG 390 (1419)
Q Consensus 387 v~~G 390 (1419)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=308.24 Aligned_cols=209 Identities=20% Similarity=0.341 Sum_probs=180.7
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC----ceEEEEccCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVA 222 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 222 (1419)
++++++|||+.+++||+++++|||||||||...++.|+..++ +|+|.+||.+++..+.. .-+||.||++..|-
T Consensus 16 kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr 92 (243)
T COG1137 16 KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR 92 (243)
T ss_pred CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence 347999999999999999999999999999999999999887 99999999999887653 45899999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
.+||+|||.-..+.+....+ ..+.+.+.+.+|+.++|.+++|..-.
T Consensus 93 ~LtV~dNi~~vlE~~~~d~~--------------------------------~~~~~~~l~~LL~ef~i~hlr~~~a~-- 138 (243)
T COG1137 93 KLTVEDNIMAVLEIREKDLK--------------------------------KAERKEELDALLEEFHITHLRDSKAY-- 138 (243)
T ss_pred cCcHHHHHHHHHhhhhcchh--------------------------------HHHHHHHHHHHHHHhchHHHhcCccc--
Confidence 99999999865544321100 00123346789999999999987643
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.||||||+|+-|||||+.+|+.++||||++|+||.+..+|.+.++++.+. +.-|++.-|+..|+.+++||.++++
T Consensus 139 ---sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~r--giGvLITDHNVREtL~i~dRaYIi~ 213 (243)
T COG1137 139 ---SLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDR--GIGVLITDHNVRETLDICDRAYIIS 213 (243)
T ss_pred ---ccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhC--CceEEEccccHHHHHhhhheEEEEe
Confidence 59999999999999999999999999999999999999999999999763 5556667899999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1419)
+|++..+|+++++.+
T Consensus 214 ~G~vla~G~p~ei~~ 228 (243)
T COG1137 214 DGKVLAEGSPEEIVN 228 (243)
T ss_pred cCeEEecCCHHHHhc
Confidence 999999999998863
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=338.39 Aligned_cols=203 Identities=19% Similarity=0.299 Sum_probs=171.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d~~~ 914 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.++|++|++.++
T Consensus 19 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 19 NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 3569999999999999999999999999999999999876 4689999999875421 2345799999999888
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
+.+|+.||+.+...... .......++.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 97 ~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDE 169 (269)
T PRK11831 97 TDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SELSGGMARRAALARAIALEPDLIMFDE 169 (269)
T ss_pred CCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 99999999987643221 1223334456788999999988776653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 170 Pt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 228 (269)
T PRK11831 170 PFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVAD-KKIVAHGSA 228 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999765 899999999975 57778999999985 799999875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.61 Aligned_cols=200 Identities=28% Similarity=0.437 Sum_probs=164.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCC--CCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lT 918 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+. +.+|
T Consensus 11 ~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 11 GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK--PTSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 3569999999999999999999999999999999999865 46899999998653 3456799999997653 3489
Q ss_pred HHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 919 VLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|+||+.+....+... ....+...+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~ 161 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFA 161 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 999998754321100 0111223456789999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ | +++.|
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 99999999999999999878999999999986 46678999999974 4 55554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=328.67 Aligned_cols=194 Identities=27% Similarity=0.357 Sum_probs=166.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999865 468999999987532 124567999999999999
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+....+. ...++.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALP-----AELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988754432 223334456789999999987766553 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCE
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~ 1047 (1419)
|+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|++ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999975 46667999999985 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=339.42 Aligned_cols=206 Identities=23% Similarity=0.313 Sum_probs=171.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-------CCCceEEEEccCCC-
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDW- 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 219 (1419)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 35999999999999999999999999999999999998775 99999999987531 12357999999862
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
.+...||+||+.|+....+... .+....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVSE----------------------------------EDAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 3446799999998654221100 00122467889999996 455655
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|++++.. .+++|+.++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~-~g~tviiitHd~~~~~~~~drv 216 (290)
T PRK13634 143 P-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKE-KGLTTVLVTHSMEDAARYADQI 216 (290)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998754 3566777999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIF 234 (290)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=349.60 Aligned_cols=205 Identities=28% Similarity=0.421 Sum_probs=165.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1419)
++++|+|+++++|+.++|+|+||||||||+++|+|+++++ +|+|.+||++..+.. .+++++||+|++.+++ .|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 6899999999999999999999999999999999999876 999999999988765 4689999999998555 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
+||||.++.... ..+ ++.+..+. ..+.+.+.-+...||.+|+ ..+
T Consensus 411 ireNi~l~~~~~----s~e------------------~i~~al~~------------a~l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPDA----SDE------------------EIIAALDQ------------AGLLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCcC----CHH------------------HHHHHHHH------------hcHHHhhcCCCcccchhcc-CCC
Confidence 999999864211 000 11000000 0112222225577999996 567
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+|||||+|||++|||++.+++++++||||++||.++...|.+.|.++++ ++| ++.++|.. +...-+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~kt-vl~itHrl-~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKT-VLVITHRL-EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCe-EEEEEcCh-HHHhcCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999999999886 344 44466654 4456789999999999
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
++++|.++++.
T Consensus 532 l~~~g~~~~L~ 542 (559)
T COG4988 532 LVEQGTHEELS 542 (559)
T ss_pred eeccCCHHHHh
Confidence 99999999885
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=335.75 Aligned_cols=206 Identities=22% Similarity=0.306 Sum_probs=174.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+
T Consensus 37 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 37 TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 46999999999999999999999999999999999999775 8999999988754321 3569999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++++||+||+.+.....+... . .....++++++.+||++..++.++
T Consensus 114 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 159 (269)
T cd03294 114 LPHRTVLENVAFGLEVQGVPR----------A------------------------EREERAAEALELVGLEGWEHKYPD 159 (269)
T ss_pred CCCCcHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCCcc
Confidence 889999999988643321100 0 011235678899999887777664
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|++++
T Consensus 160 -----~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiii~tH~~~~~~~~~d~v~~ 233 (269)
T cd03294 160 -----ELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE-LQKTIVFITHDLDEALRLGDRIAI 233 (269)
T ss_pred -----cCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhcCEEEE
Confidence 59999999999999999999999999999999999999999999998753 345677788999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|++++.|+.+++.
T Consensus 234 l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 234 MKDGRLVQVGTPEEIL 249 (269)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=337.56 Aligned_cols=222 Identities=27% Similarity=0.366 Sum_probs=179.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-------CCceEEEEccCC-CC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQD-WQ 220 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-~~ 220 (1419)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.++.... .++.++||+|++ ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999876 999999999875311 245799999986 24
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-ccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 299 (1419)
+...||.||+.|+....+... .+...++.++++.+||. ...++.
T Consensus 97 l~~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~- 141 (288)
T PRK13643 97 LFEETVLKDVAFGPQNFGIPK----------------------------------EKAEKIAAEKLEMVGLADEFWEKS- 141 (288)
T ss_pred cccchHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhccCC-
Confidence 445799999998754322100 00122467788999996 344544
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+. +.+|+.++|+..++.+++|+|+
T Consensus 142 ----~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~--g~til~vtHd~~~~~~~~dri~ 215 (288)
T PRK13643 142 ----PFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQS--GQTVVLVTHLMDDVADYADYVY 215 (288)
T ss_pred ----cccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEE
Confidence 4579999999999999999999999999999999999999999999988652 5667778999999999999999
Q ss_pred EEcCCeEEEEcChhhHH---HHHHhCCCCCCCCCChHH
Q 000562 380 LLSEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVAD 414 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~---~~F~~~G~~~p~~~~~ad 414 (1419)
+|++|+++++|+++++. ++++..|+.+|.....++
T Consensus 216 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 253 (288)
T PRK13643 216 LLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFAD 253 (288)
T ss_pred EEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHH
Confidence 99999999999998874 334566777666544443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=327.62 Aligned_cols=198 Identities=33% Similarity=0.490 Sum_probs=168.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+..+|+|+|+++++| +++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 12 KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 356999999999999 999999999999999999999866 468999999987543 234567999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
|+|++.+....+. ....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 89 v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 160 (211)
T cd03264 89 VREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160 (211)
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 9999988655432 122333456788999999987766553 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
||+.++..+.+.|+++++ +.|||+++|++. .+.+.+|++++|++ |+++..|
T Consensus 161 LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 161 LDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999976 599999999976 46678999999985 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=333.96 Aligned_cols=203 Identities=25% Similarity=0.365 Sum_probs=172.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 15 ~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 15 GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 4579999999999999999999999999999999999866 468999999987542 1234679999999988888
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
+||+||+.+....+. ....++.+..++++++.+++.+..+.. .+.||||||||++||++|+.+|++|+|||||
T Consensus 93 ~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 93 LSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred CcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987643321 122233456688899999998766554 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.+++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 221 (241)
T PRK10895 166 AGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHGTP 221 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeCCH
Confidence 999999999999999999877999999999975 57788999999985 799998875
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-35 Score=327.31 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=164.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 35999999999999999999999999999999999998775 999999998875432 235799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.++....+... .+....++++++.+||++..++.++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 137 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVPP----------------------------------RDANERVSAALEKVGLEGKAHALPM- 137 (216)
T ss_pred ccccHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh-
Confidence 99999999988654321100 0012246778899999877766554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+.+++.+++|++++|
T Consensus 138 ----~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~vsH~~~~~~~~~d~i~~l 211 (216)
T TIGR00960 138 ----QLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRR--GTTVLVATHDINLVETYRHRTLTL 211 (216)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999988642 456777889999999999999999
Q ss_pred cCCeE
Q 000562 382 SEGQI 386 (1419)
Q Consensus 382 ~~G~i 386 (1419)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99975
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.69 Aligned_cols=205 Identities=29% Similarity=0.376 Sum_probs=172.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 36999999999999999999999999999999999998775 999999998764321 2357999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 90 v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 130 (220)
T cd03265 90 GWENLYIHARLYGVPG----------------------------------AERRERIDELLDFVGLLEAADRLVK----- 130 (220)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-----
Confidence 9999988643321100 0012246778999999887776664
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|++|+
T Consensus 131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~tH~~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEF-GMTILLTTHYMEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEeCCE
Confidence 599999999999999999999999999999999999999999999987532 4567778999999999999999999999
Q ss_pred EEEEcChhhH
Q 000562 386 IVYQGPRVSV 395 (1419)
Q Consensus 386 iv~~G~~~~~ 395 (1419)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999887653
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=304.56 Aligned_cols=206 Identities=28% Similarity=0.464 Sum_probs=174.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC---ceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lT 225 (1419)
.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++++||++++...+. +.-+..+|+-.+-+..|
T Consensus 15 ~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFt 91 (259)
T COG4559 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFT 91 (259)
T ss_pred eeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceE
Confidence 5899999999999999999999999999999999999886 99999999999887653 56689999987777889
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+|-+.++..-.+.+.. | .+....++..|...++.+.+... .+
T Consensus 92 v~eVV~mGr~p~~~g~~-----------------~---------------~e~~~i~~~ala~~d~~~la~R~-----y~ 134 (259)
T COG4559 92 VQEVVQMGRIPHRSGRE-----------------P---------------EEDERIAAQALAATDLSGLAGRD-----YR 134 (259)
T ss_pred HHHHHHhcccccccCCC-----------------c---------------hhhHHHHHHHHHHcChhhhhccc-----hh
Confidence 99999998653322111 0 01233467788888888776533 45
Q ss_pred CCChHHhHHHHHHHHHhC------CCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 306 GISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~------~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
.|||||||||.+||.|+. ++++||||||||+||...+..+++..|++++. +..|+.++|+..-+..++|+|+
T Consensus 135 ~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~--g~~V~~VLHDLNLAA~YaDriv 212 (259)
T COG4559 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE--GGAVLAVLHDLNLAAQYADRIV 212 (259)
T ss_pred hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc--CCcEEEEEccchHHHHhhheee
Confidence 799999999999999974 45699999999999999999999999999985 4566778999999999999999
Q ss_pred EEcCCeEEEEcChhhHH
Q 000562 380 LLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~ 396 (1419)
+|++||++..|++++++
T Consensus 213 ll~~Grv~a~g~p~~vl 229 (259)
T COG4559 213 LLHQGRVIASGSPQDVL 229 (259)
T ss_pred eeeCCeEeecCCHHHhc
Confidence 99999999999998876
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=313.03 Aligned_cols=210 Identities=24% Similarity=0.365 Sum_probs=189.6
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCC
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~ 912 (1419)
.+.+++++.+.+++|+||.++||++++++|+|||||||++++|.|... +.+|+|.++|.+.++. .+.+|||.|.+-.
T Consensus 6 e~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERG 82 (300)
T COG4152 6 EGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERG 82 (300)
T ss_pred ecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhc
Confidence 445566788999999999999999999999999999999999999877 5699999999987654 3557899999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
++|.+||.|.|.|-|.|+. .+.++....++..|+.+++.......+ ..||.|++|++.+-.+++++|++++|
T Consensus 83 Ly~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kI-----k~LSKGnqQKIQfisaviHePeLlIL 154 (300)
T COG4152 83 LYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKI-----KELSKGNQQKIQFISAVIHEPELLIL 154 (300)
T ss_pred cCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchH-----HHhhhhhhHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999884 455666777899999999998887765 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|||.|||||.+.+.+-+.+.++++.|.|||+++|+++ .+-++||++++|++ |+.|.+|+..
T Consensus 155 DEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred cCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 9999999999999999999999999999999999987 68899999999985 7999999863
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=330.72 Aligned_cols=201 Identities=27% Similarity=0.416 Sum_probs=169.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
++.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ....+.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 13 ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 3569999999999999999999999999999999999865 468999999987532 122357899999988888999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
++|++.+.+..+. .......+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 91 ~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~ 162 (236)
T TIGR03864 91 VRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVG 162 (236)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 9999987654431 223334456788999999987766554 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 999 LDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+.++..+.+.|+++++ +|+|||+++|+++. + ..+|++++|++ |+++..|+.
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 163 LDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-I-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-H-hhCCEEEEEeC-CeEEEeCCH
Confidence 999999999999999975 58999999999863 4 45999999985 789988874
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=327.63 Aligned_cols=193 Identities=28% Similarity=0.393 Sum_probs=162.8
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999865 468999999987542 234567999999974 36678
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|++|++.+....+. .......+.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++++|||||+
T Consensus 92 t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 99999988653321 222333456788999999987666543 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|.+|
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G 210 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999877999999999976 466679999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=327.57 Aligned_cols=199 Identities=25% Similarity=0.376 Sum_probs=171.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... .+.++|++|++.+++.+|++
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 12 KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 4579999999999999999999999999999999999865 56899999998754322 25789999999888889999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|++.+....+. .. ++.+.++++.+++.+..+..+ ..||||||||++||++++.+|++++|||||+|||
T Consensus 89 ~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 89 ENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred HHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 99987654432 11 234678899999987766543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+..+
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 210 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChhh
Confidence 99999999999999877999999999986 46688999999985 79999998643
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=328.22 Aligned_cols=196 Identities=27% Similarity=0.371 Sum_probs=166.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~ 915 (1419)
++.+|+++|++++|||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 12 ~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 12 DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 3569999999999999999999999999999999999876 468999999987531 234567999999999889
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+...... ....++..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++||||
T Consensus 90 ~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP 162 (213)
T cd03262 90 HLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQQQRVAIARALAMNPKVMLFDEP 162 (213)
T ss_pred CCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999987642111 1223334556788999999987666553 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCE
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~ 1047 (1419)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+
T Consensus 163 ~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 163 TSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred ccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999877999999999986 56678999999986 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=341.51 Aligned_cols=201 Identities=25% Similarity=0.327 Sum_probs=169.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCCC-C
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~-~ 913 (1419)
..+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|+++.. ..+++.+|||+|++. .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ--PTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQ 97 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhh
Confidence 469999999999999999999999999999999999876 468999999987631 234567999999863 2
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+...||+||+.|+.... ....++..++++++++.++|. +..+.. ++.|||||||||+||++|+.+|++|+|
T Consensus 98 l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~lAraL~~~P~llll 169 (290)
T PRK13634 98 LFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PFELSGGQMRRVAIAGVLAMEPEVLVL 169 (290)
T ss_pred hhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33579999999875432 223344456789999999996 555554 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|++++++ |.|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~-G~i~~~g~~ 230 (290)
T PRK13634 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHK-GTVFLQGTP 230 (290)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999765 899999999986 57788999999985 899999985
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=338.33 Aligned_cols=201 Identities=25% Similarity=0.326 Sum_probs=171.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
..+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .++..
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL--PQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 469999999999999999999999999999999999876 468999999987643 234567999999863 44568
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+|++.|..... ........+.++++++.++|.+..+..+ ..||||||||++||+||+.+|++|+|||||+
T Consensus 96 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~ 167 (274)
T PRK13647 96 TVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167 (274)
T ss_pred cHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999998864322 2233344456889999999987777654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+++.|++++++|+|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 222 (274)
T PRK13647 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEGDK 222 (274)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999877999999999976 46678999999985 799999985
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=342.08 Aligned_cols=206 Identities=30% Similarity=0.387 Sum_probs=174.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 35999999999999999999999999999999999998775 999999998874322 2467999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.+.....+... . +....++.+++.+||++..++.++
T Consensus 94 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~ll~~~~l~~~~~~~~~----- 134 (303)
T TIGR01288 94 VRENLLVFGRYFGMST----------R------------------------EIEAVIPSLLEFARLESKADVRVA----- 134 (303)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCChhHhcCchh-----
Confidence 9999986443221100 0 011235678889999988877765
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.++||+|++|++|+
T Consensus 135 ~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~--g~til~~sH~~~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 135 LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR--GKTILLTTHFMEEAERLCDRLCVLESGR 212 (303)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEECCCHHHHHHhCCEEEEEECCE
Confidence 59999999999999999999999999999999999999999999998652 5667778999999999999999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999988753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=335.70 Aligned_cols=204 Identities=23% Similarity=0.326 Sum_probs=171.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCC-CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1419)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++. .++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 21 YTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred eeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 5999999999999999999999999999999999999876 9999999998864322 357999999973 67788
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+|||.|+....+... .+....++++++.+||++..+..+
T Consensus 98 tv~eni~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~----- 138 (279)
T PRK13650 98 TVEDDVAFGLENKGIPH----------------------------------EEMKERVNEALELVGMQDFKEREP----- 138 (279)
T ss_pred cHHHHHHhhHHhCCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCc-----
Confidence 99999988643221100 001224677899999987766655
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
..|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++ ..+|+|++|++|
T Consensus 139 ~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tilivtH~~~~~-~~~dri~~l~~G 216 (279)
T PRK13650 139 ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLDEV-ALSDRVLVMKNG 216 (279)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999987643 55666688888888 589999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
+++..|+++++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13650 217 QVESTSTPRELF 228 (279)
T ss_pred EEEEECCHHHHH
Confidence 999999988764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=330.01 Aligned_cols=200 Identities=25% Similarity=0.309 Sum_probs=163.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCC--CCC
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IHS 914 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d--~~~ 914 (1419)
.+|+|+|+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++ .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999865 468999999987643 23456799999998 456
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
+.+||+||+.+......+. ...+..+..++++++.+++. +..+.. +..||||||||++|||+|+.+|++|+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGKL-SKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 7899999998865433221 11111122235788889884 455544 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999866 899999999986 46668999999985 7887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=361.85 Aligned_cols=216 Identities=25% Similarity=0.423 Sum_probs=180.8
Q ss_pred cceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCc
Q 000562 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1419)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1419)
.-.+.|+|+++.++.. ++.++|+|+||+|+|||.+||+||||+||||+.++|-+... +.+|+|.+||+
T Consensus 463 ~G~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--PtsG~IllDG~ 530 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTSGRILLDGV 530 (716)
T ss_pred cceEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCCCeEEECCe
Confidence 3468899998888643 35679999999999999999999999999999999998766 67999999999
Q ss_pred cCCc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHH-----HHHHHHHHHcCCccccCCcccCCC
Q 000562 894 PKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR-----AFVEEVMELVELTSLSGALIGLPG 965 (1419)
Q Consensus 894 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l~l~~~~~~~~g~~~ 965 (1419)
|+++ ..+++.+|+|.|+|.+|.. |++||+.|+.. +.+.++.. +.+.+-+. ++.+-.|+.+|..|
T Consensus 531 ~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEkG 602 (716)
T KOG0058|consen 531 PISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEKG 602 (716)
T ss_pred ehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccccCCcc
Confidence 9754 4578899999999999864 99999999753 22322221 12222222 45666789999766
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
. .||||||||++|||||++||+||||||+||.||+++...|.++|.++.+ ++|||++.|+.| ..+.+|+|+++++
T Consensus 603 ~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad~Ivvi~~- 677 (716)
T KOG0058|consen 603 S-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHADQIVVIDK- 677 (716)
T ss_pred c-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--HhhhccEEEEEcC-
Confidence 4 6999999999999999999999999999999999999999999998764 699999999975 6789999999986
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|.-
T Consensus 678 G~V~E~G~h 686 (716)
T KOG0058|consen 678 GRVVEMGTH 686 (716)
T ss_pred CeEEecccH
Confidence 799999963
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=334.33 Aligned_cols=202 Identities=22% Similarity=0.316 Sum_probs=171.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----------------ccccceE
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARIS 904 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~~ 904 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.+
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 3569999999999999999999999999999999999876 458999999986531 2345679
Q ss_pred EEEccCCCCCCCccHHHHHHHHhh-hcCCCCCcHHHHHHHHHHHHHHcCCcccc-CCcccCCCCCCCCHHHHHHHHHHHH
Q 000562 905 GYCEQNDIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVE 982 (1419)
Q Consensus 905 gyv~Q~d~~~~~lTv~E~l~f~a~-lr~~~~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~lSgGqrqrl~iA~~ 982 (1419)
+|++|++.+++.+|++||+.+... .+ .....+.++++.++++.+++.+.. +.. +..||||||||++|||+
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~G~~qrv~lara 166 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKQEARERAVKYLAKVGIDERAQGKY-----PVHLSGGQQQRVSIARA 166 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHH
Confidence 999999999999999999987542 21 122334456688999999997653 433 35799999999999999
Q ss_pred HhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 983 LVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 983 L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.+|++++|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++...+|++++|++ |++++.|+.
T Consensus 167 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 167 LAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGAP 236 (257)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999999999877999999999986 46667999999986 799998875
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=327.91 Aligned_cols=196 Identities=26% Similarity=0.327 Sum_probs=166.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---c---cccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E---TFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 469999999999999999999999999999999999876 468999999987532 1 24567999999998888
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+....+. ...++..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654331 223334456788999999987666543 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEE
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~ 1049 (1419)
|+|||+.++..+.+.|++++++|.|||+++|+++ ++...+|++++|++ |+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999877899999999986 46677899999986 6653
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=329.91 Aligned_cols=214 Identities=26% Similarity=0.365 Sum_probs=173.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 36999999999999999999999999999999999998775 9999999998765432 2459999999998999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++........ .. . ... .. ...+....++++++.+||++..++.+
T Consensus 90 ~tv~~~l~~~~~~~~~~~-~~------~---~~~-~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~---- 141 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-LL------L---ARA-RR-------------EEREARERAEELLERVGLADLADRPA---- 141 (236)
T ss_pred CCHHHHHHHHHhhccccc-cc------c---ccc-cc-------------cHHHHHHHHHHHHHHcCccchhhCCh----
Confidence 999999988654221100 00 0 000 00 00011234678899999987666655
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
+.|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++++ . +++|+.++|+..++.+++|++++|++
T Consensus 142 -~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~vsH~~~~~~~~~d~i~~l~~ 218 (236)
T cd03219 142 -GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-R-GITVLLVEHDMDVVMSLADRVTVLDQ 218 (236)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999875 3 45677788999999999999999999
Q ss_pred CeEEEEcChhhH
Q 000562 384 GQIVYQGPRVSV 395 (1419)
Q Consensus 384 G~iv~~G~~~~~ 395 (1419)
|++++.|+++++
T Consensus 219 G~i~~~~~~~~~ 230 (236)
T cd03219 219 GRVIAEGTPDEV 230 (236)
T ss_pred CEEEeecCHHHh
Confidence 999999988775
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=328.83 Aligned_cols=209 Identities=29% Similarity=0.391 Sum_probs=172.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1419)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 35999999999999999999999999999999999998775 9999999988754332 4579999999988889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.++....+...+.+ . .+....++.+++.+||++..++.++ .
T Consensus 92 ~e~l~~~~~~~~~~~~~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (239)
T cd03296 92 FDNVAFGLRVKPRSERPP------E------------------------AEIRAKVHELLKLVQLDWLADRYPA-----Q 136 (239)
T ss_pred HHHHhhhhhhccccccCC------H------------------------HHHHHHHHHHHHHcCChhhhhcChh-----h
Confidence 999988643221100000 0 0011235678899999876666554 5
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+.+|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tvii~sH~~~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDEL-HVTTVFVTHDQEEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCeE
Confidence 99999999999999999999999999999999999999999999987532 45677788998999999999999999999
Q ss_pred EEEcChhhH
Q 000562 387 VYQGPRVSV 395 (1419)
Q Consensus 387 v~~G~~~~~ 395 (1419)
++.|+.+++
T Consensus 216 ~~~~~~~~~ 224 (239)
T cd03296 216 EQVGTPDEV 224 (239)
T ss_pred EEecCHHHH
Confidence 999988765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=341.32 Aligned_cols=201 Identities=25% Similarity=0.344 Sum_probs=170.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC-------------------------
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------------------------- 896 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~------------------------- 896 (1419)
..+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL--PDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKI 97 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEEeceeccccccccccccccccccccccccccc
Confidence 359999999999999999999999999999999999876 45799999986531
Q ss_pred --cccccceEEEEccCC-CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHH
Q 000562 897 --QETFARISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTE 972 (1419)
Q Consensus 897 --~~~~~~~~gyv~Q~d-~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgG 972 (1419)
....++.+|||+|++ ..+...||+|++.|+.... ....++..++++++++.+||. +..+.. +..||||
T Consensus 98 ~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgG 169 (305)
T PRK13651 98 KKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYIELVGLDESYLQRS-----PFELSGG 169 (305)
T ss_pred chHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHH
Confidence 123456799999985 3344579999999875432 233445556789999999996 566654 3579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 973 qrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||+++|+++ .+.+.+|++++|++ |++++.|
T Consensus 170 qkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~adrv~vl~~-G~i~~~g 247 (305)
T PRK13651 170 QKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLD-NVLEWTKRTIFFKD-GKIIKDG 247 (305)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999976 47788999999985 7999999
Q ss_pred CC
Q 000562 1053 PL 1054 (1419)
Q Consensus 1053 ~~ 1054 (1419)
+.
T Consensus 248 ~~ 249 (305)
T PRK13651 248 DT 249 (305)
T ss_pred CH
Confidence 86
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=332.12 Aligned_cols=203 Identities=27% Similarity=0.343 Sum_probs=169.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
+..+|+|+|++|++||+++|+|+||||||||+++|+|..++. ..+|+|.++|.+... ...++.++|++|++.
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 92 (247)
T TIGR00972 13 EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN 92 (247)
T ss_pred CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc
Confidence 346999999999999999999999999999999999986521 128999999987642 234567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc----cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~----~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++ .|++||+.+....+. .....+..+.++++++.+++. +..+.. +..||||||||++||++|+.+|+
T Consensus 93 ~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~ 164 (247)
T TIGR00972 93 PFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPE 164 (247)
T ss_pred cCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCC
Confidence 888 999999998754431 112334455678899999997 444443 45799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999876 489999999986 46778999999986 799998875
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=325.97 Aligned_cols=195 Identities=25% Similarity=0.387 Sum_probs=163.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999998775 9999999998765431 3579999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++.+||+||+.++....+... . .....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVPK----------K------------------------ERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhcChh
Confidence 999999999988654321100 0 011236778999999877666554
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++. .+|++++
T Consensus 140 -----~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~-~~d~v~~ 212 (218)
T cd03255 140 -----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEA-GTTIVVVTHDPELAE-YADRIIE 212 (218)
T ss_pred -----hcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEECCHHHHh-hhcEEEE
Confidence 699999999999999999999999999999999999999999999987532 456666888888876 9999999
Q ss_pred EcCCeE
Q 000562 381 LSEGQI 386 (1419)
Q Consensus 381 L~~G~i 386 (1419)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=374.05 Aligned_cols=215 Identities=26% Similarity=0.398 Sum_probs=178.8
Q ss_pred hcCCCcceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccC
Q 000562 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQ 217 (1419)
Q Consensus 141 ~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~ 217 (1419)
.++.+++.+||+|+|+++++|+.+||+|||||||||.+.+|-..++|. +|+|.++|+++++.+. |+.+|.|+|+
T Consensus 996 ~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQE 1072 (1228)
T KOG0055|consen 996 AYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQE 1072 (1228)
T ss_pred eCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccC
Confidence 356678889999999999999999999999999999999999999886 9999999999998875 5889999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccc
Q 000562 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1419)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1419)
|.+|. .|+||||.++.. .-..+.+.++++... ..+. +.+|++.+||
T Consensus 1073 P~LF~-~TIrENI~YG~~----~vs~~eIi~Aak~AN--------------------------aH~F---I~sLP~GyDT 1118 (1228)
T KOG0055|consen 1073 PVLFN-GTIRENIAYGSE----EVSEEEIIEAAKLAN--------------------------AHNF---ISSLPQGYDT 1118 (1228)
T ss_pred chhhc-ccHHHHHhccCC----CCCHHHHHHHHHHhh--------------------------hHHH---HhcCcCcccC
Confidence 99765 599999999721 111222223222211 1111 4579999999
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.||+++. +||||||||++||||+++||+||+|||.||+||+++.+-+.++|.+... ++|+|+ +.|. ..+.+-+|.
T Consensus 1119 ~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~Iv-IAHR-LSTIqnaD~ 1193 (1228)
T KOG0055|consen 1119 RVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIV-IAHR-LSTIQNADV 1193 (1228)
T ss_pred ccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEE-Eecc-hhhhhcCCE
Confidence 9998765 6999999999999999999999999999999999999999999998753 677776 4443 445678999
Q ss_pred EEEEcCCeEEEEcChhhHHH
Q 000562 378 VILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~~ 397 (1419)
|+|+++|+|+++|++++++.
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999999975
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=340.37 Aligned_cols=208 Identities=20% Similarity=0.250 Sum_probs=174.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCC--C
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1419)
..+|+|||++|++||+++|+|+||||||||+++|+|.+.+. +|+|.++|.++.+.. .++.++||+|++ .
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 57999999999999999999999999999999999999775 999999999886543 235799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
+++.+||.||+.+......... + + .+....++++++.+||. ...++.
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~--~------~------------------------~~~~~~~~~~l~~vgl~~~~~~~~ 158 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKL--S------R------------------------QEVKDRVKAMMLKVGLLPNLINRY 158 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCC--C------H------------------------HHHHHHHHHHHHHcCCChHHhcCC
Confidence 7889999999988643221000 0 0 01123467789999994 344544
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
...|||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 159 -----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-~~til~iTHdl~~~~~~~dri 232 (331)
T PRK15079 159 -----PHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDLAVVKHISDRV 232 (331)
T ss_pred -----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999987643 567777999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 233 ~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 233 LVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEECCEEEEEcCHHHHH
Confidence 999999999999988874
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=332.91 Aligned_cols=193 Identities=22% Similarity=0.304 Sum_probs=166.5
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ..++.++|++|++.+++.+||+|
T Consensus 25 ~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~--~~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 25 RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET--PSAGELLAGTAPLA--EAREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEHH--HhhCceEEEecCccCCCCCcHHH
Confidence 469999999999999999999999999999999999866 45899999997643 34567999999998888899999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~ 1001 (1419)
++.+... . ..++.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+|||+
T Consensus 101 nl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 101 NVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred HHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 9987421 0 12345788999999987766543 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1002 ~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
.++..+.+.|+++++ .|+|||+++|+++ .+.+.+|++++|.+ |++++.|+.
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 999999999999865 4899999999976 46678999999985 799988874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=334.19 Aligned_cols=206 Identities=23% Similarity=0.262 Sum_probs=171.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c-ccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... . .+..++|++|++.+++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 17 GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 4579999999999999999999999999999999999866 4689999999875431 1 23358999999999999
Q ss_pred ccHHHHHHHHhhhcCC----------C--CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 000562 917 LTVLESLLFSAWLRLP----------S--EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~----------~--~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~ 984 (1419)
+||+||+.+....... . .....+..+.+++.++.+++.+..+..+ +.||||||||++||++|+
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~la~al~ 169 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA-----GNLAYGQQRRLEIARCMV 169 (255)
T ss_pred CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh-----hhCCHHHHHHHHHHHHHh
Confidence 9999999986431110 0 0011123356788899999987666553 479999999999999999
Q ss_pred hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 170 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 170 TQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIYVVNQ-GTPLANGTPE 239 (255)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEecCCHH
Confidence 999999999999999999999999999999875 899999999976 56788999999985 7999998853
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.09 Aligned_cols=201 Identities=20% Similarity=0.309 Sum_probs=167.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999998765 9999999998765432 2569999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++.+||+||+.+.....+... .+.+..++++++.+||++..++.+
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~- 143 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKKP----------------------------------AEINSRALEMLAAVGLEHRANHRP- 143 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhhCCh-
Confidence 889999999988643221000 001224677899999987766654
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+.|||||||||+||+|++.+|++++|||||+|||+.++.++.+.|+++++. ++++|+.++|+.+++.. +|++++
T Consensus 144 ----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tvii~sH~~~~~~~-~~~~~~ 217 (233)
T PRK11629 144 ----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRL-QGTAFLVVTHDLQLAKR-MSRQLE 217 (233)
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeCCHHHHHh-hCEEEE
Confidence 469999999999999999999999999999999999999999999988653 34666678888888766 589999
Q ss_pred EcCCeEEEEcCh
Q 000562 381 LSEGQIVYQGPR 392 (1419)
Q Consensus 381 L~~G~iv~~G~~ 392 (1419)
|++|++++.|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999998864
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=327.48 Aligned_cols=204 Identities=21% Similarity=0.342 Sum_probs=172.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 36999999999999999999999999999999999998775 9999999988754332 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 90 ~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 132 (232)
T cd03218 90 LTVEENILAVLEIRGLSK----------------------------------KEREEKLEELLEEFHITHLRKSKAS--- 132 (232)
T ss_pred CcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh---
Confidence 999999987543211000 0012245778899999877666554
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|+|++|++
T Consensus 133 --~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~ 208 (232)
T cd03218 133 --SLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDR--GIGVLITDHNVRETLSITDRAYIIYE 208 (232)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999988752 45677788999999999999999999
Q ss_pred CeEEEEcChhhH
Q 000562 384 GQIVYQGPRVSV 395 (1419)
Q Consensus 384 G~iv~~G~~~~~ 395 (1419)
|++++.|+.+++
T Consensus 209 G~i~~~~~~~~~ 220 (232)
T cd03218 209 GKVLAEGTPEEI 220 (232)
T ss_pred CeEEEEeCHHHh
Confidence 999999988765
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=338.41 Aligned_cols=201 Identities=25% Similarity=0.322 Sum_probs=170.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCCC-C
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-H 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~-~ 913 (1419)
+.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK--PSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQ 97 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhceEEEEeChhhh
Confidence 469999999999999999999999999999999999876 468999999987532 234567999999863 2
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+..+||+|++.|....+ ....++..++++++++.++|. +..+..+ +.||||||||++||++|+.+|++|+|
T Consensus 98 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGq~qrl~laral~~~p~lLlL 169 (287)
T PRK13641 98 LFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSP-----FELSGGQMRRVAIAGVMAYEPEILCL 169 (287)
T ss_pred hccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33589999998865432 123344456788999999996 5666553 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 170 DEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 229 (287)
T PRK13641 170 DEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GKLIKHASP 229 (287)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999877999999999976 47788999999985 799999875
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=373.65 Aligned_cols=206 Identities=26% Similarity=0.392 Sum_probs=165.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++++... ++.++||+|++++|. .|
T Consensus 364 ~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~T 438 (588)
T PRK11174 364 TLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-GT 438 (588)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-cC
Confidence 5999999999999999999999999999999999999 65 8999999999987654 578999999998665 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
++|||.++.. ....+.+.++++. +. .+.. .-.|++..||.||+. ..
T Consensus 439 I~eNI~~g~~----~~~~eei~~al~~------------------a~---------l~~~--i~~lp~G~dT~vge~-G~ 484 (588)
T PRK11174 439 LRDNVLLGNP----DASDEQLQQALEN------------------AW---------VSEF--LPLLPQGLDTPIGDQ-AA 484 (588)
T ss_pred HHHHhhcCCC----CCCHHHHHHHHHH------------------hC---------HHHH--HHhcccccccccccC-CC
Confidence 9999988631 1111111111111 00 1111 224677889999976 45
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+||||||||++||||++++|+||+||||||+||+.++.+|.+.|+++.+ ++|+| .++|.. +..+.+|+|++|++|+
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvI-iItHrl-~~i~~aD~Iivl~~G~ 560 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTL-MVTHQL-EDLAQWDQIWVMQDGQ 560 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEE-EEecCh-HHHHhCCEEEEEeCCe
Confidence 7999999999999999999999999999999999999999999998743 34544 466665 4557799999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
++..|+++++.+
T Consensus 561 i~e~G~~~eL~~ 572 (588)
T PRK11174 561 IVQQGDYAELSQ 572 (588)
T ss_pred EeecCCHHHHHh
Confidence 999999998864
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-35 Score=325.63 Aligned_cols=195 Identities=27% Similarity=0.397 Sum_probs=164.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c---cc-ceEEEEccCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T---FA-RISGYCEQNDIHS 914 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~---~~-~~~gyv~Q~d~~~ 914 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... . ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN--PTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 569999999999999999999999999999999999866 4689999999875321 1 22 5699999999888
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
+.+|++|++.+....+. ....+..+.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 89999999988654331 122333456788999999987766543 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEE
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~ 1049 (1419)
||+|||+.++..+.+.|++++++ |+|||+++|+++ .+ +.+|++++|++ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 99999999999999999999764 899999999976 34 55799999985 6664
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=322.89 Aligned_cols=199 Identities=31% Similarity=0.413 Sum_probs=168.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHH
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+||+
T Consensus 14 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 14 TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 5999999999999999999999999999999999998775 9999999998754332 35799999999888899999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.++....+.. . .+....++.+++.+||++..+..++ .|
T Consensus 91 ~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 131 (213)
T cd03301 91 DNIAFGLKLRKVP--K--------------------------------DEIDERVREVAELLQIEHLLDRKPK-----QL 131 (213)
T ss_pred HHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHHhCChh-----hC
Confidence 9998764322100 0 0012246778899999877776654 59
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 387 (1419)
|||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|++|+++
T Consensus 132 S~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~ 210 (213)
T cd03301 132 SGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRL-GTTTIYVTHDQVEAMTMADRIAVMNDGQIQ 210 (213)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987533 456667889999999999999999999999
Q ss_pred EEc
Q 000562 388 YQG 390 (1419)
Q Consensus 388 ~~G 390 (1419)
+.|
T Consensus 211 ~~g 213 (213)
T cd03301 211 QIG 213 (213)
T ss_pred ecC
Confidence 876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=339.34 Aligned_cols=205 Identities=26% Similarity=0.379 Sum_probs=176.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
+.+|+|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999998876 999999998875422 2467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|.+...+... .+....++.+++.+||++..|+.++
T Consensus 92 v~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 132 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------------------------------QLLKQRVEEMIELVGLRPEQHKKIG----- 132 (301)
T ss_pred HHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCchh-----
Confidence 9999988655432110 0012246778999999988877665
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||+||+++|++++|||||+|||+.++.++.+.+++++. + ++|+.++|..+++.++||+|++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~-~tiii~sH~l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 133 QLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--D-KTIILSTHIMQEVEAICDRVIIINKGK 209 (301)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--C-CEEEEEcCCHHHHHHhCCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998853 3 667779999999999999999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=324.01 Aligned_cols=198 Identities=29% Similarity=0.448 Sum_probs=167.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCCH
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 226 (1419)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999998775 999999998875421 24679999999988888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.+.....+... .+....++++++.+||++..+..++ .
T Consensus 96 ~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 136 (218)
T cd03266 96 RENLEYFAGLYGLKG----------------------------------DELTARLEELADRLGMEELLDRRVG-----G 136 (218)
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHHHHhhhhh-----h
Confidence 999987543221100 0012246778999999877766554 5
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++... +.+++.++|+..++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRAL--GKCILFSTHIMQEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998642 45677788999999999999999999999
Q ss_pred EEEc
Q 000562 387 VYQG 390 (1419)
Q Consensus 387 v~~G 390 (1419)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=337.38 Aligned_cols=201 Identities=26% Similarity=0.361 Sum_probs=171.1
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC-----cccccceEEEEccCCC-CCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-----QETFARISGYCEQNDI-HSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~d~-~~~ 915 (1419)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.. ...+++.+||++|++. ...
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 469999999999999999999999999999999999876 46899999998763 1234567999999874 234
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
..||+|++.+..... ..+..+..+.++++++.++|.+..+... +.||||||||++||++|+.+|++|+||||
T Consensus 97 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrl~laraL~~~p~lLilDEP 168 (283)
T PRK13636 97 SASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEP 168 (283)
T ss_pred cccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 679999998864322 2233444567899999999988777653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 169 t~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 226 (283)
T PRK13636 169 TAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNP 226 (283)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999865 899999999976 46678999999986 799999986
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=347.54 Aligned_cols=203 Identities=24% Similarity=0.300 Sum_probs=174.9
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c----ccceEEEEccCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDI 912 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gyv~Q~d~ 912 (1419)
+...+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|++.
T Consensus 39 ~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~--p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 39 GLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE--PTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 44568999999999999999999999999999999999876 4689999999876421 1 2357999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++++||+||+.|....+. ...++..+.++++++.++|.+..+..+ +.||||||||++|||+|+.+|++|+|
T Consensus 117 l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~-----~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYP-----DELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999998765432 223444567889999999988777654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 999999999999999999999975 4899999999986 57788999999985 799998875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=339.56 Aligned_cols=204 Identities=23% Similarity=0.275 Sum_probs=172.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCC--C
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--I 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d--~ 912 (1419)
...+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++||+|++ .
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK--ATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 3579999999999999999999999999999999999876 458999999987642 12456799999997 5
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
++|.+||.|++.+......+ ..+.++.++.+.++++.++|. +..+.. +..||||||||++||+||+.+|++|+
T Consensus 111 l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~~LSgG~~QRv~iArAL~~~P~lli 184 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PHEFSGGQCQRIGIARALILEPKLII 184 (331)
T ss_pred cCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 78899999999886543221 234455566788999999994 344443 45899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+||||+|||..++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+ |+++..|+.
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~-G~ive~g~~ 246 (331)
T PRK15079 185 CDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYL-GHAVELGTY 246 (331)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 99999999999999999999999765 899999999976 46678999999985 799999985
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=330.06 Aligned_cols=201 Identities=21% Similarity=0.319 Sum_probs=168.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
.+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 3569999999999999999999999999999999999866 4689999999875431 235679999999988899
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHc-CCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+||+||+.+..... ......+.++++++.+ ++.+..+.. +..||||||||++||++|+.+|+|++||||
T Consensus 95 ~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 95 MTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred CcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 99999998764221 1122234466777777 466555443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+..
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 222 (237)
T PRK11614 165 SLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVLEDTGD 222 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEeeCCHH
Confidence 9999999999999999999877999999999976 57788999999985 7999999853
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=338.69 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=176.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCC--
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQD-- 218 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 218 (1419)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 469999999999999999999999999999999999997642348999999998865432 24799999997
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccc
Q 000562 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1419)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1419)
.+.+.+||.+++.+......... . .+...++.++++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~---------~------------------------~~~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMS---------K------------------------AEAFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCC---------H------------------------HHHHHHHHHHHHHcCCCChHHH-
Confidence 67889999999976543221000 0 0112246778899999764332
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.....|||||||||+||+||+.+|++|++||||+|||..++.+|.+.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEECCHHHHHHhCCEE
Confidence 2 35667899999999999999999999999999999999999999999999987643 567778999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 233 ~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998875
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-35 Score=337.93 Aligned_cols=200 Identities=22% Similarity=0.346 Sum_probs=169.4
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCC--C
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d--~ 912 (1419)
+.+|+|||++|++||++||+|+||||||||+++|+|..+ +..|+|.++|.++.. ..+++.+|||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 97 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK--PTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQ 97 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECccccccchHHHHHhheEEEecChHhc
Confidence 469999999999999999999999999999999999876 468999999987632 23566899999986 3
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
+++ .||+|++.|..... .....+..++++++++.+||. +..++. +..||||||||++||++|+.+|+||+
T Consensus 98 l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~~LSgGq~qrv~laraL~~~p~ill 168 (286)
T PRK13646 98 LFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----PFQMSGGQMRKIAIVSILAMNPDIIV 168 (286)
T ss_pred cch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHhCCCEEE
Confidence 444 59999999875432 223344556788999999996 565554 35799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 169 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 230 (286)
T PRK13646 169 LDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE-GSIVSQTSP 230 (286)
T ss_pred EECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999975 4899999999976 46788999999985 799999985
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=337.29 Aligned_cols=200 Identities=27% Similarity=0.368 Sum_probs=169.8
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCCC-CC
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDI-HS 914 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~-~~ 914 (1419)
.+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++. .+
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l 97 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ--PTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL 97 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc
Confidence 59999999999999999999999999999999999876 468999999987631 234667999999862 33
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
...||.|++.|+.... ..+..+.++++.++++.++|. +..+.. +..||||||||++||++|+.+|++|+||
T Consensus 98 ~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~~LSgGqkqrvaiA~aL~~~p~illLD 169 (288)
T PRK13643 98 FEETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----PFELSGGQMRRVAIAGILAMEPEVLVLD 169 (288)
T ss_pred ccchHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----cccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3469999999875432 223445566788999999995 455543 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G~i~~~g~~ 228 (288)
T PRK13643 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-GHIISCGTP 228 (288)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999986 46688999999985 899999986
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=340.80 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=177.2
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.++|+++.++.. ......+|+|||++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~--------~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEK--------QENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 36677776665310 0012459999999999999999999999999999999999876 4689999999765
Q ss_pred Cc-------------------ccccceEEEEccCC--CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc
Q 000562 896 RQ-------------------ETFARISGYCEQND--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954 (1419)
Q Consensus 896 ~~-------------------~~~~~~~gyv~Q~d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~ 954 (1419)
.. ...++.+|||+|++ .+++ .||+||+.|+.... ....++..++++++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23457899999986 3444 59999998875322 223344456788999999996
Q ss_pred -cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHH
Q 000562 955 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033 (1419)
Q Consensus 955 -~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~ 1033 (1419)
+..+.. +..||||||||++|||+|+.+|+||+|||||+|||+.++..+++.|+++.++|+|||+++|+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455543 3579999999999999999999999999999999999999999999999877999999999976 466
Q ss_pred HhcCeEEEEecCCEEEEeCCC
Q 000562 1034 ESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1034 ~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+.+|++++|++ |+++..|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 799999985
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=345.38 Aligned_cols=206 Identities=20% Similarity=0.279 Sum_probs=175.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
..+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+
T Consensus 41 ~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 41 SLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred eEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 46899999999999999999999999999999999999876 9999999998865432 2479999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++++||+||+.|+....+... . +....++++++.+||++..++.+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~----------~------------------------~~~~~~~e~L~~~gL~~~~~~~~- 162 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINA----------E------------------------ERREKALDALRQVGLENYAHSYP- 162 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCChhhhcCc-
Confidence 999999999998754332110 0 01124677899999987776655
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+.|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +++|+.++|+.+++.+++|+|++
T Consensus 163 ----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~-g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 163 ----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKH-QRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHC-CCeEEEEECCHHHHHHhCCEEEE
Confidence 4699999999999999999999999999999999999999999999986543 45667789999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|+++..|+++++.
T Consensus 238 L~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 238 MQNGEVVQVGTPDEIL 253 (400)
T ss_pred EECCEEEecCCHHHHH
Confidence 9999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=329.28 Aligned_cols=208 Identities=21% Similarity=0.277 Sum_probs=168.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---cc-cceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TF-ARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~-~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.... .. +..++|++|++.+++.
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (243)
T TIGR01978 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPG 91 (243)
T ss_pred CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCC
Confidence 4579999999999999999999999999999999999841114689999999875431 22 2348999999999999
Q ss_pred ccHHHHHHHHhhhcCCC----CCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 917 LTVLESLLFSAWLRLPS----EIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~----~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
+|++|++.+........ .....+..+.++++++.+++. +..+..++ ..||||||||++||++|+.+|++++
T Consensus 92 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~lll 167 (243)
T TIGR01978 92 VSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAI 167 (243)
T ss_pred cCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998764322110 112223345678899999997 34454321 2499999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-cCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|++++++|+|||+++|+++ .+... +|++++|++ |++++.|+.
T Consensus 168 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~-G~i~~~g~~ 229 (243)
T TIGR01978 168 LDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLD-GRIVKSGDV 229 (243)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeC-CEEEEecCH
Confidence 99999999999999999999999877999999999986 45555 799999985 799998875
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=325.15 Aligned_cols=203 Identities=29% Similarity=0.415 Sum_probs=171.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999998775 999999998875321 2456999999998888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.+.....+... . +....++++++.+||++..++.++
T Consensus 92 v~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~----- 132 (220)
T cd03263 92 VREHLRFYARLKGLPK----------S------------------------EIKEEVELLLRVLGLTDKANKRAR----- 132 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCHHHHhChhh-----
Confidence 9999987644322100 0 011235678889999877776654
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++++ + ++++.++|+..++.+++|++++|++|+
T Consensus 133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--G-RSIILTTHSMDEAEALCDRIAIMSDGK 209 (220)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--C-CEEEEEcCCHHHHHHhcCEEEEEECCE
Confidence 5999999999999999999999999999999999999999999998864 3 667778899999999999999999999
Q ss_pred EEEEcChhhH
Q 000562 386 IVYQGPRVSV 395 (1419)
Q Consensus 386 iv~~G~~~~~ 395 (1419)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999987654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=337.10 Aligned_cols=216 Identities=22% Similarity=0.387 Sum_probs=173.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-------------------CCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------------------VPP 208 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------------------~~~ 208 (1419)
.++|+|||++|++|++++|+||||||||||+++|+|.+++. +|+|+++|+++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 35999999999999999999999999999999999999876 99999999887542 114
Q ss_pred ceEEEEccCC--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHH
Q 000562 209 RTSAYVSQQD--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIM 286 (1419)
Q Consensus 209 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l 286 (1419)
+.++||+|++ .++ ..||+||+.|+....+.. . .+...++++++
T Consensus 116 ~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~-~---------------------------------~~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVK-K---------------------------------SEAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhccc-cchHHHHHHhhHHhcCCC-H---------------------------------HHHHHHHHHHH
Confidence 6799999986 445 469999998864321110 0 00122466788
Q ss_pred HHhCCc-ccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEe
Q 000562 287 KILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1419)
Q Consensus 287 ~~lgL~-~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~ 365 (1419)
+.+||+ +..++ .+..|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++... +++|++++
T Consensus 161 ~~~gL~~~~~~~-----~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~--g~Tiiivt 233 (320)
T PRK13631 161 NKMGLDDSYLER-----SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKAN--NKTVFVIT 233 (320)
T ss_pred HHcCCChhHhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEe
Confidence 999996 34443 34579999999999999999999999999999999999999999999988642 56677789
Q ss_pred cChhHHHhhcCeEEEEcCCeEEEEcChhhHH---HHHHhCCCCCCC
Q 000562 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVL---DFFASMGFSCPK 408 (1419)
Q Consensus 366 q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~---~~F~~~G~~~p~ 408 (1419)
|+..++...+|+|++|++|++++.|+++++. ..++..|..+|.
T Consensus 234 Hd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 234 HTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred cCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 9999999999999999999999999998764 233445555443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-35 Score=330.88 Aligned_cols=203 Identities=25% Similarity=0.332 Sum_probs=172.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----------------ccccceE
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETFARIS 904 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----------------~~~~~~~ 904 (1419)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 12 ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP--IDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 3569999999999999999999999999999999999876 468999999986532 1245679
Q ss_pred EEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHh
Q 000562 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV 984 (1419)
Q Consensus 905 gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~ 984 (1419)
+|++|++.+++..|+.||+.+...... ........+.++++++.+++.+..+.. +..||||||||++||++|+
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~ 162 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALA 162 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHH
Confidence 999999999999999999987542111 122334455678999999998776654 3579999999999999999
Q ss_pred hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 985 ~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
.+|++++|||||+|||+.++..+.+.|++++++ |.|||+++|++. ++...+|++++|++ |+++..|+.
T Consensus 163 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999765 899999999986 46678999999985 799998874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-34 Score=319.71 Aligned_cols=193 Identities=25% Similarity=0.319 Sum_probs=144.5
Q ss_pred eeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHHHHHhh
Q 000562 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1419)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~ 928 (1419)
.+.|..||+++++||||-||||+.++|||..+ +.+|+ .. .-.++|-||--.-....||++.|.-...
T Consensus 361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik--Pdeg~----~~-------~~~vSyKPQyI~~~~~gtV~~~l~~~~~ 427 (591)
T COG1245 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK--PDEGS----EE-------DLKVSYKPQYISPDYDGTVEDLLRSAIR 427 (591)
T ss_pred CCeeecceEEEEECCCCcchHHHHHHHhcccc--CCCCC----Cc-------cceEeecceeecCCCCCcHHHHHHHhhh
Confidence 46788999999999999999999999999766 34565 11 1246888886444467899998864332
Q ss_pred hcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHH
Q 000562 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008 (1419)
Q Consensus 929 lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~ 1008 (1419)
-+... .-...|+++-|.|..+.+..+ .+|||||.|||+||.+|..++++.+||||++.||.+.+..+-
T Consensus 428 ~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~va 495 (591)
T COG1245 428 SAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVA 495 (591)
T ss_pred hhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHH
Confidence 21111 123467888899998888765 479999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEe----CCCCCchhHHHHHHHhcCCC
Q 000562 1009 RTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA----GPLGSKSCELIKYFEAVEGV 1071 (1419)
Q Consensus 1009 ~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~----G~~~~~~~~~~~~f~~~~g~ 1071 (1419)
+.||+.... ++|.+++-||.-+ +--..||++|.. |+---+ +|. ...+.+-.|...+ |+
T Consensus 496 kvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~--GePg~~g~a~~P~-~mr~GMN~FLk~l-~v 558 (591)
T COG1245 496 KVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE--GEPGKHGHASPPM-SMREGMNRFLKNL-GV 558 (591)
T ss_pred HHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe--cCCCccCcCCCCc-cHHHHHHHHHHHc-Cc
Confidence 999999854 7899999999753 334579998886 332222 232 2233455566666 44
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=329.37 Aligned_cols=202 Identities=26% Similarity=0.355 Sum_probs=170.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC---------cccccceEEEEccCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---------QETFARISGYCEQND 911 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---------~~~~~~~~gyv~Q~d 911 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. ....++.++|++|++
T Consensus 14 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 14 AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 3569999999999999999999999999999999999876 46899999998642 112355789999999
Q ss_pred CCCCCccHHHHHHHH-hhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 912 IHSPGLTVLESLLFS-AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 912 ~~~~~lTv~E~l~f~-a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
.+++.+|++|++.+. ...+ .....+..+.+.+.++.+|+.+..+..+ ..||||||||++|||+|+.+|+++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~ll 163 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----LHLSGGQQQRVAIARALMMEPQVL 163 (242)
T ss_pred cccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999753 2222 1122333456788999999987766653 479999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||||+|||+.++..+.+.|+++.++|+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 225 (242)
T PRK11124 164 LFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-GHIVEQGDA 225 (242)
T ss_pred EEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999877999999999986 46678999999985 799999875
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=332.04 Aligned_cols=213 Identities=28% Similarity=0.485 Sum_probs=177.8
Q ss_pred ccceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECC
Q 000562 813 QPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892 (1419)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g 892 (1419)
.++.+..+|+++..+ +++++++|+|++++||+.+||+|+||||||||+++|+|..+ +.+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~--~~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA--PTQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC--CCCceEEECC
Confidence 355666667766653 23379999999999999999999999999999999999877 4689999999
Q ss_pred ccCC---cccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccC------CcccC
Q 000562 893 YPKR---QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG------ALIGL 963 (1419)
Q Consensus 893 ~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~------~~~g~ 963 (1419)
.+.. ...+++.++||+|++.+++. |++||+.++. + +.+ ++.+.++++..++.+..+ +.+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~----~-~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLAR----P-DAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccC----C-cCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 8754 46788999999999988765 9999998752 2 222 234677888888766544 44554
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe
Q 000562 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1419)
Q Consensus 964 ~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1043 (1419)
+.++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 3568999999999999999999999999999999999999999999999986 599999999964 567889999998
Q ss_pred cCCEEEEeCCC
Q 000562 1044 RGGELIYAGPL 1054 (1419)
Q Consensus 1044 ~gG~~~~~G~~ 1054 (1419)
+ |+++..|..
T Consensus 529 ~-G~l~~~g~~ 538 (559)
T COG4988 529 N-GRLVEQGTH 538 (559)
T ss_pred C-CceeccCCH
Confidence 5 799999975
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=336.35 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=169.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC----------------------
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---------------------- 205 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~---------------------- 205 (1419)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35999999999999999999999999999999999999876 89999998754210
Q ss_pred -----CCCceEEEEccCC-CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchh
Q 000562 206 -----VPPRTSAYVSQQD-WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTS 279 (1419)
Q Consensus 206 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~ 279 (1419)
..++.++||+|++ ..+...||+|||.|+....+... .+..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~----------------------------------~~~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSK----------------------------------EEAK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCH----------------------------------HHHH
Confidence 1135799999985 34556899999998654322100 0112
Q ss_pred HHHHHHHHHhCCc-ccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCC
Q 000562 280 LVVEYIMKILGLD-TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358 (1419)
Q Consensus 280 ~~~~~~l~~lgL~-~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~ 358 (1419)
.+++.+++.+||+ +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ . +
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~-g 215 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-Q-G 215 (305)
T ss_pred HHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-C-C
Confidence 2467889999996 5555544 46999999999999999999999999999999999999999999999874 2 5
Q ss_pred eEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHH
Q 000562 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 359 t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1419)
++|+.++|+.+++.+.+|+|++|++|++++.|+++++.
T Consensus 216 ~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 216 KTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred CEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 66777999999999999999999999999999998864
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=335.16 Aligned_cols=200 Identities=25% Similarity=0.335 Sum_probs=170.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCCC-CCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 916 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~-~~~~ 916 (1419)
+.+|+|||++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 459999999999999999999999999999999999866 468999999987642 234567999999975 3567
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
.|++||+.|..... .....+..+.++++++.+++.+..+..+ ..||+|||||++||++|+.+|+||+|||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998865432 1233444566889999999988777653 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++|+|||+++|+++ ++ +.+|++++|++ |++++.|+.
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 219 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEP 219 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999877999999999986 34 67999999985 799999985
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=329.72 Aligned_cols=205 Identities=25% Similarity=0.307 Sum_probs=169.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc---ccccceEEEEccCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~ 914 (1419)
+..+|+|+|+++++||+++|+||||||||||+++|+|..+.. +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 15 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 356999999999999999999999999999999999986421 358999999987542 23456799999999888
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc----cCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL----SGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~----~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
+.+||+||+.+....+.. .....+..+.++++++.+++.+. .+.. +..||||||||++|||+|+.+|+++
T Consensus 95 ~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~ll 168 (250)
T PRK14247 95 PNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----AGKLSGGQQQRLCIARALAFQPEVL 168 (250)
T ss_pred CCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 899999999886543211 11223344567889999998542 2332 4579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||||+|||+.++..+.+.|+++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 169 lLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14247 169 LADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-GQIVEWGPT 229 (250)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-CeEEEECCH
Confidence 99999999999999999999999864 899999999986 46678999999985 799998875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=328.63 Aligned_cols=204 Identities=24% Similarity=0.335 Sum_probs=170.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||+++|+|+|||||||||++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 14 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 14 GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR--PDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 3579999999999999999999999999999999999865 4689999999875421 123469999999999999
Q ss_pred ccHHHHHHHHhhhcCC--C---CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 917 LTVLESLLFSAWLRLP--S---EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~--~---~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
+||+||+.+....... . ....+..++.++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+
T Consensus 92 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~ll 166 (242)
T TIGR03411 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLL 166 (242)
T ss_pred CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999886432100 0 0112234456889999999987766554 4799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 167 lDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 167 LDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred ecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 9999999999999999999999876 799999999976 46678999999985 789988875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=326.41 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=168.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCc-----CCCCCeeeEEEECCccCCCCC-----CCceEEEEccCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-----GHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQD 218 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d 218 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+ ++. +|+|.++|+++.... .++.++|++|++
T Consensus 14 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 5999999999999999999999999999999999998 554 999999999875432 245799999998
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccc
Q 000562 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1419)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1419)
.++ .+||+||+.++....+... + . +....++++++.+||.+..+..
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~~~--~-------~------------------------~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGIKL--K-------E------------------------ELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCCCc--H-------H------------------------HHHHHHHHHHHHcCCChHHhcc
Confidence 877 8999999988654321100 0 0 0122356788999998766554
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+. +..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.+++.+++|++
T Consensus 137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i 210 (227)
T cd03260 137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--E-YTIVIVTHNMQQAARVADRT 210 (227)
T ss_pred CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh--C-cEEEEEeccHHHHHHhCCEE
Confidence 31 357999999999999999999999999999999999999999999999865 2 66777889999999999999
Q ss_pred EEEcCCeEEEEcChhh
Q 000562 379 ILLSEGQIVYQGPRVS 394 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~ 394 (1419)
++|++|++++.|++++
T Consensus 211 ~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 211 AFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEeCCEEEEecCccc
Confidence 9999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=331.84 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=170.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+|+|+|+++++|++++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 14 GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 4569999999999999999999999999999999999865 468999999986532 23446799999998887889
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHh------hCCCcce
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVF 991 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~------~~p~ill 991 (1419)
||+|++.+...... ...+..++.++++++.+++.+..+..+ ..||||||||++||++|+ .+|++|+
T Consensus 92 tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 92 TVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 99999987543211 112233456788999999987776654 479999999999999999 5999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|++++ ++|+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 225 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-GRLVADGTP 225 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-CEEEeeCCH
Confidence 999999999999999999999997 67899999999976 46678999999985 799988875
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=321.87 Aligned_cols=198 Identities=25% Similarity=0.373 Sum_probs=167.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
+.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 35999999999999999999999999999999999998775 9999999987654 2356799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.+.....+... .+....++++++.+||++..++.++ .|
T Consensus 89 e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 129 (210)
T cd03269 89 DQLVYLAQLKGLKK----------------------------------EEARRRIDEWLERLELSEYANKRVE-----EL 129 (210)
T ss_pred HHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCChHHHhCcHh-----hC
Confidence 99987543321100 0012236778899999877776554 69
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 387 (1419)
||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++. +.+|+.++|+..++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA--GKTVILSTHQMELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEECCCHHHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999988653 456777889999999999999999999998
Q ss_pred EEc
Q 000562 388 YQG 390 (1419)
Q Consensus 388 ~~G 390 (1419)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=317.09 Aligned_cols=183 Identities=46% Similarity=0.768 Sum_probs=155.8
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC--CCCceEEEEccCCCCCCC
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~ 223 (1419)
.++.+|+|+|+.+++||+++|+||||||||||+++|+|.+++..+.+|+|.++|+++... ..++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 345799999999999999999999999999999999999874324599999999987653 234679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++.+.. . +..
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------~-----~~~ 115 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------G-----NEF 115 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------c-----ccc
Confidence 99999998743210 1 123
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
...||||||||++||+||+.+|++++|||||+|||+.++..+.+.++++++..+.+++++++|+.+++.+.+|++++|++
T Consensus 116 ~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 116 VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred hhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 34699999999999999999999999999999999999999999999987643456677777778899999999999999
Q ss_pred CeEEEEc
Q 000562 384 GQIVYQG 390 (1419)
Q Consensus 384 G~iv~~G 390 (1419)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=323.78 Aligned_cols=202 Identities=26% Similarity=0.409 Sum_probs=168.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 36999999999999999999999999999999999999775 9999999988765432 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHh-CCcccccccccCc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~ 302 (1419)
+|++||+.++..... . . +....++.+++.+ ++++..++.+
T Consensus 90 ~t~~~~l~~~~~~~~--~--~--------------------------------~~~~~~~~~l~~~~~l~~~~~~~~--- 130 (222)
T cd03224 90 LTVEENLLLGAYARR--R--A--------------------------------KRKARLERVYELFPRLKERRKQLA--- 130 (222)
T ss_pred CcHHHHHHHHhhhcC--c--h--------------------------------hHHHHHHHHHHHHHhhhhhhhCch---
Confidence 999999988643221 0 0 0011234556666 4666556554
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|++++. .+++|+.++|+..++.+++|+|++|+
T Consensus 131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tiii~sH~~~~~~~~~d~i~~l~ 206 (222)
T cd03224 131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD--EGVTILLVEQNARFALEIADRAYVLE 206 (222)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCHHHHHHhccEEEEee
Confidence 46999999999999999999999999999999999999999999999865 35667778899999999999999999
Q ss_pred CCeEEEEcChhhH
Q 000562 383 EGQIVYQGPRVSV 395 (1419)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1419)
+|++++.|+.+++
T Consensus 207 ~G~i~~~~~~~~~ 219 (222)
T cd03224 207 RGRVVLEGTAAEL 219 (222)
T ss_pred CCeEEEeCCHHHH
Confidence 9999999988765
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=336.03 Aligned_cols=200 Identities=25% Similarity=0.328 Sum_probs=171.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
+.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE--AESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccc
Confidence 359999999999999999999999999999999999876 468999999987642 234567999999973 66788
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+||+.|..... ....++..+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~ 169 (279)
T PRK13650 98 TVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169 (279)
T ss_pred cHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 9999999875432 2334445567899999999988777654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|.+ |+++..|+.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~-G~i~~~g~~ 224 (279)
T PRK13650 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN-GQVESTSTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999875 999999999976 34 67999999985 799999885
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=342.99 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=176.4
Q ss_pred ccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCcc----CCc---cc---c-cceEEEE
Q 000562 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP----KRQ---ET---F-ARISGYC 907 (1419)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~----~~~---~~---~-~~~~gyv 907 (1419)
++...+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+ ... .. . ++.++|+
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 456779999999999999999999999999999999999876 568999999962 211 11 1 2579999
Q ss_pred ccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000562 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1419)
Q Consensus 908 ~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p 987 (1419)
+|++.++|.+||+||+.|+...+. ....+.++.++++++.+||.+..+... ..||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999998865432 234455667899999999988877654 479999999999999999999
Q ss_pred CcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 988 SIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 988 ~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+||+|||||+|||+.++..+++.|+++.++ |+|||++|||++ ++.+.+|++++|++ |+++..|+..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999999765 899999999986 57788999999985 7999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=333.47 Aligned_cols=206 Identities=21% Similarity=0.290 Sum_probs=170.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-------CCceEEEEccCC-C
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQD-W 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-~ 219 (1419)
+++|+|||++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++||+|++ .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 35999999999999999999999999999999999999876 999999999875421 245799999985 2
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
.+...||.||+.|+....+.. . .+....++++++.+||. +..++.
T Consensus 97 ~l~~~tv~e~i~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (286)
T PRK13646 97 QLFEDTVEREIIFGPKNFKMN----------L------------------------DEVKNYAHRLLMDLGFSRDVMSQS 142 (286)
T ss_pred ccchhhHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 333469999998864321110 0 00122467789999996 555554
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.|||||||||+|||||+.+|++++|||||+|||+.++.++.+.++++... .+++|+.++|+.+++.+++|+|
T Consensus 143 ~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~-~g~tvl~vtH~~~~~~~~~dri 216 (286)
T PRK13646 143 P-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTD-ENKTIILVSHDMNEVARYADEV 216 (286)
T ss_pred c-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHh-CCCEEEEEecCHHHHHHhCCEE
Confidence 4 569999999999999999999999999999999999999999999998653 3567777999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999988764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=322.62 Aligned_cols=194 Identities=27% Similarity=0.371 Sum_probs=163.9
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccHHHHHHH
Q 000562 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1419)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 925 (1419)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+|++||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999876 468999999987543 1234679999999998899999999987
Q ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 000562 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1419)
Q Consensus 926 ~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~ 1005 (1419)
....+.. . .+..++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+|||+.++.
T Consensus 94 ~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred ccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 5432211 1 1233456789999999987776653 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1006 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
.+++.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999999754 899999999976 46678999999985 7887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=327.42 Aligned_cols=213 Identities=27% Similarity=0.395 Sum_probs=172.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
.++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 36999999999999999999999999999999999998765 899999999876543 135799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.++..... .... . ..+..+ ......++.+++.+||++..++.+
T Consensus 91 ~~~tv~~~l~~~~~~~~--~~~~---~------~~~~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~-- 142 (241)
T cd03256 91 ERLSVLENVLSGRLGRR--STWR---S------LFGLFP---------------KEEKQRALAALERVGLLDKAYQRA-- 142 (241)
T ss_pred ccCcHHHHHHhhhcccc--hhhh---h------hcccCc---------------HHHHHHHHHHHHHcCChhhhCCCc--
Confidence 99999999987532110 0000 0 000000 001234667889999987666544
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|
T Consensus 143 ---~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~~~~d~v~~l 218 (241)
T cd03256 143 ---DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE-GITVIVSLHQVDLAREYADRIVGL 218 (241)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999987533 456777889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 000562 382 SEGQIVYQGPRVSV 395 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1419)
++|++++.|+++++
T Consensus 219 ~~G~i~~~~~~~~~ 232 (241)
T cd03256 219 KDGRIVFDGPPAEL 232 (241)
T ss_pred ECCEEEeecCHHHh
Confidence 99999999998775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=341.76 Aligned_cols=207 Identities=23% Similarity=0.289 Sum_probs=175.7
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCc----cCCCCCC-------CceEEEEc
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH----GFKEFVP-------PRTSAYVS 215 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv~ 215 (1419)
...+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|. ++..... ++.++||+
T Consensus 36 ~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vf 112 (382)
T TIGR03415 36 LVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVF 112 (382)
T ss_pred CEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEEE
Confidence 457999999999999999999999999999999999999876 999999996 3332211 24799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccc
Q 000562 216 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1419)
Q Consensus 216 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1419)
|++.+++.+||+||+.|+....+... .+.+..++++++.+||++..
T Consensus 113 Q~~~l~p~~Tv~eNi~~~~~~~g~~~----------------------------------~~~~~~a~e~le~vgL~~~~ 158 (382)
T TIGR03415 113 QKFALMPWLTVEENVAFGLEMQGMPE----------------------------------AERRKRVDEQLELVGLAQWA 158 (382)
T ss_pred CCCcCCCCCcHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchhh
Confidence 99999999999999998754332110 00122467789999998877
Q ss_pred cccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 000562 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1419)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 375 (1419)
|+.++ .|||||||||+|||||+.+|+||+|||||+|||+.++.++.+.|+++.+.. +++|+.++|+..++.+++
T Consensus 159 ~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-~~TII~iTHdl~e~~~l~ 232 (382)
T TIGR03415 159 DKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKL-NKTIIFVSHDLDEALKIG 232 (382)
T ss_pred cCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhC
Confidence 76654 599999999999999999999999999999999999999999999987643 456677999999999999
Q ss_pred CeEEEEcCCeEEEEcChhhHH
Q 000562 376 DDVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 376 D~vilL~~G~iv~~G~~~~~~ 396 (1419)
|+|++|++|+++..|+++++.
T Consensus 233 DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 233 NRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CEEEEEECCEEEEecCHHHHh
Confidence 999999999999999998874
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-35 Score=318.97 Aligned_cols=222 Identities=23% Similarity=0.333 Sum_probs=194.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
..-++|+|+.++.||+..|||=||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+-.+
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaL 117 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFAL 117 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcc
Confidence 45789999999999999999999999999999999999876 9999999998876543 3689999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
+|+.||.||..|+.+.+|.+.. +.+.+..+.|+..||+...|..+
T Consensus 118 lPhrtVl~Nv~fGLev~Gv~~~----------------------------------er~~~a~~~l~~VgL~~~~~~yp- 162 (386)
T COG4175 118 LPHRTVLENVAFGLEVQGVPKA----------------------------------EREERALEALELVGLEGYADKYP- 162 (386)
T ss_pred ccchhHhhhhhcceeecCCCHH----------------------------------HHHHHHHHHHHHcCchhhhhcCc-
Confidence 9999999999999998876521 12335678899999999888665
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
..||||+||||.|||||..+|+||+||||+|+|||--+.++.+.|.++...++ +||+.++|+.+|++.+.|||.+
T Consensus 163 ----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~-KTIvFitHDLdEAlriG~rIai 237 (386)
T COG4175 163 ----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK-KTIVFITHDLDEALRIGDRIAI 237 (386)
T ss_pred ----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhC-CeEEEEecCHHHHHhccceEEE
Confidence 46999999999999999999999999999999999999999999999887765 4566799999999999999999
Q ss_pred EcCCeEEEEcChhhHHHHHHhCCCCCCCCCChHHHHHHhc
Q 000562 381 LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~~~F~~~G~~~p~~~~~adfl~~v~ 420 (1419)
|.+|+|+..|+++|++. .|.+.-+++|..++.
T Consensus 238 mkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v~ 269 (386)
T COG4175 238 MKDGEIVQVGTPEEILL--------NPANDYVRDFVRNVD 269 (386)
T ss_pred ecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcCC
Confidence 99999999999999974 466656677776553
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=329.86 Aligned_cols=209 Identities=25% Similarity=0.266 Sum_probs=169.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCC-----cccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR-----QETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.++. ...+++.++|++|++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 16 SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 346999999999999999999999999999999999986532 35899999998763 1234567999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++.+||+||+.+....+.. ....+...+.++++++.+++........ ...+..||||||||++||++|+.+|++++|
T Consensus 96 ~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 96 PFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRL-NDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred cCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhh-ccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999999999886543311 1122333456788899988853211111 112457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 174 DEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (253)
T PRK14267 174 DEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLYL-GKLIEVGPT 232 (253)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999865 799999999986 46778999999985 799999885
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.18 Aligned_cols=198 Identities=26% Similarity=0.354 Sum_probs=166.5
Q ss_pred eeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHHHHH
Q 000562 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1419)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~ 924 (1419)
|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... ...+|++|++.+++.+||+|++.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999876 46899999998764321 12489999999999999999998
Q ss_pred HHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHH
Q 000562 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1419)
Q Consensus 925 f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~ 1004 (1419)
+......+ .....+.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 76321111 2223344556788999999987766653 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1005 AIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1005 ~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998765 899999999986 57788999999985 788888764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.94 Aligned_cols=200 Identities=28% Similarity=0.349 Sum_probs=167.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 12 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 12 QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 4579999999999999999999999999999999999876 4689999999875421 124579999999999999
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcC-CccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~-l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+|++|++.+....+.. . ..+..+++++.++ +.+..+.. ++.||||||||++||++|+.+|++++||||
T Consensus 90 ~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 90 LTVEENLLTGLAALPR---R---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred CcHHHHHHHHHHhcCc---c---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999886543211 1 1233567777776 45555544 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|+..
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999998864 899999999976 46668999999985 7999999864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=326.23 Aligned_cols=206 Identities=28% Similarity=0.393 Sum_probs=171.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
..+|+|+|+.+++|++++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 35999999999999999999999999999999999998775 8999999988754332 35789999999989899
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc--cccccccCc
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT--CADTLVGDE 302 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~--~~dt~vg~~ 302 (1419)
||+||+.++....+... .+....++++++.+||++ ..++.
T Consensus 91 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~l~l~~~~~~~~~---- 132 (242)
T cd03295 91 TVEENIALVPKLLKWPK----------------------------------EKIRERADELLALVGLDPAEFADRY---- 132 (242)
T ss_pred cHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCCcHHHHhcC----
Confidence 99999987643221100 001223567889999985 44544
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|+|++|+
T Consensus 133 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tvii~sH~~~~~~~~~d~i~~l~ 210 (242)
T cd03295 133 -PHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQE-LGKTIVFVTHDIDEAFRLADRIAIMK 210 (242)
T ss_pred -hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999998753 24667778899999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999887653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=331.09 Aligned_cols=203 Identities=28% Similarity=0.305 Sum_probs=170.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCC-CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++..
T Consensus 19 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 95 (274)
T PRK13647 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS 95 (274)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccC
Confidence 5999999999999999999999999999999999999775 9999999998764332 357999999963 45678
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.|+....+... .+.+..++.+++.+||.+..++.+.
T Consensus 96 tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~~---- 137 (274)
T PRK13647 96 TVWDDVAFGPVNMGLDK----------------------------------DEVERRVEEALKAVRMWDFRDKPPY---- 137 (274)
T ss_pred cHHHHHHhhHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCHHHhcCChh----
Confidence 99999988643211100 0012246778999999877776654
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|++++.. +++|+.++|+.+++.+.+|+|++|++|
T Consensus 138 -~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--g~tili~tH~~~~~~~~~d~i~~l~~G 214 (274)
T PRK13647 138 -HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ--GKTVIVATHDVDLAAEWADQVIVLKEG 214 (274)
T ss_pred -hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998753 566777899999999999999999999
Q ss_pred eEEEEcChhhH
Q 000562 385 QIVYQGPRVSV 395 (1419)
Q Consensus 385 ~iv~~G~~~~~ 395 (1419)
++++.|+++++
T Consensus 215 ~i~~~g~~~~~ 225 (274)
T PRK13647 215 RVLAEGDKSLL 225 (274)
T ss_pred EEEEECCHHHh
Confidence 99999998654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=329.77 Aligned_cols=202 Identities=27% Similarity=0.320 Sum_probs=167.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|++|++||++||+|+||||||||+++|+|..+. .+.+|+|.++|.+... ..+++.++|++|++.
T Consensus 24 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 24 EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 35699999999999999999999999999999999997652 1358999999987532 134567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++ +|++||+.+....+ ....++.++.++++++.+++.+ ..+.. +..||||||||++|||+|+.+|+
T Consensus 104 ~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~ 174 (258)
T PRK14268 104 PFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP-----ALSLSGGQQQRLCIARTLAVKPK 174 (258)
T ss_pred cCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----hhhCCHHHHHHHHHHHHHHcCCC
Confidence 877 89999999875432 1223334456788999998843 23332 45799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+++|||||+|||+.++..+.+.|+++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 175 llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 237 (258)
T PRK14268 175 IILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFLM-GELIEFGQT 237 (258)
T ss_pred EEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999864 899999999976 46678999999985 799999875
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=335.00 Aligned_cols=213 Identities=19% Similarity=0.230 Sum_probs=173.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC-CeeeEEEECCccCCCCCC-------CceEEEEccCC-
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-------PRTSAYVSQQD- 218 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 218 (1419)
.++|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|.++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999986422 358999999998765432 13699999997
Q ss_pred -CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccc
Q 000562 219 -WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1419)
Q Consensus 219 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1419)
.+.+.+||.+++........... ..+....++++++.+||++..+
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~---------------------------------~~~~~~~~~~~L~~~gL~~~~~- 145 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGN---------------------------------KKTRRQRAIDLLNQVGIPDPAS- 145 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCC---------------------------------HHHHHHHHHHHHHHCCCCChHH-
Confidence 47888999999876443210000 0011234678899999975211
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
+-+.....|||||||||+||+||+.+|++|++||||+|||..++.++++.|+++.+.. +.+++.++|+...+.+++|+
T Consensus 146 -~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~-g~til~iTHdl~~~~~~adr 223 (326)
T PRK11022 146 -RLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKE-NMALVLITHDLALVAEAAHK 223 (326)
T ss_pred -HHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCE
Confidence 1123456799999999999999999999999999999999999999999999987643 56677799999999999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000562 378 VILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1419)
|++|++|++++.|+.+++.
T Consensus 224 i~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 224 IIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred EEEEECCEEEEECCHHHHh
Confidence 9999999999999998874
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=319.55 Aligned_cols=195 Identities=25% Similarity=0.408 Sum_probs=165.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-CCCceEEEEccCCCCCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 226 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 36999999999999999999999999999999999998765 99999999876532 124579999999988889999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.+.....+. .+..++.+++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVK-----G 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHh-----h
Confidence 9999875432110 01235677889999877766554 5
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+||++++.+|++++|||||+|||+.++..+.+.|+++++ . +.+++.++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~tH~~~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-Q-GITVLISSHLLSEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEcCCHHHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998875 3 45666788999999999999999999999
Q ss_pred EEEc
Q 000562 387 VYQG 390 (1419)
Q Consensus 387 v~~G 390 (1419)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=330.86 Aligned_cols=206 Identities=26% Similarity=0.389 Sum_probs=171.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|+..+++.+
T Consensus 14 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 4579999999999999999999999999999999999865 468999999986532 23455799999998888889
Q ss_pred cHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
|+.|++.++...... .........+.++++++.+++.+..++.. ..||||||||++||++|+.+|++|+|||||
T Consensus 92 tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~ 166 (255)
T PRK11231 92 TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPT 166 (255)
T ss_pred cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999875311000 01111223456788999999987776653 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.+
T Consensus 167 ~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~ 223 (255)
T PRK11231 167 TYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQGTPE 223 (255)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEcCHH
Confidence 999999999999999999877999999999986 57788999999985 7899988764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=332.97 Aligned_cols=202 Identities=25% Similarity=0.335 Sum_probs=169.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCCC-C
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH-S 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~-~ 914 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.. .
T Consensus 13 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 13 DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 3569999999999999999999999999999999999876 468999999987531 1345679999998753 3
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
...|+.|++.+....+ ....++..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 91 ~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~laraL~~~p~lllLDE 162 (271)
T PRK13638 91 FYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSHGQKKRVAIAGALVLQARYLLLDE 162 (271)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 4568999998764332 1223334456788999999987776643 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||+|||+.++..+.+.|++++++|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 163 Pt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 163 PTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred CcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999877999999999976 46678999999985 799999875
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=333.28 Aligned_cols=200 Identities=28% Similarity=0.338 Sum_probs=171.3
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL--PEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 459999999999999999999999999999999999876 468999999987643 234567999999973 56678
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||+||+.+..... ....++..+.++++++.++|.+..+..+ ..||||||||++||++|+.+|+||+|||||+
T Consensus 98 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~ 169 (279)
T PRK13635 98 TVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGGQKQRVAIAGVLALQPDIIILDEATS 169 (279)
T ss_pred cHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998865433 1233444567899999999988777654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+++.|++++++ |+|||+++|+++. + ..+|++++|.+ |++++.|+.
T Consensus 170 gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 224 (279)
T PRK13635 170 MLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-A-AQADRVIVMNK-GEILEEGTP 224 (279)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-H-HcCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999876 8999999999763 4 46999999985 799999985
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=343.85 Aligned_cols=209 Identities=27% Similarity=0.420 Sum_probs=176.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|. +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999875 9999999998765432 46799999999888999
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++..... + .+.. . ..+...+++++++.+||.+..|+.+
T Consensus 93 tv~e~v~~~~~~~~-~-~~~~-------------~---------------~~~~~~~v~~~le~vgl~~~~~~~~----- 137 (402)
T PRK09536 93 DVRQVVEMGRTPHR-S-RFDT-------------W---------------TETDRAAVERAMERTGVAQFADRPV----- 137 (402)
T ss_pred CHHHHHHhccchhc-c-cccC-------------C---------------CHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence 99999988532110 0 0000 0 0011235788999999988777665
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
+.|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ . +++|+.++|+.+++.++||++++|++|
T Consensus 138 ~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~-g~TIIivsHdl~~~~~~adrii~l~~G 215 (402)
T PRK09536 138 TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-D-GKTAVAAIHDLDLAARYCDELVLLADG 215 (402)
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 46999999999999999999999999999999999999999999999975 3 456777899999999999999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+++++.
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=319.54 Aligned_cols=192 Identities=30% Similarity=0.352 Sum_probs=161.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCC-CCCCCCH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDW-QVAEMTV 226 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 226 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 36999999999999999999999999999999999998775 9999999988754333467999999973 3457899
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.++....+ . ....++++++.+||++..++.++ .
T Consensus 90 ~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~ 126 (205)
T cd03226 90 REELLLGLKELD--A------------------------------------GNEQAETVLKDLDLYALKERHPL-----S 126 (205)
T ss_pred HHHHhhhhhhcC--c------------------------------------cHHHHHHHHHHcCCchhcCCCch-----h
Confidence 999987532110 0 01235678899999887776654 6
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.+++.++|+..++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQ--GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998653 45677788999999999999999999997
Q ss_pred E
Q 000562 387 V 387 (1419)
Q Consensus 387 v 387 (1419)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=319.11 Aligned_cols=215 Identities=22% Similarity=0.310 Sum_probs=179.4
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC-C-CCCeeeEEEECCccCCCCCC-------CceEEEEccC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-H-HLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQ 217 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 217 (1419)
...+++|||+.+++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.+.. .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999997 4 34568999999997755432 2589999999
Q ss_pred C--CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccc
Q 000562 218 D--WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1419)
Q Consensus 218 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1419)
+ .+-|.+||.+.+.-..+...... ..++...++.++|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------------------------------~~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------------------------------SKKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------------------------------hhHHHHHHHHHHHHHcCCCCHH
Confidence 6 57788999988865443211000 0112344577889999998642
Q ss_pred cccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 000562 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1419)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 375 (1419)
. +-+.+...|||||||||.||.||+.+|++|+.|||||+||..++.+|++.|+++.++ .+++++.++|+..-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e-~~~aiilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQRE-KGTALILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhc
Confidence 1 335677889999999999999999999999999999999999999999999999874 4778888999999999999
Q ss_pred CeEEEEcCCeEEEEcChhhHH
Q 000562 376 DDVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 376 D~vilL~~G~iv~~G~~~~~~ 396 (1419)
|+|+||+.|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=332.17 Aligned_cols=206 Identities=29% Similarity=0.400 Sum_probs=171.2
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+
T Consensus 23 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 23 GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 3579999999999999999999999999999999999865 468999999986532 23456799999998888899
Q ss_pred cHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
|+.|++.+....... .........+.++++++.+++.+..+..+ ..||||||||++||++|+.+|+||+|||||
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt 175 (265)
T PRK10575 101 TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSGGERQRAWIAMLVAQDSRCLLLDEPT 175 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999875321110 00111223456788999999987666654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+..
T Consensus 176 ~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~~~~~~ 233 (265)
T PRK10575 176 SALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIAQGTPA 233 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 999999999999999999765 899999999986 56788999999985 7899988753
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=323.99 Aligned_cols=202 Identities=28% Similarity=0.409 Sum_probs=169.4
Q ss_pred ccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEc-cCCCCCC
Q 000562 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCE-QNDIHSP 915 (1419)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~d~~~~ 915 (1419)
++.+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++ |++.+++
T Consensus 31 ~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 345679999999999999999999999999999999999866 468999999986432 23456799997 5566778
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+....+. ...++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++||||
T Consensus 109 ~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 109 DLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8999999988654432 222334456788999999988777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999764 899999999986 46778999999985 7887764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=332.47 Aligned_cols=201 Identities=25% Similarity=0.358 Sum_probs=171.1
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
..+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.+||++|++. .+...
T Consensus 17 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 17 KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 359999999999999999999999999999999999866 568999999987543 234567899999963 33467
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||.|++.+..... ....+...+.++++++.++|.+..+..+ +.||||||||++||++|+.+|++|+|||||+
T Consensus 95 tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrl~laraL~~~p~llilDEPt~ 166 (277)
T PRK13652 95 TVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTA 166 (277)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998765432 2233444556889999999987777654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+.+.+++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 167 gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~g~~ 222 (277)
T PRK13652 167 GLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAYGTV 222 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEECCH
Confidence 99999999999999999875 899999999986 56788999999985 799999985
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=328.91 Aligned_cols=204 Identities=25% Similarity=0.343 Sum_probs=171.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCC-CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1419)
++|+|+|++|++||+++|+|||||||||||++|+|.++|. +|+|.++|+++..... ++.++|++|++. .++..
T Consensus 21 ~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~ 97 (279)
T PRK13635 21 YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA 97 (279)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc
Confidence 5999999999999999999999999999999999999876 9999999998865332 357999999973 57778
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||.|||.++....+... .+....++++++.+||++..++.++
T Consensus 98 tv~enl~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~---- 139 (279)
T PRK13635 98 TVQDDVAFGLENIGVPR----------------------------------EEMVERVDQALRQVGMEDFLNREPH---- 139 (279)
T ss_pred cHHHHHhhhHhhCCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCCcc----
Confidence 99999988643221100 0012246788999999887776654
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+.+++. .+|+|++|++|
T Consensus 140 -~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~-~~~tilivsH~~~~~~-~~d~i~~l~~G 216 (279)
T PRK13635 140 -RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQ-KGITVLSITHDLDEAA-QADRVIVMNKG 216 (279)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc-CCCEEEEEecCHHHHH-cCCEEEEEECC
Confidence 59999999999999999999999999999999999999999999998763 3566666888888886 59999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+.+++.
T Consensus 217 ~i~~~g~~~~~~ 228 (279)
T PRK13635 217 EILEEGTPEEIF 228 (279)
T ss_pred EEEEECCHHHHh
Confidence 999999988765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=329.36 Aligned_cols=207 Identities=20% Similarity=0.330 Sum_probs=172.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 35999999999999999999999999999999999998775 999999998875432 135699999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||.||+.+....... .+ .. .....++.+++.+||++..++.++
T Consensus 97 ~~~tv~enl~~~~~~~~~---~~------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~- 142 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---LP------AP------------------------LLHSTVMMKLEAVGLRGAAKLMPS- 142 (269)
T ss_pred CCCCHHHHHHHHHHHccC---CC------HH------------------------HHHHHHHHHHHHcCChhhhhCChh-
Confidence 999999999875321100 00 00 011235678899999887776654
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|++++.. .+++|+.++|+..++.+++|++++|
T Consensus 143 ----~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~g~tiiivsH~~~~~~~~~d~v~~l 217 (269)
T PRK11831 143 ----ELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSA-LGVTCVVVSHDVPEVLSIADHAYIV 217 (269)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhhCEEEEE
Confidence 59999999999999999999999999999999999999999999998653 2456777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999987763
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=327.21 Aligned_cols=213 Identities=24% Similarity=0.348 Sum_probs=171.8
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 35999999999999999999999999999999999998775 999999998875432 245699999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.++..... .... .. .+.. ..+....++++++.+||.+..+..+
T Consensus 92 ~~~tv~~~l~~~~~~~~--~~~~---~~------~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~-- 143 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYK--PTWR---SL------LGRF---------------SEEDKERALSALERVGLADKAYQRA-- 143 (243)
T ss_pred ccccHHHHHhhcccccc--cchh---hh------hccc---------------cHHHHHHHHHHHHHcCcHhhhcCCc--
Confidence 99999999987532100 0000 00 0000 0011234677889999987666544
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+.+++.+++|++++|
T Consensus 144 ---~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~tH~~~~~~~~~d~v~~l 219 (243)
T TIGR02315 144 ---DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKE-DGITVIINLHQVDLAKKYADRIVGL 219 (243)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH-cCCEEEEEeCCHHHHHHhcCeEEEE
Confidence 469999999999999999999999999999999999999999999998653 2456777889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 000562 382 SEGQIVYQGPRVSV 395 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1419)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=330.70 Aligned_cols=208 Identities=28% Similarity=0.390 Sum_probs=171.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEECCccCCc--------ccccceEEEEccCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ--------ETFARISGYCEQND 911 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~--------~~~~~~~gyv~Q~d 911 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+... ...++.++|++|++
T Consensus 16 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 16 QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 457999999999999999999999999999999999986532 236999999986532 12345789999999
Q ss_pred CCCCCccHHHHHHHHhhhcCCC-----CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000562 912 IHSPGLTVLESLLFSAWLRLPS-----EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1419)
Q Consensus 912 ~~~~~lTv~E~l~f~a~lr~~~-----~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~ 986 (1419)
.+++.+|++|++.+......+. ....++.++.++++++.+++.+..+..+ ..||+|||||++|||+|+.+
T Consensus 96 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~ 170 (262)
T PRK09984 96 NLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV-----STLSGGQQQRVAIARALMQQ 170 (262)
T ss_pred ccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc-----cccCHHHHHHHHHHHHHhcC
Confidence 9899999999998753211000 0111233456889999999987766653 47999999999999999999
Q ss_pred CCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ .+.+.+|++++|.+ |++++.|+..
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIVALRQ-GHVFYDGSSQ 238 (262)
T ss_pred CCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999999999754 899999999986 46788999999985 7899999864
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=328.72 Aligned_cols=202 Identities=23% Similarity=0.268 Sum_probs=166.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
..+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 20 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 99 (254)
T PRK14273 20 FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNP 99 (254)
T ss_pred ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeecccc
Confidence 46999999999999999999999999999999999976531 248999999987531 2345679999999877
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc----cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~----~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
++ +||+||+.+....+.. ......++.++++++.+++. +..++. ++.||||||||++|||+|+.+|++
T Consensus 100 ~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 171 (254)
T PRK14273 100 FL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN-----ALSLSGGQQQRLCIARTLAIEPNV 171 (254)
T ss_pred cc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCE
Confidence 74 8999999886543211 12233345678888888873 223332 458999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||||+|||+.++..+++.|++++ +++|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 233 (254)
T PRK14273 172 ILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFLN-GCIEEESST 233 (254)
T ss_pred EEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999996 4799999999986 46678999999985 799999874
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=322.77 Aligned_cols=206 Identities=35% Similarity=0.512 Sum_probs=165.0
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1419)
.+++|+|+|+++++||+++|+||||||||||+++|+|.+++..+.+|+|.++|+++.....++.++|++|++.+++.+||
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv 98 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTV 98 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcH
Confidence 35799999999999999999999999999999999999872112499999999887543446789999999998999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHH-HHHHhCCcccccccccCccCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY-IMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~-~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
+||+.|+........... . . ....++. .++.+++++..++.+ +
T Consensus 99 ~enl~~~~~~~~~~~~~~---~-~---------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (226)
T cd03234 99 RETLTYTAILRLPRKSSD---A-I---------------------------RKKRVEDVLLRDLALTRIGGNLV-----K 142 (226)
T ss_pred HHHHHHHHHhhcccccch---H-H---------------------------HHHHHHHHHHHhhcchhhhcccc-----c
Confidence 999998654322110000 0 0 0112333 788888876655544 4
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecCh-hHHHhhcCeEEEEcCC
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA-PEAYELFDDVILLSEG 384 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~-~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.++++.+. +. +++.++|+. .++.+++|++++|++|
T Consensus 143 ~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~-tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 143 GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NR-IVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred CcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CC-EEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 69999999999999999999999999999999999999999999988653 44 455566665 6899999999999999
Q ss_pred eEEEEc
Q 000562 385 QIVYQG 390 (1419)
Q Consensus 385 ~iv~~G 390 (1419)
+++++|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=373.97 Aligned_cols=205 Identities=26% Similarity=0.338 Sum_probs=165.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|++|+|||.++|+||||||||||+|+|+|.++|. +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999987654 578999999998765 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++|||.++.. . ..+.+.+++ +.+. .+.. .-.|++..||.+|+. .
T Consensus 542 TI~eNi~~~~~-~----~~e~i~~al------------------~~a~---------l~~~--i~~lp~G~dt~ige~-G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L----TLDEAWEAA------------------RMAG---------LAED--IRAMPMGMHTVISEG-G 586 (686)
T ss_pred cHHHHHhcCCC-C----CHHHHHHHH------------------HHcC---------cHHH--HHhccccccccccCC-C
Confidence 99999987532 0 011111111 1100 0111 123677889999975 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.+||||||||++||||++++|++++||||||+||+.++.+|.+.|++. ++| ++.++|.. +..+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T-~IiItHr~-~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVT-RIVIAHRL-STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCe-EEEEecCh-HHHHcCCEEEEEECC
Confidence 689999999999999999999999999999999999999999999864 344 45566665 445679999999999
Q ss_pred eEEEEcChhhHHH
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1419)
+++++|+++++.+
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999998863
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=328.18 Aligned_cols=205 Identities=22% Similarity=0.297 Sum_probs=169.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
+..+|+|+|+++++||++||+||||||||||+++|+|..++. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 16 SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 356999999999999999999999999999999999976421 258999999987531 234567999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++.+||+||+.+....+. ....+..++.++++++.+++.. ..+. .+..||||||||++|||+|+.+|+
T Consensus 96 ~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 168 (258)
T PRK14241 96 PFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDK-----PGGGLSGGQQQRLCIARAIAVEPD 168 (258)
T ss_pred cCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999988754332 1123334556788899998842 2232 245799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe-----cCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~ 1054 (1419)
+++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+ +.|++++.|+.
T Consensus 169 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 169 VLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNLEATGKPGRLVEIDDT 237 (258)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccCCCCceEEecCCH
Confidence 9999999999999999999999999864 689999999976 4678899999997 24899999885
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=329.74 Aligned_cols=206 Identities=27% Similarity=0.380 Sum_probs=171.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++.+
T Consensus 13 ~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 4579999999999999999999999999999999999866 468999999987542 23345689999998777889
Q ss_pred cHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 918 TVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
||+|++.+....... ......+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 165 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPT 165 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 999999875311000 00111223456788999999987766654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|++ |+++..|+..
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 166 NHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 999999999999999999877899999999987 57788999999985 7899998753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=331.41 Aligned_cols=206 Identities=24% Similarity=0.350 Sum_probs=171.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.++|++|++.+++.+
T Consensus 19 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT--PAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 3569999999999999999999999999999999999876 458999999987532 23345799999999888899
Q ss_pred cHHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 918 TVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
|++|++.+......+. ....+...+.++++++.+++.+..++.+ +.||||||||++|||+|+.+|++++|||||
T Consensus 97 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEPt 171 (265)
T PRK10253 97 TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGGQRQRAWIAMVLAQETAIMLLDEPT 171 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 9999998753111100 0011223456789999999987766653 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+|||+.++..+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++.|+..
T Consensus 172 ~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 229 (265)
T PRK10253 172 TWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALRE-GKIVAQGAPK 229 (265)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999864 899999999986 57788999999985 7999999863
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=314.67 Aligned_cols=196 Identities=31% Similarity=0.568 Sum_probs=162.1
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEECCcc
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYP 894 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~ 894 (1419)
.++|+|+++.++.+ .+++.+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 46788888877532 13467999999999999999999999999999999999986522 568999999987
Q ss_pred CCc--ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHH
Q 000562 895 KRQ--ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972 (1419)
Q Consensus 895 ~~~--~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgG 972 (1419)
... ...++.++|++|++.+++.+||+|++.+.+..+ .+. .+..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----~~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----FVRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----chhhCCHH
Confidence 643 234667999999999999999999998753211 122 23579999
Q ss_pred HHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEe
Q 000562 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051 (1419)
Q Consensus 973 qrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~ 1051 (1419)
||||++||++|+.+|++++|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|++ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 678777766643467788999999985 788876
Q ss_pred C
Q 000562 1052 G 1052 (1419)
Q Consensus 1052 G 1052 (1419)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=324.29 Aligned_cols=205 Identities=20% Similarity=0.331 Sum_probs=171.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-----CCceEEEEccCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 222 (1419)
+++|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++..++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 35999999999999999999999999999999999998765 999999999875421 2457999999998888
Q ss_pred CCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 223 EMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
.+||+||+.++... .+.. . .+....++++++.+||++..|..+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~-- 134 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------K------------------------EEAEKQARELLAKVGLAERAHHYP-- 134 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------H------------------------HHHHHHHHHHHHHcCChHHHhcCh--
Confidence 99999999875321 1100 0 001224577889999987666554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
+.|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++++. +++++.++|+.+++.+++|++++|
T Consensus 135 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l 209 (240)
T PRK09493 135 ---SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEE--GMTMVIVTHEIGFAEKVASRLIFI 209 (240)
T ss_pred ---hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999988642 466777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999987764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=318.26 Aligned_cols=190 Identities=24% Similarity=0.367 Sum_probs=162.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC---c----ccccceEEEEccCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR---Q----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~d~~ 913 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.. . ...++.++|++|++.+
T Consensus 10 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 10 DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 4579999999999999999999999999999999999876 46899999998742 1 1245679999999998
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++.+|++||+.+....+ .....+..+.++++++.+++.+..+..+ ..||+|||||++||++|+.+|++|+||
T Consensus 88 ~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllD 159 (206)
T TIGR03608 88 IENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILAD 159 (206)
T ss_pred ccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 88999999999865432 1223344556889999999987776654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEE
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1042 (1419)
|||+|||+.+...+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 160 EPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 160 EPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 999999999999999999999877999999999975 44679999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=319.69 Aligned_cols=201 Identities=28% Similarity=0.353 Sum_probs=163.2
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCC--CC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--WQ 220 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 220 (1419)
++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999998775 999999999876533 245799999998 45
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-ccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLV 299 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~v 299 (1419)
++.+||+||+.+.....+.... + + ......+.+++.+||. ...+..+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~~-~--------~-----------------------~~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLSK-K--------E-----------------------ARKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCcH-H--------H-----------------------HHHHHHHHHHHHCCCChhHhhCCc
Confidence 6789999999876432211000 0 0 0011124678888985 4455544
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|+
T Consensus 144 -----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~ 217 (228)
T cd03257 144 -----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEEL-GLTLLFITHDLGVVAKIADRVA 217 (228)
T ss_pred -----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCeEE
Confidence 4699999999999999999999999999999999999999999999987532 4566778899999999999999
Q ss_pred EEcCCeEEEEc
Q 000562 380 LLSEGQIVYQG 390 (1419)
Q Consensus 380 lL~~G~iv~~G 390 (1419)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=332.40 Aligned_cols=200 Identities=27% Similarity=0.357 Sum_probs=167.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCC--C
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND--I 912 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d--~ 912 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++ .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV--PTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ 97 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh
Confidence 359999999999999999999999999999999999866 468999999987532 23456799999986 3
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
++ ..||+|++.+...... ...++..+.++++++.++|.+ ..+.. +..||||||||++||++|+.+|++|+
T Consensus 98 ~~-~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~lll 168 (280)
T PRK13649 98 LF-EETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKN-----PFELSGGQMRRVAIAGILAMEPKILV 168 (280)
T ss_pred hc-cccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 44 4699999988653321 223334456788999999963 44443 35799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (280)
T PRK13649 169 LDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-GKLVLSGKP 229 (280)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999877999999999976 46678999999985 799988875
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=313.92 Aligned_cols=173 Identities=62% Similarity=1.002 Sum_probs=151.8
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.. ..+++.++|++|++.+++.+|++|
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-~~~~~~i~~~~q~~~~~~~~tv~~ 98 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVRE 98 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH-HHhhhceEEecccCccccCCcHHH
Confidence 4699999999999999999999999999999999997432246899999998764 345567999999998889999999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~ 1001 (1419)
++.+...++ .||||||||++||++|+.+|++++|||||+|||+
T Consensus 99 ~l~~~~~~~-------------------------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 99 ALRFSALLR-------------------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred HHHHHHHHh-------------------------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 998642110 4999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
.++..+++.|+++++.|+|||+++|+++.++.+.+|++++|+++|++++.|
T Consensus 142 ~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 142 QAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999987799999999998644677899999998647998875
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=357.52 Aligned_cols=123 Identities=25% Similarity=0.360 Sum_probs=102.3
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-cCCcccCCCCCCCCHHHHHHHHHHHHHhhCC---Ccce
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANP---SIVF 991 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p---~ill 991 (1419)
.+|+.|++.|...++. .....+.++.+||... .+.. ...||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 3789999888654321 1123678899999753 3443 3479999999999999999999 9999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe-----cCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~ 1054 (1419)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|+++.|. +||++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446899999994 47999999985
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=320.99 Aligned_cols=195 Identities=27% Similarity=0.375 Sum_probs=165.1
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCccc------c-cceEEEEccCCCCCC
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET------F-ARISGYCEQNDIHSP 915 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~------~-~~~~gyv~Q~d~~~~ 915 (1419)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+..... . ++.++|++|++.+++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD--GSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIP 101 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCC
Confidence 59999999999999999999999999999999999866 46899999998754211 1 357999999998889
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+....+. ....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 102 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrl~la~al~~~p~llllDEP 173 (228)
T PRK10584 102 TLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQLSGGEQQRVALARAFNGRPDVLFADEP 173 (228)
T ss_pred CcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999988654331 122334567889999999987766553 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEE
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~ 1050 (1419)
|+|||+.+...+.+.|++++++ |.|||+++|+++ .+ +.+|++++|++ |+++.
T Consensus 174 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~i~~ 226 (228)
T PRK10584 174 TGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQLQE 226 (228)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CEEEe
Confidence 9999999999999999999764 899999999976 34 56999999985 67764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=326.01 Aligned_cols=207 Identities=23% Similarity=0.302 Sum_probs=166.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCC---CCceEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK---TGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
.+.+|+|+|+++++||+++|+|+||||||||+++|+|.. +..+.+|+|.++|.+... ...++.++|++|++.
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 15 DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 356999999999999999999999999999999999952 211247999999987642 234567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++ .|++||+.+....+.. ...+...+.++++++.+++.+....... ..+..||||||||++|||+|+.+|++++|
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllL 170 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLM 170 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 776 5999999886543311 1122334567889999998642211111 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 171 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~~~~~~~~ 229 (250)
T PRK14245 171 DEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GEMVEYDDT 229 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999985 5899999999986 46788999999985 799999975
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=333.17 Aligned_cols=207 Identities=20% Similarity=0.228 Sum_probs=174.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCC--C
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1419)
..+|+|||++|++||+++|+|+||||||||+++|+|.+.+. +|+|.++|.++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 46999999999999999999999999999999999998765 899999999876543 245799999997 5
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc-ccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 298 (1419)
+.+.+||.+++........... + .+...++.++++.+||+. ..++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLS---------A------------------------AERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCC---------H------------------------HHHHHHHHHHHHHCCCChHHhcCC
Confidence 7888999999976543221000 0 011234678899999963 45554
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+..|||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+.. +++++.++|+...+.+++|+|
T Consensus 152 -----p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~-g~til~iTHdl~~~~~~adrv 225 (327)
T PRK11308 152 -----PHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL-GLSYVFISHDLSVVEHIADEV 225 (327)
T ss_pred -----CccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEE
Confidence 45699999999999999999999999999999999999999999999987643 566777999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 226 ~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998875
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=313.77 Aligned_cols=196 Identities=20% Similarity=0.292 Sum_probs=148.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCC--CCCCCc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND--IHSPGL 917 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d--~~~~~l 917 (1419)
+.+.++++++|-|.-...+||+||||.||||||++|.|... +..|+..-| .+-.+|+..|.. .+...-
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~--P~~GE~RKn--------hrL~iG~FdQh~~E~L~~Ee 667 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD--PNDGELRKN--------HRLRIGWFDQHANEALNGEE 667 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC--CCcchhhcc--------ceeeeechhhhhHHhhcccc
Confidence 45678899999999999999999999999999999999876 446664322 233578887763 233445
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|.-|.|.-. . +++.+ .....+-.+||...++++- +..|||||+-||++|.--+..|+||||||||+
T Consensus 668 tp~EyLqr~--F----Nlpyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQKaRValaeLal~~PDvlILDEPTN 733 (807)
T KOG0066|consen 668 TPVEYLQRK--F----NLPYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQKARVALAELALGGPDVLILDEPTN 733 (807)
T ss_pred CHHHHHHHh--c----CCChH----HHHHHhhhhhhhhccceEe----eeecCCcchHHHHHHHHhcCCCCEEEecCCCC
Confidence 666666421 1 12222 2356788889988888763 46799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCCchhHHHH
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK 1063 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~~~~~~~~ 1063 (1419)
+||..+...+-++|++. ...||+++||-+. +.+.-..+.|+.+.|.-...|...+...++++
T Consensus 734 NLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLd 795 (807)
T KOG0066|consen 734 NLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEIDGDFEDYKKEVLD 795 (807)
T ss_pred CcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhccccHHHHHHHHHH
Confidence 99999999999999886 5689999999764 55666788888877765666765443333333
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=321.75 Aligned_cols=202 Identities=27% Similarity=0.391 Sum_probs=172.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
.+.+++|+|++++|||+++|+|+||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++..++.+|+
T Consensus 12 ~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET--PTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 3579999999999999999999999999999999999876 4589999999876431 234678999999998889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+....+. .......+.++++++.+++.+..+..+ ..||+|||||++||++|+.+|++++|||||+||
T Consensus 90 ~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~gL 161 (232)
T cd03300 90 FENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161 (232)
T ss_pred HHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988654432 222334456788999999987777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 162 D~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 999999999999999765 899999999975 46788999999985 799888864
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=318.40 Aligned_cols=196 Identities=20% Similarity=0.333 Sum_probs=161.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999998775 9999999998765432 1469999999988
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++.+||+||+.+........ .. +....+.++++.+||++..++.+
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 139 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINHRP- 139 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCh-
Confidence 88999999998754321100 00 01123567888999987666555
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
..|||||||||+|||+|+.+|++++|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++. .+|++++
T Consensus 140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~tH~~~~~~-~~d~v~~ 213 (221)
T TIGR02211 140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNREL-NTSFLVVTHDLELAK-KLDRVLE 213 (221)
T ss_pred ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHh-hcCEEEE
Confidence 4699999999999999999999999999999999999999999999987533 455666788887775 4799999
Q ss_pred EcCCeEE
Q 000562 381 LSEGQIV 387 (1419)
Q Consensus 381 L~~G~iv 387 (1419)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=367.34 Aligned_cols=208 Identities=27% Similarity=0.385 Sum_probs=170.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|++++|||.++|+||||||||||++.|.|.+++. +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 342 ~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~ 417 (567)
T COG1132 342 KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-G 417 (567)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-c
Confidence 46999999999999999999999999999999999999886 9999999999987754 588999999998776 7
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+|||.++..- ...+.+.++++.. ..+..+ ..|++++||.||+ ..
T Consensus 418 TI~~NI~~g~~~----at~eei~~a~k~a---------------------------~~~d~I--~~lp~g~dt~vge-~G 463 (567)
T COG1132 418 TIRENIALGRPD----ATDEEIEEALKLA---------------------------NAHEFI--ANLPDGYDTIVGE-RG 463 (567)
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHHh---------------------------ChHHHH--HhCcccccceecC-CC
Confidence 999999986421 0112222222111 011222 2357789999995 45
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.+||||||||++||||++.+|++|+||||||+||+.+...|.+.++++.+ ++|+++ +.|..+.+.+ +|+|++|++|
T Consensus 464 ~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~ii-IaHRlsti~~-aD~IiVl~~G 539 (567)
T COG1132 464 VNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLI-IAHRLSTIKN-ADRIIVLDNG 539 (567)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEE-EeccHhHHHh-CCEEEEEECC
Confidence 57999999999999999999999999999999999999999999997653 456666 7777766655 9999999999
Q ss_pred eEEEEcChhhHHH
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1419)
+++++|+++++..
T Consensus 540 ~i~e~G~h~eLl~ 552 (567)
T COG1132 540 RIVERGTHEELLA 552 (567)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-34 Score=324.66 Aligned_cols=205 Identities=21% Similarity=0.313 Sum_probs=170.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-----------CCCceEEEEccC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----------VPPRTSAYVSQQ 217 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q~ 217 (1419)
++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|+++... ..++.++|++|+
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~ 93 (250)
T PRK11264 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQN 93 (250)
T ss_pred eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEecC
Confidence 5999999999999999999999999999999999998765 89999999887532 123579999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccc
Q 000562 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1419)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1419)
+.+++.+||+||+.++..... +.. . .+....++.+++.+||++..|+
T Consensus 94 ~~~~~~~tv~e~l~~~~~~~~-~~~-----~---------------------------~~~~~~~~~~l~~~gl~~~~~~ 140 (250)
T PRK11264 94 FNLFPHRTVLENIIEGPVIVK-GEP-----K---------------------------EEATARARELLAKVGLAGKETS 140 (250)
T ss_pred cccCCCCCHHHHHHHHHHHhc-CCC-----H---------------------------HHHHHHHHHHHHHcCCcchhhC
Confidence 988889999999987532110 000 0 0012235678889999876665
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.+ +.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++... +.+|+.++|+..++.+++|+
T Consensus 141 ~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tvi~~tH~~~~~~~~~d~ 213 (250)
T PRK11264 141 YP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE--KRTMVIVTHEMSFARDVADR 213 (250)
T ss_pred Ch-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhcCE
Confidence 54 469999999999999999999999999999999999999999999988653 45667788999999999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000562 378 VILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1419)
+++|++|++++.|+.+++.
T Consensus 214 i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 214 AIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999987763
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=328.55 Aligned_cols=203 Identities=24% Similarity=0.341 Sum_probs=169.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc------cccceEEEEccCC--C
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQND--I 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~d--~ 912 (1419)
.+.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++ .
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 3579999999999999999999999999999999999876 4689999999875421 1356799999986 4
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
+.+.+||+|++.+...... .......++.++++++.+++. +..+.. +..||||||||++||++|+.+|++|+
T Consensus 101 ~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LSgGe~qrv~laral~~~p~ill 173 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PRQLSGGQLQRINIARALAVKPKLIV 173 (265)
T ss_pred cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6678999999977543211 122233445688999999995 555554 34799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|++ |++++.|+.
T Consensus 174 LDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (265)
T TIGR02769 174 LDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDK-GQIVEECDV 235 (265)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeC-CEEEEECCH
Confidence 99999999999999999999999865 899999999976 46678999999985 799999885
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=321.47 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=170.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC--CceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 225 (1419)
+++|+|+|+.+++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 36999999999999999999999999999999999998775 9999999988754322 257999999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 91 ~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~----- 131 (236)
T TIGR03864 91 VRQNLRYHAALHGLSR----------------------------------AEARERIAALLARLGLAERADDKVR----- 131 (236)
T ss_pred HHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhcCChh-----
Confidence 9999987543221000 0011235678889999877776654
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++++.++|+.+++. .+|++++|++|+
T Consensus 132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQ-GLSVLWATHLVDEIE-ADDRLVVLHRGR 209 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecChhhHh-hCCEEEEEeCCe
Confidence 599999999999999999999999999999999999999999999987533 456667888888886 499999999999
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
+++.|+.+++.
T Consensus 210 i~~~~~~~~~~ 220 (236)
T TIGR03864 210 VLADGAAAELR 220 (236)
T ss_pred EEEeCCHHHHH
Confidence 99999887764
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=341.28 Aligned_cols=194 Identities=27% Similarity=0.399 Sum_probs=168.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCCCCCCCccH
Q 000562 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++++||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR--PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 8999999999999999999999999999999876 468999999987532 1245679999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|+.... ...+.++.++++++.++|.+..+..+ ..||||||||++|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99999865321 12233456889999999988777654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999865 899999999986 57788999999985 799999875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=291.79 Aligned_cols=206 Identities=25% Similarity=0.345 Sum_probs=177.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
..+|+|+|+.|.+||.++++||||||||||||+++|...|. .|+|.+||.+++-- ...-|.|+|++.++|-+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 56999999999999999999999999999999999999886 99999999988643 33458999999999999999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||++|+.++.|.++. .+ ..++.+.+..+||++..+..| -.|
T Consensus 93 dNvafgL~l~Gi~k~-------~R---------------------------~~~a~q~l~~VgL~~~~~~~i-----~qL 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QR---------------------------REIAHQMLALVGLEGAEHKYI-----WQL 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HH---------------------------HHHHHHHHHHhCcccccccce-----Eee
Confidence 999999998876532 11 224677889999998766544 469
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 385 (1419)
||||||||.|||||..+|+.|+||||+.+||.-++.++.+.|-.+.+..+ ..+..++|+.+|+.-+++++++|+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tg-k~~lliTH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETG-KQVLLITHDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhC-CeEEEEeccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999998887654 455569999999999999999998 589
Q ss_pred EEEEcChhhHHHH
Q 000562 386 IVYQGPRVSVLDF 398 (1419)
Q Consensus 386 iv~~G~~~~~~~~ 398 (1419)
|+..-+.+-...|
T Consensus 213 vv~~~~~df~rR~ 225 (259)
T COG4525 213 VVERLPLDFARRY 225 (259)
T ss_pred eeEecCCCHHHHh
Confidence 9987776644443
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=359.39 Aligned_cols=209 Identities=22% Similarity=0.332 Sum_probs=175.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|||+++++||+++|+||||||||||+++|+|..++++.+|+|.++|.+.... ..++.+||++|++.+++.
T Consensus 17 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 17 GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 4579999999999999999999999999999999999865323589999999876432 124569999999988899
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
+||+|++.+....+.......++..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|+||||||||
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt 171 (506)
T PRK13549 97 LSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGLGQQQLVEIAKALNKQARLLILDEPT 171 (506)
T ss_pred CcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 999999988654321111122334456889999999987777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
+|||+.++..+++.|++++++|.|||+++|+++ .+.+.+|++++|++ |++++.|+..+
T Consensus 172 ~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 229 (506)
T PRK13549 172 ASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGTRPAAG 229 (506)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeeeccccc
Confidence 999999999999999999878999999999976 46678999999985 79999998754
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=329.83 Aligned_cols=201 Identities=28% Similarity=0.358 Sum_probs=170.1
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCC-CCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~-~~~ 915 (1419)
+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 469999999999999999999999999999999999866 458999999987631 124567999999863 334
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
..||+|++.+..... ....++..+.+.++++.++|.+..+..+ +.||||||||+.||++|+.+|++++||||
T Consensus 93 ~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 93 APTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 579999998764322 1223344566889999999988877654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+++.|++++++|+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 221 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIKEGTP 221 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999976 46678999999986 799999885
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=318.14 Aligned_cols=196 Identities=29% Similarity=0.447 Sum_probs=166.2
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCCH
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 226 (1419)
++|+|+|+++++| +++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+||
T Consensus 14 ~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 14 RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 6999999999999 99999999999999999999998776 999999998775432 24679999999998999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.+.....+... .+....++.+++.+||++..++.++ .
T Consensus 90 ~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 130 (211)
T cd03264 90 REFLDYIAWLKGIPS----------------------------------KEVKARVDEVLELVNLGDRAKKKIG-----S 130 (211)
T ss_pred HHHHHHHHHHhCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHhCchh-----h
Confidence 999987543321100 0012236778899999877776654 5
Q ss_pred CChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeE
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~i 386 (1419)
|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|++++. + ++++.++|+..++.+++|++++|++|++
T Consensus 131 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~l~~g~i 207 (211)
T cd03264 131 LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--D-RIVILSTHIVEDVESLCNQVAVLNKGKL 207 (211)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--C-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998864 3 6677788999999999999999999999
Q ss_pred EEEc
Q 000562 387 VYQG 390 (1419)
Q Consensus 387 v~~G 390 (1419)
++.|
T Consensus 208 ~~~g 211 (211)
T cd03264 208 VFEG 211 (211)
T ss_pred EecC
Confidence 8765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=322.25 Aligned_cols=202 Identities=30% Similarity=0.407 Sum_probs=172.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
.+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++.+++.+|+
T Consensus 12 ~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 3569999999999999999999999999999999999866 4589999999876432 234679999999988889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
.||+.+....+. .......+.++++++.+++.+..+... +.||+||+||++||++|+.+|++++|||||+||
T Consensus 90 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~L 161 (237)
T TIGR00968 90 RDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGAL 161 (237)
T ss_pred HHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999987654331 122333456788999999987766653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 162 D~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 215 (237)
T TIGR00968 162 DAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIGSP 215 (237)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEecCH
Confidence 999999999999998775 899999999986 46788999999985 799999885
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=326.55 Aligned_cols=205 Identities=26% Similarity=0.352 Sum_probs=169.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999998775 999999999876432 2467999999974 5778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++....+.. . .+....++++++.+||++..++.+
T Consensus 99 ~tv~enl~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 140 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP--P--------------------------------KKMKDIIDDLAKKVGMEDYLDKEP---- 140 (271)
T ss_pred ccHHHHHHhHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHhhCCc----
Confidence 99999998754321100 0 001224677889999987777665
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. ++++|+.++|+..++. .+|++++|++
T Consensus 141 -~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~-~~d~v~~l~~ 217 (271)
T PRK13632 141 -QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKT-RKKTLISITHDMDEAI-LADKVIVFSE 217 (271)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEEechhHHh-hCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998753 3456666777777774 7999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|+++..|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999887753
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=287.59 Aligned_cols=200 Identities=30% Similarity=0.401 Sum_probs=171.4
Q ss_pred cccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccC
Q 000562 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQN 910 (1419)
Q Consensus 838 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~ 910 (1419)
..+...||++|++.+++||-+||+|||||||||||-+|+|... +.+|+|.+.|++... .-+.+.+|+|+|.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~--~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD--PSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC--CCCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 3456789999999999999999999999999999999999877 468999999988532 1234689999999
Q ss_pred CCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 911 d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
..+.|++|..||+...+.++.... ....+...+.++.+||.+-.+.+ +.+|||||+|||+||||++..|+||
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~---~~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESS---ADSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred eeccccchhhhhccchhhhcCCcc---ccHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEE
Confidence 999999999999998877775322 22334567889999998776655 3489999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEE
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIY 1050 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~ 1050 (1419)
|.||||-+||..+...|.+.+-.+.+ .|.|.|++||||+ +...|||.+-|.. |+++.
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 99999999999999999999988864 5999999999986 6678999999986 67763
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=317.86 Aligned_cols=197 Identities=26% Similarity=0.369 Sum_probs=165.4
Q ss_pred ccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCC
Q 000562 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQND 911 (1419)
Q Consensus 839 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d 911 (1419)
++++.+ |+|+++++ |+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++
T Consensus 10 ~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 84 (214)
T cd03297 10 LPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK--PDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQY 84 (214)
T ss_pred cCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecccccchhhhhhHhhcEEEEecCC
Confidence 344445 99999999 9999999999999999999999866 468999999987531 12356799999999
Q ss_pred CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 912 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
.+++.+|++|++.+..... .....++.++++++.+++.+..+.. +..||||||||++||++|+.+|++++
T Consensus 85 ~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 85 ALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred ccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8888999999998764321 1223345678899999998766654 35799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999999999999999865 899999999976 46678999999985 7887765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=320.11 Aligned_cols=202 Identities=25% Similarity=0.315 Sum_probs=167.3
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC--CCCceEEEEc-cCCCCCC
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--VPPRTSAYVS-QQDWQVA 222 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~-Q~d~~~~ 222 (1419)
.++++|+|+|+.+++|++++|+|||||||||||++|+|.++|+ +|+|.++|++.... ..++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 3457999999999999999999999999999999999998775 99999999875332 2245789997 5566778
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
.+||+||+.+.....+... ++....++.+++.+||++..|+.++
T Consensus 109 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~-- 152 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLPP----------------------------------ARFKKRLDELSELLDLEELLDTPVR-- 152 (236)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCChh--
Confidence 8999999987543321100 0011235678889999988887765
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+++|++++|+
T Consensus 153 ---~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 153 ---QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRER-GTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEecCHHHHHHhCCEEEEEe
Confidence 599999999999999999999999999999999999999999999987543 4567778899999999999999999
Q ss_pred CCeEEEEc
Q 000562 383 EGQIVYQG 390 (1419)
Q Consensus 383 ~G~iv~~G 390 (1419)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=328.72 Aligned_cols=209 Identities=25% Similarity=0.394 Sum_probs=170.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc------eEEEEEEECCccCCc---ccccceEEEEccC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG------IIEGDIYISGYPKRQ---ETFARISGYCEQN 910 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~ 910 (1419)
+++.+|+|+|++|++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+... ..+++.++|++|+
T Consensus 12 ~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~ 91 (272)
T PRK13547 12 RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQA 91 (272)
T ss_pred CCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEeccc
Confidence 3457999999999999999999999999999999999976521 127999999987532 2345568999999
Q ss_pred CCCCCCccHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHh-----
Q 000562 911 DIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV----- 984 (1419)
Q Consensus 911 d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~----- 984 (1419)
+..++.+|++|++.+....+.. ......+..+.++++++.+++.+..+.. +..||||||||++||++|+
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~~~~ 166 (272)
T PRK13547 92 AQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGELARVQFARVLAQLWPP 166 (272)
T ss_pred CCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhccccc
Confidence 8766679999999875321110 0111123345678899999998766654 3579999999999999999
Q ss_pred ----hCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 985 ----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 985 ----~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
.+|++|+|||||+|||+.+...+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+..
T Consensus 167 ~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 167 HDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred cccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 599999999999999999999999999999876 899999999986 46678999999985 7999999853
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=334.95 Aligned_cols=203 Identities=26% Similarity=0.291 Sum_probs=171.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCC--CC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d--~~ 913 (1419)
..+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++||+|++ .+
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~--p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l 105 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET--PTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSL 105 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC--CCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhc
Confidence 579999999999999999999999999999999999876 458999999987542 13456799999997 57
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
.|.+|+.+++........ .....+.++++.++++.+||.+ ..+.. +..||||||||++||+||+.+|++|++
T Consensus 106 ~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~~LSgGq~QRv~iArAL~~~P~lLil 178 (327)
T PRK11308 106 NPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHYDRY-----PHMFSGGQRQRIAIARALMLDPDVVVA 178 (327)
T ss_pred CCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHhcCC-----CccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 889999999877544321 2234455667899999999963 44543 458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||||+|||..++..|++.|+++.++ |.|||++|||.+ .+.+.+|++++|.+ |+++..|+..
T Consensus 179 DEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~-G~ive~g~~~ 240 (327)
T PRK11308 179 DEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYL-GRCVEKGTKE 240 (327)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999764 999999999976 45678999999985 7999999853
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-35 Score=337.52 Aligned_cols=202 Identities=27% Similarity=0.411 Sum_probs=167.2
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1419)
+.++|+|+|+++++||.++|+|++|||||||++.|+|-++++ +|+|+.||.++..... ++.++.++|... +..
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~h-lF~ 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVH-LFS 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchH-HHH
Confidence 346999999999999999999999999999999999999887 9999999999877665 467899999875 556
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCC-------ccccc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-------DTCAD 296 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~d 296 (1419)
.|+|+||..+...- .|++ .-.+++.+|| ++..|
T Consensus 426 ~Tlr~NL~lA~~~A----------------------sDEe------------------l~~aL~qvgL~~l~~~~p~gl~ 465 (573)
T COG4987 426 GTLRDNLRLANPDA----------------------SDEE------------------LWAALQQVGLEKLLESAPDGLN 465 (573)
T ss_pred HHHHHHHhhcCCCC----------------------CHHH------------------HHHHHHHcCHHHHHHhChhhhh
Confidence 79999998753210 0111 1223333333 44778
Q ss_pred ccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 000562 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1419)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 376 (1419)
|.+|+ +.++||||||||++|||+|++++++++|||||.|||+.|..++++.+.+.++ +++++.++|+...+ +.||
T Consensus 466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~---~kTll~vTHrL~~l-e~~d 540 (573)
T COG4987 466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE---GKTLLMVTHRLRGL-ERMD 540 (573)
T ss_pred chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc---CCeEEEEecccccH-hhcC
Confidence 99986 5568999999999999999999999999999999999999999999987653 45566688887766 6789
Q ss_pred eEEEEcCCeEEEEcChhhHHH
Q 000562 377 DVILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~~ 397 (1419)
+|++|++|+++++|.+.++..
T Consensus 541 rIivl~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 541 RIIVLDNGKIIEEGTHAELLA 561 (573)
T ss_pred EEEEEECCeeeecCCHHhhhc
Confidence 999999999999999998864
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=331.97 Aligned_cols=211 Identities=22% Similarity=0.302 Sum_probs=171.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1419)
.++|+|+|++|++||+++|+|||||||||||++|+|..++. .+.+|+|.++|+++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35999999999999999999999999999999999987531 13589999999988532 235679999999997
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
+ +.||+|||.|+....+... .+ ..+..++.+++.++|.+..++.++
T Consensus 175 ~-~~ti~eNi~~~~~~~~~~~----------~~-----------------------~~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 F-EMSIFDNVAYGPRNNGIND----------RK-----------------------ILEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred C-CCcHHHHHHhHHHhcCCCh----------HH-----------------------HHHHHHHHHHHHcCCcchhhhhhh
Confidence 7 5899999998643221100 00 001224566777777655556665
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+...+|||||||||+||||++.+|+|++|||||+|||+.+...+.+.|+++.+ +.++++++|....+.+.+|+|++
T Consensus 221 -~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~---~~Tii~iTH~l~~i~~~~Driiv 296 (329)
T PRK14257 221 -KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK---KYSIIIVTHSMAQAQRISDETVF 296 (329)
T ss_pred -CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEE
Confidence 45668999999999999999999999999999999999999999999998754 36677799999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999874
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=366.36 Aligned_cols=135 Identities=21% Similarity=0.316 Sum_probs=107.0
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-cCCcccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELV---ANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~lSgGqrqrl~iA~~L~---~~p~ 988 (1419)
.+...||.|+|.++..-........++..+.+ ++++.+||.+. .+.. ...||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 44578999999886542211111123334445 47888999775 4554 3479999999999999998 6999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe-----cCCEEEEeCCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~~ 1055 (1419)
+++|||||+|||+.+...+++.|++++++|.|||+++|++. .+ ..+|++++|. .||+++..|+..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999976 34 8899999995 368999999863
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=323.88 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=167.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC-ceEEEEEEECCccCCc---ccccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 14 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~- 92 (246)
T PRK14269 14 KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV- 92 (246)
T ss_pred CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-
Confidence 35799999999999999999999999999999999997531 2468999999987643 234567999999988887
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
.|++||+.+....+.... .....+++++++++.+++.+....... ...+.||||||||++|||+|+.+|++++|||||
T Consensus 93 ~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 170 (246)
T PRK14269 93 KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLK-QNALALSGGQQQRLCIARALAIKPKLLLLDEPT 170 (246)
T ss_pred ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 699999988654432111 122334567889999999532111111 124579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 171 ~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 225 (246)
T PRK14269 171 SALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GELIEFGES 225 (246)
T ss_pred ccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEEEEECCH
Confidence 99999999999999999864 899999999976 46778999999985 799999874
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=339.86 Aligned_cols=190 Identities=24% Similarity=0.370 Sum_probs=166.8
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-------ccccceEEEEccCCCCCCCccH
Q 000562 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
|+|+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.+... ...++.+||++|++.+++++||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR--PQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 8999999999999999999999999999999876 468999999987532 1245679999999999999999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+||+.|+.. ....+.++++++.++|.+..+..+ ..||||||||++|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999988532 112345789999999988777654 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~ 213 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPL 213 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCH
Confidence 999999999999999865 899999999986 57788999999985 799999985
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=324.97 Aligned_cols=216 Identities=23% Similarity=0.302 Sum_probs=173.8
Q ss_pred ceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC--C-ceEEEEEEEC
Q 000562 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYIS 891 (1419)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~ 891 (1419)
..+.++|+++.. ++..+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++
T Consensus 12 ~~l~~~~l~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~ 78 (260)
T PRK10744 12 SKIQVRNLNFYY-------------GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLD 78 (260)
T ss_pred ceEEEEEEEEEe-------------CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEEC
Confidence 345666665543 22469999999999999999999999999999999999753 1 1358999999
Q ss_pred CccCCc-----ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCccc
Q 000562 892 GYPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIG 962 (1419)
Q Consensus 892 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g 962 (1419)
|.+... ..+++.++|++|++.+++ .|++||+.+....+. ....++..++++++++.+++.+ ..+..
T Consensus 79 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 153 (260)
T PRK10744 79 GENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS-- 153 (260)
T ss_pred CEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC--
Confidence 987532 234567999999988777 899999988654321 1223334456889999998743 22322
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEE
Q 000562 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1419)
Q Consensus 963 ~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1042 (1419)
...||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||+++|++. ++.+.+|++++|
T Consensus 154 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l 228 (260)
T PRK10744 154 ---GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTAFM 228 (260)
T ss_pred ---CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 45799999999999999999999999999999999999999999999986 4789999999976 466789999999
Q ss_pred ecCCEEEEeCCC
Q 000562 1043 KRGGELIYAGPL 1054 (1419)
Q Consensus 1043 ~~gG~~~~~G~~ 1054 (1419)
++ |+++..|+.
T Consensus 229 ~~-G~i~~~g~~ 239 (260)
T PRK10744 229 YL-GELIEFGNT 239 (260)
T ss_pred EC-CEEEEeCCH
Confidence 85 799998874
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-34 Score=322.76 Aligned_cols=208 Identities=21% Similarity=0.302 Sum_probs=168.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC--Cc-eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--GG-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|++|++||+++|+|+||||||||+++|+|..+ +. +.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 16 KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 3569999999999999999999999999999999999753 11 247999999987532 234667999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++.+|++||+.+....+. .....+.++.++++++.+++.+....... ..+..||||||||++||++|+.+|++|+|
T Consensus 96 ~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~G~~qrl~laral~~~p~llll 172 (252)
T PRK14256 96 PFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAMELSGGQQQRLCIARTIAVKPEVILM 172 (252)
T ss_pred CCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999999999987643321 11223334567888999998542111111 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 173 DEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14256 173 DEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYM-GDLVECGET 231 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999975 689999999976 56688999999985 799999885
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.68 Aligned_cols=205 Identities=21% Similarity=0.300 Sum_probs=167.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-------CCceEEEEccCCC-
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW- 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 219 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999998775 999999999875421 2356999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc-ccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~ 298 (1419)
.+...||+||+.|.....+... .+....++.+++.+||.. ..+..
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (280)
T PRK13649 97 QLFEETVLKDVAFGPQNFGVSQ----------------------------------EEAEALAREKLALVGISESLFEKN 142 (280)
T ss_pred hhccccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCChhhhhCC
Confidence 3335799999987543211100 001123567888899963 44544
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|++
T Consensus 143 ~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiiivsH~~~~~~~~~d~i 215 (280)
T PRK13649 143 P-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQS--GMTIVLVTHLMDDVANYADFV 215 (280)
T ss_pred c-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeccHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998652 556777889999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988763
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=333.59 Aligned_cols=207 Identities=18% Similarity=0.255 Sum_probs=169.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC-c-eEEEEEEECCccCCc---cc----ccceEEEEccCC-
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG-G-IIEGDIYISGYPKRQ---ET----FARISGYCEQND- 911 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-~-~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~d- 911 (1419)
..+|+||||+|++||++||+|+||||||||+++|+|..+. + +.+|+|.++|.++.. .. +++.++|++|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 5799999999999999999999999999999999997642 2 468999999987542 11 224699999997
Q ss_pred -CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 912 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 912 -~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
.+.|.+|+.+++........ ....++.++.+.++++.++|.+..+.. ...+..|||||||||+||+||+.+|++|
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l--~~~p~~LSgGq~QRv~iArAL~~~P~ll 175 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRL--DVYPHQLSGGMSQRVMIAMAIACRPKLL 175 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHH--hCCchhCCHHHHHHHHHHHHHHhCCCEE
Confidence 47889999998876543321 123445567789999999997532111 1124589999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
++||||+|||+.++..+++.|+++.+ .|.|+|++|||++ .+.+.+|++++|.+ |+++..|+.
T Consensus 176 ilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~~-G~ive~g~~ 238 (326)
T PRK11022 176 IADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMYA-GQVVETGKA 238 (326)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999976 4899999999986 46678999999985 899999985
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-34 Score=316.52 Aligned_cols=198 Identities=24% Similarity=0.314 Sum_probs=166.9
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-ccccceEEEEccCCCCCCCccHHHH
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1419)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~ 922 (1419)
.++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++.+|++||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE--PASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 3569999999999999999999999999999999876 458999999987543 2345679999999999999999999
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 000562 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1419)
Q Consensus 923 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~ 1002 (1419)
+.+....+. ... .+.++.++++++.+++.+..+..+ ..||+|||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KLN-AEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Ccc-HHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987542211 111 223456788999999987776653 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCC
Q 000562 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1419)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1053 (1419)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~-g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQ-GKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEEC-CeEEEecC
Confidence 999999999998764 899999999976 46678999999985 79988774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=324.79 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=166.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC---CceEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... ..+.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 98 (253)
T PRK14242 19 FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNP 98 (253)
T ss_pred eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCC
Confidence 469999999999999999999999999999999999742 11358999999987532 2345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .||+||+.+....+.. ...+...+.++++++.+++.+....... ..+..||||||||++||++|+.+|++|+||
T Consensus 99 ~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 99 FP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred Cc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 87 5999999887543311 1222334567888999888542111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14242 175 EPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM-GKLIEVGPT 232 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999985 4799999999986 46688999999985 799988874
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=338.60 Aligned_cols=195 Identities=25% Similarity=0.405 Sum_probs=169.6
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-------CCCceEEEEccCCCCCCCCC
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1419)
|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++++|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999998776 99999999886431 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|+.+.. ....++.+++.+||++..+..+ +
T Consensus 93 v~enl~~~~~~~----------------------------------------~~~~~~~~l~~~gl~~~~~~~~-----~ 127 (352)
T PRK11144 93 VRGNLRYGMAKS----------------------------------------MVAQFDKIVALLGIEPLLDRYP-----G 127 (352)
T ss_pred HHHHHHhhhhhh----------------------------------------hHHHHHHHHHHcCCchhhhCCc-----c
Confidence 999998753200 0123577889999987777655 4
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|++++|++|+
T Consensus 128 ~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tii~vTHd~~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 128 SLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI-NIPILYVSHSLDEILRLADRVVVLEQGK 206 (352)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCeEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4567778999999999999999999999
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999998874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=337.73 Aligned_cols=211 Identities=23% Similarity=0.403 Sum_probs=174.5
Q ss_pred cceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCc
Q 000562 814 PLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893 (1419)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~ 893 (1419)
+-++.|+|+.+++. +++++|+++||+|++||.+||+|+|||||||++++|.+... .+|+|+|||.
T Consensus 349 ~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG~ 413 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDGQ 413 (591)
T ss_pred CCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECCe
Confidence 44588888887763 34569999999999999999999999999999999998764 4899999999
Q ss_pred cCCc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------ccCCcccC
Q 000562 894 PKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGL 963 (1419)
Q Consensus 894 ~~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~ 963 (1419)
+++. +..|+.+||||||..++ +-||.+|+.|+. .+.+.+ .|-++.+..++.+ -.++.+|.
T Consensus 414 dik~~~~~SlR~~Ig~VPQd~~LF-ndTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VGe 483 (591)
T KOG0057|consen 414 DIKEVSLESLRQSIGVVPQDSVLF-NDTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVGE 483 (591)
T ss_pred eHhhhChHHhhhheeEeCCccccc-chhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHhh
Confidence 8643 56889999999987776 569999999863 233322 3455555555543 33455776
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe
Q 000562 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1419)
Q Consensus 964 ~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1043 (1419)
.|. .|||||||||+|||+++.+|+|+++|||||.||+.+...+++.+++. ..|+|+|++.|+. ++...||+|++|+
T Consensus 484 rG~-~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l--~ll~~~DkI~~l~ 559 (591)
T KOG0057|consen 484 RGL-MLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRL--DLLKDFDKIIVLD 559 (591)
T ss_pred ccc-ccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecc--hhHhcCCEEEEEE
Confidence 553 59999999999999999999999999999999999999999999994 4689999999996 4788999999999
Q ss_pred cCCEEEEeCCC
Q 000562 1044 RGGELIYAGPL 1054 (1419)
Q Consensus 1044 ~gG~~~~~G~~ 1054 (1419)
+ |++...|+-
T Consensus 560 n-G~v~e~gth 569 (591)
T KOG0057|consen 560 N-GTVKEYGTH 569 (591)
T ss_pred C-CeeEEeccH
Confidence 6 789988885
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=291.33 Aligned_cols=201 Identities=28% Similarity=0.401 Sum_probs=177.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
..+|+|+|++|.+||.++++||||||||||||+++|..+ +..|+|.+||.++.-..- .-|.|+|++.++|-+|+.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~--P~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC--cccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 458999999999999999999999999999999999887 568999999998653221 2389999999999999999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~ 1001 (1419)
|+.|+..++ .+.+.++.+.+.+.+..+||.+..+..+ -+||||||||+.|||||+.+|++|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999999887 4567888899999999999999887765 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hcCCEEEEEecCCCHHHHHhcCeEEEEecC-CEEEEeCCCC
Q 000562 1002 RAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLG 1055 (1419)
Q Consensus 1002 ~~~~~i~~~l~~l~-~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g-G~~~~~G~~~ 1055 (1419)
-+++.++++|-++. ++|+.++++||+.. +..-.+++++||+.| |+++..-|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999999886 56999999999986 455578999999832 6888777763
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=328.60 Aligned_cols=200 Identities=24% Similarity=0.342 Sum_probs=169.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.+||++|++. .++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK--PQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA 99 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc
Confidence 468999999999999999999999999999999999876 468999999987643 234667999999974 56788
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|++||+.+..... ....++..+.++++++.+++.+..+..+ +.||||||||++|||+|+.+|++|+|||||+
T Consensus 100 tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~lllLDEP~~ 171 (271)
T PRK13632 100 TVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSGGQKQRVAIASVLALNPEIIIFDESTS 171 (271)
T ss_pred cHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998864322 1223334556889999999987777654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+++.|++++++ ++|||+++|+++. + ..+|++++|.+ |+++..|+.
T Consensus 172 gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 226 (271)
T PRK13632 172 MLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVIVFSE-GKLIAQGKP 226 (271)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEEEEEC-CEEEEecCH
Confidence 99999999999999999766 5999999999863 4 47999999985 799988875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=320.33 Aligned_cols=199 Identities=27% Similarity=0.379 Sum_probs=170.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccHHHH
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLES 922 (1419)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~ 922 (1419)
+|+|+|++|+|||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.|+
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 7999999999999999999999999999999999866 5689999999876431 234679999999998989999999
Q ss_pred HHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHH
Q 000562 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1419)
Q Consensus 923 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~ 1002 (1419)
+.+..... .....+..+.+.++++.++|.+..+..+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1222334456788999999987777654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1003 ~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
++..+.+.|++++.+ |+|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998765 999999999986 46778999999985 799988875
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-34 Score=321.58 Aligned_cols=206 Identities=19% Similarity=0.331 Sum_probs=171.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+.+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|+++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 36999999999999999999999999999999999998775 9999999988765332 3579999999988888
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.+..+..... + . .+....++.+++.+||++..++.+
T Consensus 93 ~tv~enl~~~~~~~~~~---~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 135 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDL---S------A------------------------EQREDRANELMEEFHIEHLRDSMG---- 135 (241)
T ss_pred CcHHHHHhhhhhccccc---C------H------------------------HHHHHHHHHHHHHcCCHHHhhcch----
Confidence 99999998753321100 0 0 001224567889999987655544
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
+.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.+++++. . +.+++.++|+..++.+++|++++|++
T Consensus 136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-g~tiii~sH~~~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 136 -QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-S-GLGVLITDHNVRETLAVCERAYIVSQ 212 (241)
T ss_pred -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-c-CCEEEEEEcCHHHHHHhcCEEEEEeC
Confidence 46999999999999999999999999999999999999999999998764 2 45666788888999999999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999987763
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=331.42 Aligned_cols=200 Identities=21% Similarity=0.300 Sum_probs=166.3
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC--------cccccceEEEEccCCCC-
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--------QETFARISGYCEQNDIH- 913 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~--------~~~~~~~~gyv~Q~d~~- 913 (1419)
.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.. ...+++.++|++|++..
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~ 102 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII--SETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQ 102 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEccccccccccHHHHhccEEEEEeCcchh
Confidence 59999999999999999999999999999999999876 46899999998752 12345679999999742
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
....|++||+.|....+ ....++..+.++++++.++|. +..+.. ++.||||||||++|||+|+.+|++|+|
T Consensus 103 ~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlL 174 (289)
T PRK13645 103 LFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS-----PFELSGGQKRRVALAGIIAMDGNTLVL 174 (289)
T ss_pred hhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 23469999998864322 122333445678899999994 555554 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 235 (289)
T PRK13645 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GKVISIGSP 235 (289)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999998764 899999999986 57788999999985 799988874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=326.24 Aligned_cols=220 Identities=23% Similarity=0.284 Sum_probs=174.1
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 892 (1419)
.+.++|+++.. +++.+|+|+|++|+|||+++|+|+||||||||+++|+|..++ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFY-------------GEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEE-------------CCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 45666665543 234699999999999999999999999999999999997542 13689999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCC
Q 000562 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1419)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 967 (1419)
.++.. ..+++.++|++|++.+++. ||+||+.+....+.. .....+..+.++++++.+++.+....... ..+.
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLH-EPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhh-CCcc
Confidence 87632 2345679999999887775 999999987543321 11223334567889999998642111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCE
Q 000562 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1419)
Q Consensus 968 ~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~ 1047 (1419)
.||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+...+|++++|++ |+
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 239 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHL-GN 239 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEEC-CE
Confidence 7999999999999999999999999999999999999999999999865 789999999976 46678999999985 79
Q ss_pred EEEeCCC
Q 000562 1048 LIYAGPL 1054 (1419)
Q Consensus 1048 ~~~~G~~ 1054 (1419)
++..|+.
T Consensus 240 i~~~g~~ 246 (267)
T PRK14235 240 LVEVGDT 246 (267)
T ss_pred EEEeCCH
Confidence 9998874
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=322.12 Aligned_cols=196 Identities=24% Similarity=0.313 Sum_probs=166.7
Q ss_pred ceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc-cccceEEEEccCCCCCCCccHHHHHHH
Q 000562 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLF 925 (1419)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~d~~~~~lTv~E~l~f 925 (1419)
|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999866 4689999999875431 224579999999999999999999987
Q ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHH
Q 000562 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1419)
Q Consensus 926 ~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~ 1005 (1419)
...... .. .+..++.++++++.+++.+..+..+ ..||||||||++||++++.+|++++|||||+|||+.++.
T Consensus 95 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred cccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 532111 11 1233456889999999988777664 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1006 ~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
.+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999998764 899999999986 46678999999985 799999885
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=332.32 Aligned_cols=208 Identities=21% Similarity=0.259 Sum_probs=171.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-eEEEEEEECCccCCc---cc---c-cceEEEEccCC-
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-IIEGDIYISGYPKRQ---ET---F-ARISGYCEQND- 911 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~~~G~i~i~g~~~~~---~~---~-~~~~gyv~Q~d- 911 (1419)
...+|+|||++|++||++||+|+||||||||+++|+|..+.. ..+|+|.++|.++.. .. + ++.++||+|++
T Consensus 28 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 28 DVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 357999999999999999999999999999999999986531 238999999987642 11 2 24799999997
Q ss_pred -CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcc
Q 000562 912 -IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1419)
Q Consensus 912 -~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~il 990 (1419)
.+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..+.+||||||||++||+||+.+|++|
T Consensus 108 ~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~p~~LSgG~~QRv~IArAL~~~P~ll 183 (330)
T PRK09473 108 TSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MYPHEFSGGMRQRVMIAMALLCRPKLL 183 (330)
T ss_pred hhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 67889999999977654332 223444556788899999987533221 1 235689999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 991 lLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
++||||+|||..++..+++.|+++.++ |.|+|++|||++ .+.+.+|++++|.+ |+++..|+.
T Consensus 184 ilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~~-G~ive~g~~ 246 (330)
T PRK09473 184 IADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMYA-GRTMEYGNA 246 (330)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999999765 899999999976 46678999999985 899999985
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=364.12 Aligned_cols=209 Identities=22% Similarity=0.358 Sum_probs=166.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
.++|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 36999999999999999999999999999999999999886 9999999999877653 478999999998665 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++|||.++..- ....+.+.+++ +... .+..++ .|++..||.+|+. .
T Consensus 432 Ti~~Ni~~~~~~---~~~~~~i~~al------------------~~~~---------l~~~i~--~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE---QYSREQIEEAA------------------RMAY---------AMDFIN--KMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC---CCCHHHHHHHH------------------HHhC---------cHHHHH--hcccccCceeCCC-C
Confidence 999999875210 00011111111 1000 111122 2677889999975 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
++||||||||++||||++++|++++||||||+||+.++..+.+.|++... ++| ++.++|.. +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~t-vI~VtHr~-~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRL-STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEecch-HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998743 344 45566665 556789999999999
Q ss_pred eEEEEcChhhHHH
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1419)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999998864
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=329.49 Aligned_cols=200 Identities=24% Similarity=0.305 Sum_probs=169.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCCC-CCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDI-HSPG 916 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~-~~~~ 916 (1419)
+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++. .+..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA 100 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc
Confidence 469999999999999999999999999999999999876 468999999987643 234667999999974 2335
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
.||.|++.|..... .....+.++.++++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||
T Consensus 101 ~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 101 TIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 69999999875432 1233444567899999999988777654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|++ |++++.|+.
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 228 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-A-VEADRIIVMDS-GKVVMEGTP 228 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-H-hcCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999764 9999999999873 4 45999999985 799999985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=325.08 Aligned_cols=205 Identities=23% Similarity=0.323 Sum_probs=170.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC----CCceEEEEccCCC-CCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDW-QVA 222 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 222 (1419)
+++|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999875 999999999875422 2467999999974 344
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
..||.||+.|+....+... .+....++++++.+||++..++.++
T Consensus 100 ~~~v~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~gL~~~~~~~~~-- 143 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIPP----------------------------------EEIRERVDESLKKVGMYEYRRHAPH-- 143 (280)
T ss_pred cccHHHHHHhhHhhcCCCH----------------------------------HHHHHHHHHHHHHCCCHhHhhCCcc--
Confidence 5799999988643221100 0012246788999999887777664
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.. +|++++|+
T Consensus 144 ---~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tillvtH~~~~~~~-~d~v~~l~ 218 (280)
T PRK13633 144 ---LLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKK-YGITIILITHYMEEAVE-ADRIIVMD 218 (280)
T ss_pred ---cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecChHHHhc-CCEEEEEE
Confidence 59999999999999999999999999999999999999999999998653 35566668888888865 99999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|+++++|+++++.
T Consensus 219 ~G~i~~~g~~~~~~ 232 (280)
T PRK13633 219 SGKVVMEGTPKEIF 232 (280)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999988875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=317.16 Aligned_cols=195 Identities=27% Similarity=0.383 Sum_probs=164.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 221 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 35999999999999999999999999999999999998775 999999999876432 235799999999989
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.+.....+.. . .+....++++++.+||++..++.++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 135 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP--P--------------------------------REIRKRVPAALELVGLSHKHRALPA- 135 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC--H--------------------------------HHHHHHHHHHHHHcCCHHHhhCChh-
Confidence 9999999998864332110 0 0011235678889999877766554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. +++++.++|+..++.+++|++++|
T Consensus 136 ----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tiiivtH~~~~~~~~~d~i~~l 209 (214)
T cd03292 136 ----ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA--GTTVVVATHAKELVDTTRHRVIAL 209 (214)
T ss_pred ----hcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 69999999999999999999999999999999999999999999998643 456777889999999999999999
Q ss_pred cCCeE
Q 000562 382 SEGQI 386 (1419)
Q Consensus 382 ~~G~i 386 (1419)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.67 Aligned_cols=206 Identities=23% Similarity=0.301 Sum_probs=166.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 5899999999999999999999999999999999998763 13489999999876421 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc----ccccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 297 (1419)
.+||+||+.|+....+.... ......++..++.+|+. +..|+
T Consensus 101 -~~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 -LMSIYDNISYGPKIHGTKDK---------------------------------KKLDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred -cCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHhCCchhhHHHHhC
Confidence 48999999886432211000 00112355667777763 33454
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
. .+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ + ++++.++|+..++.+++|+
T Consensus 147 ~-----~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~sH~~~~~~~~~d~ 218 (254)
T PRK14273 147 N-----ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--S-YTIIIVTHNMQQAGRISDR 218 (254)
T ss_pred C-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCE
Confidence 4 456999999999999999999999999999999999999999999999853 3 5677788999999999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000562 378 VILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1419)
+++|++|+++..|+.+++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=323.13 Aligned_cols=197 Identities=25% Similarity=0.356 Sum_probs=165.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++ .
T Consensus 15 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 15 GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 3469999999999999999999999999999999999865 468999999987532 234567999999988776 6
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
|++|++.+....+ .. ..+.++++++.+++. +..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 92 tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 92 TVKDNIEYGPMLK---GE----KNVDVEYYLSIVGLNKEYATRD-----VKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred hHHHHHhcchhhc---Cc----HHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 9999998753322 11 124567889999996 455543 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEYAKT 216 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEeCCH
Confidence 999999999999999999764 899999999986 46678999999985 789888875
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=316.58 Aligned_cols=193 Identities=27% Similarity=0.392 Sum_probs=162.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 222 (1419)
++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|+++.... .++.++|++|++.+++
T Consensus 16 ~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 16 AALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 5999999999999999999999999999999999998765 999999999876542 2357999999998888
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
.+||+||+.++....+... ...+..++++++.+||++..++.+.
T Consensus 93 ~~tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 136 (214)
T TIGR02673 93 DRTVYENVALPLEVRGKKE----------------------------------REIQRRVGAALRQVGLEHKADAFPE-- 136 (214)
T ss_pred CCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhhhhCChh--
Confidence 9999999988643221000 0012245778899999876666554
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +++++.++|+..++.+++|++++|+
T Consensus 137 ---~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--~~tii~~tH~~~~~~~~~d~i~~l~ 211 (214)
T TIGR02673 137 ---QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKR--GTTVIVATHDLSLVDRVAHRVIILD 211 (214)
T ss_pred ---hCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhcCEEEEec
Confidence 69999999999999999999999999999999999999999999998642 4567778899999999999999999
Q ss_pred CCe
Q 000562 383 EGQ 385 (1419)
Q Consensus 383 ~G~ 385 (1419)
+|+
T Consensus 212 ~G~ 214 (214)
T TIGR02673 212 DGR 214 (214)
T ss_pred CCC
Confidence 985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=329.71 Aligned_cols=205 Identities=24% Similarity=0.318 Sum_probs=170.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-------CCceEEEEccCCC-
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDW- 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 219 (1419)
+.+|+|+|+++++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999876 999999999875321 1357999999962
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
.+..+||+||+.|+....+.. . .+....++++++.+||+ ...++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------E------------------------DEAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCCChhHhhCC
Confidence 344689999998864321110 0 00122467789999996 455655
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+++|+.++|+.+++.++||+|
T Consensus 143 ~~-----~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~--~g~tvlivsH~~~~~~~~~d~v 215 (287)
T PRK13641 143 PF-----ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK--AGHTVILVTHNMDDVAEYADDV 215 (287)
T ss_pred cc-----cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHHhCCEE
Confidence 54 6999999999999999999999999999999999999999999999864 3567777999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=318.91 Aligned_cols=202 Identities=26% Similarity=0.326 Sum_probs=167.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
.++|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 36999999999999999999999999999999999999875 9999999988754332 3569999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhC-CcccccccccCc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1419)
+|++||+.++....+.. .....+.+++.++ +.+..|+.+
T Consensus 90 ~tv~~~l~~~~~~~~~~-------------------------------------~~~~~~~~l~~~~~l~~~~~~~~--- 129 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR-------------------------------------SRKIPDEIYELFPVLKEMLGRRG--- 129 (230)
T ss_pred CcHHHHHHHHHHhcCcc-------------------------------------hHHHHHHHHHHHHhHHHHhhCCh---
Confidence 99999998764321100 0011344566665 454445444
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
+.||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++. .+++++.++|+.+++.+++|+|++|+
T Consensus 130 --~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~~sH~~~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 130 --GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAE-GGMAILLVEQYLDFARELADRYYVME 206 (230)
T ss_pred --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHc-CCcEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998753 25667778899999999999999999
Q ss_pred CCeEEEEcChhhH
Q 000562 383 EGQIVYQGPRVSV 395 (1419)
Q Consensus 383 ~G~iv~~G~~~~~ 395 (1419)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=326.69 Aligned_cols=202 Identities=21% Similarity=0.311 Sum_probs=168.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC--CCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI--HSPG 916 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~--~~~~ 916 (1419)
+.+|+|+|+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.++|++|++. +.+.
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 103 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE--PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPR 103 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcc
Confidence 469999999999999999999999999999999999876 468999999987642 123456999999875 5678
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+|+.|++.+....+. .....+..+.++++++.+++. +..+.. +..||||||||++||++|+.+|+||+||||
T Consensus 104 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLDEP 176 (267)
T PRK15112 104 QRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLAPGQKQRLGLARALILRPKVIIADEA 176 (267)
T ss_pred hhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcCHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 899999988654432 122233445678999999994 555543 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 177 t~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 234 (267)
T PRK15112 177 LASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQ-GEVVERGST 234 (267)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 9999999999999999999765 899999999986 56678999999985 799988874
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.01 Aligned_cols=206 Identities=23% Similarity=0.367 Sum_probs=169.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|. .+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999998752 12389999999987542 1246799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc----ccccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 297 (1419)
+ +||+||+.+.....+.... .+....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKDK---------------------------------KELDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCCcchhhHhhC
Confidence 7 9999999886433210000 00112356788899997 44554
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.+ +.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+++.++|+..++.+++|+
T Consensus 141 ~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~ 212 (247)
T TIGR00972 141 SA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--K-YTIVIVTHNMQQAARISDR 212 (247)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--c-CeEEEEecCHHHHHHhCCE
Confidence 43 46999999999999999999999999999999999999999999998865 3 5677788999999999999
Q ss_pred EEEEcCCeEEEEcChhhHH
Q 000562 378 VILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~~ 396 (1419)
+++|++|+++++|+.+++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987763
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=327.89 Aligned_cols=236 Identities=27% Similarity=0.387 Sum_probs=188.4
Q ss_pred HhcCCCCCCcEEEEeeeEEEEEEecCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcceeeeecceEeEeCCeEEEEEcCC
Q 000562 91 EAVDLELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPP 170 (1419)
Q Consensus 91 ~~~~~~~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~ 170 (1419)
+++.++-|+-.+..|++++- . ...++++|+|+||.+.+|+-++|+|||
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~---P-----------------------------Pg~~~pil~~isF~l~~G~~lgIIGPS 371 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAA---P-----------------------------PGQKKPILKGISFALQAGEALGIIGPS 371 (580)
T ss_pred CCCCCCCCCceeeEeeeeec---C-----------------------------CCCCCcceecceeEecCCceEEEECCC
Confidence 35667777788888888852 1 113467999999999999999999999
Q ss_pred CCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCC---ceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhH
Q 000562 171 SSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247 (1419)
Q Consensus 171 GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~ 247 (1419)
|||||||.++|.|...|. +|.|.+||.+++..++. +.+||.||+--+|+ .||.|||. |+... ...+.+.
T Consensus 372 gSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf~~~-~d~~kIi 443 (580)
T COG4618 372 GSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RFGEE-ADPEKVI 443 (580)
T ss_pred CccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hcccc-CCHHHHH
Confidence 999999999999998765 99999999999877653 78999999987665 59999994 33211 1112222
Q ss_pred HHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcE
Q 000562 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327 (1419)
Q Consensus 248 ~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~i 327 (1419)
++++. .+ ..|- ++.|++.+||.||+. ..+||||||||+++|||++++|.+
T Consensus 444 eAA~l---------------------Ag-----vHel---Il~lP~GYdT~iG~~-G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 444 EAARL---------------------AG-----VHEL---ILRLPQGYDTRIGEG-GATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred HHHHH---------------------cC-----hHHH---HHhCcCCccCccCCC-CCCCCchHHHHHHHHHHHcCCCcE
Confidence 22221 11 1121 567999999999975 458999999999999999999999
Q ss_pred eEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcChhhHHHHH
Q 000562 328 LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFF 399 (1419)
Q Consensus 328 lllDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~~~~~~~~F 399 (1419)
++||||-|.||+....-+.+.+.+... .|+|+|+ + .|.+.+...+|+|++|++|++..+|+++|++...
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvv-i-aHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVV-I-AHRPSALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEE-E-ecCHHHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 999999999999999999999998764 3555554 4 3456788999999999999999999999998754
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=326.64 Aligned_cols=201 Identities=25% Similarity=0.346 Sum_probs=170.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++. +++..
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 358999999999999999999999999999999999876 468999999987643 234567999999974 67788
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|+.+++.|..... ....++..+.++++++.+++.+..+.. +..||+|||||++|||+|+.+|++++|||||+
T Consensus 100 ~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~ 171 (269)
T PRK13648 100 IVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSGGQKQRVAIAGVLALNPSVIILDEATS 171 (269)
T ss_pred cHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998864332 122333445678899999998776654 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|++ |++++.|+..
T Consensus 172 ~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~~g~~~ 227 (269)
T PRK13648 172 MLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYKEGTPT 227 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEEecCHH
Confidence 99999999999999998765 899999999986 354 4999999985 7999999853
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=315.43 Aligned_cols=197 Identities=25% Similarity=0.367 Sum_probs=163.2
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.++
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~ 100 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLI 100 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccC
Confidence 5999999999999999999999999999999999998776 9999999998765432 24699999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||.||+.+.....+.. + .+....++.+++.+||.+..+..++
T Consensus 101 ~~~tv~~~l~~~~~~~~~~---~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~- 145 (228)
T PRK10584 101 PTLNALENVELPALLRGES---S-------------------------------RQSRNGAKALLEQLGLGKRLDHLPA- 145 (228)
T ss_pred CCcCHHHHHHHHHHhcCCC---H-------------------------------HHHHHHHHHHHHHcCCHhHhhCChh-
Confidence 9999999998754322100 0 0012246778899999877666554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|++++... +++|+.++|+..++ +.+|++++|
T Consensus 146 ----~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~-~~~d~i~~l 219 (228)
T PRK10584 146 ----QLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREH-GTTLILVTHDLQLA-ARCDRRLRL 219 (228)
T ss_pred ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEE
Confidence 599999999999999999999999999999999999999999999986533 45566677888777 559999999
Q ss_pred cCCeEEEE
Q 000562 382 SEGQIVYQ 389 (1419)
Q Consensus 382 ~~G~iv~~ 389 (1419)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99999753
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=319.01 Aligned_cols=201 Identities=25% Similarity=0.324 Sum_probs=166.0
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc--eEEEEEEECCccCCcccc-cceEEEEccCCC--CCCCcc
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG--IIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPGLT 918 (1419)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~d~--~~~~lT 918 (1419)
+|+|+|+++++||+++|+||||||||||+++|+|..++. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 478999999999999999999999999999999986520 158999999987654322 357999999974 556789
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc---ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS---LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~---~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+.|++.+....... .....++.++++++.+++.+ ..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999776433211 12333456889999999973 34443 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||+.+...+.+.|++++++ |+|||+++|+++ ++...+|++++|++ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999764 899999999986 56678999999985 799998874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.64 Aligned_cols=200 Identities=27% Similarity=0.387 Sum_probs=167.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
..+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.. ..+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHH
Confidence 35999999999999999999999999999999999998775 9999999998754 234589999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.++....+.. .. +....++.+++.+||++..++.+ ..|
T Consensus 89 e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~-----~~L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KM------------------------QRLEIAHQMLKKVGLEGAEKRYI-----WQL 129 (255)
T ss_pred HHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence 9998754322100 00 01124677899999987666554 469
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc--CCe
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS--EGQ 385 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~--~G~ 385 (1419)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.+++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~tviivsH~~~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQE-TGKQVLLITHDIEEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999988543 24567778899999999999999998 599
Q ss_pred EEEEcCh
Q 000562 386 IVYQGPR 392 (1419)
Q Consensus 386 iv~~G~~ 392 (1419)
++..++.
T Consensus 209 i~~~~~~ 215 (255)
T PRK11248 209 VVERLPL 215 (255)
T ss_pred EEEEecC
Confidence 9998864
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=297.74 Aligned_cols=214 Identities=24% Similarity=0.365 Sum_probs=184.8
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEcc
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQ 909 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q 909 (1419)
++.++.++.+.+|+++|..|++|.+++++|||||||||||.++++..+ ..+|+|.++|.++.. +..++.++..-|
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ 82 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQ 82 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHh
Confidence 345556778899999999999999999999999999999999998766 568999999988643 456777888899
Q ss_pred CCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 910 NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 910 ~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
+......+||+|-+.|+..-.. .....++.+..+++.++.++|+++.|... .+||||||||.-||+.++++.+.
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdy 156 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDY 156 (252)
T ss_pred hchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcE
Confidence 8888889999999999743221 22233556678999999999999999875 47999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
++||||-++||...+..+|+.||+++++ |+|||++.||.+. .-..+|+|+-|++ |+++..|++++
T Consensus 157 vlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 157 VLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred EEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 9999999999999999999999999976 9999999999874 4456799999985 89999999754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.71 Aligned_cols=220 Identities=21% Similarity=0.269 Sum_probs=175.6
Q ss_pred ceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEEC
Q 000562 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYIS 891 (1419)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~ 891 (1419)
..+.++|+++.. +.+.+|+|+|+++++||++||+|+|||||||||++|+|.... .+.+|+|.++
T Consensus 19 ~~l~~~nl~~~~-------------~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (267)
T PRK14237 19 IALSTKDLHVYY-------------GKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYR 85 (267)
T ss_pred eEEEEeeEEEEE-------------CCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEEC
Confidence 346666766543 235699999999999999999999999999999999997642 1468999999
Q ss_pred CccCCc-----ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCC
Q 000562 892 GYPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGI 966 (1419)
Q Consensus 892 g~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 966 (1419)
|.+... ...++.++|++|++.+++ .||+||+.+..... . ....+..++.++++++.+++.+..+.... ..+
T Consensus 86 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~ 161 (267)
T PRK14237 86 GIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH-KSA 161 (267)
T ss_pred CEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc-CCc
Confidence 987632 134567999999988777 59999998864322 1 11233344567888999988532212222 224
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCC
Q 000562 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1419)
Q Consensus 967 ~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG 1046 (1419)
..||||||||++|||+|+.+|++|+|||||+|||+.+...+.+.|+++. ++.|||+++|+++ ++.+.+|++++|++ |
T Consensus 162 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l~~-G 238 (267)
T PRK14237 162 LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFFYL-G 238 (267)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEEEC-C
Confidence 6899999999999999999999999999999999999999999999985 4799999999986 57788999999985 7
Q ss_pred EEEEeCCC
Q 000562 1047 ELIYAGPL 1054 (1419)
Q Consensus 1047 ~~~~~G~~ 1054 (1419)
+++..|+.
T Consensus 239 ~i~~~g~~ 246 (267)
T PRK14237 239 DLIEYDKT 246 (267)
T ss_pred EEEEeCCH
Confidence 99999985
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=322.60 Aligned_cols=208 Identities=21% Similarity=0.298 Sum_probs=167.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--c-eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|.... . +.+|+|.++|.+... ..+++.++|++|++.
T Consensus 17 ~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 17 SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 35699999999999999999999999999999999997531 1 358999999987532 134567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++. |++||+.+....+. ........++.++++++.+++.+....... ..+..||||||||++||++|+.+|++|+|
T Consensus 97 ~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llll 173 (251)
T PRK14244 97 PFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLM 173 (251)
T ss_pred cccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 99999988643331 111223334567889999998652211111 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 174 DEPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999985 4899999999986 46678999999985 799998874
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=322.66 Aligned_cols=204 Identities=25% Similarity=0.323 Sum_probs=168.9
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCC-CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1419)
.+|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999998775 999999999875432 2457999999974 67888
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|+++|+.|.....+.. . ......++.+++.+||.+..|+.+
T Consensus 100 ~v~~~~~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 140 (269)
T PRK13648 100 IVKYDVAFGLENHAVP--Y--------------------------------DEMHRRVSEALKQVDMLERADYEP----- 140 (269)
T ss_pred cHHHHHHhhHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhhCCc-----
Confidence 9999998864322110 0 001123567889999987766554
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. .+++|+.++|+..++.. +|+|++|++|
T Consensus 141 ~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tiiivtH~~~~~~~-~d~i~~l~~G 218 (269)
T PRK13648 141 NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSE-HNITIISITHDLSEAME-ADHVIVMNKG 218 (269)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCchHHhc-CCEEEEEECC
Confidence 469999999999999999999999999999999999999999999988653 24566667788888875 9999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999988764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=360.84 Aligned_cols=206 Identities=22% Similarity=0.313 Sum_probs=165.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|. +|+|.+||+++++... ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999886 8999999999887654 5789999999997765 9
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
++|||.++.. ...+.+.+ .++... .++.++ .|++..||.+|+. ..
T Consensus 431 i~~NI~~~~~-----~~d~~i~~------------------a~~~~g---------l~~~i~--~lp~Gldt~i~e~-g~ 475 (592)
T PRK10790 431 FLANVTLGRD-----ISEEQVWQ------------------ALETVQ---------LAELAR--SLPDGLYTPLGEQ-GN 475 (592)
T ss_pred HHHHHHhCCC-----CCHHHHHH------------------HHHHcC---------cHHHHH--hccccccccccCC-CC
Confidence 9999988531 00111111 111110 111122 2567789999974 45
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+||||||||++|||||+++|+|++||||||+||+.++.+|.+.|++... ++|+|+ ++|.. +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIi-vtHr~-~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVV-IAHRL-STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEE-Eecch-HHHHhCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999998753 345554 55554 5566799999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
++..|+++++.+
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999863
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=321.81 Aligned_cols=194 Identities=23% Similarity=0.297 Sum_probs=165.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1419)
++|+|+|+.+++|++++|+|||||||||||++|+|.++++ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5999999999999999999999999999999999998775 9999999976542 2467999999998888899999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000562 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1419)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1419)
|+.++.. . . ....++.+++.+||.+..+..+ ..||
T Consensus 101 nl~~~~~----~-------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~-----~~LS 135 (257)
T PRK11247 101 NVGLGLK----G-------Q-----------------------------WRDAALQALAAVGLADRANEWP-----AALS 135 (257)
T ss_pred HHHhccc----c-------h-----------------------------HHHHHHHHHHHcCChhHhcCCh-----hhCC
Confidence 9987421 0 0 0112566788999987666554 4699
Q ss_pred hHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000562 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1419)
Q Consensus 309 GGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 388 (1419)
|||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+.. +.+|+.++|+..++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~-~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH-GFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999886543 4566778899999999999999999999999
Q ss_pred EcChh
Q 000562 389 QGPRV 393 (1419)
Q Consensus 389 ~G~~~ 393 (1419)
.|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88653
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=313.12 Aligned_cols=202 Identities=24% Similarity=0.308 Sum_probs=182.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------c-cccceEEEEccCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------E-TFARISGYCEQNDIHS 914 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~-~~~~~~gyv~Q~d~~~ 914 (1419)
..-++|+|++++.||++.|||-||||||||+++|.+... +..|+|.++|.++.. . -+++.++.|+|+..++
T Consensus 41 vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl 118 (386)
T COG4175 41 VVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL 118 (386)
T ss_pred EEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc
Confidence 456789999999999999999999999999999999876 679999999987532 1 2346799999999999
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
|+.||.||..|+..++ ..+.+++++++.+.++.+||.+..+.+. ++||||+||||.+||||+.+|+||+|||
T Consensus 119 PhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDE 190 (386)
T COG4175 119 PHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDE 190 (386)
T ss_pred cchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcCc-----ccccchHHHHHHHHHHHccCCCEEEecC
Confidence 9999999999998776 4567888999999999999999998874 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|.|.|||--+..+++-|.++.++ ++|||++|||.+ |.+..-|||.+|+ +|+++..|.+.
T Consensus 191 aFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 191 AFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred chhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 99999999999999999998654 899999999997 7889999999998 58999999864
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=327.56 Aligned_cols=206 Identities=26% Similarity=0.352 Sum_probs=171.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-----CCCceEEEEccCCC-CCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDW-QVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~-~~~ 222 (1419)
.+|+|+|++|++||+++|+||||||||||+++|+|.+++. +|+|.++|+++... ..++.++|++|++. .+.
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 96 (283)
T PRK13636 20 HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96 (283)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhc
Confidence 5999999999999999999999999999999999998775 99999999987421 12357999999963 345
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
..||+||+.++....+.. . .+....++++++.+||.+..|+.+
T Consensus 97 ~~tv~e~l~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gL~~~~~~~~--- 139 (283)
T PRK13636 97 SASVYQDVSFGAVNLKLP----------E------------------------DEVRKRVDNALKRTGIEHLKDKPT--- 139 (283)
T ss_pred cccHHHHHHhHHHHcCCC----------H------------------------HHHHHHHHHHHHHCCChhhhhCCc---
Confidence 689999998754322110 0 001224678899999987776655
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++.+.||++++|+
T Consensus 140 --~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tillvsH~~~~~~~~~dri~~l~ 216 (283)
T PRK13636 140 --HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL-GLTIIIATHDIDIVPLYCDNVFVMK 216 (283)
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987642 4567778999999999999999999
Q ss_pred CCeEEEEcChhhHHH
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1419)
+|++++.|+.+++..
T Consensus 217 ~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 217 EGRVILQGNPKEVFA 231 (283)
T ss_pred CCEEEEeCCHHHHhc
Confidence 999999999888653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-35 Score=329.21 Aligned_cols=209 Identities=24% Similarity=0.377 Sum_probs=171.4
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCC
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 223 (1419)
++++|+||||++.||+.+|++||||+||||+|+.|-...+-+ +|.|+++|++++... .++.+|.||||..+|.
T Consensus 550 ~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN- 625 (790)
T KOG0056|consen 550 GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN- 625 (790)
T ss_pred CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeec-
Confidence 457999999999999999999999999999999999988765 999999999986543 3578999999998665
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
.|+..||.|+.. +..-+.+.+++ ||+ ...| +++++++.++|+||+++
T Consensus 626 dTI~yNIryak~----~AsneevyaAA------------------kAA--------~IHd---rIl~fPegY~t~VGERG 672 (790)
T KOG0056|consen 626 DTILYNIRYAKP----SASNEEVYAAA------------------KAA--------QIHD---RILQFPEGYNTRVGERG 672 (790)
T ss_pred ceeeeheeecCC----CCChHHHHHHH------------------HHh--------hHHH---HHhcCchhhhhhhhhcc
Confidence 599999988632 11111111111 111 1122 36889999999999988
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.+ |||||||||+|||+++..|.+++|||.||+||..+.+.|..+|.+++. ++|+|+.. |..+.+ --+|.|+++++
T Consensus 673 Lk-LSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvA-HRLSTi-vnAD~ILvi~~ 747 (790)
T KOG0056|consen 673 LK-LSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVA-HRLSTI-VNADLILVISN 747 (790)
T ss_pred cc-cCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEe-eeehhe-ecccEEEEEeC
Confidence 86 999999999999999999999999999999999999999999999985 57777744 444433 45799999999
Q ss_pred CeEEEEcChhhHHH
Q 000562 384 GQIVYQGPRVSVLD 397 (1419)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1419)
|+|++.|.++|++.
T Consensus 748 G~IvErG~HeeLl~ 761 (790)
T KOG0056|consen 748 GRIVERGRHEELLK 761 (790)
T ss_pred CeEeecCcHHHHHh
Confidence 99999999999874
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=310.02 Aligned_cols=171 Identities=54% Similarity=0.916 Sum_probs=152.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCC--CCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|.. + +.+|+|.++|.+......++.++|++|++.+++.+|+
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTV 99 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEeCchHhhhheEEEccCcccCCCCCcH
Confidence 46999999999999999999999999999999999986 5 5689999999986544456789999999988889999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+...++ .||||||||++|||+|+.+|++++|||||+||
T Consensus 100 ~~~i~~~~~~~-------------------------------------~LS~G~~qrv~laral~~~p~illlDEP~~~L 142 (194)
T cd03213 100 RETLMFAAKLR-------------------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGL 142 (194)
T ss_pred HHHHHHHHHhc-------------------------------------cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 99997642110 49999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
|+.++..+.+.|++++++|+|||+++|+++.++.+.+|++++|++ |++++.|
T Consensus 143 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 143 DSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 999999999999999877999999999986557778999999985 7887754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=329.89 Aligned_cols=217 Identities=16% Similarity=0.198 Sum_probs=172.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC-CCeeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1419)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++. .+.+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 46999999999999999999999999999999999998642 2358999999998765432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhhcCC-CCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccc
Q 000562 220 --QVAEMTVRETLDFAGQCQGV-GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD 296 (1419)
Q Consensus 220 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d 296 (1419)
+.+.+||.+++.+....... +..+. . ..+....+.++|+.+||++..+
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~~~----------------~-------------~~~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRWWQ----------------R-------------FGWRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccccc----------------c-------------HHHHHHHHHHHHHHCCCCChHH
Confidence 57889999999753221000 00000 0 0001234678899999975321
Q ss_pred ccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 000562 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1419)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 376 (1419)
+-+.....|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+.. +++++.++|+...+.+++|
T Consensus 151 --~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 151 --AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-NTTILLISHDLQMLSQWAD 227 (330)
T ss_pred --HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCC
Confidence 1123455799999999999999999999999999999999999999999999987643 5677779999999999999
Q ss_pred eEEEEcCCeEEEEcChhhHH
Q 000562 377 DVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~ 396 (1419)
+|++|++|+|++.|+.+++.
T Consensus 228 ri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 228 KINVLYCGQTVETAPSKELV 247 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=325.78 Aligned_cols=214 Identities=23% Similarity=0.281 Sum_probs=171.8
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 892 (1419)
.+.++|+++.. +.+.+|+|+|++|++||+++|+||||||||||+++|+|..+. .+.+|+|.++|
T Consensus 13 ~l~i~nl~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g 79 (269)
T PRK14259 13 IISLQNVTISY-------------GTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDG 79 (269)
T ss_pred eEEEEeEEEEE-------------CCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 46666665543 235699999999999999999999999999999999997541 13589999999
Q ss_pred ccCC-----cccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccC
Q 000562 893 YPKR-----QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGL 963 (1419)
Q Consensus 893 ~~~~-----~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~ 963 (1419)
.+.. ...+++.++|++|++.+++ .||+||+.+.+..+. .. ...++.++++++.+++.. ..+.
T Consensus 80 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~---- 150 (269)
T PRK14259 80 TDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNE---- 150 (269)
T ss_pred EEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCC----
Confidence 8753 1234567999999998887 499999988764331 11 122345677888887742 2232
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe
Q 000562 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1419)
Q Consensus 964 ~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1043 (1419)
.+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|+
T Consensus 151 -~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~ 227 (269)
T PRK14259 151 -SGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFFN 227 (269)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence 2457999999999999999999999999999999999999999999999864 799999999986 5778999999998
Q ss_pred c----------CCEEEEeCCC
Q 000562 1044 R----------GGELIYAGPL 1054 (1419)
Q Consensus 1044 ~----------gG~~~~~G~~ 1054 (1419)
+ +|++++.|+.
T Consensus 228 ~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 228 AEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred ccccccccccccceEEEeCCH
Confidence 5 3678999875
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=319.61 Aligned_cols=202 Identities=26% Similarity=0.394 Sum_probs=166.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~l 224 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (237)
T PRK11614 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM 95 (237)
T ss_pred eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC
Confidence 5999999999999999999999999999999999998775 9999999998765432 35699999999889889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHh-CCcccccccccCcc
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDEM 303 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~l-gL~~~~dt~vg~~~ 303 (1419)
||+||+.++.... . .+ + ....++.+++.+ +|.+..++.+
T Consensus 96 tv~~~l~~~~~~~--~--~~---~-----------------------------~~~~~~~~l~~~~~l~~~~~~~~---- 135 (237)
T PRK11614 96 TVEENLAMGGFFA--E--RD---Q-----------------------------FQERIKWVYELFPRLHERRIQRA---- 135 (237)
T ss_pred cHHHHHHHhhhcc--C--hh---H-----------------------------HHHHHHHHHHHHHHHHHHHhCch----
Confidence 9999998753211 0 00 0 011234455666 4655444433
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
+.|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|++++|++
T Consensus 136 -~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~ 212 (237)
T PRK11614 136 -GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ--GMTIFLVEQNANQALKLADRGYVLEN 212 (237)
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCcHHHHHhhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999998653 45566688999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (237)
T PRK11614 213 GHVVLEDTGDALL 225 (237)
T ss_pred CEEEeeCCHHHHh
Confidence 9999999988763
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=325.73 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=169.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCC-CCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDW-QVAE 223 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~~ 223 (1419)
.+|+|||++|++||+++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++. .+..
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 16 PALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 5999999999999999999999999999999999998775 9999999998764322 357999999975 4677
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
.||+||+.|+....+.. . .+....++.+++.+||++..++.++
T Consensus 93 ~tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~~~--- 135 (274)
T PRK13644 93 RTVEEDLAFGPENLCLP----------P------------------------IEIRKRVDRALAEIGLEKYRHRSPK--- 135 (274)
T ss_pred chHHHHHHhhHHHcCCC----------H------------------------HHHHHHHHHHHHHCCCHHHhcCCcc---
Confidence 89999998764322110 0 0012246778899999887776654
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.. .+++|+.++|+..++ ..+|+|++|++
T Consensus 136 --~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~--~g~til~~tH~~~~~-~~~d~v~~l~~ 210 (274)
T PRK13644 136 --TLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE--KGKTIVYITHNLEEL-HDADRIIVMDR 210 (274)
T ss_pred --cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCCEEEEEecCHHHH-hhCCEEEEEEC
Confidence 6999999999999999999999999999999999999999999999864 256677788888888 56999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|++++.|+.+++.
T Consensus 211 G~i~~~g~~~~~~ 223 (274)
T PRK13644 211 GKIVLEGEPENVL 223 (274)
T ss_pred CEEEEECCHHHHh
Confidence 9999999988764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=332.87 Aligned_cols=210 Identities=16% Similarity=0.210 Sum_probs=168.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--ceEEEEEEECCccCCc---cc----ccceEEEEccCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ET----FARISGYCEQND 911 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~d 911 (1419)
...+|+|||++|++||++||+|+||||||||+++|+|..+. .+.+|+|.++|.++.. .. +++.++||+|++
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35799999999999999999999999999999999998642 2468999999987532 11 234699999997
Q ss_pred C--CCCCccHHHHHHHHhhhcCCCC---CcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000562 912 I--HSPGLTVLESLLFSAWLRLPSE---IELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1419)
Q Consensus 912 ~--~~~~lTv~E~l~f~a~lr~~~~---~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~ 986 (1419)
. +.|.+||.+++.+......... ....+.++.+.++++.++|.+..+.. ...+..|||||||||+||+||+.+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~--~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM--RSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH--hCCchhCCHHHHHHHHHHHHHHCC
Confidence 5 5788999999976422110000 11123445788999999997532211 112458999999999999999999
Q ss_pred CCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+||++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.+ |+++..|+.
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~vm~~-G~ive~g~~ 243 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKINVLYC-GQTVETAPS 243 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999999874 899999999976 46678999999985 899999985
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=354.64 Aligned_cols=207 Identities=27% Similarity=0.369 Sum_probs=174.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||++||+|||||||||||++|+|..+ +.+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 16 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 16 GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT--RDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 4579999999999999999999999999999999999876 4589999999875321 124569999999988999
Q ss_pred ccHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 917 LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
+||+|++.++...+.. ......+.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+||||
T Consensus 94 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEP 168 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSIGEQQMVEIAKVLSFESKVIIMDEP 168 (501)
T ss_pred CcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999886432211 11122334456889999999988777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
|+|||+.++..+++.|+++++.|.|||+++|+++ ++.+.+|++++|++ |+++..|+..+
T Consensus 169 t~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (501)
T PRK10762 169 TDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAEREVAD 227 (501)
T ss_pred cCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEecCcCc
Confidence 9999999999999999999877999999999986 57788999999985 79999998764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=317.13 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=168.1
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC-CCeeeEEEECCccCCCCCC-CceEEEEccCCC--CCCCCC
Q 000562 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-LQVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEMT 225 (1419)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~lT 225 (1419)
+|+|+|+++++|++++|+||||||||||+++|+|.++|. .+.+|+|.++|+++..... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 589999999999999999999999999999999998761 0139999999998765433 257999999974 456789
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc---cccccccCc
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGDE 302 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~~ 302 (1419)
+.|++.+.....+.. . ......++++++.+||++ ..++.
T Consensus 81 ~~~~~~~~~~~~~~~---------~-------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~---- 122 (230)
T TIGR02770 81 MGNHAIETLRSLGKL---------S-------------------------KQARALILEALEAVGLPDPEEVLKKY---- 122 (230)
T ss_pred HHHHHHHHHHHcCcc---------H-------------------------HHHHHHHHHHHHHcCCCchHHHHhCC----
Confidence 999997754321100 0 001224677899999973 33443
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
+..|||||||||+||||++.+|++++|||||+|||..+...+.+.|+++++. .+++|+.++|+.+++..++|++++|+
T Consensus 123 -~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiii~sH~~~~~~~~~d~i~~l~ 200 (230)
T TIGR02770 123 -PFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL-FGTGILLITHDLGVVARIADEVAVMD 200 (230)
T ss_pred -hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999998653 35667778899999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|+++..|+.+++.
T Consensus 201 ~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 201 DGRIVERGTVKEIF 214 (230)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=316.81 Aligned_cols=201 Identities=26% Similarity=0.320 Sum_probs=166.3
Q ss_pred eecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHH
Q 000562 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1419)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1419)
|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 58999999999999999999999999999999998775 9999999998765332 248999999888999999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChH
Q 000562 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1419)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1419)
.++....... .+ . .+....++.+++.+||++..++.++ .||||
T Consensus 76 ~~~~~~~~~~--~~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--LS------K------------------------SERRAIVEEHIALVGLTEAADKRPG-----QLSGG 118 (230)
T ss_pred HHHHHhcccC--CC------H------------------------HHHHHHHHHHHHHcCCHHHHcCChh-----hCCHH
Confidence 8753210000 00 0 0012235678899999877776654 59999
Q ss_pred HhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEc
Q 000562 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1419)
Q Consensus 311 qkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 390 (1419)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEH-RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 9999999999999999999999999999999999999999887543 456777889999999999999999999999988
Q ss_pred Chhh
Q 000562 391 PRVS 394 (1419)
Q Consensus 391 ~~~~ 394 (1419)
+..+
T Consensus 198 ~~~~ 201 (230)
T TIGR01184 198 QILE 201 (230)
T ss_pred Ccee
Confidence 6544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=318.56 Aligned_cols=211 Identities=24% Similarity=0.353 Sum_probs=172.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 36999999999999999999999999999999999998775 9999999988754432 2469999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++..... ..+...... ...+....++++++.+||++..++.++
T Consensus 92 ~tv~~nl~~~~~~~~--~~~~~~~~~------------------------~~~~~~~~~~~~l~~~~l~~~~~~~~~--- 142 (242)
T TIGR03411 92 LTVFENLELALPRDK--SVFASLFFR------------------------LSAEEKDRIEEVLETIGLADEADRLAG--- 142 (242)
T ss_pred CCHHHHHHHhhhccc--ccccccccc------------------------cHHHHHHHHHHHHHHcCCchhhcCChh---
Confidence 999999988543110 000000000 000112346788999999877666554
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.++||+|++|++
T Consensus 143 --~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 143 --LLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--K-HSVVVVEHDMEFVRSIADKVTVLHQ 217 (242)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--C-CEEEEEECCHHHHHHhCCEEEEEEC
Confidence 5999999999999999999999999999999999999999999999864 3 5677788999999999999999999
Q ss_pred CeEEEEcChhhH
Q 000562 384 GQIVYQGPRVSV 395 (1419)
Q Consensus 384 G~iv~~G~~~~~ 395 (1419)
|+++++|+.+++
T Consensus 218 g~~~~~~~~~~~ 229 (242)
T TIGR03411 218 GSVLAEGSLDQV 229 (242)
T ss_pred CeEEeeCCHHHH
Confidence 999999987765
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=323.52 Aligned_cols=207 Identities=27% Similarity=0.356 Sum_probs=170.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCC-CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 224 (1419)
++|+|+|++|++||+++|+||||||||||+++|+|.+++....+|+|.++|.++.... .++.++|++|++. .++..
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 100 (282)
T PRK13640 21 PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA 100 (282)
T ss_pred cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccC
Confidence 5999999999999999999999999999999999999775222499999999876432 2357999999974 57789
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.|.....+.. . .+...+++.+++.+||++..++.+
T Consensus 101 tv~enl~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~~L~~~~~~~~----- 141 (282)
T PRK13640 101 TVGDDVAFGLENRAVP----------R------------------------PEMIKIVRDVLADVGMLDYIDSEP----- 141 (282)
T ss_pred CHHHHHHhhHHhCCCC----------H------------------------HHHHHHHHHHHHHCCChhHhcCCc-----
Confidence 9999998754322100 0 011224677899999987666554
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+..++ ..+|++++|++|
T Consensus 142 ~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~-g~tvli~tH~~~~~-~~~d~i~~l~~G 219 (282)
T PRK13640 142 ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKN-NLTVISITHDIDEA-NMADQVLVLDDG 219 (282)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHH-HhCCEEEEEECC
Confidence 5699999999999999999999999999999999999999999999987532 45666678888887 579999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+++++.
T Consensus 220 ~i~~~g~~~~~~ 231 (282)
T PRK13640 220 KLLAQGSPVEIF 231 (282)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=322.80 Aligned_cols=206 Identities=23% Similarity=0.290 Sum_probs=166.3
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--c-eEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ . +.+|+|.++|.++.. ...++.+||++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 4699999999999999999999999999999999997541 1 147999999987632 2345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++. |++||+.+....+.. ...++..+.++++++.+++.+....... ....+||||||||++||++|+.+|++++||
T Consensus 105 ~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLH-TQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred ccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 875 999999886543211 1223334567788999888532111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 238 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFYM-GELVECNDT 238 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999865 799999999986 56788999999985 899999885
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=327.04 Aligned_cols=202 Identities=23% Similarity=0.299 Sum_probs=169.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCce-EEEEEEECCccCCc---ccccceEEEEccCCC-CCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI-IEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPG 916 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~-~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~ 916 (1419)
+.+|+|||++|++||++||+||||||||||+++|+|..++.. ..|+|.++|.+... ...++.+||++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 459999999999999999999999999999999999865211 13899999988643 234567999999974 5678
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
.||+|++.|....+ ....++..+.++++++.++|.+..+..+ +.||||||||++||++|+.+|++|+|||||
T Consensus 100 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS~G~~qrv~laral~~~P~llllDEPt 171 (282)
T PRK13640 100 ATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANLSGGQKQRVAIAGILAVEPKIIILDEST 171 (282)
T ss_pred CCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 89999998764322 2234445567889999999988776653 589999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|||+.++..+.+.|++++++ |+|||+++|+++. + +.+|++++|++ |++++.|+.
T Consensus 172 ~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 227 (282)
T PRK13640 172 SMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDD-GKLLAQGSP 227 (282)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999865 8999999999863 4 57999999985 799999985
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=321.45 Aligned_cols=203 Identities=23% Similarity=0.274 Sum_probs=167.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..++. +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 16 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 16 EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 356999999999999999999999999999999999975421 257999999987632 133567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++ .|++||+.|....... ....+..++++++++.+++.+ ..+. .+..||+|||||++||++|+.+|+
T Consensus 96 ~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~ 167 (251)
T PRK14270 96 PFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKK-----SALKLSGGQQQRLCIARTIAVKPD 167 (251)
T ss_pred cCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhC-----CcccCCHHHHHHHHHHHHHhcCCC
Confidence 887 8999999887543311 122333456788899998742 2222 245899999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 168 llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (251)
T PRK14270 168 VILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFLM-GDLIEFNKT 230 (251)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEEC-CeEEEeCCH
Confidence 9999999999999999999999999876 699999999986 56788999999985 799999885
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=357.75 Aligned_cols=200 Identities=28% Similarity=0.449 Sum_probs=164.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|. .|
T Consensus 354 ~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~t 429 (574)
T PRK11160 354 PVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-AT 429 (574)
T ss_pred cceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-cc
Confidence 5999999999999999999999999999999999999876 9999999999887654 467999999998665 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCC------cccccccc
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL------DTCADTLV 299 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL------~~~~dt~v 299 (1419)
++|||.++.. ....+ .+.+.++..|+ ++..||.|
T Consensus 430 i~~Ni~~~~~----~~~~~------------------------------------~i~~al~~~~l~~~i~~p~GldT~v 469 (574)
T PRK11160 430 LRDNLLLAAP----NASDE------------------------------------ALIEVLQQVGLEKLLEDDKGLNAWL 469 (574)
T ss_pred HHHHhhcCCC----ccCHH------------------------------------HHHHHHHHcCCHHHHcCccccCchh
Confidence 9999987531 00000 11222233332 56789999
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
|+. .+.||||||||++||||++++|++++||||||+||+.++..|.+.|++..+ ++|+|+ ++|..+.+ ..+|+|+
T Consensus 470 ge~-g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tvii-itHr~~~~-~~~d~i~ 544 (574)
T PRK11160 470 GEG-GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLM-ITHRLTGL-EQFDRIC 544 (574)
T ss_pred cCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEE-EecChhHH-HhCCEEE
Confidence 975 567999999999999999999999999999999999999999999998753 445554 66665555 5699999
Q ss_pred EEcCCeEEEEcChhhHHH
Q 000562 380 LLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~~ 397 (1419)
+|++|++++.|+++++.+
T Consensus 545 ~l~~G~i~~~g~~~~l~~ 562 (574)
T PRK11160 545 VMDNGQIIEQGTHQELLA 562 (574)
T ss_pred EEeCCeEEEeCCHHHHHh
Confidence 999999999999998864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.52 Aligned_cols=207 Identities=23% Similarity=0.313 Sum_probs=170.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCC--C
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQD--W 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 219 (1419)
+.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++ .
T Consensus 24 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 100 (265)
T TIGR02769 24 APVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSA 100 (265)
T ss_pred eEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhhh
Confidence 46999999999999999999999999999999999998775 999999999876432 235699999996 4
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
+.+.+||+||+.+....... .. .......++.+++.+||+ ...+..
T Consensus 101 ~~~~~tv~~~l~~~~~~~~~---~~------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~ 147 (265)
T TIGR02769 101 VNPRMTVRQIIGEPLRHLTS---LD------------------------------ESEQKARIAELLDMVGLRSEDADKL 147 (265)
T ss_pred cCCCCCHHHHHHHHHHHhcC---CC------------------------------HHHHHHHHHHHHHHcCCChhhhhCC
Confidence 56789999999765321100 00 000122467788999996 555554
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+...+.+++|++
T Consensus 148 ~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tiiivsH~~~~~~~~~d~i 221 (265)
T TIGR02769 148 P-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAF-GTAYLFITHDLRLVQSFCQRV 221 (265)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CcEEEEEeCCHHHHHHHhcEE
Confidence 4 4699999999999999999999999999999999999999999999987532 466777889999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 222 AVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEeCCEEEEECCHHHHc
Confidence 999999999999988764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=314.11 Aligned_cols=197 Identities=26% Similarity=0.360 Sum_probs=167.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
.++|+|+|+.+++||+++|+|||||||||||++|+|.++|. +|+|.++|+++.... .+.++|++|++.+++.+|++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 36999999999999999999999999999999999998775 999999998765322 35799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.+.....+. .+..+..+++.+||++..|..++ .|
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~-----~L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKAK-----QF 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhHh-----hC
Confidence 999875432110 01135667889999877666554 59
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 387 (1419)
|||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++. +.+|+.++|+..++.+.+|++++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ--GITVILSSHILSEVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHhcCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998642 456667888889999999999999999999
Q ss_pred EEcChh
Q 000562 388 YQGPRV 393 (1419)
Q Consensus 388 ~~G~~~ 393 (1419)
+.|++.
T Consensus 204 ~~~~~~ 209 (223)
T TIGR03740 204 YQGKIN 209 (223)
T ss_pred EecChh
Confidence 999764
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=326.37 Aligned_cols=205 Identities=19% Similarity=0.305 Sum_probs=167.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCC----C----CCCceEEEEccCCC-
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----F----VPPRTSAYVSQQDW- 219 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~- 219 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++.. . ..++.++|++|++.
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~ 101 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEY 101 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcch
Confidence 5999999999999999999999999999999999998775 8999999987642 1 12457999999973
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
.+...||+||+.|+....+.. . . +....++.+++.+||+ +..++.
T Consensus 102 ~~~~~tv~enl~~~~~~~~~~--~--------~------------------------~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 102 QLFQETIEKDIAFGPVNLGEN--K--------Q------------------------EAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred hhhhhHHHHHHHHHHHHcCCC--H--------H------------------------HHHHHHHHHHHHcCCChhHhcCC
Confidence 233469999998854321100 0 0 0112356778899995 455554
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+++|++
T Consensus 148 ~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tiiiisH~~~~~~~~~d~i 221 (289)
T PRK13645 148 P-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKE-YKKRIIMVTHNMDQVLRIADEV 221 (289)
T ss_pred h-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999988753 2566777889999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 222 ~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 222 IVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999987763
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=334.68 Aligned_cols=199 Identities=28% Similarity=0.470 Sum_probs=170.3
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-------CCCceEEEEccCCCCCCCCC
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 225 (1419)
|+|+.+++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++++|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999998875 99999999887532 12467999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.|+.+... . . +....++++++.+||++..|+.++
T Consensus 92 v~enl~~~~~~~~--~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~~----- 130 (354)
T TIGR02142 92 VRGNLRYGMKRAR--P----------S------------------------ERRISFERVIELLGIGHLLGRLPG----- 130 (354)
T ss_pred HHHHHHHHhhccC--h----------h------------------------HHHHHHHHHHHHcCChhHhcCChh-----
Confidence 9999988643110 0 0 012236778999999887776654
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+..++..++|+|++|++|+
T Consensus 131 ~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~-g~tiiivtH~~~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEF-GIPILYVSHSLQEVLRLADRVVVLEDGR 209 (354)
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 699999999999999999999999999999999999999999999987643 4567778899999999999999999999
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
++..|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999988764
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=315.46 Aligned_cols=195 Identities=23% Similarity=0.319 Sum_probs=164.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC------CCceEEEEccCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~~ 222 (1419)
++|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++
T Consensus 16 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 5999999999999999999999999999999999998775 999999999875432 2357999999998888
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
.+||+||+.+.....+.. . ++....++.+++.+||++..++.+
T Consensus 93 ~~tv~~~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~--- 135 (222)
T PRK10908 93 DRTVYDNVAIPLIIAGAS--G--------------------------------DDIRRRVSAALDKVGLLDKAKNFP--- 135 (222)
T ss_pred cccHHHHHHhHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCChhhhhCCc---
Confidence 999999998764322110 0 001123567788999987666554
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
..|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+. +++++.++|+..++.+.+|+|++|+
T Consensus 136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~ 211 (222)
T PRK10908 136 --IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV--GVTVLMATHDIGLISRRSYRMLTLS 211 (222)
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 469999999999999999999999999999999999999999999998653 4667778999999999999999999
Q ss_pred CCeEE
Q 000562 383 EGQIV 387 (1419)
Q Consensus 383 ~G~iv 387 (1419)
+|+++
T Consensus 212 ~G~i~ 216 (222)
T PRK10908 212 DGHLH 216 (222)
T ss_pred CCEEc
Confidence 99985
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.82 Aligned_cols=206 Identities=29% Similarity=0.477 Sum_probs=171.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
..+|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 35999999999999999999999999999999999998775 9999999987754322 35689999998877889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++....... . ......++.+++.+||++..++.++
T Consensus 92 tv~e~l~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 133 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS--R--------------------------------AEDDALVAAALAQVDLAHLAGRDYP---- 133 (258)
T ss_pred CHHHHHHhhhcccCCC--c--------------------------------HHHHHHHHHHHHHcCCHhHhcCCcc----
Confidence 9999998753211100 0 0011235678899999876676654
Q ss_pred CCCChHHhHHHHHHHHHh------CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 305 KGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~------~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
.|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|+|
T Consensus 134 -~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i 211 (258)
T PRK13548 134 -QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHER-GLAVIVVLHDLNLAARYADRI 211 (258)
T ss_pred -cCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhcCEE
Confidence 59999999999999999 5999999999999999999999999999987333 456777889999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999887653
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.43 Aligned_cols=206 Identities=24% Similarity=0.298 Sum_probs=164.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC--C-ceEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|... + .+.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 469999999999999999999999999999999999632 1 1247999999987532 2345679999999887
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .||+||+.+....+. . ...+..++.++++++.+++.+...... ...+..||||||||++||++|+.+|++|+||
T Consensus 98 ~~-~tv~enl~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKG-I-KDKQVLDEAVEKSLKGASIWDEVKDRL-HDSALGLSGGQQQRVCIARVLATSPKIILLD 173 (252)
T ss_pred Cc-CcHHHHHHHHHHHcC-C-CcHHHHHHHHHHHHHHcCCchhHHHHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 76 899999988654321 1 112233456778888888743111111 1124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 174 EPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T PRK14239 174 EPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFLD-GDLIEYNDT 231 (252)
T ss_pred CCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999865 699999999976 57788999999985 799999875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=367.89 Aligned_cols=206 Identities=24% Similarity=0.367 Sum_probs=162.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||+++++... ++.++||+|++.+| +.
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF-~g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLF-SG 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCcccc-cc
Confidence 46999999999999999999999999999999999999886 9999999999887654 47899999999866 56
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++|||.++... ...+.+.++ .+... .+..++ .|++..||.+|+. .
T Consensus 570 TIreNI~~g~~~----~~~e~i~~a------------------l~~a~---------l~~~i~--~lp~GldT~ige~-G 615 (711)
T TIGR00958 570 SVRENIAYGLTD----TPDEEIMAA------------------AKAAN---------AHDFIM--EFPNGYDTEVGEK-G 615 (711)
T ss_pred CHHHHHhcCCCC----CCHHHHHHH------------------HHHcC---------CHHHHH--hCCCccCCcccCC-C
Confidence 999999875321 000111111 11100 011111 3567789999965 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.+||||||||++||||++++|+|++||||||+||+.+...|.+ ... . .++|++.++|..+. .+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~-~~~TvIiItHrl~~-i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---R-ASRTVLLIAHRLST-VERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---c-CCCeEEEEeccHHH-HHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999999888 221 2 24455557777654 5779999999999
Q ss_pred eEEEEcChhhHHH
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1419)
+++++|+++++.+
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999864
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=372.00 Aligned_cols=206 Identities=25% Similarity=0.335 Sum_probs=164.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|. +|+|.+||+++++... ++.++||+|++.+| +.
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf-~g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLF-EG 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhh-hc
Confidence 36999999999999999999999999999999999999886 9999999999877653 57899999999866 56
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++|||.++.. ....+.+.+++ +... .++. .-.|++..||.+|+. .
T Consensus 568 Ti~eNi~l~~~----~~~~~~i~~al------------------~~~~---------l~~~--i~~lp~gl~t~i~e~-G 613 (710)
T TIGR03796 568 TVRDNLTLWDP----TIPDADLVRAC------------------KDAA---------IHDV--ITSRPGGYDAELAEG-G 613 (710)
T ss_pred cHHHHhhCCCC----CCCHHHHHHHH------------------HHhC---------CHHH--HHhCcCcccceeccC-C
Confidence 99999987421 11111111111 1000 1111 123667889999965 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.+||||||||++||||++++|++++||||||+||+.++.+|.+.|++ .++| +|.++|..+. ...+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T-~IiitHrl~~-i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCT-CIIVAHRLST-IRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCE-EEEEecCHHH-HHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999985 2445 4446666554 4669999999999
Q ss_pred eEEEEcChhhHHH
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1419)
+++..|+++++.+
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999864
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=320.44 Aligned_cols=205 Identities=23% Similarity=0.316 Sum_probs=171.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC----------------CCceEE
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----------------PPRTSA 212 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~----------------~~~~~~ 212 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+.+. +|+|.++|.++.... .++.++
T Consensus 14 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 14 TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 6999999999999999999999999999999999998775 999999998775321 145799
Q ss_pred EEccCCCCCCCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCC
Q 000562 213 YVSQQDWQVAEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291 (1419)
Q Consensus 213 yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL 291 (1419)
|++|++.+++.+||.||+.++... .+.. . .+....++++++.+||
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~~~~-------~---------------------------~~~~~~~~~~l~~~gl 136 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVLGMA-------R---------------------------AEAEKRAMELLDMVGL 136 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhcCCC-------H---------------------------HHHHHHHHHHHHHcCC
Confidence 999999889999999999875321 0000 0 0011235678899999
Q ss_pred cccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHH
Q 000562 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1419)
Q Consensus 292 ~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~ 371 (1419)
++..+..+ +.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++++.++|+..++
T Consensus 137 ~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~-~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 137 ADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE-HDLTMLLVTHEMGFA 210 (252)
T ss_pred hhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHH
Confidence 87666544 469999999999999999999999999999999999999999999988753 356777788999999
Q ss_pred HhhcCeEEEEcCCeEEEEcChhhHH
Q 000562 372 YELFDDVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 372 ~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1419)
.+++|++++|++|++++.|+.+++.
T Consensus 211 ~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 211 REFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999999887763
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=318.85 Aligned_cols=212 Identities=24% Similarity=0.303 Sum_probs=170.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~ 223 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+++. .+.+|+|.++|.++.... .++.++|++|++.+++.
T Consensus 17 ~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 5999999999999999999999999999999999998642 235999999999875432 24679999999988899
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++.+....... . .+....++++++.+||.+..+... +..
T Consensus 97 ~tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 143 (250)
T PRK14247 97 LSIFENVALGLKLNRLVKS--------K------------------------KELQERVRWALEKAQLWDEVKDRL-DAP 143 (250)
T ss_pred CcHHHHHHHHHHhccccCC--------H------------------------HHHHHHHHHHHHHcCCCcchhhhh-cCC
Confidence 9999999886432210000 0 001223567888889854211111 233
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
+..|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++.+ +++++.++|+..++.+.+|++++|++
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~i~~l~~ 220 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK---DMTIVLVTHFPQQAARISDYVAFLYK 220 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEEEC
Confidence 457999999999999999999999999999999999999999999998853 35677788999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|++++.|+.+++.
T Consensus 221 G~i~~~g~~~~~~ 233 (250)
T PRK14247 221 GQIVEWGPTREVF 233 (250)
T ss_pred CeEEEECCHHHHH
Confidence 9999999988763
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=317.85 Aligned_cols=211 Identities=22% Similarity=0.272 Sum_probs=169.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCCC-----CCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|.++.... .++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35999999999999999999999999999999999998642 245999999999875321 24579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++ .||+||+.++....+... + +.....++++++.+||.+..++..
T Consensus 113 ~~-~tv~eni~~~~~~~~~~~--~-------------------------------~~~~~~~~~~l~~~~l~~~i~~~~- 157 (267)
T PRK14237 113 FA-KSIYENITFALERAGVKD--K-------------------------------KVLDEIVETSLKQAALWDQVKDDL- 157 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCCC--H-------------------------------HHHHHHHHHHHHHcCCCchhhhhh-
Confidence 76 699999988643211000 0 001123566788888864322222
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+...+.||||||||++|||+++.+|++++|||||+|||+.++.++.+.|+++.+ +++|+.++|+.+++.++||++++
T Consensus 158 ~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~ 234 (267)
T PRK14237 158 HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK---NYTIIIVTHNMQQAARASDYTAF 234 (267)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEecCHHHHHHhcCEEEE
Confidence 245567999999999999999999999999999999999999999999998843 35677788999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|++++.|+.+++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 235 FYLGDLIEYDKTRNIF 250 (267)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988763
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=313.20 Aligned_cols=194 Identities=31% Similarity=0.447 Sum_probs=161.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCC-CCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 223 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999998775 9999999988754321 357899999974 4678
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++....+... .+....++.+++.+||++..++.+
T Consensus 91 ~t~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~---- 132 (211)
T cd03225 91 PTVEEEVAFGLENLGLPE----------------------------------EEIEERVEEALELVGLEGLRDRSP---- 132 (211)
T ss_pred CcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCcHhhhcCCc----
Confidence 999999987543211000 001123567888999987666555
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|+|++|++
T Consensus 133 -~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~--~~tvi~~sH~~~~~~~~~d~i~~l~~ 209 (211)
T cd03225 133 -FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE--GKTIIIVTHDLDLLLELADRVIVLED 209 (211)
T ss_pred -ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999998753 46677788999999999999999999
Q ss_pred Ce
Q 000562 384 GQ 385 (1419)
Q Consensus 384 G~ 385 (1419)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=321.34 Aligned_cols=205 Identities=22% Similarity=0.272 Sum_probs=169.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC----------------CCCceE
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------------VPPRTS 211 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 211 (1419)
+++|+|+|+.+++|++++|+||||||||||+++|+|.+++. +|+|.++|.++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 36999999999999999999999999999999999998765 89999999876421 113579
Q ss_pred EEEccCCCCCCCCCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhC
Q 000562 212 AYVSQQDWQVAEMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1419)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lg 290 (1419)
+|++|++.+++.+||+||+.++.. ..... . .+....+.++++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~-------~---------------------------~~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-------K---------------------------QEARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC-------H---------------------------HHHHHHHHHHHHHcC
Confidence 999999998989999999987532 11000 0 001223567889999
Q ss_pred Ccccc-cccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh
Q 000562 291 LDTCA-DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1419)
Q Consensus 291 L~~~~-dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~ 369 (1419)
|++.. +. ..+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++. +.+|+.++|+..
T Consensus 141 l~~~~~~~-----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~--g~tiiivsH~~~ 213 (257)
T PRK10619 141 IDERAQGK-----YPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 213 (257)
T ss_pred CChhhhhC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHH
Confidence 97643 43 34579999999999999999999999999999999999999999999998652 566677889999
Q ss_pred HHHhhcCeEEEEcCCeEEEEcChhhHH
Q 000562 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 370 ~~~~~~D~vilL~~G~iv~~G~~~~~~ 396 (1419)
++.++||+|++|++|++++.|+.+++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 999999999999999999999987763
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=317.25 Aligned_cols=213 Identities=22% Similarity=0.279 Sum_probs=169.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCc--CCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1419)
.++|+|+|+.+++|++++|+|||||||||||++|+|.+ ++ .+|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV---TSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CcceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 36999999999999999999999999999999999985 34 49999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc-ccccccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVG 300 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg 300 (1419)
+.+|++|++.+.......... .... ...+....++.+++.+||++ ..++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~------------------~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARG------------------EEPL---------DLLDFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccc------------------cccc---------cHHHHHHHHHHHHHHcCCchhhcccccc
Confidence 999999999875432110000 0000 00011234678899999973 4555443
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhh-cCeEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVI 379 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~-~D~vi 379 (1419)
..|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .+++|+.++|+..++... +|+++
T Consensus 143 ----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~vsH~~~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 ----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE--PDRSFLIITHYQRLLNYIKPDYVH 216 (243)
T ss_pred ----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCcEEEEEEecHHHHHhhcCCeEE
Confidence 14999999999999999999999999999999999999999999999864 245677788999999888 89999
Q ss_pred EEcCCeEEEEcChhhHH
Q 000562 380 LLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~~ 396 (1419)
+|++|++++.|+.+++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999987553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=319.92 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=165.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+|+|++|++||+++|+|+||||||||+++|+|..+.. +.+|+|.++|.+... ...++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14240 16 FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNP 95 (250)
T ss_pred ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCcc
Confidence 46999999999999999999999999999999999964311 258999999987642 2345679999999887
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .|++||+.+....+.. ...++.++.++++++.+++.+....... ..+..||||||||++|||+|+.+|++++||
T Consensus 96 ~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 96 FP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLK-KSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred Cc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHh-cCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 77 8999999987543311 1223344567888888887421111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++. +++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (250)
T PRK14240 172 EPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFLN-GEIVEFGDT 229 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999985 4899999999975 46778999999986 799988874
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=354.63 Aligned_cols=207 Identities=27% Similarity=0.330 Sum_probs=173.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++.+++.
T Consensus 17 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 17 PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE--PTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC--CCccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 4579999999999999999999999999999999999875 4589999999876431 123569999999988999
Q ss_pred ccHHHHHHHHhhhc----CCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 917 LTVLESLLFSAWLR----LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 917 lTv~E~l~f~a~lr----~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+||+|++.++.... ........+.++.++++++.+++.+..+..+ ++|||||||||+||++|+.+|+||+|
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~lllL 169 (510)
T PRK09700 95 LTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----ANLSISHKQMLEIAKTLMLDAKVIIM 169 (510)
T ss_pred CcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999998753211 0000122334466889999999987777654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
||||+|||+.++..+++.|++++++|+|||+++|+++ .+...+|++++|++ |++++.|+..+
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 231 (510)
T PRK09700 170 DEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GSSVCSGMVSD 231 (510)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEeeecchhh
Confidence 9999999999999999999999888999999999976 46678999999985 79999998754
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=319.58 Aligned_cols=221 Identities=20% Similarity=0.271 Sum_probs=173.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1419)
.++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... +..++|++|++.++++
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 36999999999999999999999999999999999998775 9999999998765332 2358999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
+||+||+.++........ ..... .+. + ..+ ....+....++.+++.+||++..++.++
T Consensus 95 ~tv~enl~~~~~~~~~~~---~~~~~------~~~-~--~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~--- 152 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTG---LFSGL------LKT-P--AFR-------RAESEALDRAATWLERVGLLEHANRQAG--- 152 (255)
T ss_pred CcHHHHHHHhhhccccch---hhhhh------ccc-c--ccc-------cchhHHHHHHHHHHHhCChhhhhhCChh---
Confidence 999999998643110000 00000 000 0 000 0000112346778899999876666554
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++. .+++|+.++|+..++.+++|++++|++
T Consensus 153 --~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~-~~~tii~~sH~~~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 153 --NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNE-HNVTVLLIEHDMKLVMGISDRIYVVNQ 229 (255)
T ss_pred --hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhh-cCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 69999999999999999999999999999999999999999999998653 246677788999999999999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999987753
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=319.88 Aligned_cols=207 Identities=24% Similarity=0.265 Sum_probs=166.2
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCC----cccccceEEEEccCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKR----QETFARISGYCEQNDIH 913 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~d~~ 913 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+.. +.+|+|.++|.++. ....++.++|++|++.+
T Consensus 15 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~ 94 (249)
T PRK14253 15 ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP 94 (249)
T ss_pred CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCc
Confidence 356999999999999999999999999999999999975521 35899999998753 12345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .||+||+.+...... ........+.+.+.++.+++.+....... .....||||||||++||++|+.+|++++||
T Consensus 95 ~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 95 FP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred Cc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 87 899999987643321 11122334557778888887532111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 171 EP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 228 (249)
T PRK14253 171 EPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GELVEHDDT 228 (249)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999875 699999999986 57778999999985 799998874
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=323.62 Aligned_cols=205 Identities=24% Similarity=0.352 Sum_probs=171.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCC-CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1419)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 4999999999999999999999999999999999998876 9999999988754322 356899999963 34568
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++....+... .+....++++++.+||.+..++.++
T Consensus 95 tv~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (277)
T PRK13652 95 TVEQDIAFGPINLGLDE----------------------------------ETVAHRVSSALHMLGLEELRDRVPH---- 136 (277)
T ss_pred cHHHHHHhHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCChhHhcCCcc----
Confidence 99999987543211100 0012246788999999887776654
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+. .+++|+.++|+.+++.+.+|+|++|++|
T Consensus 137 -~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~-~g~tvli~tH~~~~~~~~~drv~~l~~G 214 (277)
T PRK13652 137 -HLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPET-YGMTVIFSTHQLDLVPEMADYIYVMDKG 214 (277)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 69999999999999999999999999999999999999999999998763 2466777889999999999999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999988874
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=321.21 Aligned_cols=203 Identities=23% Similarity=0.282 Sum_probs=167.4
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc-e--EEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG-I--IEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~-~--~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
..+|+|+|+++++||+++|+|+||||||||+++|+|..+.. + .+|+|.++|.+... ...++.++|++|++.+
T Consensus 20 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 99 (259)
T PRK14260 20 SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNP 99 (259)
T ss_pred eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEeccccc
Confidence 46999999999999999999999999999999999975421 2 47999999987532 2345679999999988
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
++ .|++||+.+....+.. ....+..+.++++++.+++.+ ..+. .+..||||||||++|||+|+.+|++
T Consensus 100 ~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LS~G~~qrv~laral~~~p~l 171 (259)
T PRK14260 100 FP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNK-----SALGLSGGQQQRLCIARALAIKPKV 171 (259)
T ss_pred CC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcC-----CcccCCHHHHHHHHHHHHHhcCCCE
Confidence 87 8999999886543321 122333456778889888842 2332 2457999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEec----CCEEEEeCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR----GGELIYAGPL 1054 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~----gG~~~~~G~~ 1054 (1419)
++|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ .|++++.|+.
T Consensus 172 llLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 172 LLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFSTDESRIGQMVEFGVT 238 (259)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEeccCCCCceEEEeCCH
Confidence 999999999999999999999999865 699999999986 57788999999973 4899999985
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.77 Aligned_cols=207 Identities=28% Similarity=0.363 Sum_probs=167.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|..... +.+|+|.++|.+... ...++.++|++|++.
T Consensus 15 ~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 15 EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 356999999999999999999999999999999999975421 258999999987532 234567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++ .|++|++.+....... ...+..++.+++.++.+++.+..+... ...+.+||||||||++||++|+.+|++++|
T Consensus 95 ~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~Gq~qr~~la~al~~~p~llll 170 (250)
T PRK14262 95 PFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTRLSGGQQQRLCIARALAVEPEVILL 170 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhhcCHHHHHHHHHHHHHhCCCCEEEE
Confidence 877 8999999886543211 122233455788888888854211111 122458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 171 DEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14262 171 DEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GELIEYGPT 229 (250)
T ss_pred eCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999865 799999999976 47788999999986 799988875
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=321.59 Aligned_cols=204 Identities=27% Similarity=0.370 Sum_probs=169.9
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-----CCceEEEEccCCC-CCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 222 (1419)
++|+|+|++|++||+++|+||||||||||+++|+|.+++. +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 16 ~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (275)
T PRK13639 16 EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLF 92 (275)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhhc
Confidence 5999999999999999999999999999999999998775 999999999874211 1357999999962 344
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
..||+||+.++....+.. +. +....+..+++.+||++..++.++
T Consensus 93 ~~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~-- 136 (275)
T PRK13639 93 APTVEEDVAFGPLNLGLS----------KE------------------------EVEKRVKEALKAVGMEGFENKPPH-- 136 (275)
T ss_pred cccHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCchhhcCChh--
Confidence 579999998753211100 00 011236678999999887776654
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.||||||||++|||+++.+|++++|||||+|||+.++.++.+.|+++++. +++|+.++|+..++.++||++++|+
T Consensus 137 ---~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~--~~til~vtH~~~~~~~~~d~i~~l~ 211 (275)
T PRK13639 137 ---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE--GITIIISTHDVDLVPVYADKVYVMS 211 (275)
T ss_pred ---hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 59999999999999999999999999999999999999999999998753 5667778999999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|++++.|+++++.
T Consensus 212 ~G~i~~~g~~~~~~ 225 (275)
T PRK13639 212 DGKIIKEGTPKEVF 225 (275)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999988764
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=323.03 Aligned_cols=200 Identities=26% Similarity=0.315 Sum_probs=169.8
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCC-CCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~-~~~~l 917 (1419)
..+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++. .++..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~ 97 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA 97 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccC
Confidence 359999999999999999999999999999999999876 568999999987643 234567999999974 56778
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
||.||+.+..... ....++..+.++++++.++|.+..++. +..||||||||++|||+|+.+|++|+|||||+
T Consensus 98 tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~lAraL~~~p~llllDEPt~ 169 (277)
T PRK13642 98 TVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSGGQKQRVAVAGIIALRPEIIILDESTS 169 (277)
T ss_pred CHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 9999998765432 122333445678999999998776664 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 998 GLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+.++..+.+.|++++++ |+|||+++|+++. + ..+|++++|++ |+++..|+.
T Consensus 170 ~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~-~~~d~i~~l~~-G~i~~~g~~ 224 (277)
T PRK13642 170 MLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-A-ASSDRILVMKA-GEIIKEAAP 224 (277)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999875 9999999999763 4 46999999986 789988875
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=313.34 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=166.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCCCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d~~~~ 915 (1419)
+.+|+|+|+++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 579999999999999999999999999999999999865 568999999987532 124567999999998888
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|+.||+.+...... ....++..+.++++++.+++.+..+..+ +.||+|||||++||++|+.+|++++||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 8999999998654321 1233444567889999999987766653 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEE
Q 000562 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~ 1048 (1419)
|+|||+.++..+.+.|+++.+ .|+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999975 4578999999985 554
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=314.52 Aligned_cols=200 Identities=28% Similarity=0.432 Sum_probs=161.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCC--CCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 225 (1419)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++. ..++.++|++|++.+. +.+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHH--HHHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999998775 999999998764 2346799999997653 3489
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+||+.++..... ..+.... ......++.+++.+||++..++.++
T Consensus 87 v~e~l~~~~~~~~--~~~~~~~----------------------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 131 (213)
T cd03235 87 VRDVVLMGLYGHK--GLFRRLS----------------------------KADKAKVDEALERVGLSELADRQIG----- 131 (213)
T ss_pred HHHHHHhcccccc--ccccCCC----------------------------HHHHHHHHHHHHHcCCHHHHhCCcc-----
Confidence 9999987532110 0000000 0012246778899999876666554
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+++++.++|+..++.+++|++++|++|
T Consensus 132 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~~tvi~~sH~~~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 132 ELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR--EGMTILVVTHDLGLVLEYFDRVLLLNRT- 208 (213)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCEEEEEeCCHHHHHHhcCEEEEEcCc-
Confidence 5999999999999999999999999999999999999999999999875 2566777889999999999999999886
Q ss_pred EEEEc
Q 000562 386 IVYQG 390 (1419)
Q Consensus 386 iv~~G 390 (1419)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=367.44 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=167.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
.++|+|+|++|+|||.++|+||||||||||+++|+|.++|. +|+|.+||+++++... ++.++||+|++.+|. .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35999999999999999999999999999999999999886 9999999999887654 578999999998665 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++|||.++.. ....+.+.+++ +.+. .+..+ -.|++..||.+|+. .
T Consensus 554 TI~eNi~~~~~----~~~~~~i~~a~------------------~~~~---------l~~~i--~~lp~gl~T~i~e~-G 599 (694)
T TIGR03375 554 TLRDNIALGAP----YADDEEILRAA------------------ELAG---------VTEFV--RRHPDGLDMQIGER-G 599 (694)
T ss_pred hHHHHHhCCCC----CCCHHHHHHHH------------------HHcC---------hHHHH--HhCcccccceecCC-C
Confidence 99999987521 00011111111 1100 11111 24677889999975 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.+||||||||++||||++++|++++||||||+||+.++.+|.+.|++..+ ++|+ +.++|..+ ..+.+|+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~-iiItHrl~-~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTL-VLVTHRTS-LLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEE-EEEecCHH-HHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999998753 3454 44666654 45789999999999
Q ss_pred eEEEEcChhhHHH
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1419)
+++++|+++++++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=319.99 Aligned_cols=204 Identities=20% Similarity=0.290 Sum_probs=166.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC--CeeeEEEECCccCCCCC-----CCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|++|++||+++|+|||||||||||++|+|.+++.. +.+|+|.++|+++.... .++.++|++|++.++
T Consensus 26 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 59999999999999999999999999999999999986421 25999999998864321 245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc----ccccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 297 (1419)
+ +||+||+.|+.+..+.. . . +....++++++.+|+. +..++
T Consensus 106 ~-~tv~enl~~~~~~~~~~--~--------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 106 P-MSIYDNVAYGPRIHGAN--K--------K------------------------DLDGVVENALRSAALWDETSDRLKS 150 (258)
T ss_pred c-ccHHHHHHHHHHHcCCC--H--------H------------------------HHHHHHHHHHHHcCCCcchhhhhcC
Confidence 7 89999998864322110 0 0 0012356678888874 23344
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
. .+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+++|+
T Consensus 151 ~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~---~~tiiivsH~~~~~~~~~d~ 222 (258)
T PRK14268 151 P-----ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK---DYTIVIVTHNMQQAARISDY 222 (258)
T ss_pred C-----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh---CCEEEEEECCHHHHHHhCCE
Confidence 3 456999999999999999999999999999999999999999999998853 36677788999999999999
Q ss_pred EEEEcCCeEEEEcChhhH
Q 000562 378 VILLSEGQIVYQGPRVSV 395 (1419)
Q Consensus 378 vilL~~G~iv~~G~~~~~ 395 (1419)
|++|++|++++.|+++++
T Consensus 223 i~~l~~G~i~~~~~~~~~ 240 (258)
T PRK14268 223 TGFFLMGELIEFGQTRQI 240 (258)
T ss_pred EEEEECCEEEEeCCHHHH
Confidence 999999999999998776
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=313.16 Aligned_cols=199 Identities=24% Similarity=0.333 Sum_probs=163.6
Q ss_pred ccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCC
Q 000562 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1419)
Q Consensus 833 ~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~ 912 (1419)
.+.+..++.+.+|+|+|++|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+...
T Consensus 26 ~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~ 94 (224)
T cd03220 26 LGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGG 94 (224)
T ss_pred hhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hccccc
Confidence 344445667789999999999999999999999999999999999866 568999999976421 111233
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+.+.+||+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++++|
T Consensus 95 ~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llll 166 (224)
T cd03220 95 FNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLI 166 (224)
T ss_pred CCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4577999999988654331 122334456788999999987777654 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 167 DEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 167 DEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 9999999999999999999999877899999999976 46678999999985 7887765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=311.27 Aligned_cols=195 Identities=24% Similarity=0.349 Sum_probs=163.9
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHHHHH
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1419)
|+|+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999998775 9999999998755432 367999999999899999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHH
Q 000562 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1419)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1419)
++..... . .. . +.+..++++++.+||++..++.+ ..|||||
T Consensus 93 ~~~~~~~-~--~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 133 (211)
T cd03298 93 LGLSPGL-K--LT---A----------------------------EDRQAIEVALARVGLAGLEKRLP-----GELSGGE 133 (211)
T ss_pred ccccccc-C--cc---H----------------------------HHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHH
Confidence 7532110 0 00 0 01224677899999987777655 4699999
Q ss_pred hHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEc
Q 000562 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1419)
Q Consensus 312 kkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G 390 (1419)
|||++||+|++.+|++++|||||+|||..++..+.+.|+++++.. +.+|+.++|+..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET-KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999986532 456667899999999999999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=320.19 Aligned_cols=207 Identities=22% Similarity=0.271 Sum_probs=169.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--c-eEEEEEEECCccCCc-----ccccceEEEEccCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQND 911 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d 911 (1419)
++..+|+|+|++++|||+++|+|+||||||||+++|+|...+ + +.+|+|.++|.++.. ..+++.++|++|++
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~ 98 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQP 98 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCC
Confidence 456799999999999999999999999999999999997642 1 258999999987532 23456799999998
Q ss_pred CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 912 ~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
.++ .+|++||+.+....+.. ..+..+.++++++.+++.+..+...+ ...+.||||||||++|||||+.+|++|+
T Consensus 99 ~~~-~~tv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 99 NPF-SMSIFDNVAFGLRLNRY----KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred ccc-cccHHHHHHHHHhhcCc----hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 876 59999999987644321 12234567889999998543222221 2346799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe-------cCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-------RGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-------~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|+ ++|+++..|+.
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 999999999999999999999985 4799999999986 4678899999996 35899999985
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=320.21 Aligned_cols=205 Identities=20% Similarity=0.290 Sum_probs=169.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCC-CCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDW-QVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 223 (1419)
..+|+|+|+++++||+++|+|+||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999775 999999998875432 2467999999974 5778
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCcc
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1419)
.||.||+.++....+.. .. +....++.+++.+||.+..++.+
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~---- 138 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------RE------------------------EMIKRVDEALLAVNMLDFKTREP---- 138 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCc----
Confidence 89999998754321110 00 01124677888999987666654
Q ss_pred CCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~ 383 (1419)
..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++. .+|+|++|++
T Consensus 139 -~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~-g~tiil~sH~~~~~~-~~d~i~~l~~ 215 (277)
T PRK13642 139 -ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY-QLTVLSITHDLDEAA-SSDRILVMKA 215 (277)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHH-hCCEEEEEEC
Confidence 4699999999999999999999999999999999999999999999887532 456666888888886 6999999999
Q ss_pred CeEEEEcChhhHH
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1419)
|+++..|+.+++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=327.33 Aligned_cols=220 Identities=23% Similarity=0.305 Sum_probs=174.4
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISG 892 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g 892 (1419)
.+.++|+++.... +...+|+|+|++|++||++||+|+||||||||+++|+|.... .+.+|+|.+||
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 3566666655421 224699999999999999999999999999999999997531 24589999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCc-HHHHHHHHHHHHHHcCCccccCCcccCCCC
Q 000562 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-LETQRAFVEEVMELVELTSLSGALIGLPGI 966 (1419)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~-~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~ 966 (1419)
.++.. ...++.++||+|++.+++ .|++||+.|+.... ... .+...+.++++++.++|.+-.+..++. ..
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~ 223 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLDK-AG 223 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhhC-Cc
Confidence 98742 234678999999988775 79999999864322 112 222234567788888875433333333 34
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCC
Q 000562 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1419)
Q Consensus 967 ~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG 1046 (1419)
..||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+.+.+|++++|++ |
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~-G 300 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQ-G 300 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999875 799999999976 46677999999985 7
Q ss_pred EEEEeCCC
Q 000562 1047 ELIYAGPL 1054 (1419)
Q Consensus 1047 ~~~~~G~~ 1054 (1419)
+++..|++
T Consensus 301 ~i~e~g~~ 308 (329)
T PRK14257 301 WIEEAGET 308 (329)
T ss_pred EEEEeCCH
Confidence 99999986
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.56 Aligned_cols=204 Identities=26% Similarity=0.342 Sum_probs=168.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-----CCceEEEEccCCC-CCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDW-QVA 222 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~~ 222 (1419)
.+|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 15 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 5999999999999999999999999999999999999876 999999999874211 1357999999974 345
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCc
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1419)
..|+.||+.+.....+... .+....++.+++.+||++..++.++
T Consensus 92 ~~~~~~~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 135 (271)
T PRK13638 92 YTDIDSDIAFSLRNLGVPE----------------------------------AEITRRVDEALTLVDAQHFRHQPIQ-- 135 (271)
T ss_pred cccHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCHhHhcCCch--
Confidence 6689999987543221100 0011235678889999877766554
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++.. +++|+.++|+..++.+++|++++|+
T Consensus 136 ---~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--g~tii~vtH~~~~~~~~~d~i~~l~ 210 (271)
T PRK13638 136 ---CLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQ--GNHVIISSHDIDLIYEISDAVYVLR 210 (271)
T ss_pred ---hCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEE
Confidence 69999999999999999999999999999999999999999999998652 4567778899999999999999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~g~~~~~~ 224 (271)
T PRK13638 211 QGQILTHGAPGEVF 224 (271)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999987764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=317.34 Aligned_cols=210 Identities=20% Similarity=0.237 Sum_probs=166.6
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+.|++|++++|+||||||||||+++|+|.++ |..+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999986 2223589999999887421 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.+......... . .+....++++++.+||........ +
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~-~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 151 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS-R--------------------------------AEMDERVEWALTKAALWNEVKDKL-H 151 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC-H--------------------------------HHHHHHHHHHHHHcCCChhhHHHH-h
Confidence 6 899999987643211000 0 001123567788888742111111 1
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.....||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++.. +++|+.++|+..++.+++|++++|
T Consensus 152 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~l 228 (260)
T PRK10744 152 QSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ---DYTVVIVTHNMQQAARCSDYTAFM 228 (260)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998852 356777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 229 ~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 229 YLGELIEFGNTDTIF 243 (260)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987764
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.12 Aligned_cols=216 Identities=22% Similarity=0.302 Sum_probs=173.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC--------CCceEEEEccCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--------PPRTSAYVSQQDW 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 219 (1419)
.++|+|+|+.+++||+++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 35999999999999999999999999999999999998775334799999998764321 1356899999998
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1419)
+++.+||+||+.+...... . . ... ..+.. ..+.+..++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~--~-~------~~~--~~~~~---------------~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGST--P-F------WRT--CFSWF---------------TREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhcccc--c-c------hhh--hcccc---------------cHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 8999999999987532100 0 0 000 00000 0011234678899999987777655
Q ss_pred cCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
+ .|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+..++.+++|+|+
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tvii~tH~~~~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQND-GITVVVTLHQVDYALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEE
Confidence 4 599999999999999999999999999999999999999999999987532 5677778899999999999999
Q ss_pred EEcCCeEEEEcChhhH
Q 000562 380 LLSEGQIVYQGPRVSV 395 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1419)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999987664
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=316.68 Aligned_cols=200 Identities=25% Similarity=0.376 Sum_probs=167.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 225 (1419)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .|
T Consensus 17 ~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (241)
T PRK14250 17 EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GT 92 (241)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-hh
Confidence 5999999999999999999999999999999999998775 999999998875432 2467999999987775 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-ccccccccCccC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEML 304 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~ 304 (1419)
|+||+.++....+ . ....++.+++.+||+ +..++. .
T Consensus 93 v~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~-----~ 129 (241)
T PRK14250 93 VKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRD-----V 129 (241)
T ss_pred HHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCC-----c
Confidence 9999976432110 0 011245678889996 344443 4
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
..|||||||||+||+|++.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+++|+|++|++|
T Consensus 130 ~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tii~~sH~~~~~~~~~d~i~~l~~G 208 (241)
T PRK14250 130 KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKM-NLTVIWITHNMEQAKRIGDYTAFLNKG 208 (241)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeccHHHHHHhCCEEEEEeCC
Confidence 4699999999999999999999999999999999999999999999886532 456777889999999999999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
+++..|+++++.
T Consensus 209 ~i~~~~~~~~~~ 220 (241)
T PRK14250 209 ILVEYAKTYDFF 220 (241)
T ss_pred EEEEeCCHHHHh
Confidence 999999987763
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=318.60 Aligned_cols=203 Identities=26% Similarity=0.311 Sum_probs=168.4
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCC------C---CCCceEEEEccCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------F---VPPRTSAYVSQQDW 219 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d~ 219 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++.. . ..++.++|++|++.
T Consensus 16 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 92 (242)
T PRK11124 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN 92 (242)
T ss_pred eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCcc
Confidence 5999999999999999999999999999999999998775 9999999987631 0 11357999999999
Q ss_pred CCCCCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccc
Q 000562 220 QVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1419)
+++.+||+||+.+.. ...+.. . .+....++.+++.+||+...++.
T Consensus 93 ~~~~~tv~e~i~~~~~~~~~~~----------~------------------------~~~~~~~~~~l~~~gl~~~~~~~ 138 (242)
T PRK11124 93 LWPHLTVQQNLIEAPCRVLGLS----------K------------------------DQALARAEKLLERLRLKPYADRF 138 (242)
T ss_pred ccCCCcHHHHHHHHHHHHcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhhCC
Confidence 899999999997531 111100 0 00112367788999998766665
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.|||||||||+||||++.+|++++|||||+|||..++..+.+.|+++.. . +++++.++|+..++.+++|++
T Consensus 139 ~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~-~~tii~~sh~~~~~~~~~d~i 211 (242)
T PRK11124 139 P-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-T-GITQVIVTHEVEVARKTASRV 211 (242)
T ss_pred h-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-c-CCEEEEEeCCHHHHHHhcCEE
Confidence 5 46999999999999999999999999999999999999999999998864 2 466777889999999999999
Q ss_pred EEEcCCeEEEEcChhhH
Q 000562 379 ILLSEGQIVYQGPRVSV 395 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~ 395 (1419)
++|++|+++++|+.+++
T Consensus 212 ~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 212 VYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEECCEEEEeCCHHHh
Confidence 99999999999987654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=319.77 Aligned_cols=208 Identities=23% Similarity=0.253 Sum_probs=168.3
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
..+|+|+|+++++||++||+|+||||||||+++|+|..+.. ..+|+|.++|.++.. ...++.++|++|++.+
T Consensus 20 ~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l 99 (261)
T PRK14258 20 QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNL 99 (261)
T ss_pred eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCcc
Confidence 46999999999999999999999999999999999976521 237999999987531 2345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .|++||+.+....... ....+..+.+.++++.+++.+..+...+ ..+..||||||||++||++|+.+|++++||
T Consensus 100 ~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~laral~~~p~vllLD 175 (261)
T PRK14258 100 FP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIH-KSALDLSGGQQQRLCIARALAVKPKVLLMD 175 (261)
T ss_pred Cc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 87 8999999876433211 1222334567889999988542221111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecC----CEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG----GELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~g----G~~~~~G~~ 1054 (1419)
|||+|||+.+...+.+.|+++++ .|+|||+++|++. ++.+.+|++++|++| |++++.|+.
T Consensus 176 EP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~~~~G~i~~~~~~ 240 (261)
T PRK14258 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNENRIGQLVEFGLT 240 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCCCcCceEEEeCCH
Confidence 99999999999999999999875 4899999999986 577889999999853 899999986
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=286.37 Aligned_cols=213 Identities=22% Similarity=0.315 Sum_probs=180.1
Q ss_pred cccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCC-------------c-
Q 000562 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR-------------Q- 897 (1419)
Q Consensus 832 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~-------------~- 897 (1419)
..+..+.++...+|++||+..+.|+++.|+|.|||||||+|+||.-..+ +..|.|.+||..+. .
T Consensus 9 v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 9 VEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred hhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 3445566788899999999999999999999999999999999987766 56899999997531 1
Q ss_pred --ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHH
Q 000562 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975 (1419)
Q Consensus 898 --~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrq 975 (1419)
...+...|+|+|+..+..++||.||+.-+..-- ...++.+..++.+..+..+|+.+.+|... ..|||||+|
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP-----~~LSGGQQQ 159 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYP-----AHLSGGQQQ 159 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCc-----cccCchHHH
Confidence 123345799999999999999999987542111 23455666778889999999999888653 479999999
Q ss_pred HHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 976 rl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|++|||||+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. .-+...+++.|.+ |.+...||+.
T Consensus 160 R~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh~-G~iEE~G~P~ 237 (256)
T COG4598 160 RVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLHQ-GKIEEEGPPE 237 (256)
T ss_pred HHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEeec-ceecccCChH
Confidence 9999999999999999999999999999999999999999999999999998764 5566789999986 7999999973
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=318.58 Aligned_cols=204 Identities=26% Similarity=0.318 Sum_probs=165.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCce---EEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGI---IEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~---~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|++|++||+++|+|+||||||||+++|+|..++.+ .+|+|.++|.+... ..+++.++|++|++.
T Consensus 16 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 16 DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 3569999999999999999999999999999999999864322 37999999987532 234567999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++.+|++||+.+...... ....++..+.+++.++.+++.. ..+.. ++.||||||||++||++|+.+|+
T Consensus 96 ~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~ 168 (252)
T PRK14272 96 PFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP-----ATGLSGGQQQRLCIARALAVEPE 168 (252)
T ss_pred cCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC-----cccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999987643221 1112233445666777776542 22322 45799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |++++.|+.
T Consensus 169 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14272 169 ILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFLV-GDLVEHGPT 231 (252)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999864 799999999986 46678999999985 799998875
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-33 Score=312.98 Aligned_cols=205 Identities=26% Similarity=0.341 Sum_probs=173.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHH
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
++|+|+|++++||++++|+||||||||||+++|+|.+++. +|+|+++|+++.+.. .++.++|++|++..++.+|++
T Consensus 14 ~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 14 VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 6999999999999999999999999999999999999875 899999999876533 246799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.++....+.. . ......++.+++.+||++..++.+ ..|
T Consensus 91 ~nl~~~~~~~~~~--~--------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (232)
T cd03300 91 ENIAFGLRLKKLP--K--------------------------------AEIKERVAEALDLVQLEGYANRKP-----SQL 131 (232)
T ss_pred HHHHHHHHhcCCC--H--------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hhC
Confidence 9998764432110 0 001223577889999987777655 469
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 387 (1419)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++... +.+|+.++|+..++.+.+|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~-~~tiii~sh~~~~~~~~~d~i~~l~~G~~~ 210 (232)
T cd03300 132 SGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKEL-GITFVFVTHDQEEALTMSDRIAVMNKGKIQ 210 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHhcCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999987532 456666888889999999999999999999
Q ss_pred EEcChhhHH
Q 000562 388 YQGPRVSVL 396 (1419)
Q Consensus 388 ~~G~~~~~~ 396 (1419)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (232)
T cd03300 211 QIGTPEEIY 219 (232)
T ss_pred ecCCHHHHH
Confidence 999877653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=319.98 Aligned_cols=202 Identities=26% Similarity=0.305 Sum_probs=165.2
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCcc-----CCcc---c----ccceEEEEcc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQE---T----FARISGYCEQ 909 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~-----~~~~---~----~~~~~gyv~Q 909 (1419)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ +... . .++.++|++|
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA--PDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 469999999999999999999999999999999999866 468999999986 4321 1 2346999999
Q ss_pred CCC--CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000562 910 NDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1419)
Q Consensus 910 ~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~ 986 (1419)
++. +.+.+|+.|++.+...... . ....+..+.+.++++.+++.+ ..+.. +..||||||||++|||+|+.+
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~Gq~qrl~laral~~~ 169 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVG-A-RHYGDIRATAGDWLERVEIDAARIDDL-----PTTFSGGMQQRLQIARNLVTH 169 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhc-c-CcHHHHHHHHHHHHHHcCCChhHHhCC-----CccCCHHHHHHHHHHHHHhcC
Confidence 974 5677899999876432111 1 112233456788999999863 44443 357999999999999999999
Q ss_pred CCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+||+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+...+|++++|++ |++++.|+.
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLVMKQ-GRVVESGLT 236 (258)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999998765 899999999976 46568999999985 799999875
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-33 Score=319.69 Aligned_cols=207 Identities=23% Similarity=0.313 Sum_probs=168.2
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECCccCCc----ccccceEEEEccCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~ 913 (1419)
++.+|+|+|++|++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 33 ~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 45799999999999999999999999999999999997642 1358999999987532 2345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .|++||+.+...... ....++..+.+.++++.+++.+..+.... ..+..||||||||++|||+|+.+|++++||
T Consensus 113 ~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLD 188 (276)
T PRK14271 113 FP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188 (276)
T ss_pred CC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 87 899999987643221 12233334456788899988653221111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i~~~g~~ 246 (276)
T PRK14271 189 EPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRLVEEGPT 246 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999876 589999999976 56788999999985 799999885
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=318.29 Aligned_cols=212 Identities=22% Similarity=0.311 Sum_probs=168.9
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCC--C---CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKE--F---VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+++. .+.+|+|+++|+++.. . ..++.++|++|++.++
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 5999999999999999999999999999999999998762 1358999999998752 1 1245799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||.||+.++....+.....+ +....++++++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14267 98 PHLTIYDNVAIGVKLNGLVKSKK--------------------------------ELDERVEWALKKAALWDEVKDRL-N 144 (253)
T ss_pred CCCcHHHHHHHHHHhcCccCCHH--------------------------------HHHHHHHHHHHHcCCccchhhhh-c
Confidence 99999999987643221000000 01123566778888743111111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++++ + .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 145 DYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--E-YTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--C-CEEEEEECCHHHHHhhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999999854 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 222 YLGKLIEVGPTRKVF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=367.06 Aligned_cols=207 Identities=28% Similarity=0.366 Sum_probs=165.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||+++++... ++.++||+|++.+|. .|
T Consensus 488 ~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gT 563 (708)
T TIGR01193 488 NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-GS 563 (708)
T ss_pred cceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-HH
Confidence 5999999999999999999999999999999999999886 9999999999877654 578999999998665 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+|||.++.+. ....+.+.++++ .+. .++.+ -.|+...||.||+. ..
T Consensus 564 I~eNi~l~~~~---~~~~~~i~~a~~------------------~a~---------l~~~i--~~lp~gldt~i~e~-G~ 610 (708)
T TIGR01193 564 ILENLLLGAKE---NVSQDEIWAACE------------------IAE---------IKDDI--ENMPLGYQTELSEE-GS 610 (708)
T ss_pred HHHHHhccCCC---CCCHHHHHHHHH------------------HhC---------CHHHH--HhcccccCcEecCC-CC
Confidence 99999875311 000111111111 100 11111 24677889999974 46
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+||||||||++||||++++|++|+||||||+||+.+...+.+.|++. .++| +|.++|..+ ..+.+|+|++|++|+
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T-~IiitHr~~-~~~~~D~i~~l~~G~ 685 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKT-IIFVAHRLS-VAKQSDKIIVLDHGK 685 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCE-EEEEecchH-HHHcCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999864 2444 455666655 557899999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
+++.|+++++.+
T Consensus 686 i~~~G~~~~L~~ 697 (708)
T TIGR01193 686 IIEQGSHDELLD 697 (708)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=311.96 Aligned_cols=188 Identities=24% Similarity=0.310 Sum_probs=162.8
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
+.+++++|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.++.....++.++|++|++.+++.+|++|
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e 101 (214)
T PRK13543 24 EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH--VESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLE 101 (214)
T ss_pred ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCCeeEEECCEEccchhhhhceEEeecCcccccCCcHHH
Confidence 469999999999999999999999999999999999876 458999999987654334557899999998888899999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~ 1001 (1419)
++.+....+. .. ..+.++++++.+++.+..+..+ ..||+|||||++||++++.+|++++|||||+|||+
T Consensus 102 ~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 102 NLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred HHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9988654321 11 2234678899999987766654 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe
Q 000562 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1419)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1043 (1419)
.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++.
T Consensus 171 ~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 171 EGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 9999999999999888999999999986 5778999999986
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=317.01 Aligned_cols=210 Identities=24% Similarity=0.311 Sum_probs=166.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+.+++||+++|+|||||||||||++|+|..+ +..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999864 1113589999999887532 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.++....+.... + .....++.+++.+||.+...+.. +
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 144 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-A--------------------------------YLAERVERSLRHAALWDEVKDRL-H 144 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 7 5999999886432211000 0 01123556777888854221222 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + .+|+.++|+..++.+++|+|++|
T Consensus 145 ~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tvii~tH~~~~~~~~~d~v~~l 221 (253)
T PRK14242 145 ESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--R-YTIIIVTHNMQQAARVSDVTAFF 221 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--C-CeEEEEEecHHHHHHhCCEEEEE
Confidence 34567999999999999999999999999999999999999999999999843 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 222 YMGKLIEVGPTEQIF 236 (253)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887763
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=310.77 Aligned_cols=210 Identities=22% Similarity=0.338 Sum_probs=172.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC---CceEEEEEEECCccCC---cc----cccceEEEEccC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKR---QE----TFARISGYCEQN 910 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~~~~---~~----~~~~~~gyv~Q~ 910 (1419)
...+++||||++++||++||+|.|||||||+.++|.|..+ ....+|+|.++|.++. ++ -+.+.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999765 2356799999998642 22 133579999999
Q ss_pred C--CCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 911 D--IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 911 d--~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+ .+.|.+||.+-+.-......... ..++..+++.++++.+++.+-...+- ..+.+|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~--~YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLK--SYPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHh--hCCcccCCcHHHHHHHHHHHhCCCC
Confidence 6 46788999887765544322111 34455677888999999976432221 2356899999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~-~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+||.||||++||...+++|+++|+++.+ .|.|+|++|||+.. +.+.+|||+||.. |++|..||..
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~v-va~~aDri~VMYa-G~iVE~g~~~ 239 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMYA-GRIVEEGPVE 239 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HHHhcceEEEEEC-cEEEEeCCHH
Confidence 9999999999999999999999999986 69999999999874 8899999999995 8999999963
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=309.93 Aligned_cols=185 Identities=26% Similarity=0.323 Sum_probs=159.8
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
++.+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 12 GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP--PLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 4569999999999999999999999999999999999876 458999999987532 235567999999998888999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
++|++.+.... . ..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 90 v~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~ 155 (201)
T cd03231 90 VLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRRVALARLLLSGRPLWILDEPTTA 155 (201)
T ss_pred HHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 99999875311 1 2345788999999987766653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEE
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1042 (1419)
||+.+...+++.|+++.++|+|+|+++|++. +....+|+++++
T Consensus 156 LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 156 LDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 9999999999999998877999999999976 577788998876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=310.45 Aligned_cols=188 Identities=23% Similarity=0.322 Sum_probs=157.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCcc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
++.+|+|+|+++++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 13 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--p~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~t 90 (204)
T PRK13538 13 ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR--PDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELT 90 (204)
T ss_pred CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcccchHHhhhheEEeCCccccCcCCc
Confidence 4569999999999999999999999999999999999866 468999999987542 234567899999998889999
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
++|++.+....+.. ..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 91 v~e~l~~~~~~~~~------~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 159 (204)
T PRK13538 91 ALENLRFYQRLHGP------GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRRVALARLWLTRAPLWILDEPFTA 159 (204)
T ss_pred HHHHHHHHHHhcCc------cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 99999886543211 12345788999999987766543 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEE
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l 1042 (1419)
||+.+...+.+.|++++++|+|||+++|+++ .+-..-+|++++
T Consensus 160 LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 160 IDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 9999999999999999877899999999976 343433555554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=317.96 Aligned_cols=207 Identities=23% Similarity=0.283 Sum_probs=165.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|++|++|++++|+||||||||||+++|+|..++. +.+|+|.++|.+... ..+++.++|++|++.
T Consensus 16 ~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 95 (251)
T PRK14249 16 KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN 95 (251)
T ss_pred CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc
Confidence 346999999999999999999999999999999999976521 236999999987532 234677999999998
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++. |++||+.+....+... ..+..++.++++++.+++.+....... ..+..||||||||++|||+|+.+|++++|
T Consensus 96 ~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllL 171 (251)
T PRK14249 96 PFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGLALSGGQQQRLCIARVLAIEPEVILM 171 (251)
T ss_pred cCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 9999999875433111 112233456777888887532111111 22457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 172 DEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14249 172 DEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLT-GDLVEYGRT 230 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999999999985 5899999999986 46678899999985 799998875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=313.18 Aligned_cols=204 Identities=27% Similarity=0.407 Sum_probs=172.0
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHH
Q 000562 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1419)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1419)
+|+|+|++|+|||+++|+||||||||||+++|+|.+++. +|+|.++|.++.... .++.++|++|++.+++.+|++|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999998775 899999999876533 2467999999998898999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000562 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1419)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1419)
|+.++....+.. . . +....+.++++.+||.+..++.+. .||
T Consensus 91 ~l~~~~~~~~~~--~------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 131 (235)
T cd03299 91 NIAYGLKKRKVD--K------------------K--------------EIERKVLEIAEMLGIDHLLNRKPE-----TLS 131 (235)
T ss_pred HHHHHHHHcCCC--H------------------H--------------HHHHHHHHHHHHcCChhHHhcCcc-----cCC
Confidence 998754321100 0 0 011235678889999877776654 599
Q ss_pred hHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000562 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1419)
Q Consensus 309 GGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 388 (1419)
|||||||+||||++.+|++++|||||+|||+.++.++.+.|++++... +++++.++|+.+++.+.+|++++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~-~~tili~tH~~~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEF-GVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999986533 4566678889999999999999999999999
Q ss_pred EcChhhHH
Q 000562 389 QGPRVSVL 396 (1419)
Q Consensus 389 ~G~~~~~~ 396 (1419)
.|+.+++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99887664
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=320.84 Aligned_cols=208 Identities=27% Similarity=0.366 Sum_probs=171.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 101 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMT 101 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCcc
Confidence 6999999999999999999999999999999999998765 9999999987754322 357999999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|.||+.++..... . ... . .. ......++.+++.+||++..++.++
T Consensus 102 v~e~l~~~~~~~~-~-~~~-------------~-~~--------------~~~~~~~~~~l~~~~l~~~~~~~~~----- 146 (265)
T PRK10575 102 VRELVAIGRYPWH-G-ALG-------------R-FG--------------AADREKVEEAISLVGLKPLAHRLVD----- 146 (265)
T ss_pred HHHHHHhCccccc-c-ccc-------------C-CC--------------HHHHHHHHHHHHHcCCHHHhcCCcc-----
Confidence 9999987532100 0 000 0 00 0012246778899999876676654
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++++.. +++|+.++|+.+++.+.+|+|++|++|+
T Consensus 147 ~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~-~~tiii~sH~~~~i~~~~d~i~~l~~G~ 225 (265)
T PRK10575 147 SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQER-GLTVIAVLHDINMAARYCDYLVALRGGE 225 (265)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECCe
Confidence 599999999999999999999999999999999999999999999986532 4567778899999999999999999999
Q ss_pred EEEEcChhhH
Q 000562 386 IVYQGPRVSV 395 (1419)
Q Consensus 386 iv~~G~~~~~ 395 (1419)
+++.|+.+++
T Consensus 226 i~~~~~~~~~ 235 (265)
T PRK10575 226 MIAQGTPAEL 235 (265)
T ss_pred EEEecCHHHh
Confidence 9999988765
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=322.97 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=165.1
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC--C-ceEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
+..+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.++.. ..+++.++|++|++.
T Consensus 51 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (286)
T PRK14275 51 EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN 130 (286)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC
Confidence 3469999999999999999999999999999999999642 1 1258999999987532 134567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++. ||+||+.+....+.. ......++.+.++++.+++.+ ..+. .+..||||||||++|||+|+.+|+
T Consensus 131 l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~ 202 (286)
T PRK14275 131 PFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDK-----NALGLSGGQQQRLCVARTLAVEPE 202 (286)
T ss_pred CCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhC-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 8775 999999986543311 112233456778888888742 2232 245799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|+|||||+|||+.+...+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 203 lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~~-G~i~~~g~~ 265 (286)
T PRK14275 203 ILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFYE-GVLVEHAPT 265 (286)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999865 689999999986 46678999999985 799999885
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=318.08 Aligned_cols=201 Identities=22% Similarity=0.257 Sum_probs=165.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--ceEEEEEEECCccCCcccc-cceEEEEccCCC--CCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF-ARISGYCEQNDI--HSPG 916 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~d~--~~~~ 916 (1419)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..++ .+.+|+|.++|.++..... ++.++|++|++. +.+.
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 3589999999999999999999999999999999998652 1168999999987643322 357999999974 4466
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc---cCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL---SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~---~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
.|+.+++.+.+..... .. ..+.++++++.+++.+. .+.. +..||||||||++|||+|+.+|++|+||
T Consensus 96 ~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lLlLD 165 (254)
T PRK10418 96 HTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLY-----PFEMSGGMLQRMMIALALLCEAPFIIAD 165 (254)
T ss_pred ccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcC-----CcccCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 8999998765432211 11 22567889999999762 3333 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 166 EPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 225 (254)
T PRK10418 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSH-GRIVEQGDV 225 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999764 899999999976 46678999999985 799998885
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=318.75 Aligned_cols=208 Identities=25% Similarity=0.365 Sum_probs=171.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++.... .++.++|++|++..++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 36999999999999999999999999999999999998775 999999998765432 235699999998888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||.||+.++..-. ...+. ..+ ......++.+++.+||++..++.++
T Consensus 92 tv~~~i~~~~~~~--~~~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~~---- 137 (255)
T PRK11231 92 TVRELVAYGRSPW--LSLWG-------------RLS---------------AEDNARVNQAMEQTRINHLADRRLT---- 137 (255)
T ss_pred cHHHHHHhccchh--hhhcc-------------CCC---------------HHHHHHHHHHHHHcCCHHHHcCCcc----
Confidence 9999998753100 00000 000 0012245778889999877776654
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|++++.. +++++.++|+..++.+++|++++|++|
T Consensus 138 -~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~--~~tiii~tH~~~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 138 -DLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQ--GKTVVTVLHDLNQASRYCDHLVVLANG 214 (255)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHhcCEEEEEECC
Confidence 59999999999999999999999999999999999999999999988652 456777889999999999999999999
Q ss_pred eEEEEcChhhH
Q 000562 385 QIVYQGPRVSV 395 (1419)
Q Consensus 385 ~iv~~G~~~~~ 395 (1419)
+++..|+.+++
T Consensus 215 ~i~~~~~~~~~ 225 (255)
T PRK11231 215 HVMAQGTPEEV 225 (255)
T ss_pred eEEEEcCHHHh
Confidence 99999988765
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=312.87 Aligned_cols=201 Identities=22% Similarity=0.391 Sum_probs=169.2
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHHHHH
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1419)
|+|+++++|++++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++.+++.+|+.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999998775 8999999998764332 357999999998899999999998
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHH
Q 000562 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1419)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1419)
++... ... .. . .....++.+++.+||++..|+.+. .|||||
T Consensus 94 ~~~~~-~~~--~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--LN---A----------------------------AQREKLHAIARQMGIEDLLARLPG-----QLSGGQ 134 (232)
T ss_pred ccccc-ccC--CC---H----------------------------HHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHH
Confidence 75321 000 00 0 012236778999999877776664 599999
Q ss_pred hHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEEEcC
Q 000562 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1419)
Q Consensus 312 kkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~~G~ 391 (1419)
||||+||+|++.+|++++|||||+|||..++..+.+.|+++++.. +++++.++|+..++.+++|++++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQER-QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999886533 4566678899999999999999999999999999
Q ss_pred hhhHH
Q 000562 392 RVSVL 396 (1419)
Q Consensus 392 ~~~~~ 396 (1419)
.+++.
T Consensus 214 ~~~~~ 218 (232)
T PRK10771 214 TDELL 218 (232)
T ss_pred HHHHH
Confidence 87764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=318.66 Aligned_cols=206 Identities=25% Similarity=0.296 Sum_probs=166.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+|+|++|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 38 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 117 (272)
T PRK14236 38 KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNP 117 (272)
T ss_pred eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCcc
Confidence 4699999999999999999999999999999999998542 1358999999987642 2345689999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++. |++||+.+....+. ....+..++.++++++.+++.+....... ..+..||||||||++|||+|+.+|++++||
T Consensus 118 ~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 118 FPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLH-ENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred Ccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhh-CCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 876 99999987654321 11122234567888888888532111111 124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++++ +.|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 251 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYM-GKLVEYGDT 251 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999975 799999999976 46778999999985 799998875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=319.84 Aligned_cols=210 Identities=24% Similarity=0.357 Sum_probs=172.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
.++|+|+|+++++|++++|+|||||||||||++|+|.++++ +|+|.++|+++..... ++.++|++|++..++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 36999999999999999999999999999999999998775 8999999998754332 35699999999888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++..-.. . .... . . ......++.+++.+||++..++.+
T Consensus 97 tv~~~~~~~~~~~~-~-~~~~--------------~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~----- 141 (265)
T PRK10253 97 TVQELVARGRYPHQ-P-LFTR--------------W-R-------------KEDEEAVTKAMQATGITHLADQSV----- 141 (265)
T ss_pred cHHHHHHhCccccc-c-cccC--------------C-C-------------HHHHHHHHHHHHHcCCHHHhcCCc-----
Confidence 99999987521000 0 0000 0 0 001224677889999987666554
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
+.||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|++++|++|
T Consensus 142 ~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~-~~tiii~tH~~~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREK-GYTLAAVLHDLNQACRYASHLIALREG 220 (265)
T ss_pred ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 4699999999999999999999999999999999999999999999987532 456777889999999999999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+.+++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999987764
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=304.49 Aligned_cols=195 Identities=27% Similarity=0.415 Sum_probs=170.8
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-------CCceEEEEccCCCCCCCCC
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 225 (1419)
++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .+|.+|||+||..+||++|
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 577777775899999999999999999999999987 999999998664321 2589999999999999999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
|+-||.|+.... .....|++.+.||++|..+.. ..
T Consensus 93 VrgNL~YG~~~~----------------------------------------~~~~fd~iv~lLGI~hLL~R~-----P~ 127 (352)
T COG4148 93 VRGNLRYGMWKS----------------------------------------MRAQFDQLVALLGIEHLLDRY-----PG 127 (352)
T ss_pred Eecchhhhhccc----------------------------------------chHhHHHHHHHhCcHHHHhhC-----CC
Confidence 999999975321 011257788999999988754 45
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.|||||||||+|||||++.|++|+||||.+.||-....+|+-+|.++.++. +.-|+.++|...|+..++|+|++|++|+
T Consensus 128 ~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~-~IPIlYVSHS~~Ev~RLAd~vV~le~Gk 206 (352)
T COG4148 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLDEVLRLADRVVVLENGK 206 (352)
T ss_pred ccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhc-CCCEEEEecCHHHHHhhhheEEEecCCe
Confidence 799999999999999999999999999999999999999999999998865 5667789999999999999999999999
Q ss_pred EEEEcChhhHH
Q 000562 386 IVYQGPRVSVL 396 (1419)
Q Consensus 386 iv~~G~~~~~~ 396 (1419)
+...|+.+++.
T Consensus 207 V~A~g~~e~v~ 217 (352)
T COG4148 207 VKASGPLEEVW 217 (352)
T ss_pred EEecCcHHHHh
Confidence 99999998875
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=321.18 Aligned_cols=202 Identities=22% Similarity=0.285 Sum_probs=164.3
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC--C-ceEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... . .+.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 469999999999999999999999999999999999632 1 1358999999987532 1345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCc
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~i 989 (1419)
++. |++||+.+...... .......++.++++++.+++.+ ..+. .+..||||||||++|||+|+.+|++
T Consensus 114 ~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LSgGq~qrl~laral~~~p~l 185 (268)
T PRK14248 114 FPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHS-----SALSLSGGQQQRLCIARTLAMKPAV 185 (268)
T ss_pred Ccc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhc-----CcccCCHHHHHHHHHHHHHhCCCCE
Confidence 875 99999987643221 1112223455677888888752 2222 2457999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 990 llLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ |++++.|+.
T Consensus 186 llLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 247 (268)
T PRK14248 186 LLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFLN-GDLVEYDQT 247 (268)
T ss_pred EEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999865 689999999976 47788999999985 799999874
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=345.86 Aligned_cols=123 Identities=24% Similarity=0.359 Sum_probs=99.4
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-cCCcccCCCCCCCCHHHHHHHHHHHHHhh---CCCcce
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVA---NPSIVF 991 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-~~~~~g~~~~~~lSgGqrqrl~iA~~L~~---~p~ill 991 (1419)
.+||.|.+.|...+. .. ....++++.+||... .+.. ...|||||+||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467777777754332 01 123577888888653 3333 35799999999999999997 599999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe-----cCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~-----~gG~~~~~G~~ 1054 (1419)
|||||+|||+.+...+++.|+++.++|.|||+++|++. ....+|++++|. +||++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446799999994 57999999985
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=315.53 Aligned_cols=211 Identities=20% Similarity=0.267 Sum_probs=168.9
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ |..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 18 HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 59999999999999999999999999999999999975 3223589999999887432 1246799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+.+||+||+.++.+..+.... . +....++.+++.+||........ +
T Consensus 98 ~~~tv~enl~~~~~~~~~~~~-------------------~--------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14256 98 PAMSIYDNVIAGYKLNGRVNR-------------------S--------------EADEIVESSLKRVALWDEVKDRL-K 143 (252)
T ss_pred CcCcHHHHHHhHHHhcCCCCH-------------------H--------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 999999999875432110000 0 01123567788888854211111 1
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..++.||||||||++|||+|+.+|++++|||||+|||..++.++.+.|+++++ + ++|+.++|+..++.+++|++++|
T Consensus 144 ~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~-~tiiivsH~~~~~~~~~d~i~~l 220 (252)
T PRK14256 144 SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--K-YTIIIVTHNMQQAARVSDYTAFF 220 (252)
T ss_pred CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--C-CcEEEEECCHHHHHhhCCEEEEE
Confidence 23457999999999999999999999999999999999999999999999864 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 221 YMGDLVECGETKKIF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=350.49 Aligned_cols=200 Identities=23% Similarity=0.329 Sum_probs=171.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c-ccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||++||+|||||||||||++|+|... +.+|+|.++|.++... . .++.+||++|++.+++.
T Consensus 23 ~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 23 GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP--PDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 3569999999999999999999999999999999999866 4589999999875421 1 23468999999999999
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
+||+|++.+.... ..+.++.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|+|||||
T Consensus 101 ~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~aL~~~p~lllLDEPt 168 (510)
T PRK15439 101 LSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEVADRQIVEILRGLMRDSRILILDEPT 168 (510)
T ss_pred CcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence 9999999875311 1223456789999999987776654 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
+|||+.++..+.+.|++++++|+|||+++|++. .+.+.+|++++|.+ |++++.|+..+
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~~ 226 (510)
T PRK15439 169 ASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALSGKTAD 226 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecChHH
Confidence 999999999999999999888999999999976 46678999999985 79999998643
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=314.55 Aligned_cols=212 Identities=19% Similarity=0.272 Sum_probs=169.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|.+++..+.+|+|+++|+++.+.. .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 36999999999999999999999999999999999987542345999999999876532 2457999999988776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++....+.... . ......++.+++.+||........ ++..
T Consensus 94 tv~eni~~~~~~~~~~~~-------------------~-------------~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIKN-------------------K-------------DEEEALVVDCLQKVGLFEEVKDKL-KQNA 140 (246)
T ss_pred cHHHHhhhHHhhcCcccC-------------------h-------------HHHHHHHHHHHHHcCCChhhhHHh-cCCc
Confidence 999999886433211000 0 001223567888889853211111 2345
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++++.++|+.+++.+.+|++++|++|
T Consensus 141 ~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~tH~~~~~~~~~d~i~~l~~G 217 (246)
T PRK14269 141 LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH---NLSMIMVTHNMQQGKRVADYTAFFHLG 217 (246)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC---CCEEEEEecCHHHHHhhCcEEEEEECC
Confidence 67999999999999999999999999999999999999999999998753 456777889999999999999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+.+++.
T Consensus 218 ~i~~~g~~~~~~ 229 (246)
T PRK14269 218 ELIEFGESKEFF 229 (246)
T ss_pred EEEEECCHHHHH
Confidence 999999987763
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=349.46 Aligned_cols=210 Identities=22% Similarity=0.370 Sum_probs=173.5
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc----cccceEEEEccCCCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSP 915 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~d~~~~ 915 (1419)
+++.+|+|||+++++||++||+||||||||||+++|+|..++++.+|+|.++|.++... ..++.+||++|++.+++
T Consensus 12 ~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (500)
T TIGR02633 12 GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVP 91 (500)
T ss_pred CCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCC
Confidence 34579999999999999999999999999999999999865322589999999876431 12356999999998889
Q ss_pred CccHHHHHHHHhhhcCCC-CCcHHHHHHHHHHHHHHcCCcccc-CCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 916 GLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~-~~~~~~~~~~v~~vl~~l~l~~~~-~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
.+||+|++.+....+... ....++..++++++++.+++.+.. +.. +..|||||||||+||++|+.+|++|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllLD 166 (500)
T TIGR02633 92 ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLILD 166 (500)
T ss_pred CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 999999998864332111 112233445688999999997654 333 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
|||+|||+.+...+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |++++.|+...
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 167 EPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 999999999999999999999888999999999976 46678999999986 78999988654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=313.41 Aligned_cols=206 Identities=20% Similarity=0.246 Sum_probs=167.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC-CeeeEEEECCccCCCCCC-CceEEEEccCCC--CCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEFVP-PRTSAYVSQQDW--QVAEM 224 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 224 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+++.. +.+|+|.++|+++..... ++.++||+|++. +.+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999987621 148999999998754322 357999999974 34567
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc---cccccccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT---CADTLVGD 301 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~---~~dt~vg~ 301 (1419)
|+.+++.+.+...+.. .....++.+++.+||.+ ..++.
T Consensus 97 ~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (254)
T PRK10418 97 TMHTHARETCLALGKP------------------------------------ADDATLTAALEAVGLENAARVLKLY--- 137 (254)
T ss_pred cHHHHHHHHHHHcCCC------------------------------------hHHHHHHHHHHHcCCCChhhhhhcC---
Confidence 9999886543221100 00123567888999975 23443
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.+.|||||||||+|||||+.+|++|+|||||+|||..++..+.+.|+++++. .+++|+.++|+..++.+.+|++++|
T Consensus 138 --~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~-~g~til~~sH~~~~~~~~~d~v~~l 214 (254)
T PRK10418 138 --PFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQK-RALGMLLVTHDMGVVARLADDVAVM 214 (254)
T ss_pred --CcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHh-cCcEEEEEecCHHHHHHhCCEEEEE
Confidence 4569999999999999999999999999999999999999999999998753 3566777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999988763
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=307.91 Aligned_cols=199 Identities=21% Similarity=0.316 Sum_probs=166.3
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHH
Q 000562 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1419)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1419)
+++|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999998876 999999999875432 3467999999999898999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCC
Q 000562 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1419)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1419)
|+.+...... .. + ......++++++.+||++..++.+ +.||
T Consensus 90 n~~~~~~~~~-~~--~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-KL--N-------------------------------AEQQEKVVDAAQQVGIADYLDRLP-----EQLS 130 (213)
T ss_pred HHHhHhhccC-Cc--c-------------------------------HHHHHHHHHHHHHcCcHHHhhCCc-----ccCC
Confidence 9986432100 00 0 001123567889999987766655 4699
Q ss_pred hHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEEE
Q 000562 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1419)
Q Consensus 309 GGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv~ 388 (1419)
||||||++||++++.+|++++|||||+|||..++..+.+.|+++.+. .+++|+.++|+..++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE-RQRTLLMVTHHLSDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998653 35667778899999999999999999999998
Q ss_pred EcC
Q 000562 389 QGP 391 (1419)
Q Consensus 389 ~G~ 391 (1419)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=318.91 Aligned_cols=207 Identities=22% Similarity=0.261 Sum_probs=169.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCC--CCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW--QVA 222 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 222 (1419)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999875 9999999988753221 246999999974 567
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-ccccccccC
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGD 301 (1419)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~ 301 (1419)
.+||.|++.+..+...... . .+....++.+++.+||. ...++.+
T Consensus 103 ~~tv~~~l~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~~-- 147 (267)
T PRK15112 103 RQRISQILDFPLRLNTDLE---------P------------------------EQREKQIIETLRQVGLLPDHASYYP-- 147 (267)
T ss_pred chhHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCCChHHHhcCc--
Confidence 8899999987543221000 0 00122467789999994 5555544
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++.. +++|+.++|+..++.+++|++++|
T Consensus 148 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-g~tviivsH~~~~~~~~~d~i~~l 223 (267)
T PRK15112 148 ---HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQ-GISYIYVTQHLGMMKHISDQVLVM 223 (267)
T ss_pred ---hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHhcCEEEEE
Confidence 4699999999999999999999999999999999999999999999987532 466777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999887764
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=349.12 Aligned_cols=208 Identities=25% Similarity=0.332 Sum_probs=174.4
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCCCCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~ 915 (1419)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 9 ~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ--KDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred CCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 34579999999999999999999999999999999999865 458999999987542 123467999999988889
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+||+|++.+............++..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|+||||
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEP 161 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEP 161 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 9999999987532111111122334456889999999987766654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
|+|||+.+...+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..|+...
T Consensus 162 t~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 162 TSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 9999999999999999999888999999999976 56678999999985 79999998654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=317.23 Aligned_cols=207 Identities=26% Similarity=0.287 Sum_probs=166.1
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..... +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 18 EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 356999999999999999999999999999999999974311 247999999987542 234567999999998
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++. ||+||+.|....+.. ....+.++.+.++++.+++.+....... .....||+|||||++|||+|+.+|++++|
T Consensus 98 ~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~G~~qrv~laral~~~p~lllL 173 (253)
T PRK14261 98 PFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLH-DSALSLSGGQQQRLCIARTLAVNPEVILM 173 (253)
T ss_pred cCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8875 999999987544321 1222334567788888887531111111 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|++ |+++..|+.
T Consensus 174 DEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 232 (253)
T PRK14261 174 DEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYL-GKLIEFDKT 232 (253)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEEC-CEEEEcCCH
Confidence 999999999999999999999875 689999999976 46678999999985 799998885
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=315.92 Aligned_cols=197 Identities=25% Similarity=0.387 Sum_probs=167.5
Q ss_pred eeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCccHH
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 844 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
+|+|+|+++++||+++|+|+||||||||+++|+|..+ .+|+|.++|.++.. ..+++.++|++|++.+++.+|++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7899999999999999999999999999999999864 27999999987542 23345689999998888889999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhh-------CCCcceee
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 993 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~-------~p~illLD 993 (1419)
||+.+..... ....+..+.++++++.+++.+..+..+ +.||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 9998753211 122233456789999999987666543 4799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999976 47788999999985 799999875
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=317.31 Aligned_cols=208 Identities=28% Similarity=0.405 Sum_probs=171.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
..+|+|+|+.+++||+++|+|||||||||||++|+|.+++. +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 36999999999999999999999999999999999998775 8999999998765432 34689999998778889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
||+||+.++.... ...+ .. + ..+....++.+++.+||.+..++.++
T Consensus 91 tv~e~l~~~~~~~--~~~~-------------~~-~--------------~~~~~~~~~~~l~~~~l~~~~~~~~~---- 136 (256)
T TIGR03873 91 TVRDVVALGRIPH--RSLW-------------AG-D--------------SPHDAAVVDRALARTELSHLADRDMS---- 136 (256)
T ss_pred CHHHHHHhcchhh--hhhc-------------cC-C--------------CHHHHHHHHHHHHHcCcHhhhcCCcc----
Confidence 9999998742100 0000 00 0 00012246778889999876666554
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
.|||||||||+||+|++.+|++++|||||+|||+.+...+.+.|+++... +++|+.++|+..++.+++|+|++|++|
T Consensus 137 -~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~~tiii~sH~~~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 137 -TLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAAT--GVTVVAALHDLNLAASYCDHVVVLDGG 213 (256)
T ss_pred -cCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhc--CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 59999999999999999999999999999999999999999999998642 466777889999999999999999999
Q ss_pred eEEEEcChhhH
Q 000562 385 QIVYQGPRVSV 395 (1419)
Q Consensus 385 ~iv~~G~~~~~ 395 (1419)
+++..|+.+++
T Consensus 214 ~i~~~g~~~~~ 224 (256)
T TIGR03873 214 RVVAAGPPREV 224 (256)
T ss_pred CEEEecCHHHh
Confidence 99999988765
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=305.13 Aligned_cols=179 Identities=25% Similarity=0.316 Sum_probs=150.5
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCC-CC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI-HS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~-~~ 914 (1419)
++.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++. ..
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR--PQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3569999999999999999999999999999999999876 468999999987531 134567999999973 33
Q ss_pred CCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeC
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDE 994 (1419)
...||+||+.+....+ ....++..+.++++++.+++.+..+..+ ..||||||||++|||+|+.+|++++|||
T Consensus 82 ~~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDE 153 (190)
T TIGR01166 82 FAADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDE 153 (190)
T ss_pred ccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3579999999865432 1223334456789999999987776654 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCC
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1419)
Q Consensus 995 PTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~ 1029 (1419)
||+|||+.++..+.+.|++++++|+|||+++|++.
T Consensus 154 Pt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 154 PTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 99999999999999999999877999999999975
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=312.10 Aligned_cols=205 Identities=27% Similarity=0.388 Sum_probs=171.9
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHH
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~ 227 (1419)
++|+|+|+++++||+++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|++
T Consensus 14 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 6999999999999999999999999999999999998765 9999999998764333 46799999999888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCC
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1419)
||+.+.....+... . .....++++++.++|....|+.+ +.|
T Consensus 91 enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~~l 131 (237)
T TIGR00968 91 DNIAFGLEIRKHPK----------A------------------------KIKARVEELLELVQLEGLGDRYP-----NQL 131 (237)
T ss_pred HHHHhHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCCHhHhhCCh-----hhC
Confidence 99987643221100 0 00123567888999977666655 469
Q ss_pred ChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCeEE
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~iv 387 (1419)
|||||||++||++++.+|++++|||||+|||..++..+.+.|++.+.. .+.+++.++|...++.+++|++++|++|+++
T Consensus 132 S~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~-~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~ 210 (237)
T TIGR00968 132 SGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE-VHVTTVFVTHDQEEAMEVADRIVVMSNGKIE 210 (237)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCCEEEEEeCCHHHHHhhcCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999988653 2456666888889999999999999999999
Q ss_pred EEcChhhHH
Q 000562 388 YQGPRVSVL 396 (1419)
Q Consensus 388 ~~G~~~~~~ 396 (1419)
+.|+.+++.
T Consensus 211 ~~~~~~~~~ 219 (237)
T TIGR00968 211 QIGSPDEVY 219 (237)
T ss_pred EecCHHHHH
Confidence 999987764
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=311.31 Aligned_cols=195 Identities=24% Similarity=0.360 Sum_probs=162.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC--C---CCceEEEEccCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF--V---PPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~--~---~~~~~~yv~Q~d~~~~ 222 (1419)
.++|+|+|+.+++|++++|+|||||||||||++|+|.+++. +|+|.++|+++... . .++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 35999999999999999999999999999999999998775 99999999887421 1 2467999999998888
Q ss_pred CCCHHHHHHHhhh-hcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 223 EMTVRETLDFAGQ-CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 223 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
.+|++||+.++.. .++. . . .+....++.+++.+||++..++.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~----~------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 133 (213)
T cd03262 90 HLTVLENITLAPIKVKGM----S------K------------------------AEAEERALELLEKVGLADKADAYP-- 133 (213)
T ss_pred CCcHHHHHHhHHHHhcCC----C------H------------------------HHHHHHHHHHHHHcCCHhHhhhCc--
Confidence 9999999987532 1100 0 0 001223567888999987666655
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|++++|
T Consensus 134 ---~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~--~~tvi~~sh~~~~~~~~~d~i~~l 208 (213)
T cd03262 134 ---AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE--GMTMVVVTHEMGFAREVADRVIFM 208 (213)
T ss_pred ---cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998752 456777889999999999999999
Q ss_pred cCCeE
Q 000562 382 SEGQI 386 (1419)
Q Consensus 382 ~~G~i 386 (1419)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-33 Score=319.17 Aligned_cols=204 Identities=25% Similarity=0.343 Sum_probs=169.4
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc------ccccceEEEEccCC--CC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQND--IH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~d--~~ 913 (1419)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++ .+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV 102 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc
Confidence 579999999999999999999999999999999999865 468999999987542 12456799999997 35
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
.+..|+.|++.+..... ......+..+.++++++.+++. +..+.. +..||+|||||++||++|+.+|++|+|
T Consensus 103 ~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~~LS~Ge~qrl~laral~~~p~lllL 175 (268)
T PRK10419 103 NPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PPQLSGGQLQRVCLARALAVEPKLLIL 175 (268)
T ss_pred CCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----CccCChHHHHHHHHHHHHhcCCCEEEE
Confidence 67889999987643211 1122334455688999999996 455543 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~~ 1056 (1419)
||||+|||+.+...+.+.|++++++ |.|||+++|++. ++.+.+|++++|.+ |++++.|+..+
T Consensus 176 DEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~~ 238 (268)
T PRK10419 176 DEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDN-GQIVETQPVGD 238 (268)
T ss_pred eCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEEC-CEEeeeCChhh
Confidence 9999999999999999999999765 899999999976 46678999999985 79999998643
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-33 Score=316.30 Aligned_cols=203 Identities=25% Similarity=0.340 Sum_probs=165.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--c-eEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
.+.+|+|+|++|++||+++|+|+||||||||+++|+|..+. . +.+|+|.++|.+... ...++.++|++|++.
T Consensus 16 ~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 16 NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 35699999999999999999999999999999999997641 1 358999999987532 234567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++ .||+||+.+....+.. ...+..++.++++++.+++.. ..+. .+..||||||||++|||+|+.+|+
T Consensus 96 ~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~~LS~Gq~qr~~laral~~~p~ 167 (251)
T PRK14251 96 PFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDR-----NAQAFSGGQQQRICIARALAVRPK 167 (251)
T ss_pred cCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhcc-----ChhhCCHHHHHHHHHHHHHhcCCC
Confidence 775 7999999876433211 112223355778889888842 2222 245799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+++|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|++ |+++..|+.
T Consensus 168 llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 230 (251)
T PRK14251 168 VVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLMN-GDLIEAGPT 230 (251)
T ss_pred EEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999999999854 799999999986 46778999999985 799988874
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-33 Score=314.39 Aligned_cols=210 Identities=22% Similarity=0.321 Sum_probs=166.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+++++||+++|+|||||||||||++|+|..+ |..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 19 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 98 (252)
T PRK14239 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPF 98 (252)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCccC
Confidence 59999999999999999999999999999999999853 4223489999999887431 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ +||+||+.++....+... + + .....++.+++.+|+.....+.. +
T Consensus 99 ~-~tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 143 (252)
T PRK14239 99 P-MSIYENVVYGLRLKGIKD--K---Q----------------------------VLDEAVEKSLKGASIWDEVKDRL-H 143 (252)
T ss_pred c-CcHHHHHHHHHHHcCCCc--H---H----------------------------HHHHHHHHHHHHcCCchhHHHHH-h
Confidence 6 899999987643221100 0 0 00123456677777743211111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.|||||||||+||+||+.+|++++|||||+|||..++..+.+.|+++.+ + ++|+.++|+.+++.+.+|+|++|
T Consensus 144 ~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~~~~~d~i~~l 220 (252)
T PRK14239 144 DSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--D-YTMLLVTRSMQQASRISDRTGFF 220 (252)
T ss_pred cCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--C-CeEEEEECCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998853 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 221 ~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 221 LDGDLIEYNDTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=360.11 Aligned_cols=209 Identities=26% Similarity=0.403 Sum_probs=173.2
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.++|+++... +++.+|+|+|++++|||++||+|+||||||||+++|+|.. + .+|+|.+||.+.
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEec
Confidence 578888875431 2346999999999999999999999999999999999986 3 489999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------ccCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~~~ 965 (1419)
.+ ..+++.++||+|++.++.. |++||+.++. | +.+. +.++++++..++.+ -.|+.+|..+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~G 483 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQA 483 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCH----HHHHHHHHHhCHHHHHHhcccccccccccCC
Confidence 53 5677899999999988864 9999998752 1 2232 33566666666543 3467777654
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
..||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 484 -~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~- 558 (588)
T PRK11174 484 -AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQD- 558 (588)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeC-
Confidence 4699999999999999999999999999999999999999999999875 5899999999975 5678999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 559 G~i~e~G~~ 567 (588)
T PRK11174 559 GQIVQQGDY 567 (588)
T ss_pred CeEeecCCH
Confidence 799999874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=300.09 Aligned_cols=157 Identities=29% Similarity=0.447 Sum_probs=142.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCccH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
..+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK--PDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 469999999999999999999999999999999999865 458999999987543 2345679999999988888999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++. ||||||||++||++|+.+|++++|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
|+.++..+.+.|++++++|.|+|+++|+++ ++.+.+|++++|++|
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g 171 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNG 171 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCC
Confidence 999999999999999877999999999976 466789999999864
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=315.10 Aligned_cols=211 Identities=20% Similarity=0.266 Sum_probs=167.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCCC-----CCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|..+ +..+.+|+|.++|+++.... .++.++|++|++.+
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 95 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNP 95 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCcc
Confidence 359999999999999999999999999999999999732 21124899999999875421 23579999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++ .||+||+.++....+... . + .....++++++.+||.+...+..
T Consensus 96 ~~-~tv~~nl~~~~~~~~~~~--~--------~-----------------------~~~~~~~~~l~~~~l~~~~~~~~- 140 (250)
T PRK14245 96 FP-KSIFENVAYGLRVNGVKD--N--------A-----------------------FIRQRVEETLKGAALWDEVKDKL- 140 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc--H--------H-----------------------HHHHHHHHHHHHcCCCcchhhhh-
Confidence 76 699999987643221100 0 0 01123567888899864322222
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+...+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|++++
T Consensus 141 ~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiiivtH~~~~~~~~~d~v~~ 217 (250)
T PRK14245 141 KESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--D-YTIVIVTHNMQQAARVSDKTAF 217 (250)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHhhCCEEEE
Confidence 234457999999999999999999999999999999999999999999999842 3 5677788999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|++++.|+++++.
T Consensus 218 l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 218 FYMGEMVEYDDTKKIF 233 (250)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999998874
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=315.55 Aligned_cols=207 Identities=22% Similarity=0.294 Sum_probs=164.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC--C-ceEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT--G-GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
.+.+|+|+|+++++||++||+|+||||||||+++|+|... + .+.+|+|.++|.+... ...++.++|++|++.
T Consensus 17 ~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 17 KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 3569999999999999999999999999999999999643 1 1247999999987531 234567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++ .|++||+.+....+... ..+..++.+.+.++.+++........ ...+..||+|||||++||++|+.+|++++|
T Consensus 97 ~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~-~~~~~~LS~Gq~qrv~laral~~~p~llll 172 (252)
T PRK14255 97 PFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHL-HESALSLSGGQQQRVCIARVLAVKPDVILL 172 (252)
T ss_pred cCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 887 69999998865433211 12222345667788877642111111 112457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|+++++ +.|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 231 (252)
T PRK14255 173 DEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFLT-GNLIEFADT 231 (252)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999865 589999999986 46778999999985 799988874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=320.41 Aligned_cols=201 Identities=23% Similarity=0.306 Sum_probs=164.3
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|++|++||+++|+|+||||||||+++|+|.... .+.+|+|.++|.+... ...++.++|++|++.
T Consensus 51 ~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~ 130 (285)
T PRK14254 51 DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN 130 (285)
T ss_pred CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 35699999999999999999999999999999999998542 1358999999987532 234668999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++. ||+||+.+....+. ... ...+.++++++.+++.+ ..+.. +..||||||||++||++|+.+|+
T Consensus 131 l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p~ 200 (285)
T PRK14254 131 PFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS-----GLDLSGGQQQRLCIARAIAPDPE 200 (285)
T ss_pred cCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCC
Confidence 7775 99999988654432 111 23456788999998853 22332 45799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEE-EEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL-FMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~gG~~~~~G~~ 1054 (1419)
||+|||||+|||+.+...+.+.|+++++ ++|||+++|++. .+...+|+++ +|+ .|+++..|+.
T Consensus 201 lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l~-~G~i~~~g~~ 264 (285)
T PRK14254 201 VILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFLT-GGELVEFDDT 264 (285)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEee-CCEEEEeCCH
Confidence 9999999999999999999999999976 489999999976 4667899976 456 5899988874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=316.08 Aligned_cols=207 Identities=24% Similarity=0.319 Sum_probs=167.9
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC--CeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+.+++||+++|+|||||||||||++|+|.+.+.. +.+|+|.++|+++... ..++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (258)
T PRK14241 18 HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPF 97 (258)
T ss_pred eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccccC
Confidence 59999999999999999999999999999999999986421 3599999999876421 1246799999999889
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc----cccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT----CADT 297 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt 297 (1419)
+.+||+||+.++....+.... ......++.+++.+||.. ..++
T Consensus 98 ~~~tv~~nl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (258)
T PRK14241 98 PTMSIRDNVVAGLKLNGVRNK---------------------------------KDLDELVEKSLRGANLWNEVKDRLDK 144 (258)
T ss_pred CCCcHHHHHHHHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhHhhC
Confidence 999999999876432210000 001123566788888842 2333
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.+++|+
T Consensus 145 -----~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tviivsH~~~~~~~~~d~ 216 (258)
T PRK14241 145 -----PGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--D-YTIVIVTHNMQQAARVSDQ 216 (258)
T ss_pred -----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEecCHHHHHHhCCE
Confidence 3457999999999999999999999999999999999999999999998853 3 5677788999999999999
Q ss_pred EEEEc------CCeEEEEcChhhHH
Q 000562 378 VILLS------EGQIVYQGPRVSVL 396 (1419)
Q Consensus 378 vilL~------~G~iv~~G~~~~~~ 396 (1419)
|++|+ +|++++.|+++++.
T Consensus 217 i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 217 TAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEecccCCCCceEEecCCHHHHH
Confidence 99997 79999999987763
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-33 Score=315.44 Aligned_cols=207 Identities=24% Similarity=0.327 Sum_probs=165.7
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---cccc-eEEEEccCCCCCCCc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFAR-ISGYCEQNDIHSPGL 917 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~~~~-~~gyv~Q~d~~~~~l 917 (1419)
+.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.... ..++ .++|++|++.+++.+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~ 99 (252)
T CHL00131 20 NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV 99 (252)
T ss_pred EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccccc
Confidence 469999999999999999999999999999999999621124689999999875431 2222 478999999999999
Q ss_pred cHHHHHHHHhhhcCC----CCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 918 TVLESLLFSAWLRLP----SEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~----~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
|+.|++.+....... .+....+..+.++++++.+++. +..+...+ ..||||||||++||++|+.+|+|++|
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LSgG~~qrv~la~al~~~p~llll 175 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN----EGFSGGEKKRNEILQMALLDSELAIL 175 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----cCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999875432110 1111222345678889999986 34444322 25999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-cCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.++..+.+.|++++++|+|||+++|+++. +... +|++++|++ |++++.|+.
T Consensus 176 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 236 (252)
T CHL00131 176 DETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQN-GKIIKTGDA 236 (252)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeC-CEEEEecCh
Confidence 99999999999999999999998779999999999763 4444 799999985 899999986
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-33 Score=317.19 Aligned_cols=211 Identities=21% Similarity=0.304 Sum_probs=167.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+.|++|++++|+|||||||||||++|+|.+++. .+.+|+|+++|+++... ..++.++|++|++..+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 112 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPF 112 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCCC
Confidence 5999999999999999999999999999999999998641 13589999999887532 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+. ||.||+.|+....+.... + .+....++.+++.+||.+...... +
T Consensus 113 ~~-tv~enl~~~~~~~~~~~~--------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 158 (267)
T PRK14235 113 PK-SIYENVAYGPRIHGLARS--------K------------------------AELDEIVETSLRKAGLWEEVKDRL-H 158 (267)
T ss_pred CC-cHHHHHHHHHHhcccccc--------h------------------------HHHHHHHHHHHHHcCCchhhhHHh-h
Confidence 74 999999886533211000 0 001123567888889864211111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..++.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + .+|+.++|+..++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~-~tiiivtH~~~~~~~~~d~v~~l 235 (267)
T PRK14235 159 EPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--N-YTIVIVTHSMQQAARVSQRTAFF 235 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--C-CeEEEEEcCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998854 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++.+|+.+++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 236 HLGNLVEVGDTEKMF 250 (267)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887763
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=348.15 Aligned_cols=204 Identities=27% Similarity=0.345 Sum_probs=171.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++.
T Consensus 16 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 16 GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ--PDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 3569999999999999999999999999999999999865 468999999987532 1235679999999988999
Q ss_pred ccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 917 lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
+||+||+.+....+........+.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lllLDEPt 168 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL-----KYLSIGQRQMVEIAKALARNARVIAFDEPT 168 (501)
T ss_pred CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 999999988532111111123334556889999999986666543 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCC
Q 000562 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~ 1053 (1419)
+|||+.+...+.+.|++++++|+|||+++|+++ ++...+|++++|++ |+++..++
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~ 223 (501)
T PRK11288 169 SSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVATFD 223 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecC
Confidence 999999999999999999888999999999986 56678999999985 78887665
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=329.33 Aligned_cols=226 Identities=26% Similarity=0.384 Sum_probs=191.6
Q ss_pred cccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc----ccccceEEEE
Q 000562 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYC 907 (1419)
Q Consensus 832 ~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gyv 907 (1419)
+++.++.++..++|+|||++++|||++||||.||||||||+|+|+|..+ +.+|+|.+||.+... .....-++.|
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V 88 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATV 88 (500)
T ss_pred eecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEE
Confidence 4455556677899999999999999999999999999999999999876 569999999987642 2334568999
Q ss_pred ccCCCCCCCccHHHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhC
Q 000562 908 EQNDIHSPGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1419)
Q Consensus 908 ~Q~d~~~~~lTv~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~ 986 (1419)
.|+..+.|++||.||+.++...+.+ .-++.+...+...++++.+++....++.++ .||+||||.|.|||||..+
T Consensus 89 ~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~LsiaqrQ~VeIArAl~~~ 163 (500)
T COG1129 89 HQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLSIAQRQMVEIARALSFD 163 (500)
T ss_pred eechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999877544432 224556667788999999999644666654 7999999999999999999
Q ss_pred CCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC-CC-chhHHHHH
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL-GS-KSCELIKY 1064 (1419)
Q Consensus 987 p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~-~~-~~~~~~~~ 1064 (1419)
++||+||||||.|+......+.+.++++.++|.+||.+||.++ ++++.+||+.||.+ |+.+..++. ++ +.+++++.
T Consensus 164 arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRD-G~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 164 ARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeC-CEEeeecccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999987 89999999999986 799998883 44 44456655
Q ss_pred HH
Q 000562 1065 FE 1066 (1419)
Q Consensus 1065 f~ 1066 (1419)
.-
T Consensus 242 Mv 243 (500)
T COG1129 242 MV 243 (500)
T ss_pred hh
Confidence 43
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=348.29 Aligned_cols=210 Identities=23% Similarity=0.416 Sum_probs=174.0
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.++|+++.++ +++.+|+|+|++|+|||.+||+|+||||||||+++|+|... +.+|+|.+||.++
T Consensus 473 ~I~~~~vsf~y~------------~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~--p~~G~I~idg~~i 538 (708)
T TIGR01193 473 DIVINDVSYSYG------------YGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ--ARSGEILLNGFSL 538 (708)
T ss_pred cEEEEEEEEEcC------------CCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC--CCCcEEEECCEEH
Confidence 577888877653 12469999999999999999999999999999999999876 5689999999886
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-------ccCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-------~~~~~~g~~~ 965 (1419)
.+ ..+++.+|||+|++.+++. |++||+.++.. .+.+. +.++++++..++.+ -.|+.+|..+
T Consensus 539 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G 609 (708)
T TIGR01193 539 KDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEEG 609 (708)
T ss_pred HHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCCC
Confidence 43 4677889999999988865 99999987521 12222 23566666666643 2356676543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
.+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 610 -~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~- 683 (708)
T TIGR01193 610 -SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH- 683 (708)
T ss_pred -CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999985 5899999999986 5688999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 684 G~i~~~G~~ 692 (708)
T TIGR01193 684 GKIIEQGSH 692 (708)
T ss_pred CEEEEECCH
Confidence 799999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=316.14 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=166.5
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|++|++||+++|+|||||||||||++|+|.+. |..+.+|+|+++|+++... ..++.++|++|++.++
T Consensus 26 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 59999999999999999999999999999999999986 3223589999999987431 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+. ||+||+.|.....+.... .+....++.+++.+||.+...... +
T Consensus 106 ~~-tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~l-~ 150 (259)
T PRK14274 106 PQ-SIFDNVAYGPRIHGTKNK---------------------------------KKLQEIVEKSLKDVALWDEVKDRL-H 150 (259)
T ss_pred cc-CHHHHHHhHHHhcCCCCH---------------------------------HHHHHHHHHHHHHcCCchhhhhhh-h
Confidence 75 999999876432211000 001123556777888753211111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.||||||||++|||+|+.+|++++|||||+|||..++..+.+.|+++.. +.+++.++|+..++.+++|++++|
T Consensus 151 ~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l 227 (259)
T PRK14274 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE---KYTIVIVTHNMQQAARVSDQTAFF 227 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEEcCHHHHHHhCCEEEEE
Confidence 34457999999999999999999999999999999999999999999998853 356667889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++.+|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988763
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-33 Score=314.49 Aligned_cols=212 Identities=21% Similarity=0.288 Sum_probs=168.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCCC-----CCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|... +..+.+|+|+++|.++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 369999999999999999999999999999999999875 22235899999998764321 24679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++. ||+||+.+.....+.....+ .....++.+++.+||.+...+.+
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~~~--------------------------------~~~~~~~~~l~~~~l~~~~~~~~- 143 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKNKK--------------------------------KLDEIVEKSLTSVGLWEELGDRL- 143 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCCHH--------------------------------HHHHHHHHHHHHcCCCchhhhHh-
Confidence 775 99999987633221100000 01123567788899865322222
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+...+.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ +.+|+.++|+..++.+++|+|++
T Consensus 144 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~ 220 (251)
T PRK14244 144 KDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK---NFTIIVVTHSMKQAKKVSDRVAF 220 (251)
T ss_pred hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHhhcCEEEE
Confidence 234457999999999999999999999999999999999999999999998742 46677788999999999999999
Q ss_pred EcCCeEEEEcChhhHH
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1419)
|++|++++.|+.+++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999887763
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=320.44 Aligned_cols=204 Identities=24% Similarity=0.415 Sum_probs=165.0
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCC--CCccH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTV 919 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lTv 919 (1419)
+.+|+|+|++|++||++||+||||||||||+++|+|..+ +.+|+|.++|.+......++.++|++|++.+. ...++
T Consensus 20 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~ 97 (272)
T PRK15056 20 HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLV 97 (272)
T ss_pred cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEhHHhhccceEEEeccccccccCCCcch
Confidence 469999999999999999999999999999999999866 46899999998764332334689999997642 23578
Q ss_pred HHHHHHHhhhcCC-CCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCC
Q 000562 920 LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 920 ~E~l~f~a~lr~~-~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsg 998 (1419)
+|++.+....... .........+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++++|||||+|
T Consensus 98 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG~~qrv~laraL~~~p~llllDEPt~~ 172 (272)
T PRK15056 98 EDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGGQKKRVFLARAIAQQGQVILLDEPFTG 172 (272)
T ss_pred hhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 8988654211000 00111223445778899999988777654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 999 LD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|+..
T Consensus 173 LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g~~~ 226 (272)
T PRK15056 173 VDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASGPTE 226 (272)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 9999999999999999877999999999976 567889999766 4 7999999864
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=312.93 Aligned_cols=210 Identities=20% Similarity=0.263 Sum_probs=163.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCCC-----CCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+.+++||+++|+|||||||||||++|+|..+ +..+.+|+|.++|+++.... .++.++|++|++.++
T Consensus 35 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 59999999999999999999999999999999999764 21135899999999875321 245799999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+. ||+||+.++....+.. .+ . ..+..++..++.+++........ +
T Consensus 115 ~~-tv~enl~~~~~~~~~~--~~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 159 (268)
T PRK14248 115 PK-SIYNNITHALKYAGER--RK---S----------------------------VLDEIVEESLTKAALWDEVKDRL-H 159 (268)
T ss_pred cc-cHHHHHHHHHHhcCCC--cH---H----------------------------HHHHHHHHHHHHcCCCcchHHHH-h
Confidence 75 9999998754321100 00 0 00112445667777742110111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..+..||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|+.++|+..++.+++|+|++|
T Consensus 160 ~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~~~~~~d~v~~l 236 (268)
T PRK14248 160 SSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--E-YSIIIVTHNMQQALRVSDRTAFF 236 (268)
T ss_pred cCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--C-CEEEEEEeCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999853 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 237 ~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 237 LNGDLVEYDQTEQIF 251 (268)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=318.79 Aligned_cols=205 Identities=23% Similarity=0.260 Sum_probs=162.9
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCC---CceEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~---~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
..+|+|+|++|++||++||+|+||||||||+++|+|..+ ..+.+|+|.++|.+... ..+++.++|++|++.+
T Consensus 37 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 116 (271)
T PRK14238 37 DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNP 116 (271)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCcc
Confidence 458999999999999999999999999999999999753 11368999999987532 2345679999999888
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
++ .|++||+.+....+.. ...+..++.+.++++.+++.. +.+.. . ..+..||||||||++||++|+.+|++|+|
T Consensus 117 ~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~-~-~~~~~LSgGe~qrv~laraL~~~p~lllL 191 (271)
T PRK14238 117 FP-KSIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRL-H-DNAYGLSGGQQQRLCIARCLAIEPDVILM 191 (271)
T ss_pred cc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHH-h-cCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 77 4999999886543211 112222345667777765421 11111 1 12457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 192 DEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~~-G~i~~~g~~ 250 (271)
T PRK14238 192 DEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFLN-GYVNEYDDT 250 (271)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999875 799999999976 46678999999985 799998874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-33 Score=311.88 Aligned_cols=205 Identities=26% Similarity=0.403 Sum_probs=159.0
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|+++++||+++|+|||||||||||++|+|.+++. +|+|.++|.++.... .++.++|++|++.++ +.
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~-~~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLF-NR 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhc-cc
Confidence 35999999999999999999999999999999999999775 999999998765432 245799999998766 57
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHh--CCcccccccccCc
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1419)
||+||+.+... . ...+...+... ....+..++.+ |++...+ .
T Consensus 91 tv~~nl~~~~~--~--~~~~~~~~~~~---------------------------~~~~~~~l~~l~~~~~~~~~-----~ 134 (237)
T cd03252 91 SIRDNIALADP--G--MSMERVIEAAK---------------------------LAGAHDFISELPEGYDTIVG-----E 134 (237)
T ss_pred hHHHHhhccCC--C--CCHHHHHHHHH---------------------------HcCcHHHHHhCcccccchhh-----c
Confidence 99999987432 1 00010000000 00012334444 4443333 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
.++.|||||||||+||||++.+|++++|||||+|||+.++..+.+.|+++++ +++|+.++|+..++ ..+|++++|+
T Consensus 135 ~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~-~~~d~v~~l~ 210 (237)
T cd03252 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA---GRTVIIIAHRLSTV-KNADRIIVME 210 (237)
T ss_pred CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC---CCEEEEEeCCHHHH-HhCCEEEEEE
Confidence 4457999999999999999999999999999999999999999999998852 45566677888887 4699999999
Q ss_pred CCeEEEEcChhhHH
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1419)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (237)
T cd03252 211 KGRIVEQGSHDELL 224 (237)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999987764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.53 Aligned_cols=210 Identities=20% Similarity=0.313 Sum_probs=167.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCCC-----CCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV-----PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+++++||+++|+|||||||||||++|+|..++. .+.+|+|.++|+++.... .++.++|++|++.++
T Consensus 18 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14270 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPF 97 (251)
T ss_pred eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCcC
Confidence 5999999999999999999999999999999999987642 135899999999875321 245699999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ +|++||+.|.....+.... .+....++.+++.+||.+...... +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14270 98 P-MSIYDNVAYGPRIHGIKDK---------------------------------KELDKIVEWALKKAALWDEVKDDL-K 142 (251)
T ss_pred C-CcHHHHHHhHHHhcCCCcH---------------------------------HHHHHHHHHHHHHcCCchhhhhHh-h
Confidence 6 8999999886433211000 001123556778888742110111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.||||||||++||++++.+|++++|||||+|||+.++.++.+.|+++.+ + ++++.++|+..++.+++|++++|
T Consensus 143 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~d~v~~l 219 (251)
T PRK14270 143 KSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--E-YTIVIVTHNMQQASRVSDYTAFF 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--C-CeEEEEEcCHHHHHHhcCEEEEE
Confidence 34457999999999999999999999999999999999999999999998864 3 56677889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 220 LMGDLIEFNKTEKIF 234 (251)
T ss_pred ECCeEEEeCCHHHHh
Confidence 999999999988764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=311.76 Aligned_cols=197 Identities=22% Similarity=0.338 Sum_probs=160.6
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~l 917 (1419)
++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++ .
T Consensus 19 ~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~ 95 (225)
T PRK10247 19 DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D 95 (225)
T ss_pred CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEcCcCCHHHHHhccEEEeccccccc-c
Confidence 3569999999999999999999999999999999999865 468999999986532 234567899999988876 5
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPT 996 (1419)
|++||+.+....+.. . ..++.++++++.+++. ...+.. +..||+|||||++||++|+.+|++++|||||
T Consensus 96 tv~enl~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 96 TVYDNLIFPWQIRNQ---Q--PDPAIFLDDLERFALPDTILTKN-----IAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred cHHHHHHhHHhhcCC---C--hHHHHHHHHHHHcCCChHHhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999876443321 1 1124567899999995 344544 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 997 SGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 997 sgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
+|||+.+...+.+.|++++++ |.|||+++|+++. + +.+|++++|.+.+..+..|
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~-~~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 166 SALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-I-NHADKVITLQPHAGEMQEA 220 (225)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-H-HhCCEEEEEecccchHhhh
Confidence 999999999999999998764 8999999999863 4 5699999996433344444
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=347.03 Aligned_cols=208 Identities=24% Similarity=0.341 Sum_probs=164.1
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|. +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 35899999999999999999999999999999999999876 9999999999876543 4689999999987765
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++||+.+... ....+.+.++++. ...++.++. |++..||.+|+. .
T Consensus 407 ti~~Ni~~~~~----~~~~~~~~~~~~~---------------------------~~~~~~i~~--l~~gl~t~~~~~-g 452 (544)
T TIGR01842 407 TVAENIARFGE----NADPEKIIEAAKL---------------------------AGVHELILR--LPDGYDTVIGPG-G 452 (544)
T ss_pred cHHHHHhccCC----CCCHHHHHHHHHH---------------------------hChHHHHHh--CccccccccCCC-c
Confidence 99999975321 0111111111100 001233333 456678999864 5
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
++||||||||++||||++++|++++|||||||||+.++.++.+.|+++.. .++ +++.++|+.+ ..+.+|+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~-tvi~ith~~~-~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGI-TVVVITHRPS-LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCC-EEEEEeCCHH-HHHhCCEEEEEECC
Confidence 68999999999999999999999999999999999999999999998753 234 4555666665 45789999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
++++.|+++++.
T Consensus 530 ~i~~~g~~~~l~ 541 (544)
T TIGR01842 530 RIARFGERDEVL 541 (544)
T ss_pred EEEeeCCHHHHh
Confidence 999999988774
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=314.10 Aligned_cols=205 Identities=25% Similarity=0.319 Sum_probs=165.9
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--c--eEEEEEEECCccCC---cccccceEEEEccCCC
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G--IIEGDIYISGYPKR---QETFARISGYCEQNDI 912 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~--~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~d~ 912 (1419)
+++.+|+|+|+++++||+++|+|+||||||||+++|+|.... | .+.|++.++|.+.. ...+++.++|++|++.
T Consensus 21 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~ 100 (257)
T PRK14246 21 NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN 100 (257)
T ss_pred CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc
Confidence 456799999999999999999999999999999999997542 1 12366666666542 1234567999999999
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc----ccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS----LSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~----~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ 988 (1419)
+++.+|++||+.+....... ...++..+.++++++.+++.+ ..+.. +..||+|||||++|||+|+.+|+
T Consensus 101 ~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~~~LS~G~~qrl~laral~~~P~ 173 (257)
T PRK14246 101 PFPHLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSP-----ASQLSGGQQQRLTIARALALKPK 173 (257)
T ss_pred cCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCC-----cccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999887433211 122334456788999999864 22332 45799999999999999999999
Q ss_pred cceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 989 illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+++|||||+|||..+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|++ |+++..|+.
T Consensus 174 llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~-g~i~~~g~~ 236 (257)
T PRK14246 174 VLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN-GELVEWGSS 236 (257)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999999864 699999999976 46688999999985 799998875
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=315.38 Aligned_cols=203 Identities=27% Similarity=0.308 Sum_probs=164.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCcc-----CCc---c----cccceEEEEc
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-----KRQ---E----TFARISGYCE 908 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~-----~~~---~----~~~~~~gyv~ 908 (1419)
...+|+|+|++|++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+ ... . ..++.++|++
T Consensus 15 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 15 GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA--PDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 3468999999999999999999999999999999999876 468999999976 321 1 1234689999
Q ss_pred cCCC--CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCcc-ccCCcccCCCCCCCCHHHHHHHHHHHHHhh
Q 000562 909 QNDI--HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1419)
Q Consensus 909 Q~d~--~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~-~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~ 985 (1419)
|++. ..+.+|+.|++.+..... .. .......+.++++++.+++.+ ..+.. ++.||||||||++|||+|+.
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~-----~~~LSgG~~qrv~laral~~ 165 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL-----PRAFSGGMQQRLQIARNLVT 165 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-----chhcCHHHHHHHHHHHHHhc
Confidence 9874 345679999987543211 10 111223456788999999963 45543 35799999999999999999
Q ss_pred CCCcceeeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 986 ~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|++. .+.+.+|++++|++ |+++..|+.
T Consensus 166 ~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 166 RPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLVMQQ-GRVVESGLT 233 (253)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEECCH
Confidence 99999999999999999999999999998754 899999999976 46678999999985 799998874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=314.98 Aligned_cols=208 Identities=20% Similarity=0.283 Sum_probs=163.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|++|++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 106 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPF 106 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccc
Confidence 5999999999999999999999999999999999987631 13599999999876421 1235699999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.+++...+.. + + ....++.+++.+++....+... +
T Consensus 107 ~-~tv~enl~~~~~~~~~~---~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~-~ 149 (269)
T PRK14259 107 P-KSIYENIAFGARINGYT---G---D-----------------------------MDELVERSLRKAAVWDECKDKL-N 149 (269)
T ss_pred h-hhHHHHHhhhhhhcCCc---H---H-----------------------------HHHHHHHHHHHhCCcchhhhhh-C
Confidence 7 59999998865432110 0 0 0112345666676642111111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ +++|+.++|+..++.+++|++++|
T Consensus 150 ~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~---~~tiiivtH~~~~~~~~~d~i~~l 226 (269)
T PRK14259 150 ESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK---NFTIVIVTHNMQQAVRVSDMTAFF 226 (269)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhcCEEEEE
Confidence 33457999999999999999999999999999999999999999999998853 356777899999999999999999
Q ss_pred cC-----------CeEEEEcChhhHH
Q 000562 382 SE-----------GQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~-----------G~iv~~G~~~~~~ 396 (1419)
++ |++++.|+++++.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred eccccccccccccceEEEeCCHHHHH
Confidence 96 6789999988874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=315.03 Aligned_cols=198 Identities=24% Similarity=0.271 Sum_probs=161.2
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
.+|+|+|+.|++||+++|+|||||||||||++|+|.++ . +|+|.++|.++..... ++.++||+|++.+++ .|
T Consensus 18 ~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~---~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~-~t 92 (275)
T cd03289 18 AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFS-GT 92 (275)
T ss_pred cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-C---CcEEEECCEEhhhCCHHHHhhhEEEECCCcccch-hh
Confidence 48999999999999999999999999999999999985 3 7999999998765432 467999999999886 59
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCC-------ccccccc
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-------DTCADTL 298 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL-------~~~~dt~ 298 (1419)
|+||+..... ...+ .+...++.+|| +...||.
T Consensus 93 v~~nl~~~~~-----~~~~------------------------------------~~~~~l~~~gL~~~~~~~p~~l~~~ 131 (275)
T cd03289 93 FRKNLDPYGK-----WSDE------------------------------------EIWKVAEEVGLKSVIEQFPGQLDFV 131 (275)
T ss_pred HHHHhhhccC-----CCHH------------------------------------HHHHHHHHcCCHHHHHhCcccccce
Confidence 9999963211 0000 01222333343 3445677
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+++ ..+.||||||||++||||++.+|++++|||||++||+.+...+.+.|++.. .+++|++++|....+. .+|+|
T Consensus 132 ~~~-~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~---~~~tii~isH~~~~i~-~~dri 206 (275)
T cd03289 132 LVD-GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF---ADCTVILSEHRIEAML-ECQRF 206 (275)
T ss_pred ecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEECCHHHHH-hCCEE
Confidence 765 567899999999999999999999999999999999999999999999763 2466777888887775 49999
Q ss_pred EEEcCCeEEEEcChhhHHH
Q 000562 379 ILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~~ 397 (1419)
++|++|++++.|++++++.
T Consensus 207 ~vl~~G~i~~~g~~~~l~~ 225 (275)
T cd03289 207 LVIEENKVRQYDSIQKLLN 225 (275)
T ss_pred EEecCCeEeecCCHHHHhh
Confidence 9999999999999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=316.29 Aligned_cols=196 Identities=26% Similarity=0.421 Sum_probs=154.8
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCcc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV--PENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 468999999999999999999999999999999999876 458999999987532 234567999999987764 69
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHH-----HHHHHHHHHc--CCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 919 VLESLLFSAWLRLPSEIELETQR-----AFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l--~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
|+||+.+... ........ ...++.++.+ ++....+. .+..|||||||||+|||+|+.+|++++
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-----~~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE-----QGAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc-----CCCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976431 11111100 0112233333 23222222 246899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.+...+.+.|++++ +|+|||+++|+++ ++ +.+|++++|.+ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999986 4899999999986 34 56999999985 799999875
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=307.61 Aligned_cols=186 Identities=28% Similarity=0.360 Sum_probs=157.0
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHH
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
+..+|+|+|++|++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+......++.++|++|++.+++.+|++
T Consensus 14 ~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 4569999999999999999999999999999999999865 46899999998653222566789999998888899999
Q ss_pred HHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCC
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1419)
Q Consensus 921 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD 1000 (1419)
|++.+....+. .. .+.++++++.+++.+..+... +.||||||||++||++|+.+|++++|||||+|||
T Consensus 92 ~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD 159 (207)
T PRK13539 92 ENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALD 159 (207)
T ss_pred HHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99987654321 11 134788999999987665543 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe
Q 000562 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1419)
Q Consensus 1001 ~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~ 1043 (1419)
+.+...+.+.|++++++|+|||+++|++. ++ .. |+++.+.
T Consensus 160 ~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~~ 199 (207)
T PRK13539 160 AAAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEeec
Confidence 99999999999998878999999999975 33 34 8887774
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=362.52 Aligned_cols=208 Identities=28% Similarity=0.409 Sum_probs=175.1
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~ 895 (1419)
.+.++|+++.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..+ +.+|+|.+||.+.
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~--p~~G~I~idg~~i 517 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET--PESGSVFYDGQDL 517 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEc
Confidence 5788888877631 23469999999999999999999999999999999999876 5689999999986
Q ss_pred Cc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccc-------cCCcccCCC
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~-------~~~~~g~~~ 965 (1419)
.+ ..+++.+|||+|++.+++. |++||+.++. + .+ ++.++++++..++.+. .|+.+|..+
T Consensus 518 ~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G 586 (686)
T TIGR03797 518 AGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEGG 586 (686)
T ss_pred CcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCCC
Confidence 53 4678889999999988764 9999998742 1 22 2346777887777643 356666543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|+|++|++
T Consensus 587 -~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~- 659 (686)
T TIGR03797 587 -GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA- 659 (686)
T ss_pred -CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC-
Confidence 579999999999999999999999999999999999999999999886 689999999975 5678999999985
Q ss_pred CEEEEeCCC
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 660 G~iv~~G~~ 668 (686)
T TIGR03797 660 GRVVQQGTY 668 (686)
T ss_pred CEEEEECCH
Confidence 899999985
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=274.44 Aligned_cols=202 Identities=25% Similarity=0.378 Sum_probs=171.7
Q ss_pred CCCcceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC-------CceEEEEc
Q 000562 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVS 215 (1419)
Q Consensus 143 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~ 215 (1419)
....+.+||++|++.|++||-++|+|||||||||||-+|+|+-.++ +|+|.+.|+++..+.. .+.+|+|+
T Consensus 18 ~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~s---sGeV~l~G~~L~~ldEd~rA~~R~~~vGfVF 94 (228)
T COG4181 18 QGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS---SGEVRLLGQPLHKLDEDARAALRARHVGFVF 94 (228)
T ss_pred CCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCC---CceEEEcCcchhhcCHHHHHHhhccceeEEE
Confidence 3446789999999999999999999999999999999999998776 9999999999876542 37899999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccc
Q 000562 216 QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1419)
Q Consensus 216 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1419)
|.-.++|+||..||+...+.+++.+.+ +........|+.+||.+..
T Consensus 95 QSF~Lip~ltAlENV~lPleL~ge~~~----------------------------------~~~~~A~~lL~~vGLg~Rl 140 (228)
T COG4181 95 QSFHLIPNLTALENVALPLELRGESSA----------------------------------DSRAGAKALLEAVGLGKRL 140 (228)
T ss_pred EeeeccccchhhhhccchhhhcCCccc----------------------------------cHHHHHHHHHHHhCccccc
Confidence 999999999999999988777653221 0112356688999998876
Q ss_pred cccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhc
Q 000562 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1419)
Q Consensus 296 dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~ 375 (1419)
+-. +.+|||||+|||+||||+...|+|||-||||-.||..|..+|.+.|..+.+.. +++++.++|+ +....-|
T Consensus 141 ~Hy-----P~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~-G~TlVlVTHD-~~LA~Rc 213 (228)
T COG4181 141 THY-----PAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRER-GTTLVLVTHD-PQLAARC 213 (228)
T ss_pred ccC-----ccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhc-CceEEEEeCC-HHHHHhh
Confidence 544 45799999999999999999999999999999999999999999999998764 5667667666 4566789
Q ss_pred CeEEEEcCCeEEE
Q 000562 376 DDVILLSEGQIVY 388 (1419)
Q Consensus 376 D~vilL~~G~iv~ 388 (1419)
||++-|.+|+++.
T Consensus 214 ~R~~r~~~G~l~~ 226 (228)
T COG4181 214 DRQLRLRSGRLVE 226 (228)
T ss_pred hheeeeecceecc
Confidence 9999999999874
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=316.40 Aligned_cols=195 Identities=27% Similarity=0.378 Sum_probs=156.5
Q ss_pred eeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCccH
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 843 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|+
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 68999999999999999999999999999999999876 468999999986532 234567999999988776 699
Q ss_pred HHHHHHHhhhcCCCCCcHHHH-----HHHHHHHHHHc--CCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 920 LESLLFSAWLRLPSEIELETQ-----RAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~-----~~~v~~vl~~l--~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+||+.+.... ...... ...+++.++.+ ++.+..+.. +..||+|||||++||++|+.+|++++|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 111111 11234444444 444443332 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.+...+.+.|+++. +|+|||+++|+++ ++ +.+|++++|.+ |+++..|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999986 4899999999986 34 45999999986 788888874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=379.43 Aligned_cols=213 Identities=24% Similarity=0.363 Sum_probs=168.5
Q ss_pred ceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--------------------------------------
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-------------------------------------- 188 (1419)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-------------------------------------- 188 (1419)
+.+||+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 346999999999999999999999999999999999999872
Q ss_pred -------------CCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHH
Q 000562 189 -------------LQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252 (1419)
Q Consensus 189 -------------~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ 252 (1419)
.+.+|+|++||+++++... ++.++||+|++.+| +.||+|||.++.. ....+.+.++++.
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTIreNI~~g~~----~at~eeI~~A~k~ 1334 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSIYENIKFGKE----DATREDVKRACKF 1334 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccHHHHHhcCCC----CCCHHHHHHHHHH
Confidence 0248999999999987654 57899999999866 6799999998632 1111112222211
Q ss_pred HHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEec
Q 000562 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332 (1419)
Q Consensus 253 e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDE 332 (1419)
++ .++. +-.|++.+||.||+. ..+||||||||++|||||+++|+||+|||
T Consensus 1335 ---A~------------------------l~~f--I~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1335 ---AA------------------------IDEF--IESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred ---cC------------------------CHHH--HHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 00 0111 235889999999965 45799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcC----CeEE-EEcChhhHH
Q 000562 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE----GQIV-YQGPRVSVL 396 (1419)
Q Consensus 333 ptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~----G~iv-~~G~~~~~~ 396 (1419)
|||+||+.++..|.+.|++.....++| +|++.|.. ...+.+|+|++|++ |+++ ++|++++++
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~T-vIiIaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKT-IITIAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCE-EEEEechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999874222345 44466666 44577999999999 9955 899999986
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=312.02 Aligned_cols=210 Identities=23% Similarity=0.348 Sum_probs=165.3
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCC--CCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH--HLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|++|++||+++|+|||||||||||++|+|.+++ ..+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 599999999999999999999999999999999998753 223589999999987531 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ +||+||+.++....+.... + .....++++++.+++.+...... +
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 141 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-K--------------------------------KLDEIVEKSLKGAALWDEVKDRL-K 141 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-H--------------------------------HHHHHHHHHHHHcCCchhhHHHH-h
Confidence 7 8999999886433211000 0 01123455667777642111111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..+..|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+++|++++|
T Consensus 142 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiii~sH~~~~~~~~~d~v~~l 218 (250)
T PRK14240 142 KSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK---DYTIVIVTHNMQQASRISDKTAFF 218 (250)
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEEeCHHHHHhhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998843 356677889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 219 LNGEIVEFGDTVDLF 233 (250)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999887763
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=316.77 Aligned_cols=218 Identities=22% Similarity=0.268 Sum_probs=170.5
Q ss_pred eeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCc---eEEEEEEECC
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGG---IIEGDIYISG 892 (1419)
Q Consensus 816 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~---~~~G~i~i~g 892 (1419)
.+.++|+++.. +++.+|+|+|+++++||+++|+|+||||||||+++|+|..... +.+|+|.++|
T Consensus 20 ~l~~~nl~~~~-------------~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 86 (274)
T PRK14265 20 VFEVEGVKVFY-------------GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRD 86 (274)
T ss_pred eEEEeeEEEEe-------------CCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECC
Confidence 45666665543 2346999999999999999999999999999999999975311 2479999999
Q ss_pred ccCCc-----ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCC
Q 000562 893 YPKRQ-----ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967 (1419)
Q Consensus 893 ~~~~~-----~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~ 967 (1419)
.+... ..+++.++|++|++.+++. |+.|++.+....+. .. ...++.+++.++.+++......... ..+.
T Consensus 87 ~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 160 (274)
T PRK14265 87 RNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLK-EKGT 160 (274)
T ss_pred EecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhc-CCcc
Confidence 87532 2345679999999887764 99999987643321 11 1123445677888776421111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEe----
Q 000562 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK---- 1043 (1419)
Q Consensus 968 ~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~---- 1043 (1419)
.||||||||++|||+|+.+|++|||||||+|||+.+...+.+.|+++++ ++|||+++|+++ .+.+.+|++++|+
T Consensus 161 ~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~~~~ 238 (274)
T PRK14265 161 ALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFFNTEID 238 (274)
T ss_pred cCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999865 799999999986 5778899999997
Q ss_pred ----cCCEEEEeCCC
Q 000562 1044 ----RGGELIYAGPL 1054 (1419)
Q Consensus 1044 ----~gG~~~~~G~~ 1054 (1419)
+.|++++.|+.
T Consensus 239 ~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 239 EYGKRRGKLVEFSPT 253 (274)
T ss_pred cccccCceEEEeCCH
Confidence 25899999986
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=314.12 Aligned_cols=211 Identities=23% Similarity=0.305 Sum_probs=169.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCCC----CCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~ 221 (1419)
+++|+|+|++|++||+++|+||||||||||+++|+|.++|. .+.+|+|.++|+++.+.. .++.++|++|++.++
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~ 113 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPF 113 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCccC
Confidence 36999999999999999999999999999999999998751 135899999998875431 246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.++...... .. .. +....++.+++.+||.+..++.. +
T Consensus 114 ~-~tv~eni~~~~~~~~~---~~----------------~~--------------~~~~~~~~~l~~~~l~~~~~~~l-~ 158 (276)
T PRK14271 114 P-MSIMDNVLAGVRAHKL---VP----------------RK--------------EFRGVAQARLTEVGLWDAVKDRL-S 158 (276)
T ss_pred C-ccHHHHHHHHHHhccC---CC----------------HH--------------HHHHHHHHHHHHcCCCchhhhHh-h
Confidence 7 8999999875432100 00 00 01123456778888865332222 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..++.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ + ++|++++|+..++.+++|++++|
T Consensus 159 ~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~-~tiiivsH~~~~~~~~~dri~~l 235 (276)
T PRK14271 159 DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--R-LTVIIVTHNLAQAARISDRAALF 235 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998864 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+++++.
T Consensus 236 ~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 236 FDGRLVEEGPTEQLF 250 (276)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988774
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=311.31 Aligned_cols=195 Identities=27% Similarity=0.425 Sum_probs=159.4
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCcc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+.+|+|+|+++++|++++|+||||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 469999999999999999999999999999999999865 458999999986532 234567999999988776 69
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCccc------CCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG------LPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g------~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
++|++.+... ... .+.++++++.+++.+..+.... ......||||||||++||++|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 111 1235677888888776654321 112458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G 1052 (1419)
||||+|||+.++..+.+.|++++++ +|||+++|+++ ..+.+|++++|.+ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998764 89999999976 3478999999986 7887654
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=315.68 Aligned_cols=205 Identities=21% Similarity=0.256 Sum_probs=163.5
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC--c-eEEEEEEECCccCC-----cccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--G-IIEGDIYISGYPKR-----QETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--~-~~~G~i~i~g~~~~-----~~~~~~~~gyv~Q~d~~ 913 (1419)
..+|+|+|++|++||++||+|+||||||||+++|+|.... . +.+|+|.++|.++. ...+++.++|++|++.+
T Consensus 23 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 102 (264)
T PRK14243 23 FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNP 102 (264)
T ss_pred EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCcc
Confidence 4699999999999999999999999999999999997431 1 25799999998753 12345679999999887
Q ss_pred CCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceee
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLD 993 (1419)
++ .|++||+.+....+. .. ...++.++++++.+++.+..+... ...+..||||||||++|||+|+.+|++|+||
T Consensus 103 ~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLD 176 (264)
T PRK14243 103 FP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMD 176 (264)
T ss_pred cc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 77 499999988654321 11 122345667778777743111111 1124579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEec--------CCEEEEeCCC
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR--------GGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~--------gG~~~~~G~~ 1054 (1419)
|||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|++ .|+++..|+.
T Consensus 177 EPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 177 EPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELTEGGGRYGYLVEFDRT 243 (264)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccccccccCceEEEeCCH
Confidence 99999999999999999999975 589999999986 57889999999972 4799999875
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-32 Score=312.75 Aligned_cols=206 Identities=25% Similarity=0.336 Sum_probs=167.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCcc-----CCCCCC-------CceEEEEcc
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG-----FKEFVP-------PRTSAYVSQ 216 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~Q 216 (1419)
++|+|+|+++++|++++|+||||||||||+++|+|.++|. +|+|.++|.+ +..... ++.++|++|
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q 96 (258)
T PRK11701 20 KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEee
Confidence 5999999999999999999999999999999999998775 9999999987 544321 346999999
Q ss_pred CCC--CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcc-
Q 000562 217 QDW--QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT- 293 (1419)
Q Consensus 217 ~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~- 293 (1419)
++. +.+.+|+.||+.+........ .. + +....++++++.+|+..
T Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~------------------~--------------~~~~~~~~~l~~~~l~~~ 143 (258)
T PRK11701 97 HPRDGLRMQVSAGGNIGERLMAVGAR-HY------------------G--------------DIRATAGDWLERVEIDAA 143 (258)
T ss_pred CcccccCccccHHHHHHHHHHHhccC-cH------------------H--------------HHHHHHHHHHHHcCCChh
Confidence 973 567789999997632211000 00 0 01223567888999964
Q ss_pred cccccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHh
Q 000562 294 CADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1419)
Q Consensus 294 ~~dt~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~ 373 (1419)
..++.+ ..|||||||||+|||||+.+|++++|||||+|||+.+...+.+.|+++.+. .+.+|+.++|+..++.+
T Consensus 144 ~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~~tii~isH~~~~~~~ 217 (258)
T PRK11701 144 RIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE-LGLAVVIVTHDLAVARL 217 (258)
T ss_pred HHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHh-cCcEEEEEeCCHHHHHH
Confidence 445444 469999999999999999999999999999999999999999999988653 25677779999999999
Q ss_pred hcCeEEEEcCCeEEEEcChhhHH
Q 000562 374 LFDDVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 374 ~~D~vilL~~G~iv~~G~~~~~~ 396 (1419)
.+|+|++|++|++++.|+++++.
T Consensus 218 ~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 218 LAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred hcCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999987763
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=355.48 Aligned_cols=211 Identities=27% Similarity=0.435 Sum_probs=174.7
Q ss_pred ceeEeccceeeeecccccccccccccceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCcc
Q 000562 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1419)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~ 894 (1419)
..+.|+|+++..+. ++++|+|+|++++|||++||+||||||||||+++|.|... +.+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~--~~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD--PTSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC--CCCCeEEECCEe
Confidence 45788888877642 4679999999999999999999999999999999999876 468999999988
Q ss_pred CCc---ccccceEEEEccCCCCCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCC-------ccccCCcccCC
Q 000562 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-------TSLSGALIGLP 964 (1419)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l-------~~~~~~~~g~~ 964 (1419)
+++ ..+++.++||+|++.++. -|++||+.++. .+.+++ .++++++..++ .+-.|+.+|..
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge~ 462 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDE----EIEEALKLANAHEFIANLPDGYDTIVGER 462 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhChHHHHHhCcccccceecCC
Confidence 654 567889999999998887 79999999862 112222 23444443332 23467888844
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEec
Q 000562 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1419)
Q Consensus 965 ~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~ 1044 (1419)
...||||||||++||||++++|+||+||||||+||+.+...|++.++++. +++|+++++|+++ ....+|+|++|++
T Consensus 463 -G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 463 -GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred -CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999877 5789999999986 4566999999986
Q ss_pred CCEEEEeCCC
Q 000562 1045 GGELIYAGPL 1054 (1419)
Q Consensus 1045 gG~~~~~G~~ 1054 (1419)
|+++..|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 789999985
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=312.46 Aligned_cols=208 Identities=24% Similarity=0.307 Sum_probs=162.7
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcc---c-ccceEEEEccCCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~d~~~~~ 916 (1419)
++.+|+|+|++|++||+++|+|+||||||||+++|+|.....+.+|+|.++|.+.... . .++.++|++|++.+++.
T Consensus 13 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 13 DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 3569999999999999999999999999999999999842114689999999875321 1 23468999999888888
Q ss_pred ccHHHHHHHHhh-hcC--CCC-CcHHHHHHHHHHHHHHcCCc-cccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 917 LTVLESLLFSAW-LRL--PSE-IELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 917 lTv~E~l~f~a~-lr~--~~~-~~~~~~~~~v~~vl~~l~l~-~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
+|+.+++.+... ++. ... .......+.+++.++.+++. +..+..+ .+.||||||||++|||+|+.+|+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~ill 168 (248)
T PRK09580 93 VSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCI 168 (248)
T ss_pred hhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 887776653211 110 000 11122345678888988884 3444332 13699999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHh-cCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~-~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|+++++.|+|||+++|+++. +... +|++++|++ |++++.|+.
T Consensus 169 LDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 230 (248)
T PRK09580 169 LDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDF 230 (248)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHhhhCCEEEEEEC-CeEEEeCCH
Confidence 999999999999999999999998778999999999763 4444 799999985 799999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=303.80 Aligned_cols=185 Identities=25% Similarity=0.296 Sum_probs=155.1
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc--ccccceEEEEccCCCCCCCc
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGL 917 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~d~~~~~l 917 (1419)
+++.+|+|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++.+++.+
T Consensus 11 ~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 88 (198)
T TIGR01189 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88 (198)
T ss_pred CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCC
Confidence 34579999999999999999999999999999999999865 468999999987532 23456789999998888889
Q ss_pred cHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCC
Q 000562 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1419)
Q Consensus 918 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTs 997 (1419)
|+.|++.+....+.. + ++.++++++.+++.+..+..+ ..||||||||++||++++.+|++++|||||+
T Consensus 89 tv~~~l~~~~~~~~~-----~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~ 156 (198)
T TIGR01189 89 SALENLHFWAAIHGG-----A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTT 156 (198)
T ss_pred cHHHHHHHHHHHcCC-----c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 999999876543311 1 234678999999987766654 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEE
Q 000562 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1419)
Q Consensus 998 gLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~ 1041 (1419)
|||+.+...+++.|++++++|.|||+++|++.. + .+++++.
T Consensus 157 ~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~-~--~~~~~~~ 197 (198)
T TIGR01189 157 ALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG-L--VEARELR 197 (198)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc-c--cceEEee
Confidence 999999999999999998789999999999752 2 3466543
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=304.82 Aligned_cols=192 Identities=27% Similarity=0.411 Sum_probs=161.1
Q ss_pred cceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCC-------CCceEEEEccCCCCCCCCC
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------PPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 225 (1419)
|+|+++++ |+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++++|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999775 999999998764211 2457999999998888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
++||+.+..... . . . .....++.+++.+||++..++.+ +
T Consensus 92 ~~~~l~~~~~~~---~--~------~-------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 130 (214)
T cd03297 92 VRENLAFGLKRK---R--N------R-------------------------EDRISVDELLDLLGLDHLLNRYP-----A 130 (214)
T ss_pred HHHHHHHHHhhC---C--H------H-------------------------HHHHHHHHHHHHcCCHhHhhcCc-----c
Confidence 999998753210 0 0 0 00123567888999987666544 4
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
.||||||||++||+|++.+|++++|||||+|||+.++..+.+.+++++... +++|+.++|+..++.+++|++++|++|+
T Consensus 131 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tiii~sH~~~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 131 QLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL-NIPVIFVTHDLSEAEYLADRIVVMEDGR 209 (214)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHc-CcEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 699999999999999999999999999999999999999999999987532 4567778899999999999999999999
Q ss_pred EEEEc
Q 000562 386 IVYQG 390 (1419)
Q Consensus 386 iv~~G 390 (1419)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98775
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=310.45 Aligned_cols=194 Identities=21% Similarity=0.287 Sum_probs=164.2
Q ss_pred cceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccH
Q 000562 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 840 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
..+.+|+|+|++++|||++||+||||||||||+++|+|..+ +.+|+|.++|. ++++.|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~--p~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS--PTVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCE----------EeEEecccCCCCCCcH
Confidence 45679999999999999999999999999999999999876 46899999985 3567777767778999
Q ss_pred HHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCC
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgL 999 (1419)
+|++.+...... ...++..+.++++++.+++.+..+.. ++.||+|||||++||++|+.+|+||+|||||+||
T Consensus 103 ~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 999987644321 22333445567888888888766654 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1000 D~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
|+.+...+.+.|+++++.|+|||+++|++. ++.+.+|++++|.+ |+++..|+..
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~-G~i~~~g~~~ 228 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEG-GKLKDYGELD 228 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999877999999999975 46678999999985 7999988853
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=311.36 Aligned_cols=210 Identities=24% Similarity=0.353 Sum_probs=167.0
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+++++||+++|+|||||||||||++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 17 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14262 17 KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPF 96 (250)
T ss_pred eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCccC
Confidence 5899999999999999999999999999999999998641 13589999999887532 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.++....+... + + ..+..+++.++.+|+....+.. .+
T Consensus 97 ~-~tv~e~l~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~~~~~-~~ 141 (250)
T PRK14262 97 P-MSIYDNVAFGPRIHGVKS--K---H----------------------------KLDRIVEESLKKAALWDEVKSE-LN 141 (250)
T ss_pred c-ccHHHHHHHHHHHcCCCc--H---H----------------------------HHHHHHHHHHHHcCCCchhHHH-Hh
Confidence 6 899999987643221100 0 0 0112345667777775321111 13
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.||||||||++||+|++.+|++++|||||+|||..++..+.+.|+++++ + ++++.++|+..++.+++|++++|
T Consensus 142 ~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tili~sH~~~~~~~~~d~i~~l 218 (250)
T PRK14262 142 KPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--N-YTIVIVTHNIGQAIRIADYIAFM 218 (250)
T ss_pred CChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--C-cEEEEEeCCHHHHHHhCCEEEEE
Confidence 44567999999999999999999999999999999999999999999998853 3 56777889988999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 219 YRGELIEYGPTREIV 233 (250)
T ss_pred ECCEEEEecCHHHHH
Confidence 999999999988764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.21 Aligned_cols=208 Identities=24% Similarity=0.302 Sum_probs=165.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC--CeeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+.|++|++++|+||||||||||+++|+|.+.|.. ..+|+|.++|.++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 369999999999999999999999999999999999986531 1489999999887531 124579999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc----cccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCAD 296 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~d 296 (1419)
++.+|+.||+.++....+... .+ +....++..++.+++. +..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-~~--------------------------------~~~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-RD--------------------------------HLMEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-HH--------------------------------HHHHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987543211100 00 0011233445555543 2334
Q ss_pred ccccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcC
Q 000562 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1419)
Q Consensus 297 t~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D 376 (1419)
+. ++.||||||||++||++|+.+|++++|||||+|||..++..+.+.|+++++ + ++++.++|+..++.+.+|
T Consensus 144 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tiii~sH~~~~~~~~~d 215 (252)
T PRK14272 144 TP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--V-TTIIIVTHNMHQAARVSD 215 (252)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEeCCHHHHHHhCC
Confidence 43 456999999999999999999999999999999999999999999998853 3 667778899999999999
Q ss_pred eEEEEcCCeEEEEcChhhHH
Q 000562 377 DVILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 377 ~vilL~~G~iv~~G~~~~~~ 396 (1419)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-32 Score=308.33 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=163.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1419)
+++|+|+|+++++||+++|+|||||||||||++|+|..+ +..+.+|+|.++|.++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 359999999999999999999999999999999999864 3222489999999877431 124679999999887
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
++ .||+||+.+.....+... .+ . ....+...++.+|+........
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~-~~----~----------------------------~~~~~~~~l~~~~l~~~i~~~~- 142 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKD-KA----V----------------------------LDEAVETSLKQAAIWDEVKDHL- 142 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCC-HH----H----------------------------HHHHHHHHHHHcCCccchhhHH-
Confidence 77 799999987643321110 00 0 0112344555666532111111
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
+..+..|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++.. + ++++.++|+..++.+.+|+|++
T Consensus 143 ~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~vsH~~~~~~~~~d~i~~ 219 (252)
T PRK14255 143 HESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--Q-YTIILVTHSMHQASRISDKTAF 219 (252)
T ss_pred hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--C-CEEEEEECCHHHHHHhCCEEEE
Confidence 233456999999999999999999999999999999999999999999998854 3 5677788999999999999999
Q ss_pred EcCCeEEEEcChhhH
Q 000562 381 LSEGQIVYQGPRVSV 395 (1419)
Q Consensus 381 L~~G~iv~~G~~~~~ 395 (1419)
|++|+++..|+..++
T Consensus 220 l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 220 FLTGNLIEFADTKQM 234 (252)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999988776
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=312.60 Aligned_cols=207 Identities=25% Similarity=0.314 Sum_probs=166.4
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECCccCCc-----ccccceEEEEccCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDI 912 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~ 912 (1419)
++.+|+|+|+++++||+++|+|+||||||||+++|+|.... .+.+|+|.+||.++.. ...++.++|++|++.
T Consensus 15 ~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 15 DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 35699999999999999999999999999999999996431 1258999999987532 234567999999988
Q ss_pred CCCCccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 913 ~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
+++. |++||+.+...... ....+...+.+.+.++.+++.+....... .....||+|||||++||++|+.+|++++|
T Consensus 95 ~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~LS~Gq~qrv~laral~~~p~llll 170 (250)
T PRK14266 95 PFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSALGLSGGQQQRLCIARTIAVSPEVILM 170 (250)
T ss_pred cCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8875 99999987643221 11223334567888888888542111111 22457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
||||+|||+.+...+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 171 DEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i~~~g~~ 229 (250)
T PRK14266 171 DEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEIIESGLT 229 (250)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeEEEeCCH
Confidence 999999999999999999999864 899999999986 57788999999985 799999875
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=310.67 Aligned_cols=200 Identities=27% Similarity=0.400 Sum_probs=167.3
Q ss_pred eeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCCH
Q 000562 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTV 226 (1419)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 226 (1419)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999873 2 8999999998765432 2468999999888888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCCC
Q 000562 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1419)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1419)
+||+.+..... . .. .+....++++++.+||.+..++.+ +.
T Consensus 87 ~~nl~~~~~~~-~-~~---------------------------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 126 (248)
T PRK03695 87 FQYLTLHQPDK-T-RT---------------------------------EAVASALNEVAEALGLDDKLGRSV-----NQ 126 (248)
T ss_pred HHHHHhcCccC-C-Cc---------------------------------HHHHHHHHHHHHHcCCHhHhcCCc-----cc
Confidence 99998753210 0 00 001224677889999987666655 46
Q ss_pred CChHHhHHHHHHHHHhC-------CCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEE
Q 000562 307 ISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 307 LSGGqkkRvsia~al~~-------~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vi 379 (1419)
||||||||++||+||+. +|++++|||||+|||+.++..+.+.|+++++. +++|+.++|+..++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~--~~tvi~~sH~~~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ--GIAVVMSSHDLNHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEecCHHHHHHhCCEEE
Confidence 99999999999999997 67999999999999999999999999998642 5667778899999999999999
Q ss_pred EEcCCeEEEEcChhhH
Q 000562 380 LLSEGQIVYQGPRVSV 395 (1419)
Q Consensus 380 lL~~G~iv~~G~~~~~ 395 (1419)
+|++|++++.|+.+++
T Consensus 205 ~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 205 LLKQGKLLASGRRDEV 220 (248)
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999987765
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=311.14 Aligned_cols=210 Identities=23% Similarity=0.307 Sum_probs=166.2
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|+++++||+++|+||||||||||+++|+|..++. .+.+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 5999999999999999999999999999999999987532 12489999999987543 1245799999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.|+.+..+.... ......++.+++.++|.+...+.. +
T Consensus 100 ~-~tv~eni~~~~~~~~~~~~---------------------------------~~~~~~~~~~l~~~~l~~~l~~~~-~ 144 (253)
T PRK14261 100 P-KSIYENVAYGPRIHGEKNK---------------------------------KTLDTIVEKSLKGAALWDEVKDRL-H 144 (253)
T ss_pred c-ccHHHHHHhhHHhcCCCCH---------------------------------HHHHHHHHHHHHHhcCchhhHHHh-h
Confidence 7 4999999986543211000 001123455677777743211111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.||||||||++|||+++.+|++++|||||+|||..++..+.+.|+++++ + .+|+.++|+..++.+.+|++++|
T Consensus 145 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~-~tvii~sh~~~~~~~~~d~v~~l 221 (253)
T PRK14261 145 DSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--E-YTVIIVTHNMQQAARVSDYTGFM 221 (253)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--C-ceEEEEEcCHHHHHhhCCEEEEE
Confidence 34557999999999999999999999999999999999999999999998864 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 222 YLGKLIEFDKTTQIF 236 (253)
T ss_pred ECCEEEEcCCHHHHH
Confidence 999999999987763
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=313.39 Aligned_cols=212 Identities=26% Similarity=0.366 Sum_probs=169.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC-----CeeeEEEECCccCCCCCC---CceEEEEccCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL-----QVSGKITYNGHGFKEFVP---PRTSAYVSQQDW 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~-----~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 219 (1419)
+.+|+|+|++|++||+++|+|||||||||||++|+|.+++.. ..+|+|.++|.++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 359999999999999999999999999999999999987631 128999999998754332 346899999987
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1419)
.++.+||+||+.++...... ... ... .+....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~~~-------------~~~---------------~~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--RAG-------------ALT---------------HRDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--ccc-------------cCC---------------HHHHHHHHHHHHHcCcHhhhcCCc
Confidence 66779999999875321000 000 000 001223677889999987655544
Q ss_pred cCccCCCCChHHhHHHHHHHHHh---------CCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhH
Q 000562 300 GDEMLKGISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1419)
Q Consensus 300 g~~~~~~LSGGqkkRvsia~al~---------~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~ 370 (1419)
..|||||||||+|||+|+ .+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..+
T Consensus 144 -----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-~~tviiisH~~~~ 217 (272)
T PRK13547 144 -----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW-NLGVLAIVHDPNL 217 (272)
T ss_pred -----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc-CCEEEEEECCHHH
Confidence 469999999999999999 5999999999999999999999999999986532 4567778899999
Q ss_pred HHhhcCeEEEEcCCeEEEEcChhhH
Q 000562 371 AYELFDDVILLSEGQIVYQGPRVSV 395 (1419)
Q Consensus 371 ~~~~~D~vilL~~G~iv~~G~~~~~ 395 (1419)
+.+++|++++|++|++++.|+.+++
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHH
Confidence 9999999999999999999998776
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=310.18 Aligned_cols=206 Identities=25% Similarity=0.349 Sum_probs=158.4
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPT---SGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G 91 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCC---CCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-h
Confidence 46999999999999999999999999999999999998775 9999999987654322 356999999987665 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHh--CCcccccccccCc
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1419)
||+||+.+...... .+ +.... .+. ......++.+ |++...+ .
T Consensus 92 tv~e~l~~~~~~~~----~~---~~~~~---------------~~~---------~~~~~~~~~l~~~~~~~~~-----~ 135 (238)
T cd03249 92 TIAENIRYGKPDAT----DE---EVEEA---------------AKK---------ANIHDFIMSLPDGYDTLVG-----E 135 (238)
T ss_pred hHHHHhhccCCCCC----HH---HHHHH---------------HHH---------cChHHHHHhhccccceeec-----c
Confidence 99999987532110 00 00000 000 0012222333 3433333 3
Q ss_pred cCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEc
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~ 382 (1419)
..+.|||||||||+||++|+.+|++++|||||+|||+.++.++.+.|+++. . +++|+.++|+.+++. .+|++++|+
T Consensus 136 ~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~-g~~vi~~sh~~~~~~-~~d~v~~l~ 211 (238)
T cd03249 136 RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--K-GRTTIVIAHRLSTIR-NADLIAVLQ 211 (238)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHHh-hCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999874 2 455666788888885 899999999
Q ss_pred CCeEEEEcChhhHHH
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1419)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999998877654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=312.10 Aligned_cols=209 Identities=21% Similarity=0.259 Sum_probs=168.5
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 220 (1419)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. .+.+|+|+++|+++... ..++.++|++|++.+
T Consensus 21 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 100 (261)
T PRK14263 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNP 100 (261)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCcc
Confidence 46999999999999999999999999999999999998752 12589999999987432 124679999999886
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccccc
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1419)
+ .+|+.||+.++....+.. . +....++.+++.+||.+..+...+
T Consensus 101 ~-~~tv~enl~~~~~~~~~~---~--------------------------------~~~~~~~~~l~~~~l~~~i~~~~~ 144 (261)
T PRK14263 101 F-SMSIFDNVAFGLRLNRYK---G--------------------------------DLGDRVKHALQGAALWDEVKDKLK 144 (261)
T ss_pred c-cccHHHHHHHHHhhcCch---H--------------------------------HHHHHHHHHHHHcCCchhhhhhhh
Confidence 6 699999998864322100 0 001235667788887543322222
Q ss_pred CccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEE
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vil 380 (1419)
...+.||||||||++|||||+.+|++++|||||+|||+.++.++.+.|+++.+ +++++.++|+..++.+++|+|++
T Consensus 145 -~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~---~~tii~isH~~~~i~~~~d~v~~ 220 (261)
T PRK14263 145 -VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK---DYTIALVTHNMQQAIRVADTTAF 220 (261)
T ss_pred -CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc---CCeEEEEeCCHHHHHHhCCEEEE
Confidence 34567999999999999999999999999999999999999999999998852 35677788999999999999999
Q ss_pred Ec--------CCeEEEEcChhhHH
Q 000562 381 LS--------EGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~--------~G~iv~~G~~~~~~ 396 (1419)
|+ +|++++.|+.+++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 95 89999999988764
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=351.38 Aligned_cols=208 Identities=24% Similarity=0.359 Sum_probs=164.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
.++|+|+|+.+++||.++|+|+||||||||+++|+|.++|. +|+|.+||.++++... ++.++||+|++.+| +.
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf-~~ 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLF-ND 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCcccc-cc
Confidence 36999999999999999999999999999999999999886 8999999999876653 46799999999855 56
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccC
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1419)
|++|||.++..- ....+.+.++ ++.+. .++.++ .|++..||.||+. .
T Consensus 421 Ti~~Ni~~~~~~---~~~~~~i~~~------------------l~~~~---------l~~~i~--~lp~gldt~i~~~-g 467 (571)
T TIGR02203 421 TIANNIAYGRTE---QADRAEIERA------------------LAAAY---------AQDFVD--KLPLGLDTPIGEN-G 467 (571)
T ss_pred cHHHHHhcCCCC---CCCHHHHHHH------------------HHHcC---------hHHHHH--hCcCcccceecCC-C
Confidence 999999875310 0000111111 11000 111111 3566789999976 5
Q ss_pred CCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCC
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 ~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G 384 (1419)
++||||||||++||||++.+|++++||||||+||..++..|.+.|++..+ ++| ++.++|+. ...+.||+|++|++|
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~t-iIiitH~~-~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRT-TLVIAHRL-STIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCE-EEEEehhh-HHHHhCCEEEEEeCC
Confidence 68999999999999999999999999999999999999999999998743 344 44466665 557889999999999
Q ss_pred eEEEEcChhhHH
Q 000562 385 QIVYQGPRVSVL 396 (1419)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1419)
+++..|+.+++.
T Consensus 544 ~i~~~g~~~~l~ 555 (571)
T TIGR02203 544 RIVERGTHNELL 555 (571)
T ss_pred EEEeeCCHHHHH
Confidence 999999999875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-33 Score=298.83 Aligned_cols=160 Identities=30% Similarity=0.447 Sum_probs=142.9
Q ss_pred ceeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc-----ccccceEEEEccCCCCCC
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIHSP 915 (1419)
Q Consensus 841 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~~~ 915 (1419)
++.+++|+|+++++||+++|+||||||||||+++|+|..+ +.+|+|.++|.+... ..+++.++|++|++..++
T Consensus 12 ~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (178)
T cd03229 12 QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFP 89 (178)
T ss_pred CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCC
Confidence 3569999999999999999999999999999999999866 468999999987532 234578999999998888
Q ss_pred CccHHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCC
Q 000562 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1419)
Q Consensus 916 ~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEP 995 (1419)
.+|++|++.+. ||||||||++||++|+.+|++++||||
T Consensus 90 ~~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP 127 (178)
T cd03229 90 HLTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEP 127 (178)
T ss_pred CCCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 89999988531 899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhc-CCEEEEEecCCCHHHHHhcCeEEEEecC
Q 000562 996 TSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 996 TsgLD~~~~~~i~~~l~~l~~~-g~tvi~~~H~~~~~~~~~~D~v~~l~~g 1045 (1419)
|+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++|
T Consensus 128 ~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g 177 (178)
T cd03229 128 TSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDG 177 (178)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCC
Confidence 9999999999999999999877 899999999975 466689999999863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-33 Score=316.25 Aligned_cols=196 Identities=21% Similarity=0.302 Sum_probs=162.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCcc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
..+|+|||++|++||+++|+|+||||||||+++|+|... .+|+|.++|.++.. ...++.++||+|++.+++. |
T Consensus 17 ~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-t 92 (275)
T cd03289 17 NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-T 92 (275)
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchh-h
Confidence 458999999999999999999999999999999999875 37999999987642 3456789999999998874 9
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccC------CCCCCCCHHHHHHHHHHHHHhhCCCccee
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~------~~~~~lSgGqrqrl~iA~~L~~~p~illL 992 (1419)
++||+.... + .. ++.+++.++.++|.+..+...+. ++...||+|||||++|||+|+.+|+||+|
T Consensus 93 v~~nl~~~~----~--~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illl 162 (275)
T cd03289 93 FRKNLDPYG----K--WS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLL 162 (275)
T ss_pred HHHHhhhcc----C--CC----HHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999995321 0 11 23467788889987665544321 12356999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 993 DEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
||||+|||+.+...+++.|+++. .++|||+++|+++ ....+|++++|++ |++++.|++.
T Consensus 163 DEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~~-G~i~~~g~~~ 221 (275)
T cd03289 163 DEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIEE-NKVRQYDSIQ 221 (275)
T ss_pred ECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEecC-CeEeecCCHH
Confidence 99999999999999999999875 4899999999975 3456999999985 7999999863
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=327.02 Aligned_cols=192 Identities=20% Similarity=0.308 Sum_probs=161.3
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCCCCccHHH
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
+.+|+|+|+++++|+++||+|||||||||||++|+|..+ +.+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~--P~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM--PNKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC--CCceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 469999999999999999999999999999999999876 4689999999641 1222344567789999
Q ss_pred HHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCH
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~ 1001 (1419)
++.+....+. ...++..+.++++++.+++.+..+..+ +.||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 9987554321 223334456788999999987776653 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1002 ~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+..
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~ 228 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999878999999999986 56778999999985 7999999864
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=296.24 Aligned_cols=170 Identities=39% Similarity=0.660 Sum_probs=147.7
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCc--CCCCCeeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1419)
.++|+|+|+++++|++++|+||||||||||+++|+|.+ ++. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999998 665 9999999998765334577999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
++||+.+..++ .
T Consensus 99 ~~~~i~~~~~~--------------------------------------------------------------------~ 110 (194)
T cd03213 99 VRETLMFAAKL--------------------------------------------------------------------R 110 (194)
T ss_pred HHHHHHHHHHh--------------------------------------------------------------------c
Confidence 99999753110 0
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChh-HHHhhcCeEEEEcCC
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP-EAYELFDDVILLSEG 384 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~-~~~~~~D~vilL~~G 384 (1419)
.||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++... +++++.++|+.+ ++.+.+|++++|++|
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~--~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT--GRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 49999999999999999999999999999999999999999999988653 445555666664 788999999999999
Q ss_pred eEEEEc
Q 000562 385 QIVYQG 390 (1419)
Q Consensus 385 ~iv~~G 390 (1419)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-32 Score=310.28 Aligned_cols=210 Identities=23% Similarity=0.322 Sum_probs=165.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcC--CCCCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+.|++||+++|+||||||||||+++|+|.++ |..+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (251)
T PRK14251 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPF 97 (251)
T ss_pred eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCccC
Confidence 59999999999999999999999999999999999986 2213589999999886431 1245799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.++....+.... + .....++.+++.+||........ +
T Consensus 98 ~-~tv~enl~~~~~~~~~~~~-----~----------------------------~~~~~~~~~l~~~~l~~~~~~~~-~ 142 (251)
T PRK14251 98 P-FSVYDNVAYGLKIAGVKDK-----E----------------------------LIDQRVEESLKQAAIWKETKDNL-D 142 (251)
T ss_pred C-CcHHHHHHHHHHHcCCCCH-----H----------------------------HHHHHHHHHHHHcCCCcchHHHh-c
Confidence 5 7999999875432211000 0 00123456777788842110001 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
...+.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +++|+.++|+..++.+++|+|++|
T Consensus 143 ~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~---~~tiiiisH~~~~~~~~~d~i~~l 219 (251)
T PRK14251 143 RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH---QYTFIMVTHNLQQAGRISDQTAFL 219 (251)
T ss_pred cChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc---CCeEEEEECCHHHHHhhcCEEEEE
Confidence 34457999999999999999999999999999999999999999999998853 356777889999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|+++..|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 220 MNGDLIEAGPTEEMF 234 (251)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999987763
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=308.93 Aligned_cols=210 Identities=20% Similarity=0.256 Sum_probs=166.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
.+|+|+|++|++|++++|+||||||||||+++|+|.+++. .+.+|+|.++|.++... ..++.++|++|++.++
T Consensus 18 ~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (251)
T PRK14249 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPF 97 (251)
T ss_pred eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCccC
Confidence 5999999999999999999999999999999999998764 12369999999876432 1246799999999878
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+. ||+||+.++....+... + + +....++.+++.+||.+...... +
T Consensus 98 ~~-tv~enl~~~~~~~~~~~--~---~----------------------------~~~~~~~~~l~~~~l~~~l~~~~-~ 142 (251)
T PRK14249 98 PK-SIFDNVAFGPRMLGTTA--Q---S----------------------------RLDEVVEKSLRQAALWDEVKDNL-H 142 (251)
T ss_pred cC-cHHHHHhhHHHhcCCCh--h---h----------------------------HHHHHHHHHHHHhCCchhhhhHh-h
Confidence 75 99999988654321100 0 0 00112345566666643211111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.....|||||||||+|||||+.+|++++|||||+|||+.++.++.+.|+++. . +.+|+.++|+..++.+++|++++|
T Consensus 143 ~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~--~~tilivsh~~~~~~~~~d~i~~l 219 (251)
T PRK14249 143 KSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-Q--NYTIAIVTHNMQQAARASDWTGFL 219 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-c--CCEEEEEeCCHHHHHhhCCEEEEE
Confidence 3455799999999999999999999999999999999999999999999874 2 466777899999999999999999
Q ss_pred cCCeEEEEcChhhHH
Q 000562 382 SEGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1419)
++|++++.|+.+++.
T Consensus 220 ~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 220 LTGDLVEYGRTGEIF 234 (251)
T ss_pred eCCeEEEeCCHHHHH
Confidence 999999999988763
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=306.22 Aligned_cols=194 Identities=25% Similarity=0.357 Sum_probs=159.4
Q ss_pred eEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCcccccceEEEEccCCCCC--CCccHHHHHHHHh
Q 000562 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSA 927 (1419)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~--~~lTv~E~l~f~a 927 (1419)
+++++||++||+|+||||||||+++|+|..+ +.+|+|.+||.+... .++.++|++|++.+. ..+|+.|++.+..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~ 76 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP--PAKGTVKVAGASPGK--GWRHIGYVPQRHEFAWDFPISVAHTVMSGR 76 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCccchH--hhCcEEEecccccccCCCCccHHHHHHhcc
Confidence 4688999999999999999999999999866 468999999987532 356799999998654 3489999998753
Q ss_pred hhcC-CCCCcHHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHHhhCCCcceeeCCCCCCCHHHHHH
Q 000562 928 WLRL-PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1419)
Q Consensus 928 ~lr~-~~~~~~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L~~~p~illLDEPTsgLD~~~~~~ 1006 (1419)
.... .........++.++++++.+++.+..+..+ ..||+|||||++||++|+.+|++++|||||+|||+.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~ 151 (223)
T TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQEL 151 (223)
T ss_pred ccccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 2110 000111223456788999999987766654 4799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCCC
Q 000562 1007 VMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1007 i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~~ 1055 (1419)
+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|+..
T Consensus 152 l~~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~-G~i~~~~~~~ 197 (223)
T TIGR03771 152 LTELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-N-GRVIADGTPQ 197 (223)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeecCHH
Confidence 99999999877999999999976 577889999999 5 7999999864
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=318.62 Aligned_cols=208 Identities=24% Similarity=0.320 Sum_probs=164.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCC---ceEEEEEEECCccCCc-----ccccceEEEEccCCCC
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG---GIIEGDIYISGYPKRQ-----ETFARISGYCEQNDIH 913 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---~~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~d~~ 913 (1419)
+.+|+++|++|++||+++|+|+|||||||||++|+|.... .+.+|+|.++|.++.. ...++.++|++|++.+
T Consensus 58 ~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l 137 (305)
T PRK14264 58 DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNP 137 (305)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCcc
Confidence 5699999999999999999999999999999999997531 1458999999987532 2345679999999887
Q ss_pred CCCccHHHHHHHHhhhcCCC---------CCc-HHHHHHHHHHHHHHcCCccccCCcccCCCCCCCCHHHHHHHHHHHHH
Q 000562 914 SPGLTVLESLLFSAWLRLPS---------EIE-LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1419)
Q Consensus 914 ~~~lTv~E~l~f~a~lr~~~---------~~~-~~~~~~~v~~vl~~l~l~~~~~~~~g~~~~~~lSgGqrqrl~iA~~L 983 (1419)
++ .||+||+.+....+... ... ....++.++++++.+++.+....... ..+..||||||||++||++|
T Consensus 138 ~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~~LSgGq~qrv~LAraL 215 (305)
T PRK14264 138 FP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLD-DNALGLSGGQQQRLCIARCL 215 (305)
T ss_pred cc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhc-CccccCCHHHHHHHHHHHHH
Confidence 77 59999999865322100 011 12234567888898887432211111 12468999999999999999
Q ss_pred hhCCCcceeeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEE-EEecCCEEEEeCCC
Q 000562 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL-FMKRGGELIYAGPL 1054 (1419)
Q Consensus 984 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~-~l~~gG~~~~~G~~ 1054 (1419)
+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+++ .+.+.+|+++ +|+ .|+++..|+.
T Consensus 216 ~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 216 AVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISDQTAVFLT-GGELVEYDDT 284 (305)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcCEEEEEec-CCEEEEeCCH
Confidence 999999999999999999999999999999876 589999999986 4677899975 566 4899999985
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=311.51 Aligned_cols=206 Identities=22% Similarity=0.279 Sum_probs=165.7
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCC--eeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQ--VSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~--~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+++++||+++|+|+|||||||||++|+|.+++..+ .+|+|.++|+++... ..++.++|++|++.++
T Consensus 21 ~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 100 (259)
T PRK14260 21 KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPF 100 (259)
T ss_pred EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccccC
Confidence 599999999999999999999999999999999999875322 489999999887431 1235799999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc----ccccc
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD----TCADT 297 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~----~~~dt 297 (1419)
+ +||+||+.++....+... +. +....++.+++.+|+. +..+
T Consensus 101 ~-~tv~enl~~~~~~~~~~~-------------------~~--------------~~~~~~~~~l~~~~l~~~l~~~~~- 145 (259)
T PRK14260 101 P-MSIYENVAYGVRISAKLP-------------------QA--------------DLDEIVESALKGAALWQEVKDKLN- 145 (259)
T ss_pred C-ccHHHHHHHHHHHhcCCC-------------------HH--------------HHHHHHHHHHHHcCCcchhhhHhc-
Confidence 7 899999987643221000 00 0112345567777773 2233
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.....|||||||||+|||||+.+|++++|||||+|||+.+..++.+.|++++. + .+|+.++|+.+++.+++|+
T Consensus 146 ----~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~-~tiii~tH~~~~i~~~~d~ 218 (259)
T PRK14260 146 ----KSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--E-LTIAIVTHNMQQATRVSDF 218 (259)
T ss_pred ----CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--C-CEEEEEeCCHHHHHHhcCe
Confidence 34457999999999999999999999999999999999999999999998853 3 5677788999999999999
Q ss_pred EEEEc-----CCeEEEEcChhhHH
Q 000562 378 VILLS-----EGQIVYQGPRVSVL 396 (1419)
Q Consensus 378 vilL~-----~G~iv~~G~~~~~~ 396 (1419)
+++|+ +|+++++|+++++.
T Consensus 219 i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 219 TAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEEEeccCCCCceEEEeCCHHHHh
Confidence 99998 59999999988763
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=356.98 Aligned_cols=207 Identities=25% Similarity=0.411 Sum_probs=165.8
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1419)
++|+|+|++++||+.++|+|+||||||||+++|+|.++|+ +|+|++||+++++... ++.++||+|++.+++ .|
T Consensus 471 ~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~t 546 (694)
T TIGR01846 471 EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RS 546 (694)
T ss_pred cccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehh-hh
Confidence 5999999999999999999999999999999999999876 9999999999887654 477999999998665 69
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccCccCC
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1419)
++|||.++.. ....+.+.++++. . ..++.++ .|++..||.+|+. ..
T Consensus 547 i~eNi~~~~~----~~~~~~i~~a~~~------------------~---------~l~~~i~--~lp~gl~t~i~~~-g~ 592 (694)
T TIGR01846 547 IRDNIALCNP----GAPFEHVIHAAKL------------------A---------GAHDFIS--ELPQGYNTEVGEK-GA 592 (694)
T ss_pred HHHHHhcCCC----CCCHHHHHHHHHH------------------c---------ChHHHHH--hCcCccCcEecCC-CC
Confidence 9999987421 1111111111110 0 0112222 3567789999875 56
Q ss_pred CCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEEcCCe
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 ~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL~~G~ 385 (1419)
+||||||||++||||++.+|++++||||||+||+.++..+.+.|++..+ + .|++.++|..+.+ ..+|+|++|++|+
T Consensus 593 ~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~--~-~t~i~itH~~~~~-~~~d~ii~l~~G~ 668 (694)
T TIGR01846 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR--G-RTVIIIAHRLSTV-RACDRIIVLEKGQ 668 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhC--C-CEEEEEeCChHHH-HhCCEEEEEeCCE
Confidence 8999999999999999999999999999999999999999999998742 3 4555566766555 5699999999999
Q ss_pred EEEEcChhhHHH
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 iv~~G~~~~~~~ 397 (1419)
++++|+++++.+
T Consensus 669 i~~~g~~~~l~~ 680 (694)
T TIGR01846 669 IAESGRHEELLA 680 (694)
T ss_pred EEEeCCHHHHHH
Confidence 999999998864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=310.01 Aligned_cols=210 Identities=22% Similarity=0.302 Sum_probs=165.3
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCC--CCeeeEEEECCccCCC-C---CCCceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH--LQVSGKITYNGHGFKE-F---VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~--~~~~G~I~~~G~~~~~-~---~~~~~~~yv~Q~d~~~ 221 (1419)
+++|+|+|+.+++||+++|+||||||||||+++|+|..++. .+.+|+|.++|.++.. . ..++.++|++|++.++
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 16 NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 35999999999999999999999999999999999987642 1348999999987642 1 1245799999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||+||+.++....+... + + .....++..++.+|+.+...... +
T Consensus 96 ~-~tv~~~l~~~~~~~~~~~--~---~----------------------------~~~~~~~~~~~~~~l~~~~~~~~-~ 140 (249)
T PRK14253 96 P-MSIYENVAYGLRAQGIKD--K---K----------------------------VLDEVVERSLRGAALWDEVKDRL-K 140 (249)
T ss_pred c-ccHHHHHHhHHHhcCCCc--h---H----------------------------HHHHHHHHHHHHcCCchhhhHHh-h
Confidence 6 899999987643211100 0 0 00122455666777643211111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
.....|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+..++.+.+|++++|
T Consensus 141 ~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~-~tii~~sh~~~~~~~~~d~i~~l 217 (249)
T PRK14253 141 SHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--N-YTIVIVTHSMQQARRISDRTAFF 217 (249)
T ss_pred cCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--C-CeEEEEecCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999999864 3 56777889999999999999999
Q ss_pred cCCeEEEEcChhhH
Q 000562 382 SEGQIVYQGPRVSV 395 (1419)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1419)
++|+++..|+.+++
T Consensus 218 ~~G~i~~~g~~~~~ 231 (249)
T PRK14253 218 LMGELVEHDDTQVI 231 (249)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999987765
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=311.71 Aligned_cols=208 Identities=22% Similarity=0.274 Sum_probs=163.1
Q ss_pred eeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCC--CeeeEEEECCccCCCC-----CCCceEEEEccCCCCC
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL--QVSGKITYNGHGFKEF-----VPPRTSAYVSQQDWQV 221 (1419)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 221 (1419)
++|+|+|+.+++||+++|+||||||||||+++|+|.+++.. +.+|+|.++|+++... ..++.++|++|++.++
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~ 113 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPF 113 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCccc
Confidence 59999999999999999999999999999999999976321 2489999999887431 1246799999998877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+ .||.||+.++....+.. . + .+..++..++.+||........ +
T Consensus 114 ~-~tv~~nl~~~~~~~~~~---~---~-----------------------------~~~~~~~~l~~~~l~~~l~~~~-~ 156 (274)
T PRK14265 114 P-KSIYENIAFAPRANGYK---G---N-----------------------------LDELVEDSLRRAAIWEEVKDKL-K 156 (274)
T ss_pred c-ccHHHHHHhHHHhcCch---H---H-----------------------------HHHHHHHHHHHcccchhhHHHh-c
Confidence 6 49999998754321100 0 0 0011334555666532111111 2
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
..+..|||||||||+|||||+.+|++++|||||+|||..++..+.+.|+++.+ +++|+.++|+.+++.+++|++++|
T Consensus 157 ~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~---~~tiii~sH~~~~~~~~~d~i~~l 233 (274)
T PRK14265 157 EKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE---QYTIIMVTHNMQQASRVADWTAFF 233 (274)
T ss_pred CCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc---CCEEEEEeCCHHHHHHhCCEEEEE
Confidence 33457999999999999999999999999999999999999999999998853 356777999999999999999999
Q ss_pred c---------CCeEEEEcChhhHH
Q 000562 382 S---------EGQIVYQGPRVSVL 396 (1419)
Q Consensus 382 ~---------~G~iv~~G~~~~~~ 396 (1419)
+ +|++++.|+.+++.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred ecccccccccCceEEEeCCHHHHH
Confidence 7 89999999998874
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=301.95 Aligned_cols=196 Identities=24% Similarity=0.378 Sum_probs=161.2
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 221 (1419)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|+++....+ ++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999998765 9999999998754332 35799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccccccC
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1419)
+++|+.||+.++........ . .+....++++++.+||.+..++.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~~~---------~------------------------~~~~~~~~~~l~~~~l~~~~~~~~-- 139 (220)
T TIGR02982 95 GFLTARQNVQMALELQPNLS---------Y------------------------QEARERARAMLEAVGLGDHLDYYP-- 139 (220)
T ss_pred CCCCHHHHHHHHHHhccCCC---------H------------------------HHHHHHHHHHHHHcCChhhhhcCh--
Confidence 88999999988643221000 0 001224677889999987666554
Q ss_pred ccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeEEEE
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~vilL 381 (1419)
+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+.. +++++.++|+.. ..+.+|+|++|
T Consensus 140 ---~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~-~~tii~~sh~~~-~~~~~d~v~~l 214 (220)
T TIGR02982 140 ---HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQ-GCTILIVTHDNR-ILDVADRIVHM 214 (220)
T ss_pred ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHc-CCEEEEEeCCHH-HHhhCCEEEEE
Confidence 4699999999999999999999999999999999999999999999987533 455555677765 56899999999
Q ss_pred cCCeE
Q 000562 382 SEGQI 386 (1419)
Q Consensus 382 ~~G~i 386 (1419)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-32 Score=325.77 Aligned_cols=210 Identities=29% Similarity=0.371 Sum_probs=176.3
Q ss_pred cceeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCC-----CCCceEEEEccCC--
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-- 218 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d-- 218 (1419)
....+++||||.+++||+++|+|+||||||||.++|+|+++|. +|+|.++|.+.+.. ..++.+-+|+|++
T Consensus 302 ~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~---~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 4568999999999999999999999999999999999999886 99999999872111 1235677888876
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCccccccc
Q 000562 219 WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1419)
Q Consensus 219 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1419)
.+.|.+||+++|.-......... ..+.+.+++++++..||+.-
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~---------------------------------~~~~~~rv~~ll~~VgL~~~---- 421 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGS---------------------------------GAERRARVAELLELVGLPPE---- 421 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccc---------------------------------hHHHHHHHHHHHHHcCCCHH----
Confidence 57899999999986654332211 01123358889999999842
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
..+++...|||||||||+|||||+.+|+++++|||||+||++++.+|.+.|+++.++. +.+.+.|+|+..-+..+||+|
T Consensus 422 ~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~-g~t~lfISHDl~vV~~i~drv 500 (539)
T COG1123 422 FLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEEL-GLTYLFISHDLAVVRYIADRV 500 (539)
T ss_pred HHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHh-CCEEEEEeCCHHHHHhhCceE
Confidence 3346677899999999999999999999999999999999999999999999998876 566777999999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|+||+.||.+++.
T Consensus 501 ~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 501 AVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred EEEECCeEEEeCCHHHHh
Confidence 999999999999988874
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=304.77 Aligned_cols=194 Identities=25% Similarity=0.424 Sum_probs=153.9
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1419)
+.+|+|+|+++++|++++|+||||||||||+++|+|..++. +|+|.++|.++..... ++.++|++|++..++ .
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 92 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G 92 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c
Confidence 35999999999999999999999999999999999998765 8999999987654322 357999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCcccccc-------
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT------- 297 (1419)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 297 (1419)
||.||+.+..... . ...++.+++.++|++..+.
T Consensus 93 tv~e~l~~~~~~~----~------------------------------------~~~~~~~l~~~~l~~~~~~~~~~~~~ 132 (220)
T cd03245 93 TLRDNITLGAPLA----D------------------------------------DERILRAAELAGVTDFVNKHPNGLDL 132 (220)
T ss_pred hHHHHhhcCCCCC----C------------------------------------HHHHHHHHHHcCcHHHHHhccccccc
Confidence 9999997642110 0 0012234444555443332
Q ss_pred cccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCe
Q 000562 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1419)
Q Consensus 298 ~vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~ 377 (1419)
.+. .....||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++ + ++|+.++|+.... +++|+
T Consensus 133 ~~~-~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~-~tii~~sH~~~~~-~~~d~ 207 (220)
T cd03245 133 QIG-ERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--D-KTLIIITHRPSLL-DLVDR 207 (220)
T ss_pred eec-CCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--C-CEEEEEeCCHHHH-HhCCE
Confidence 222 23457999999999999999999999999999999999999999999998764 3 5666677877765 79999
Q ss_pred EEEEcCCeEEEEc
Q 000562 378 VILLSEGQIVYQG 390 (1419)
Q Consensus 378 vilL~~G~iv~~G 390 (1419)
+++|++|++++.|
T Consensus 208 v~~l~~g~i~~~~ 220 (220)
T cd03245 208 IIVMDSGRIVADG 220 (220)
T ss_pred EEEEeCCeEeecC
Confidence 9999999998764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=311.69 Aligned_cols=207 Identities=23% Similarity=0.293 Sum_probs=169.6
Q ss_pred eeeeecceEeEeCCeEEEEEcCCCCcHHHHHHHHHcCcCCCCCeeeEEEECCccCCCCCC------CceEEEEccCC--C
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQD--W 219 (1419)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 219 (1419)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|+++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 46999999999999999999999999999999999998765 9999999998765332 45799999997 3
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCccHHHHHHHhhhcccchhHHHHHHHHHhCCc-cccccc
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTL 298 (1419)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~did~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~ 298 (1419)
+.+..|+.|++.+...... . .+ ..+....++.+++.+||. ...++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~-~--~~------------------------------~~~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLL-S--LD------------------------------KAERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhc-c--CC------------------------------HHHHHHHHHHHHHHcCCChhHhhCC
Confidence 5677999999976422100 0 00 000122467788899996 445544
Q ss_pred ccCccCCCCChHHhHHHHHHHHHhCCCcEeEEecCCCCCCHHHHHHHHHHHHHHHhccCCeEEEEEecChhHHHhhcCeE
Q 000562 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 299 vg~~~~~~LSGGqkkRvsia~al~~~p~illlDEptsgLDs~~~~~i~~~l~~~~~~~~~t~ii~i~q~~~~~~~~~D~v 378 (1419)
+ +.||||||||++|||||+.+|++++|||||+|||..++..+.+.|+++++. .+++++.++|+..++.+++|++
T Consensus 149 ~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~-~~~tiiivsH~~~~i~~~~d~i 222 (268)
T PRK10419 149 P-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQ-FGTACLFITHDLRLVERFCQRV 222 (268)
T ss_pred C-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHH-cCcEEEEEECCHHHHHHhCCEE
Confidence 4 469999999999999999999999999999999999999999999998753 2566777899999999999999
Q ss_pred EEEcCCeEEEEcChhhHH
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~iv~~G~~~~~~ 396 (1419)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999987753
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=313.73 Aligned_cols=196 Identities=28% Similarity=0.397 Sum_probs=154.6
Q ss_pred eeeeeceeeEEeCCeEEEEEcCCCCChhHHHHhHhCCCCCceEEEEEEECCccCCc---ccccceEEEEccCCCCCCCcc
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1419)
Q Consensus 842 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 918 (1419)
+.+|+|+|+++++||+++|+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 469999999999999999999999999999999999865 468999999987532 233457999999987775 69
Q ss_pred HHHHHHHHhhhcCCCCCcHHHHHHHHHHHHHHcCCccccCC-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCcce
Q 000562 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1419)
Q Consensus 919 v~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~l~~~~~~-------~~g~~~~~~lSgGqrqrl~iA~~L~~~p~ill 991 (1419)
|+|++.+....+ ..+ ..++.++..++.+..+. ... ..+..||||||||++||++|+.+|++++
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999998743211 111 11222333333222111 111 1246899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhcCeEEEEecCCEEEEeCCC
Q 000562 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 992 LDEPTsgLD~~~~~~i~~~l~~l~~~g~tvi~~~H~~~~~~~~~~D~v~~l~~gG~~~~~G~~ 1054 (1419)
|||||+|||+.++..+.+.|++++ +|+|||+++|+++ ++ +.+|++++|.+ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7999999999976 34 57999999986 789998874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1419 | ||||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-14 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-10 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 8e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-09 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-09 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 4e-08 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-08 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 6e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-08 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-07 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 2e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 2e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 3e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 7e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 7e-07 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 1e-06 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 7e-06 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 8e-06 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 8e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 2e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 3e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 5e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 6e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 7e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 7e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-04 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-04 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 1e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 2e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 2e-04 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 3e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 3e-04 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 3e-04 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 4e-04 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 5e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 5e-04 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 6e-04 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-04 |
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 34/218 (15%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
L + G + A++G +G GK+TL+D+L G R G IE
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE--------------VY 65
Query: 902 RISGYCEQNDIHSPGLTVLESLLF-----SAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ G+ Q +VL+ +L P + + ++ + LT L
Sbjct: 66 QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD----YQVAMQALDYLNLTHL 121
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
+ LS QR+ + IA + + ++ +DEPTS LD IV+ + ++
Sbjct: 122 AKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ 176
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ T+V T HQP+ + ++ L + + G
Sbjct: 177 SQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 47/269 (17%), Positives = 91/269 (33%), Gaps = 55/269 (20%)
Query: 130 MTEAL-LRQLRI-YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
M +AL + L Y+ + L+ + + +LG GK+TLL L G
Sbjct: 1 MNKALSVENLGFYYQAEN---FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMIT 247
GKI ++ +V Q +V + V M
Sbjct: 58 I---QGKIEVY----------QSIGFVPQFFSSPFAYSVLDI---------VL----M-- 89
Query: 248 ELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307
G + +FA V + L L A +
Sbjct: 90 ---------GRST------HINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS-----L 129
Query: 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367
SGGQ++ + + +++ +DE ++ LD + ++ L ++ + T V + QP
Sbjct: 130 SGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP 189
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ + + +LL++ + G ++L
Sbjct: 190 N-QVVAIANKTLLLNKQNFKF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 8e-25
Identities = 45/179 (25%), Positives = 75/179 (41%), Gaps = 18/179 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--RISGYCE 908
G + L+G +GAGKTT + +++ + + G + + G +E ++ Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 909 QNDIHSPGLTVLESLLFSAWL-RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
+ + +E L F A S E+E VE E+ L +
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFYASSSS-EIEEM---VERATEIAGLGEKIKDRVS----- 145
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
S ++L IA L+ NP + +DEPTSGLD A V + ++ G TI+ + H
Sbjct: 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 56/254 (22%), Positives = 85/254 (33%), Gaps = 62/254 (24%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-- 204
K IL +S I + L+GP +GKTT L ++ + SG +T G E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP 83
Query: 205 --------FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
++P AY M E L F S E+
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYASSSS-----EIEEM---- 126
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316
VE +I GL V S G ++L
Sbjct: 127 -------------------------VERATEIAGLGEKIKDRV-----STYSKGMVRKLL 156
Query: 317 TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376
L+ R+ +DE ++GLD ++ K LK +++ +G T++ E L D
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVEFLCD 214
Query: 377 DVILLSEGQIVYQG 390
+ L+ G IV G
Sbjct: 215 RIALIHNGTIVETG 228
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 3e-24
Identities = 45/223 (20%), Positives = 83/223 (37%), Gaps = 32/223 (14%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIE-GDIYISGYPKRQETF 900
L ++G R G + LVG +GAGK+TL+ +AG G I+ + + +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQPLEAWSATK--L 71
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
A Y Q V L + +T+ + +V + L G
Sbjct: 72 ALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLNDVAGALALDDKLGRS 123
Query: 961 IGLPGINGLSTEQRKRLTIA-------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
N LS + +R+ +A + ++ +DEP + LD + + + +
Sbjct: 124 T-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA 178
Query: 1014 IVNTGRTIVCTIHQPSIDI---FESFDELLFMKRGGELIYAGP 1053
+ G IV + H D+ +K GG+++ +G
Sbjct: 179 LSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 3e-15
Identities = 52/291 (17%), Positives = 86/291 (29%), Gaps = 94/291 (32%)
Query: 130 MTEAL-LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M+ + L+ + T L LSG +R + L+GP +GK+TLL +AG
Sbjct: 1 MSIVMQLQDV----AES---TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG- 52
Query: 189 LQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
G I + G + + AY+SQQ V L
Sbjct: 53 ---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL--------------- 94
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
L + ++ + + L LD
Sbjct: 95 --TLHQH-------DKTRTEL---------------LNDVAGALALDDKLGRSTNQ---- 126
Query: 306 GISGGQKKRL--------TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357
+SGG+ +R+ T + ++L +DE N LD + +
Sbjct: 127 -LSGGEWQRVRLAAVVLQITPQANPAG-QLLLLDEPMNSLD----------VAQQSALDK 174
Query: 358 --------GTTVISLL----QPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G ++ A LL G+++ G R VL
Sbjct: 175 ILSALSQQGLAIVMSSHDLNHTLRHA----HRAWLLKGGKMLASGRREEVL 221
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 1e-23
Identities = 51/242 (21%), Positives = 111/242 (45%), Gaps = 29/242 (11%)
Query: 827 DVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGII 884
+ ++L Q G ++ +L ++ G L G++GAGKTTL+++L T
Sbjct: 19 HMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---- 74
Query: 885 EGDIYISGYPKRQETF------ARISGYCEQNDIH---SPGLTVLESLL--FSAWLRLPS 933
G + + G + + I G+ + G V++ ++ + +
Sbjct: 75 SGTVNLFGKMPGKVGYSAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQ 132
Query: 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993
+I+ + R ++++LV +++ + IG LST +++R+ IA L+ P ++ +D
Sbjct: 133 DID-DEIRNEAHQLLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILD 186
Query: 994 EPTSGLDARAAAIVMRTVRNIVNTGR--TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
EP +GLD A ++ + ++ ++ ++ H +I +F ++L +K G+ I
Sbjct: 187 EPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQ 244
Query: 1052 GP 1053
G
Sbjct: 245 GA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 7e-20
Identities = 59/298 (19%), Positives = 105/298 (35%), Gaps = 57/298 (19%)
Query: 108 TVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLL 167
+ H S +P + + + Q+ + + TIL +S I +L
Sbjct: 2 SSHHHHHHSSGLVPRGSHMLIQL-----DQIGRMKQGK---TILKKISWQIAKGDKWILY 53
Query: 168 GPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-----YVSQ---QDW 219
G +GKTTLL L SG + G + + +VS + +
Sbjct: 54 GLNGAGKTTLLNILNAY---EPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110
Query: 220 QVAEMTVRETLDFAGQCQGVGS-KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKT 278
Q E V + V S + I + DE +
Sbjct: 111 QEGE-RVIDV---------VISGAFKSI-------GVYQDIDDEIRNE------------ 141
Query: 279 SLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLD 338
++K++G+ A +G +S G+K+R+ L+G +VL +DE + GLD
Sbjct: 142 ---AHQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 339 SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
++ L + + +I + E F ++LL +GQ + QG +L
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.3 bits (238), Expect = 4e-22
Identities = 37/196 (18%), Positives = 78/196 (39%), Gaps = 25/196 (12%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910
G + G +G GKTTL+ ++ + +G+I +G P + +I + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVPIT-KVKGKI-FFLPEE 86
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
I ++V + L A L ++ + + + +E VE+ L + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK------LGELS 135
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
+R+ +A L+ N I +D+P +D + V++++ I+ G I+ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 1030 IDIFESFDELLFMKRG 1045
D + +
Sbjct: 193 --ELSYCDVNENLHKY 206
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 4e-15
Identities = 37/248 (14%), Positives = 80/248 (32%), Gaps = 64/248 (25%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE---- 204
+L+ ++ I + GP GKTTLL ++ L + G+I YNG +
Sbjct: 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGK 79
Query: 205 --FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
F+P +++V + L + G+K ++
Sbjct: 80 IFFLPEEIIVP--------RKISVEDYLKAVA-------------------SLYGVKVNK 112
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
+ + ++ + + L +S G +R+ L+
Sbjct: 113 NE-----------------IMDALESVEVLDLKKKL------GELSQGTIRRVQLASTLL 149
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
A + +D+ +D + ++++K + + G +IS + E D L
Sbjct: 150 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIIS----SREELSYCDVNENLH 204
Query: 383 EGQIVYQG 390
+
Sbjct: 205 KYSTKIDK 212
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 7e-19
Identities = 39/215 (18%), Positives = 78/215 (36%), Gaps = 49/215 (22%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQETFARISGYCEQN-D 911
G ++G +G+GKTTL+ ++G G+I+I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 912 IHSPGLTVLESLLFSAWLR-LPSEIELETQRAFVEEVMELVELTS---------LSGALI 961
+ G+TV + + L+ L ++ E+++ ++L LS
Sbjct: 83 AYEIGVTVNDIVYLYEELKGLDRDL--------FLEMLKALKLGEEILRRKLYKLSA--- 131
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
G Q + ++ L + P IV +DEP +DA ++ R ++ G+
Sbjct: 132 ------G----QSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY---GKEG 178
Query: 1022 VCTIHQPSIDIFESF---DELLFMKRGGELIYAGP 1053
+ H ++ + + G L
Sbjct: 179 ILVTH----ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 44/255 (17%), Positives = 84/255 (32%), Gaps = 63/255 (24%)
Query: 140 IYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199
G + L++++ + ++LGP SGKTTLL A++G L SG I NG
Sbjct: 10 TLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGL----LPYSGNIFING 64
Query: 200 HGFKEFVPPRTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
++ Y + + +TV + + + +G+ R+
Sbjct: 65 MEVRKI--RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGL-----------DRDL---- 107
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 314
++K L L +E+L+ +S GQ
Sbjct: 108 -----------------------FLEMLKALKLG--------EEILRRKLYKLSAGQSVL 136
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374
+ T L ++ +DE +D++ + I +Y+K G I +
Sbjct: 137 VRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-----GKEGILVTHELDMLNLY 191
Query: 375 FDDVILLSEGQIVYQ 389
+ G +
Sbjct: 192 KEYKAYFLVGNRLQG 206
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 8e-18
Identities = 40/190 (21%), Positives = 74/190 (38%), Gaps = 45/190 (23%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L G F + ++G +G GKTTL+ +LAG + G + +S K Q+
Sbjct: 367 VLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVS--MKPQKIAP 424
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT------- 954
+ G TV + LF ++ + F +V++ + +
Sbjct: 425 KFPG------------TVRQ--LFFK--KIRGQFL---NPQFQTDVVKPLRIDDIIDQEV 465
Query: 955 -SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
LSG G + +R+ I + L I +DEP++ LD+ I + +R
Sbjct: 466 QHLSG---------G----ELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 1014 IV-NTGRTIV 1022
+ + +T
Sbjct: 513 FILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-15
Identities = 35/183 (19%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEG---DIYISGYPKRQETFARISGYC 907
RPG + LVG +G GK+T + +LAG + G + I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 908 EQND--------IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
E + + + + + L ++ +E V+ +++++L ++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
I LS + +R I + V + DEP+S LD + + +R+++ +
Sbjct: 218 -----DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1020 TIV 1022
++
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 67/388 (17%), Positives = 117/388 (30%), Gaps = 94/388 (24%)
Query: 63 EQRL-VLDRLV---------NAVEDDPERFFDRMRKRCEAVDLELPKIEVRFQNLTVESF 112
E L VLD L +V +D +P +RF+ ++
Sbjct: 278 EHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRFRTEALQFR 337
Query: 113 VHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSS 172
+ + L L+ +G+ +L+ G S + +++G +
Sbjct: 338 IADATEDLQNDSASRAF----SYPSLKKTQGDF----VLNVEEGEFSDSEILVMMGENGT 389
Query: 173 GKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDF 232
GKTTL+ LAG L G+ + Q+ TVR+
Sbjct: 390 GKTTLIKLLAGALKPD---EGQDIPKL----------NVSMKPQKIAPKFPGTVRQLFF- 435
Query: 233 AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD 292
+KI G + ++K L +D
Sbjct: 436 --------------------KKIRGQFLNPQ-----------------FQTDVVKPLRID 458
Query: 293 TCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHS 352
D V +SGG+ +R+ L PA + +DE S LDS K ++
Sbjct: 459 DIIDQEVQH-----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRF 513
Query: 353 TRALDGTTVI------SLLQPAPEAYELFDDVILLSEGQIV--YQGPRVSVLD----FFA 400
T + A L D VI+ + S+L F
Sbjct: 514 ILHN-KKTAFIVEHDFIM------ATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLK 566
Query: 401 SMGFSC-PKRKNVADFLQEVTSKKDQEQ 427
++ + + + ++ S+ D+EQ
Sbjct: 567 NLNVTFRRDPNSFRPRINKLDSQMDKEQ 594
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 3e-08
Identities = 54/273 (19%), Positives = 81/273 (29%), Gaps = 83/273 (30%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y N KL L RP ++ L+G GK+T L LAG+ +L G+
Sbjct: 87 YSANSFKLHRLP----TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFDDPPE 139
Query: 201 GF----------------KEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYD 244
K + Q + ++ + G+ +
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIP-RAIKGPVQKVGELLKL----- 193
Query: 245 MITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304
R EK V+ +KIL L+ V +
Sbjct: 194 ------RMEKSP-----------------------EDVKRYIKILQLEN-----VLKRDI 219
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTV 361
+ +SGG+ +R G V A V DE S+ LD I+ L V
Sbjct: 220 EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-----PTKYV 274
Query: 362 I------SLLQPAPEAYELFDDVILLSEGQIVY 388
I S+L L D V ++ VY
Sbjct: 275 ICVEHDLSVLD------YLSDFVCIIYGVPSVY 301
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 1e-17
Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 48/228 (21%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYPKRQETFA 901
L NV+ G + G +G+GK+TL+ ++AG +I GD+ G K+
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYEIR 77
Query: 902 RISGYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELT- 954
R G Q P V + + F+ + V++ ME V L
Sbjct: 78 RNIGIAFQY----PEDQFFAERVFDEVAFAVKNFYPDRDPV---PL--VKKAMEFVGLDF 128
Query: 955 ---------SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
LSG G +++R+ IA +V P I+ +DEP GLD
Sbjct: 129 DSFKDRVPFFLSG---------G----EKRRVAIASVIVHEPDILILDEPLVGLDREGKT 175
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++R V G+T++ H + D ++ +++ G+ ++ G
Sbjct: 176 DLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 4e-09
Identities = 53/260 (20%), Positives = 94/260 (36%), Gaps = 62/260 (23%)
Query: 142 RGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201
RG + L+++S +I L+ G SGK+TLL +AG + SG + Y+G
Sbjct: 14 RGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI---EPTSGDVLYDGE- 69
Query: 202 FKEFVPP--RTSAYVSQQ-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
++ R Q + Q V + + FA + +
Sbjct: 70 -RKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPD------RDPVPL------ 116
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK----GISGGQKKR 314
V+ M+ +GLD D +SGG+K+R
Sbjct: 117 -----------------------VKKAMEFVGLDF-------DSFKDRVPFFLSGGEKRR 146
Query: 315 LT-TGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEA 371
+ ++ P +L +DE GLD +++ ++ + G TVI +
Sbjct: 147 VAIASVIVHEP-DILILDEPLVGLDREGKTDLLRIVEKWKT----LGKTVILISHDIETV 201
Query: 372 YELFDDVILLSEGQIVYQGP 391
D V++L +G+ V+ G
Sbjct: 202 INHVDRVVVLEKGKKVFDGT 221
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 83.5 bits (207), Expect = 2e-16
Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 38/189 (20%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
LV G + G + ++G +G GKTT +L G T EG + +I
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK---------QIL 332
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--------SL 956
Y Q + TV + +L S+ L T F EEV + + L L
Sbjct: 333 SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDL 386
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
SG G + ++L IA L + +D+P+S LD IV + ++ +
Sbjct: 387 SG---------G----ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 1017 TGRTIVCTI 1025
+ + I
Sbjct: 434 ERKAVTFII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 39/181 (21%), Positives = 68/181 (37%), Gaps = 18/181 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR---------KTGGIIEGDIYISGYPKRQETFARI 903
+ + ++G +G GKTT++ +LAG G E G + F +
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK-EIYNYFKEL 81
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
E +H S + + +R +EV EL+ +T+L
Sbjct: 82 -YSNELKIVHKIQYVEYASKFLKGTVN--EILTKIDERGKKDEVKELLNMTNLWN----- 133
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
N LS +RL +A L+ + D+P+S LD R + + +R ++ IV
Sbjct: 134 KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
Query: 1024 T 1024
Sbjct: 194 D 194
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 2e-12
Identities = 58/324 (17%), Positives = 101/324 (31%), Gaps = 90/324 (27%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L +G + + +LGP GKTT L G + G +T +
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------Q 330
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
+Y Q+ + + TV++ L+ +
Sbjct: 331 ILSYKPQRIFPNYDGTVQQYLE---------------------------------NASKD 357
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
+ + E + K L L ++ V D +SGG+ ++L L A +
Sbjct: 358 ALSTSSWF----FEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLAKEADLYV 408
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS--LLQPAPEAYELFDDVILLSEGQI 386
+D+ S+ LD Y + K +K TR T +I L + D +I+ +G+
Sbjct: 409 LDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL----SIHDYIADRIIVF-KGEP 463
Query: 387 VYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV------------------TSKKDQEQY 428
G S + M +FL+E+ S D+ Q
Sbjct: 464 EKAGLATSPVTLKTGM----------NEFLRELEVTFRRDAETGRPRVNKIGSYLDRVQK 513
Query: 429 WSNPYLPYRYISPGKFAEAFHSYH 452
Y + G H +H
Sbjct: 514 ERGDYYSMVLSTQGSIEGRHHHHH 537
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 8e-09
Identities = 32/206 (15%), Positives = 65/206 (31%), Gaps = 35/206 (16%)
Query: 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQ 216
+ + + +LG GKTT+L LAG + + K F Y
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYF-- 78
Query: 217 QDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQ 276
++ E+ + + Q + ++ + + ++
Sbjct: 79 KELYSNELKIVH------KIQ----YVEYASKFLKGTVNEILTKIDERGK---------- 118
Query: 277 KTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNG 336
+ + ++L + + +SGG +RL L+ A V D+ S+
Sbjct: 119 -----KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADVYIFDQPSSY 168
Query: 337 LDSSTTYQIIKYLKHSTRALDGTTVI 362
LD + K ++ L VI
Sbjct: 169 LDVRERMNMAKAIR---ELLKNKYVI 191
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 3e-16
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 45/189 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L G R G + +VG +G GKTT + +LAG T G +E D+ ++ K Q
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA--YKPQ----Y 425
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 954
I TV E L +L S + E+++ + +
Sbjct: 426 IK--------AEYEGTVYELLSKIDSSKLNS-------NFYKTELLKPLGIIDLYDRNVE 470
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 471 DLSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 517
Query: 1015 V-NTGRTIV 1022
+ +T +
Sbjct: 518 MEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-13
Identities = 53/223 (23%), Positives = 92/223 (41%), Gaps = 31/223 (13%)
Query: 811 PFQPLSMAFGNINYFVDVPVELKQE-----GVLEDRLQLLVNVTGAFRPGVLTALVGVSG 865
PF +S+ V++P +L ++ GV L + G++ +VG +G
Sbjct: 80 PFNAISI--------VNLPEQLDEDCVHRYGVNAFVL----YRLPIVKDGMVVGIVGPNG 127
Query: 866 AGKTTLMDVLAGR----KTGGIIEGDIYISGYP--KRQETFARISGYCEQNDIHSPGLTV 919
GKTT + +LAG+ D I + + Q F R+ E + P
Sbjct: 128 TGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVD 186
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
L +R ++ + EEV++ +EL ++ + LS + +R+ I
Sbjct: 187 LLPKAVKGKVR--ELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRVAI 239
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
A L+ F DEP+S LD R V R +R + N G+ ++
Sbjct: 240 AAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-13
Identities = 48/275 (17%), Positives = 90/275 (32%), Gaps = 71/275 (25%)
Query: 136 RQLRIYRGNRSK---LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS 192
R+ + K L+ G IR + ++GP GKTT + LAG
Sbjct: 354 RETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTE 410
Query: 193 GKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
GK+ ++ + P E TV E +++++
Sbjct: 411 GKVEWDLT--VAYKPQYIK--------AEYEGTVYE----------------LLSKIDSS 444
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
+ + ++K LG+ D V D +SGG+
Sbjct: 445 KLNSNFY----------------------KTELLKPLGIIDLYDRNVED-----LSGGEL 477
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQP 367
+R+ L+ A + +DE S LD + + ++H + T V+ ++
Sbjct: 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMI-- 535
Query: 368 APEAYELFDDVILLSEGQIVYQGPRVSVLDFFASM 402
+ D +I+ EG+ G + + M
Sbjct: 536 ----DYVSDRLIVF-EGEPGRHGRALPPMGMREGM 565
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 4e-10
Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 47/240 (19%)
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
I N+ E L G + + I++ + ++GP +GKTT + LAG+L
Sbjct: 86 IVNLPEQLDEDCVHRYGVNA---FVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDM 245
+L + + + Q ++ + + Q V D+
Sbjct: 143 PNL---CEDNDSWDNVIR--------AFRGNELQNYFERLKNGEIRPVVKPQYV----DL 187
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
+ + + + +K +++ E ++K L L+ D +
Sbjct: 188 LPKAVKGKVRELLKKVDEVGK---------------FEEVVKELELENVLDRELHQ---- 228
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
+SGG+ +R+ L+ A F DE S+ LD ++ I+ L + +G V+
Sbjct: 229 -LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-----EGKAVL 282
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 7e-16
Identities = 46/198 (23%), Positives = 80/198 (40%), Gaps = 37/198 (18%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQ------ 897
V+ + G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84
Query: 898 -ETFARISGYCEQNDIHS-PGLTVLE-----------SLLFSAWLRLPSEIELETQRAFV 944
TF Q +TVLE S L S + + E E
Sbjct: 85 VRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-VEKA 134
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+++E ++L+ L G LS Q K + I L+ NP ++ MDEP +G+ A
Sbjct: 135 FKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 1005 AIVMRTVRNIVNTGRTIV 1022
+ V + G T +
Sbjct: 190 HDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 49/230 (21%), Positives = 82/230 (35%), Gaps = 57/230 (24%)
Query: 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LD +S + +TL++GP SGK+TL+ + G L G++ + P
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL---KADEGRVYFENKDITNKEP 76
Query: 208 P--------RTSAYVSQQDWQVA----EMTVRETLDFAGQCQGVGSKYDMITELARREKI 255
RT +Q EMTV E L C G + + ++
Sbjct: 77 AELYHYGIVRT--------FQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEE 128
Query: 256 AGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315
++ K+F + ++ L L D G+ +SGGQ K +
Sbjct: 129 EMVE---------KAFKI------------LEFLKLSHLYDRKAGE-----LSGGQMKLV 162
Query: 316 TTGELLVGPARVLFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
G L+ +++ MDE G+ + I + LK G T +
Sbjct: 163 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-----KGITFL 207
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 1e-15
Identities = 43/189 (22%), Positives = 75/189 (39%), Gaps = 45/189 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L G + G + +VG +G GKTT + +LAG T G IE D+ ++ P+ +
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKA--- 358
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-------- 954
TV E L S + + E+++ + +
Sbjct: 359 -----------DYEGTVYE--LLSK-----IDASKLNSNFYKTELLKPLGIIDLYDREVN 400
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LSG G + +R+ IA L+ + I +DEP++ LD V R +R++
Sbjct: 401 ELSG---------G----ELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHL 447
Query: 1015 V-NTGRTIV 1022
+ +T +
Sbjct: 448 MEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 34/186 (18%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGR----KTGGIIEGDIYISGYPKR--QETFARISG- 905
+ G++ +VG +G GK+T + +LAG+ G D I + Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 906 ---------YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
Y + G V+E L + + +EEV++ +EL ++
Sbjct: 105 EIRPVVKPQYVDLIPKAVKG-KVIELL------------KKADETGKLEEVVKALELENV 151
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
I LS + +R+ IA L+ N + F DEP+S LD R R +R +
Sbjct: 152 LEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 1017 TGRTIV 1022
G++++
Sbjct: 207 EGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-10
Identities = 56/297 (18%), Positives = 102/297 (34%), Gaps = 88/297 (29%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
L+ G I+ + ++GP GKTT + LAG GKI ++ + P
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLT--VAYKPQY 355
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A E TV E +++++ + + E
Sbjct: 356 IKA--------DYEGTVYE----------------LLSKIDASKLNSNFYKTE------- 384
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
++K LG+ D V + +SGG+ +R+ L+ A +
Sbjct: 385 ---------------LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLLRDADIYL 424
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTT-VIS----LLQPAPEAYELFDDVILLSEG 384
+DE S LD + + ++H + T V+ ++ + D +++ EG
Sbjct: 425 LDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID------YVSDRLMVF-EG 477
Query: 385 QIVYQGPRVSVLD-------FFASMGFSCPK-------RKNVADFLQEVTSKKDQEQ 427
+ G + + F AS+G + + R N S KD+EQ
Sbjct: 478 EPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEG------SVKDREQ 528
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 6e-06
Identities = 38/218 (17%), Positives = 80/218 (36%), Gaps = 44/218 (20%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+ +++ + ++GP +GK+T + LAG+L +L + + V
Sbjct: 35 AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL-------CGDNDSWDGV-- 85
Query: 209 RTSAYVSQQDWQVAEMTVRE-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
+ Q ++ + + Q V D+I + + + I +K ++
Sbjct: 86 --IRAFRGNELQNYFEKLKNGEIRPVVKPQYV----DLIPKAVKGKVIELLKKADETGK- 138
Query: 268 MKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARV 327
+E ++K L L+ + + +SGG+ +R+ L+ A
Sbjct: 139 --------------LEEVVKALELENVLEREIQH-----LSGGELQRVAIAAALLRNATF 179
Query: 328 LFMDEISNGLDSSTTYQI---IKYLKHSTRALDGTTVI 362
F DE S+ LD I+ L +G +V+
Sbjct: 180 YFFDEPSSYLDIRQRLNAARAIRRLSE-----EGKSVL 212
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 3e-15
Identities = 55/224 (24%), Positives = 96/224 (42%), Gaps = 35/224 (15%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII---EGDIYISGYP--KRQET 899
L + + G +TA++G +G GK+TL GI+ G I P ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFN-----GILKPSSGRILFDNKPIDYSRKG 78
Query: 900 FARIS---GYCEQNDIHSP-----GLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMEL 950
++ G Q+ P +V + + F A ++LP + E+ +R V+ ++
Sbjct: 79 IMKLRESIGIVFQD----PDNQLFSASVYQDVSFGAVNMKLPED-EIR-KR--VDNALKR 130
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+
Sbjct: 131 TGIEHLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKL 185
Query: 1011 VRNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ + G TI+ H + D + MK G +I G
Sbjct: 186 LVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 64.1 bits (157), Expect = 4e-11
Identities = 56/280 (20%), Positives = 103/280 (36%), Gaps = 58/280 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
L ++ I+ +T +LG GK+TL G L SG+I ++ +
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL---KPSSGRILFDNKPIDY--SRKG 78
Query: 211 SAYVSQQ--------DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
+ + D Q+ +V + + F + E+ +R
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED-----EIRKR---------- 123
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT-TGELL 321
V+ +K G++ D +S GQKKR+ G L+
Sbjct: 124 -------------------VDNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLV 159
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
+ P +VL +DE + GLD +I+K L + G T+I D+V ++
Sbjct: 160 MEP-KVLILDEPTAGLDPMGVSEIMKLLVEMQKE-LGITIIIATHDIDIVPLYCDNVFVM 217
Query: 382 SEGQIVYQGPRVSVL---DFFASMGFSCPKRKNVADFLQE 418
EG+++ QG V + + P+ ++ + L+E
Sbjct: 218 KEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 70.7 bits (172), Expect = 3e-12
Identities = 104/695 (14%), Positives = 207/695 (29%), Gaps = 221/695 (31%)
Query: 6 ENVFSRTSSFRDEVEDEEALRWAALERLPTYARARRGIFKNVVGDVKEVDVSELAVQEQR 65
E+ F +D V+D + I ++ + +S+ AV
Sbjct: 26 EDAFVDNFDCKD-VQDMP-----------------KSILSK--EEIDHIIMSKDAVSGTL 65
Query: 66 LVLDRLVNAVEDDPERFFDRMRKRCEAVDLELP------KIEVRFQNLTVESFVHLGSRA 119
+ L++ E+ ++F + E + + K E R ++ ++ R
Sbjct: 66 RLFWTLLSKQEEMVQKFVE------EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 120 LPTIPNFI-FNMT-EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177
F +N++ +LR L L RP++ L+ G SGKT +
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLR------QALLEL-------RPAKNVLIDGVLGSGKTWV 166
Query: 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237
L + ++ KI F W + + C
Sbjct: 167 ALDVCLSYKVQCKMDFKI------F----------------W----LNL-------KNCN 193
Query: 238 GVGSKYDMITELARR-EKIAGIKPDEDLDIFMKSFALGGQKTSLVVE--YIMKILGLD-- 292
+ +M+ +L + + + D +I ++ ++ + L+ Y +L L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 293 -----------TC-----------ADTLVGDEMLKGISGGQKKRLTTGELL--------- 321
+C D L LT E+
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 322 -----------VGPARV-LFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
P R+ + + I +GL + ++ + K T ++ + +++L+PA
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESS--LNVLEPA- 369
Query: 370 EAYELFDDVILLSEG-QIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQEQY 428
E ++FD + + I P +L S+ + + +V + ++ E+
Sbjct: 370 EYRKMFDRLSVFPPSAHI----PT-ILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 429 WSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN-HPAALSTSKYGEKRSEL 487
S ++ EL V + + H + + Y +
Sbjct: 421 PK----ESTI-----------SIP---SIYLELKVKLENEYALHRSIV--DHY-----NI 455
Query: 488 LKTSFNWQLLLMKRNSFIYVFKFIQLLIVALITMTVFFRTTMHH-KTIDDGGLYLGALYF 546
KT + L+ + Y + I HH K I+ F
Sbjct: 456 PKTFDSDDLIPPYLDQ--YFYSHI-----------------GHHLKNIEHPERMTL---F 493
Query: 547 SMVIILFNGFTEVSMLVAKLPVLYKHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAVT 606
MV + F F E K+ +H +W L+ L
Sbjct: 494 RMVFLDFR-FLE-----QKI----RHDS----TAW--NASGSILNTLQQLK--------F 529
Query: 607 Y--YVIGYDPNVVRFSRQLLLYF-FLHQMSIGLFR 638
Y Y+ DP ++ R + FL ++ L
Sbjct: 530 YKPYICDNDP---KYERLVNAILDFLPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.6 bits (164), Expect = 3e-11
Identities = 89/594 (14%), Positives = 188/594 (31%), Gaps = 164/594 (27%)
Query: 764 QAVVSKKE----LQERDR-----------RRKGENVVIELREYLQRSSSLNGKYFKQKGM 808
++++SK+E + +D K E +V +++++ +N K+
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV---QKFVEEVLRINYKFLMSPIK 99
Query: 809 VLPFQPLSMAFGNINYFVD----VPVELKQEGVLEDRLQLLVNVTGAF---RPGVLTALV 861
QP SM D + V RLQ + + A RP +
Sbjct: 100 TEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLID 156
Query: 862 GVSGAGKTTL-MDVLAGRKTGGIIEGDIY-ISGYPKRQETFARISGYCEQNDIHSPG--L 917
GV G+GKT + +DV K ++ I+ ++ C +SP L
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------------LKNC-----NSPETVL 199
Query: 918 TVLESLL------FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING--- 968
+L+ LL +++ S I+L + E+ L++ L+ L +
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 969 ----------LSTEQRKRLTIAVELVANPSIVFMDEPTSGL-DARAAAIVMRTVRNIVNT 1017
L T + K++T + A + + +D + L +++++ +
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLS-AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 1018 GRTIVCTIH-----------QPSIDIFESFDELLFMKRGGELIYAGPLGSKSC------- 1059
V T + + + ++++ + K +I +S
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTII-------ESSLNVLEPA 369
Query: 1060 ELIKYFE--AV--EGVPKIRPGYNPAAWMLEV---TSPVEESRLGVDFAEIYRRSNLFQR 1112
E K F+ +V I P +L + + + V+ ++++ S + ++
Sbjct: 370 EYRKMFDRLSVFPPSA-HI-----PTI-LLSLIWFDVIKSDVMVVVN--KLHKYSLVEKQ 420
Query: 1113 NRELVESL-------SKPSPSSKKLN--FSTKYSQSFANQFLACLRKQNLSYWRNPQYTA 1163
+E S+ + L+ Y +L QY
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHY------NIPKTFDSDDLIPPYLDQY-- 472
Query: 1164 VRFFYTVVISLMLGSICWKFG--AKRENQQDLFNAMGSMYVAVLFIG------ITNASAV 1215
FY G K + +++ F+ T +A
Sbjct: 473 ---FY------------SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 1216 QPVVS----VERYVSYRERAAGMYSALPFAFAQVVIEFPYVFGQALI---YCSI 1262
+++ ++ Y Y Y L A +++F + LI Y +
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNA----ILDFLPKIEENLICSKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 3e-08
Identities = 88/700 (12%), Positives = 171/700 (24%), Gaps = 205/700 (29%)
Query: 330 MDEISNGLDSSTTYQ-IIK-YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
MD + Y+ I+ + D V + + E D I+
Sbjct: 7 MDFETGEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE-IDH--------II 55
Query: 388 YQGPRVSVLDFFASMGFSCPKRKN---VADFLQEVTSKKDQEQY-WSNPYLPYRYISPGK 443
VS F K V F++EV + Y + + P
Sbjct: 56 MSKDAVSGTLRL----FWTLLSKQEEMVQKFVEEV----LRINYKFLMSPIKTEQRQPSM 107
Query: 444 FAEAFHSYHTGKNLSEELAVPFDRRFNHPAALSTSKYGEKRSELLKTSFNWQLLLMKRNS 503
+ DR +N + KY R + LL ++
Sbjct: 108 MTRMYIEQR-------------DRLYNDNQVFA--KYNVSRLQPYLKLRQA-LLELRPAK 151
Query: 504 FIYVF------KFIQLLIVA-------LITMT--VFFRTTMHHKTIDDGGLYLGALYFSM 548
+ + K + + M +F+ + + + L L + +
Sbjct: 152 NVLIDGVLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 549 VIILFNGFTEVSMLVAKLPVLY---KHRDLHFYPSWVYTIPSWALSIPTSLIESGFWVAV 605
+T S + + + + S Y L+
Sbjct: 210 D----PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---------ENCLL-------- 248
Query: 606 TYYVIG--YDPNVVR-F---SRQLLLYFFLHQMSIGLFRVIGSLGRNMIVAN----TFGS 655
V+ + F + LL + + + I + T
Sbjct: 249 ---VLLNVQNAKAWNAFNLSCKILLT-----TRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 656 FAMLVVMA--LGGFIISRDSIP----KWWIWGFWVSPLMYAQNAASVNEFLGHSWD--KK 707
+ ++ L +P +P + A S+ + L WD K
Sbjct: 301 DEVKSLLLKYLD---CRPQDLPREVLT-------TNPRRLSIIAESIRDGLAT-WDNWKH 349
Query: 708 AGNSNFS---------LGEAILRQR----SLFPESYW--------YWIG---------VG 737
+ L A R+ S+FP S W V
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409
Query: 738 AMLGYTLLF--NALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIE----LREY 791
+ Y+L+ T + + + K E R +++ + +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSI------YLELKVKLENEYALHRS----IVDHYNIPKTF 459
Query: 792 LQRSSSLNG--KYF--------KQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDR 841
+YF K M F + F++ +++ + +
Sbjct: 460 DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-FLEQ--KIRHDSTAWNA 516
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
++N TL + + I + D F
Sbjct: 517 SGSILN----------------------TLQQLKFYKPY--ICDNDPKYERLVNAILDFL 552
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR 941
E+N I S +L L + + E + QR
Sbjct: 553 P---KIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 5e-08
Identities = 84/589 (14%), Positives = 160/589 (27%), Gaps = 176/589 (29%)
Query: 682 FWVSPLMYAQNAASVNEFLGHSWDKKAGNSNFSLGEAI---LRQRSLFPESYWYWIGVGA 738
FW + ++ V +F+ N F L I RQ S+ Y
Sbjct: 68 FW---TLLSKQEEMVQKFVEEVLRI---NYKF-LMSPIKTEQRQPSMMTRMY-------- 112
Query: 739 MLGYTLLFNALFTFFLSYLNPLGKQQAVVSKKELQERDRRRKGENVVIELREYLQRSSSL 798
+ + L V +K + R + ++LR+ L
Sbjct: 113 ---------------IEQRDRLYNDNQVFAKYNVS---RLQP----YLKLRQALLELRP- 149
Query: 799 NGKYFKQKGM-----------VLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVN 847
K G+ V + +++++ E VLE +LL
Sbjct: 150 -AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 848 VTGAF--RPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETF--- 900
+ + R + + + + L +L + + ++ ++ K F
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNAFNLS 265
Query: 901 -------------ARISGYCEQN---DIHSPGLTVLESL-LFSAWL-----RLPSEIELE 938
+S + D HS LT E L +L LP E
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---- 321
Query: 939 TQRAFVEEVMELVELTSLSGALI--GLPGINGLSTEQRKRLTIAVEL---VANPSI---- 989
V S+ I GL + +LT +E V P+
Sbjct: 322 -----VLTTNPRR--LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 990 -----VFMDE---PTSGLDARAAAIVMRTVRNIVNT----------GRTIVCTIHQPSID 1031
VF PT L ++ V +VN + +I ++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 1032 IFESFDELLFMKRGGELI--YAGPLGSKSCELIK-----YF--------------EAVEG 1070
+ + + R ++ Y P S +LI YF E +
Sbjct: 435 LKVKLENEYALHR--SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 1071 VPKIRPGYNPAAWM---LEVTSPVEESRLGV-----DFAEIYRR-----SNLFQRNRELV 1117
+ + ++ + S + + + Y+ ++R LV
Sbjct: 493 FRMV---FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFYKPYICDNDPKYER---LV 545
Query: 1118 ESLSKPSPSSKKLNFSTKYSQSFANQFLACLRKQNLSYWRNPQY-TAVR 1165
++ L+F K ++ L + L + A +
Sbjct: 546 NAI---------LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 1e-05
Identities = 74/553 (13%), Positives = 150/553 (27%), Gaps = 158/553 (28%)
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK--YD 244
HH + + + + +K+ + V + + V ++ D + + SK D
Sbjct: 3 HHHHMDFETGEHQYQYKDILS------VFEDAF-VDNFDCKDVQDMP---KSILSKEEID 52
Query: 245 MI----TELARREKIAGI---KPDEDLDIFMKSFALGGQK------TSLVVEYIMKILGL 291
I ++ ++ K +E + F++ L + + + E +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL--RINYKFLMSPIKTEQRQPSMMT 109
Query: 292 D---TCADTLVGD-------------------EMLKGIS----------GGQKKRLTTGE 319
D L D + L + G K +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 320 LLVGPARVLFMDE----ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375
+ + MD ++ +S +++ L+ +D + +
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPE-TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 376 DDVILLSEGQIVYQGPRV-SVLD------FFASMGFSCP-----KRKNVADFLQEVTSKK 423
L VL + + SC + K V DFL T+
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 424 DQEQYWSNPYLPYRYISPGKFAEAFHSY--HTGKNLSEELAVPFDRRFNHPAALSTSKYG 481
+ S +P + Y ++L E+ +P LS
Sbjct: 289 ISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPREVLT------TNPRRLSI--IA 334
Query: 482 EKRSELLKTSFNW-QLLLMKRNSFIYVF-----------KFIQLLIV---ALITMTVF-- 524
E + L T NW + K + I F +L + A I +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 525 ------------FRTTMHHKTI-----DDGGLYLGALYFSMVIILFNGFTEVSMLVAKLP 567
+H ++ + + + ++Y E+ + +
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL-----------ELKVKLENEY 443
Query: 568 VLYKHRDL--HFYPSWVYTIPSWALSIPTSLIESGFWVAVTYYVIGY-------DPNVVR 618
L HR + H+ + S L P ++ Y IG+ +
Sbjct: 444 AL--HRSIVDHYNIPKTF--DSDDLIPPY---LDQYF----YSHIGHHLKNIEHPERMTL 492
Query: 619 FSRQLLLYFFLHQ 631
F L + FL Q
Sbjct: 493 FRMVFLDFRFLEQ 505
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 6e-12
Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 21/198 (10%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYPKRQ 897
++L ++ + + G +++G SG+GK+TL+ +L T G +EG + +++
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG-KEVDYTNEKE 75
Query: 898 ETFAR---ISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
+ R + G+ Q I P LT LE+++ +P + ++ E L+
Sbjct: 76 LSLLRNRKL-GFVFQFHYLI--PELTALENVI------VPMLKMGKPKKEAKERGEYLLS 126
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
L L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 ELGLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFL 184
Query: 1013 NIVNTGRTIVCTIHQPSI 1030
I G +IV H+ +
Sbjct: 185 KINEGGTSIVMVTHEREL 202
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 7e-12
Identities = 36/164 (21%), Positives = 67/164 (40%), Gaps = 28/164 (17%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
LL + + G +G GK+TLM +A + G P ++E R
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGF----------PTQEE--CR 496
Query: 903 ISGYCEQNDIHSPG-LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Y E + + +VL+ + S + + + F +E++ + +++LSG
Sbjct: 497 T-VYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAM-PISALSG--- 551
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
G + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 552 G----------WKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 52.3 bits (125), Expect = 1e-06
Identities = 48/317 (15%), Positives = 98/317 (30%), Gaps = 67/317 (21%)
Query: 45 KNVVGDVKEVDVSELAVQEQRLVLDRLVNAVEDDPERFFDRMRKRCEAVDLELPKIEVRF 104
+ V E+ E ++V++ + D + + + +
Sbjct: 344 STTLQVVNELLKDETVAPRFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEK 403
Query: 105 Q-NLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRL 163
+ ++ F +P PNF E + +L+ ++ +R
Sbjct: 404 KAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARR 463
Query: 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR--TSAYVSQQ-DWQ 220
+ GP GK+TL+ A+A QV G F + YV D
Sbjct: 464 YGICGPNGCGKSTLMRAIANG-----QVDG-----------FPTQEECRTVYVEHDIDGT 507
Query: 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI-KPDEDLDIFMKSFALGGQKTS 279
++ +V + + + + T+ A ++K+ DE + + + +
Sbjct: 508 HSDTSVLDFVF----------ESGVGTKEAIKDKLIEFGFTDEMIAMPISAL-------- 549
Query: 280 LVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 339
SGG K +L ++ A +L +DE +N LD+
Sbjct: 550 ----------------------------SGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Query: 340 STTYQIIKYLKHSTRAL 356
++ YL
Sbjct: 582 VNVAWLVNYLNTCGITS 598
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 1e-06
Identities = 50/312 (16%), Positives = 90/312 (28%), Gaps = 89/312 (28%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL---------GHHLQVSGKITYNGH 200
+ D++ S ++GP +GK+TL+ L G L + +++ H
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHENCRIA---YIKQH 744
Query: 201 GFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM------------ITE 248
F W+ RET+D A + M I
Sbjct: 745 AFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAG 804
Query: 249 LARREKIAGIKPDEDLDI---------------------------FMKSFA--------- 272
+ R K E + ++S +
Sbjct: 805 IHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMK 864
Query: 273 ---LGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
GQ L + I + + +V ++G+SGGQK +L ++
Sbjct: 865 EALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIV 924
Query: 330 MDEISNGLDSSTTYQIIKYLK----------HSTRALDGTTVISLLQPAPEAYELFDDVI 379
+DE +N LD + + K LK HS T ++V
Sbjct: 925 LDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLT---------------EEVW 969
Query: 380 LLSEGQIV-YQG 390
+ +G++
Sbjct: 970 AVKDGRMTPSGH 981
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 65/301 (21%), Positives = 105/301 (34%), Gaps = 94/301 (31%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
RS L+ ++ I L ++G GK++LL AL + +V G + G
Sbjct: 14 ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG---- 66
Query: 204 EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP--- 260
+ AYV QQ W + ++RE + F G + + + I+
Sbjct: 67 ------SVAYVPQQAW-IQNDSLRENILF-------GCQLEE----PYYRSV--IQACAL 106
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTG 318
DL+I G + T +G+ KG+ SGGQK+R
Sbjct: 107 LPDLEILP-----SGDR-------------------TEIGE---KGVNLSGGQKQR---- 135
Query: 319 ELLVGPAR--------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL----LQ 366
V AR LF D +S +D+ I + + L T I L +
Sbjct: 136 ---VSLARAVYSNADIYLFDDPLS-AVDAHVGKHIFENVIGPKGMLKNKTRI-LVTHSMS 190
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTSKKDQE 426
P+ D +I++S G+I G +L + A+FL+ S
Sbjct: 191 YLPQV----DVIIVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHH 236
Query: 427 Q 427
Sbjct: 237 H 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 5e-08
Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 45/215 (20%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L +T + G L A+VG G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
++ Y Q I + ++ E++LF + + + V++ L+ L L
Sbjct: 68 VA-YVPQQAWIQN--DSLRENILFG----------CQLEEPYYRSVIQACALLPDLEILP 114
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
IG G+N LS Q++R+++A + +N I D+P S +DA + V I
Sbjct: 115 SGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV--I 171
Query: 1015 VNTG----RTIVCTIHQPSIDIFESFDELLFMKRG 1045
G +T + H + D ++ M G
Sbjct: 172 GPKGMLKNKTRILVTHS--MSYLPQVDVIIVMSGG 204
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 64.8 bits (159), Expect = 2e-11
Identities = 54/211 (25%), Positives = 85/211 (40%), Gaps = 50/211 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
D +L N+ + + G + +VG SG+GK+TL G+ + I
Sbjct: 19 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLID 69
Query: 892 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G+ R G Q +++L + + I L VE+V+
Sbjct: 70 GHDLALADPNWLRRQVGVVLQ-----------DNVLLNRSII--DNISLANPGMSVEKVI 116
Query: 949 ELVELTSLSGA-------------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
+L +GA ++G G LS QR+R+ IA LV NP I+ DE
Sbjct: 117 YAAKL---AGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARALVNNPKILIFDEA 172
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
TS LD + ++MR + I GRT++ H
Sbjct: 173 TSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 4e-11
Identities = 55/207 (26%), Positives = 98/207 (47%), Gaps = 28/207 (13%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG--IIEGDIYISGYP 894
E+ + L NV + G +++G SG+GK+T+++++ + T G I+ I +
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDN-IKTNDLD 73
Query: 895 KRQETFAR---ISGYCEQ--NDIHSPGLTVLES----LLFSAWLRLPSEIELETQRAFVE 945
+ T R I G+ Q N I P LT LE+ L+F + E +R +
Sbjct: 74 DDELTKIRRDKI-GFVFQQFNLI--PLLTALENVELPLIFKYRGAMSGE-----ERR--K 123
Query: 946 EVMELVELTSLSGALIG-LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
+E +++ L P N LS Q++R+ IA L NP I+ D+PT LD++
Sbjct: 124 RALECLKMAELEERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTG 181
Query: 1005 AIVMRTVRNI-VNTGRTIVCTIHQPSI 1030
+M+ ++ + G+T+V H ++
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-10
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 48/229 (20%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
D + L +V+ PG ALVG SGAGK+T++ D+ +G I I
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC---------IRID 114
Query: 892 GYPKRQETFA---RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVM 948
G Q T A G Q +++LF+ + I A +EV
Sbjct: 115 GQDISQVTQASLRSHIGVVPQ-----------DTVLFNDTIA--DNIRYGRVTAGNDEVE 161
Query: 949 ELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTS 997
+ + A++ P G T+ +++R+ IA ++ P I+ +DE TS
Sbjct: 162 AAAQAAGIHDAIMAFP--EGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATS 219
Query: 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
LD + ++ + RT + H+ S + + D++L +K G
Sbjct: 220 ALDTSNERAIQASLAKVC-ANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
T VG+ LK +SGG+K+R+ ++ ++ +DE ++ LD+S I L
Sbjct: 181 RTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA- 238
Query: 356 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 390
+ TT++ S + A D ++++ +G IV +G
Sbjct: 239 -NRTTIVVAHRLSTVVNA-------DQILVIKDGCIVERG 270
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-10
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 88/259 (33%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 69
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
++ SQ W + T++E + F G YD R + IK +ED+
Sbjct: 70 RISFCSQFSW-IMPGTIKENIIF-------GVSYDE----YRYRSV--IKACQLEEDISK 115
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
F ++G+ GI SGGQ+ R +
Sbjct: 116 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 141
Query: 325 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 371
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 142 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 196
Query: 372 YELFDDVILLSEGQIVYQG 390
D +++L EG + G
Sbjct: 197 ----DKILILHEGSSYFYG 211
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 4e-07
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 39/211 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
IS +C Q I T+ E+++F + V++ L E ++ +
Sbjct: 71 IS-FCSQFSWIMP--GTIKENIIFG----------VSYDEYRYRSVIKACQLEEDISKFA 117
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 118 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 176
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ +T + + ++ + D++L + G
Sbjct: 177 LMANKTRILVTSK--MEHLKKADKILILHEG 205
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 1e-10
Identities = 40/202 (19%), Positives = 74/202 (36%), Gaps = 47/202 (23%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE--GDIYISGYPKRQETFAR 902
L N++ + PG L+G +G+GK+TL+ ++ G+I I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLR-----LLNTEGEIQIDGV--------- 82
Query: 903 ISGYCEQNDIHSPGLTVL---------ESLLFSAWLRL---PSEIELETQRAFVEEVMEL 950
S L + +FS R P+ + + + +V +
Sbjct: 83 --------SWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQE---IWKVADE 131
Query: 951 VEL----TSLSGALIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
V L G L + G LS ++ + +A +++ I+ +DEP++ LD
Sbjct: 132 VGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191
Query: 1005 AIVMRTVRNIVNTGRTIVCTIH 1026
I+ RT++ V
Sbjct: 192 QIIRRTLKQ--AFADCTVILCE 211
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 1e-10
Identities = 56/260 (21%), Positives = 93/260 (35%), Gaps = 89/260 (34%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L D++ I +L + G +GKT+LL+ + G L GKI ++G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG---------- 99
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP---DEDLDI 266
++ SQ W + T++E + +G YD R + IK +ED+
Sbjct: 100 RISFCSQNSW-IMPGTIKENI--------IGVSYDE----YRYRSV--IKACQLEEDISK 144
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLVGP 324
F ++G+ GI SGGQ+ R +
Sbjct: 145 FA-----EKDN-------------------IVLGE---GGITLSGGQRAR-------ISL 170
Query: 325 AR--------VLFMDEISNGLDSSTTYQIIK-----YLKHSTRALDGTTVISLLQPAPEA 371
AR L LD T +I + + + TR L V S ++ +A
Sbjct: 171 ARAVYKDADLYLLDSPFG-YLDVLTEKEIFESCVCKLMANKTRIL----VTSKMEHLKKA 225
Query: 372 YELFDDVILLSEGQIVYQGP 391
D +++L EG + G
Sbjct: 226 ----DKILILHEGSSYFYGT 241
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 46/211 (21%), Positives = 88/211 (41%), Gaps = 40/211 (18%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFAR 902
L ++ G L A+ G +GAGKT+L+ ++ G + EG I SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 903 ISGYCEQND-IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVME---LVE-LTSLS 957
IS +C QN I T+ E+++ ++ V++ L E ++ +
Sbjct: 101 IS-FCSQNSWIMP--GTIKENIIGVSY-----------DEYRYRSVIKACQLEEDISKFA 146
Query: 958 GA---LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
++G GI LS QR R+++A + + + +D P LD + +
Sbjct: 147 EKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCK 205
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ +T + + ++ + D++L + G
Sbjct: 206 LMANKTRILVTSK--MEHLKKADKILILHEG 234
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 7e-10
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 23/170 (13%)
Query: 844 LLVNVT---GAFRPGV-------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY 893
L V G FR V L+G +GAGK+ ++++AG G++ ++G
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGA 60
Query: 894 P-KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE 952
R G+ Q+ P L+V ++ + LR +E + + V E+ E +
Sbjct: 61 DITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG--LRNVERVERDRR---VREMAEKLG 115
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
+ L LS +R+R+ +A LV P ++ +DEP S +D +
Sbjct: 116 IAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 43/197 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+ L ++ G ALVG +G+GK+T+ D EGDI I G
Sbjct: 34 RTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----------EGDIKIGGKNV 83
Query: 896 RQETFARISGYCEQNDIHSP-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
+ +N I S G+ +++LF+ ++ I A EEV++ +
Sbjct: 84 NKYN---------RNSIRSIIGIVPQDTILFNETIK--YNILYGKLDATDEEVIKATKSA 132
Query: 955 SLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003
L + LP T +R+R+ IA L+ +P IV DE TS LD++
Sbjct: 133 QLYDFIEALP--KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKT 190
Query: 1004 AAIVMRTVRNIVNTGRT 1020
+ + V ++ RT
Sbjct: 191 EYLFQKAVEDLRK-NRT 206
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 29/100 (29%), Positives = 56/100 (56%), Gaps = 15/100 (15%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++ +K +SGG+++R+ L+ +++ DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK- 203
Query: 356 LDGTTVI-----SLLQPAPEAYELFDDVILLSEGQIVYQG 390
+ T +I S + A + +ILL++G+IV +G
Sbjct: 204 -NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKG 235
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.4 bits (145), Expect = 1e-09
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 48/192 (25%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
+D Q+L +++ +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 892 GYPKRQETFA----RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIEL-ETQRAFVEE 946
G P + +I G+ Q +S + + +R + E+
Sbjct: 63 GQPIDNISLENWRSQI-GFVSQ-----------DSAIMAGTIR--ENLTYGLEGDYTDED 108
Query: 947 VMELVELTSLSGALIGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEP 995
+ ++++L + +P + L+TE QR+RL IA + NP I+ +DE
Sbjct: 109 LWQVLDLAFARSFVENMP--DQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEA 166
Query: 996 TSGLDARAAAIV 1007
T+ LD+ + ++V
Sbjct: 167 TASLDSESESMV 178
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 53/191 (27%), Positives = 83/191 (43%), Gaps = 55/191 (28%)
Query: 845 LVNVTGAFRPGVLTA---------------LVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889
+ NV+ F+ G + A ++G SGAGKTT M ++AG G++Y
Sbjct: 6 VKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELY 63
Query: 890 ISGY-----------PKRQET---FARISGYCEQNDIHSPGLTVLESLLFSAWLRL---- 931
P+ ++ F Q P LT E++ F L
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVF--------QTWALYPNLTAFENIAFP--LTNMKMS 113
Query: 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991
EI +R VEEV +++++ + L P LS Q++R+ +A LV +PS++
Sbjct: 114 KEEIR---KR--VEEVAKILDIHHV---LNHFPR--ELSGAQQQRVALARALVKDPSLLL 163
Query: 992 MDEPTSGLDAR 1002
+DEP S LDAR
Sbjct: 164 LDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 64/305 (20%), Positives = 116/305 (38%), Gaps = 89/305 (29%)
Query: 130 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG----- 53
Query: 189 LQV--SGKITYNG----HGFKEFVPP--RTSAYVSQQDWQVA---EMTVRETLDFAGQCQ 237
L V +G++ ++ K VPP R V Q W A +T E + F
Sbjct: 54 LDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQ-TW--ALYPNLTAFENIAFP---- 106
Query: 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297
L + +E I + VE + KIL +
Sbjct: 107 -----------L----TNMKMSKEE---IRKR------------VEEVAKILDIH---HV 133
Query: 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE-ISNGLDSSTTYQIIKYLKHSTRA- 355
L + + +SG Q++R+ LV +L +DE SN LD+ ++ S RA
Sbjct: 134 L--NHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN-LDAR--------MRDSARAL 182
Query: 356 -------LDGTTVISLLQPAPEAYELFDDVILLSEGQI--------VYQGPR-VSVLDFF 399
L G T++ + + + + D V +L +G++ +Y P + V
Sbjct: 183 VKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
Query: 400 ASMGF 404
+
Sbjct: 242 GEINE 246
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 5e-09
Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 46/208 (22%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 895
Q+L + + G ALVG SG GK+T + +++ G + I G
Sbjct: 404 QILKGLNLKVKSGQTVALVGNSGCGKSTTV---------QLMQRLYDPLDGMVSIDGQDI 454
Query: 896 RQETF----ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMEL 950
R I G Q E +LF+ + E I + ++E+ +
Sbjct: 455 RTINVRYLREII-GVVSQ-----------EPVLFATTIA---ENIRYGREDVTMDEIEKA 499
Query: 951 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V+ + ++ LP G G LS Q++R+ IA LV NP I+ +DE TS LD
Sbjct: 500 VKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+ A+V + GRT + H+ S
Sbjct: 560 ESEAVVQAALDKAR-EGRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-06
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 44/205 (21%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYISGYPK 895
+L ++ + G ALVG SG GK+T++ D +AG +++ G
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGS---------VFLDGKEI 1097
Query: 896 RQETFARISGYCEQNDIHS--PGL---TVLESLLFSAWLRLPSEIELETQRAFVEEVMEL 950
+Q + Q I S P L ++ E++ + R+ S EE++
Sbjct: 1098 KQ---LNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSY----------EEIVRA 1144
Query: 951 VELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ ++ + LP G G LS Q++R+ IA LV P I+ +DE TS LD
Sbjct: 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDT 1204
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIH 1026
+ +V + GRT + H
Sbjct: 1205 ESEKVVQEALDK-AREGRTCIVIAH 1228
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 9e-09
Identities = 39/151 (25%), Positives = 73/151 (48%), Gaps = 11/151 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETFARISGYCEQND 911
R G + L+G SG+GKTT++ ++AG + +GD++I G R G QN
Sbjct: 39 REGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNY 96
Query: 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST 971
+TV +++ F + + E++ + V E++ + L S + + LS
Sbjct: 97 ALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP-----HELSG 148
Query: 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
Q++R+ +A L P ++ DEP + +D +
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 8e-08
Identities = 45/172 (26%), Positives = 71/172 (41%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG+GK+TL+ +AG G IY + ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEK--------------DVTELPPKDRNV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV +++ F L L EI+ ++ V EV +++ + L L
Sbjct: 78 GLVFQNWALYPHMTVYKNIAFP--LELRKAPREEID---KK--VREVAKMLHIDKL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 128 NRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-07
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQ 909
PG + ++G SG GKTTL+ LAG + G I I R GY Q
Sbjct: 28 DPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQ 87
Query: 910 NDIHS--PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
P LTV ++ + + +R +E ++EL ++ L+G +
Sbjct: 88 E--GVLFPHLTVYRNIAYGLGNGKGRTAQ---ERQRIEAMLELTGISELAGRYP-----H 137
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LS Q++R +A L +P ++ +DEP S LD +
Sbjct: 138 ELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 8e-04
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 130 MTEAL-LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
MT AL + L N +L+D+S + P + ++G GKTTLL LA G
Sbjct: 1 MTAALHIGHLSKSFQNT---PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLA---GFE 54
Query: 189 LQVSGKITYNGH---GFKEFVPP 208
SG+I+ +G +P
Sbjct: 55 QPDSGEISLSGKTIFSKNTNLPV 77
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 49/172 (28%), Positives = 72/172 (41%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG GKTT + ++AG + EG IY + +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGD--------------RDVTYLPPKDRNI 85
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV E++ F L++ EI+ +R V EL+++ L L
Sbjct: 86 SMVFQSYAVWPHMTVYENIAFP--LKIKKFPKDEID---KR--VRWAAELLQIEEL---L 135
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 136 NRYPA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 53/167 (31%), Positives = 73/167 (43%), Gaps = 36/167 (21%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCE----------Q 909
L+G SG GKTT + ++AG + G IYI + + Q
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGD---KLVADPEKGIFVPPKDRDIAMVFQ 88
Query: 910 NDIHSPGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+ P +TV +++ F L+L EI+ QR V EV EL+ LT L L P
Sbjct: 89 SYALYPHMTVYDNIAFP--LKLRKVPRQEID---QR--VREVAELLGLTEL---LNRKPR 138
Query: 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 139 --ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 5e-07
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 48/204 (23%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLM-------DVLAGRKTGGIIEGDIYIS 891
++ +L ++ + G A VG+SG GK+TL+ DV +G+ I I
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ---------ILID 401
Query: 892 GYPKRQETFA----RISGYCEQNDIHSPGLTVL-ESLLFSAWLRLPSEIELETQRAFVEE 946
G+ + +I V +++LFS ++ I L A EE
Sbjct: 402 GHNIKDFLTGSLRNQIG-------------LVQQDNILFSDTVK--ENILLGRPTATDEE 446
Query: 947 VMELVELTSLSGALIGLP----------GINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996
V+E ++ + ++ LP G+ LS Q++RL+IA + NP I+ +DE T
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 997 SGLDARAAAIVMRTVRNIVNTGRT 1020
S LD + +I+ + + RT
Sbjct: 506 SALDLESESIIQEALDVLSK-DRT 528
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 50/172 (29%), Positives = 69/172 (40%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
L+G SG GKTT + +LAG G+IY NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDV--------------LVNDIPPKYREV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P +TV E++ F LR E+E +R V E+ + + +L L
Sbjct: 78 GMVFQNYALYPHMTVFENIAFP--LRARRISKDEVE---KR--VVEIARKLLIDNL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 128 DRKPT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 50.1 bits (121), Expect = 1e-06
Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 44/201 (21%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKR 896
+ + + G + L+G +GAGKTT + +AG R G I I+ P
Sbjct: 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH 76
Query: 897 QETFARISGYCEQNDIHSP-------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVME 949
I+ P LTV E+L+ A+ R + ++ +E
Sbjct: 77 VINRMGIA--------LVPEGRRIFPELTVYENLMMGAYNR--------KDKEGIKRDLE 120
Query: 950 LV-EL--------TSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+ L L G L G G EQ + L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGTLSG--G------EQ-QMLAIGRALMSRPKLLMMDEPSLGLA 171
Query: 1001 ARAAAIVMRTVRNIVNTGRTI 1021
+ V ++ I G TI
Sbjct: 172 PILVSEVFEVIQKINQEGTTI 192
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 2e-04
Identities = 59/282 (20%), Positives = 103/282 (36%), Gaps = 81/282 (28%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 188 HLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE-------MTVRETLDFAGQC---- 236
GKI +NG ++ V E +TV E L
Sbjct: 59 Q---KGKIIFNG---QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK 112
Query: 237 QGVGSKYDMITEL-----ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291
+G+ + I L R +++ G
Sbjct: 113 EGIKRDLEWIFSLFPRLKERLKQLGG---------------------------------- 138
Query: 292 DTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351
TL SGG+++ L G L+ ++L MDE S GL ++ + ++
Sbjct: 139 -----TL---------SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184
Query: 352 STRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVYQGP 391
+ +GTT+ LL Q A A ++ +L GQIV +G
Sbjct: 185 INQ--EGTTI--LLVEQNALGALKVAHYGYVLETGQIVLEGK 222
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 39/168 (23%), Positives = 65/168 (38%), Gaps = 60/168 (35%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-------KRQETFARISGYCEQND 911
++G +GAGKT ++++AG G I + G K D
Sbjct: 30 VILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKH--------------D 73
Query: 912 IHS--------PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTS------- 955
I P + V ++L F +R+ + +R V + +++
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDP---KR--VLDTARDLKIEHLLDRNPL 126
Query: 956 -LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LSG G +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 127 TLSG---------G----EQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 3e-06
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 53/210 (25%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-------GDIYISGYPK 895
Q+L +T PG +TALVG +G+GK+T+ +++ G + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVA---------ALLQNLYQPTGGKVLLDGEPL 83
Query: 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLR------LPSEIELETQRAFVEE 946
Q Q E LLF R L +EE
Sbjct: 84 VQYDHHYLHTQVAAVGQ-----------EPLLFGRSFRENIAYGLTRT-------PTMEE 125
Query: 947 VMELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTS 997
+ + + + G P G G LS QR+ + +A L+ P ++ +D TS
Sbjct: 126 ITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATS 185
Query: 998 GLDARAAAIVMRTV-RNIVNTGRTIVCTIH 1026
LDA V R + + RT++
Sbjct: 186 ALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 59/261 (22%), Positives = 100/261 (38%), Gaps = 66/261 (25%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204
+ +L L+ + P ++T L+GP SGK+T+ AL L + GK+ +G +
Sbjct: 29 HPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNL--YQPTGGKVLLDGEPLVQ 85
Query: 205 FVPP--RTS-AYVSQQDWQVAE-----MTVRETLDFAGQCQGVGSKYDMITELARREKIA 256
+ T A V Q E + RE + + G + + IT +A +
Sbjct: 86 YDHHYLHTQVAAVGQ------EPLLFGRSFRENIAY-GLTRTP--TMEEITAVA---MES 133
Query: 257 GIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKR 314
G F+ F G Y DT VG+ G SGGQ++
Sbjct: 134 GA------HDFISGFPQG---------Y-----------DTEVGE---TGNQLSGGQRQA 164
Query: 315 LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI-----SLLQPAP 369
+ L+ R+L +D ++ LD+ ++ + L S T ++ SL + A
Sbjct: 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERA- 223
Query: 370 EAYELFDDVILLSEGQIVYQG 390
++ L EG + QG
Sbjct: 224 ------HHILFLKEGSVCEQG 238
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-06
Identities = 47/213 (22%), Positives = 79/213 (37%), Gaps = 54/213 (25%)
Query: 813 QPLSMAFGNINYFVDVPV--ELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTT 870
G ++ DV + K++ L V+ + G ALVG SG+GK+T
Sbjct: 333 YEAERVNGEVD-VKDVTFTYQGKEKPALSH-----VSFS--IPQGKTVALVGRSGSGKST 384
Query: 871 LMDVLA----GRKTGGIIEGDIYISGYPKRQETFA---RISGYCEQNDIHSPGLTVLESL 923
+ ++ + G I + G+ R R Q
Sbjct: 385 IANLFTRFYD------VDSGSICLDGHDVRDYKLTNLRRHFALVSQ-----------NVH 427
Query: 924 LFS-------AWLRLPS----EIELETQRAFVEE-VMELVELTSLSG--ALIGLPGINGL 969
LF+ A+ +IE ++A E + + + G +IG G + L
Sbjct: 428 LFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----GLDTVIGENGTS-L 481
Query: 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
S QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 966 INGLSTEQRKRLTIAVEL------VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+ LS +R L +A L S++ +DEPT LD ++ + +
Sbjct: 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP 305
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGG 1046
++ H ++ ++ D ++ +
Sbjct: 306 QVILVSHDE--ELKDAADHVIRISLEN 330
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 46/181 (25%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA----GRKTGGIIEGDIYISGYPKRQETF 900
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD------IDEGHILMDGHDLREYTL 412
Query: 901 A----RISGYCEQNDIHSPGLTVL-ESLLFS---------AWLRLPSEIELET--QRAFV 944
A +++ V LF+ A S ++E + A+
Sbjct: 413 ASLRNQVA-------------LVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYA 459
Query: 945 EE-VMELVELTSLSG--ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
+ + ++ G +IG G+ LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 460 MDFINKMDN-----GLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 1002 R 1002
Sbjct: 514 E 514
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 6e-06
Identities = 35/136 (25%), Positives = 56/136 (41%), Gaps = 33/136 (24%)
Query: 308 SGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
SGGQK+R V AR VL D+ ++ LD +TT I++ LK R L T
Sbjct: 165 SGGQKQR-------VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTI 217
Query: 361 VI-----SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
++ +++ + D V ++S G+++ Q V + F+ PK F
Sbjct: 218 LLITHEMDVVK------RICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKF 263
Query: 416 LQEVTSKKDQEQYWSN 431
+Q E Y
Sbjct: 264 IQSTLHLDIPEDYQER 279
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 37/226 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFA 901
L NV+ G + ++G SGAGK+TL+ + R T G ++ ++ + + T A
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103
Query: 902 RIS-GYCEQ--NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT---- 954
R G Q N + S TV ++ L L + + V E++ LV L
Sbjct: 104 RRQIGMIFQHFNLLSS--RTVFGNVALP--LEL-DNTPKDEVKRRVTELLSLVGLGDKHD 158
Query: 955 ----SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+LSG Q++R+ IA L +NP ++ D+ TS LD ++
Sbjct: 159 SYPSNLSGG-------------QKQRVAIARALASNPKVLLCDQATSALDPATTRSILEL 205
Query: 1011 VRNIVN--TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054
+++I N G TI+ H+ + + D + + GELI +
Sbjct: 206 LKDI-NRRLGLTILLITHEMDV-VKRICDCVAVIS-NGELIEQDTV 248
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 41/222 (18%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
L++L + R G + ++G SG+GK+T + L + EG+I I G + +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAK--- 91
Query: 902 RISGYCEQNDIHS---------------PGLTVLESLLFS-AWLRLPSEIELETQRAFVE 945
+++ P +TVL ++ + +R + E
Sbjct: 92 -------DTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE------A 138
Query: 946 EVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005
+ MEL++ L P LS Q +R+ IA L P I+ DEPTS LD
Sbjct: 139 KAMELLDKVGLKDKAHAYPD--SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVG 196
Query: 1006 IVMRTVRNIVNTGRTIVCTIHQPSIDIF--ESFDELLFMKRG 1045
V+ ++ + N G T+V H+ F E D +LFM G
Sbjct: 197 EVLSVMKQLANEGMTMVVVTHEMG---FAREVGDRVLFMDGG 235
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 2e-04
Identities = 56/172 (32%), Positives = 76/172 (44%), Gaps = 52/172 (30%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----- 914
VG SG GK+TL+ ++AG +T I GD++I R+ ND
Sbjct: 34 FVGPSGCGKSTLLRMIAGLET--ITSGDLFIGE--------KRM------NDTPPAERGV 77
Query: 915 ----------PGLTVLESLLFSAWLRL----PSEIELETQRAFVEEVMELVELTSLSGAL 960
P L+V E++ F L+L I QR V +V E+++L L L
Sbjct: 78 GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVIN---QR--VNQVAEVLQLAHL---L 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA--RAAAIVMRT 1010
P LS QR+R+ I LVA PS+ +DEP S LDA R MR
Sbjct: 128 DRKPK--ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ---MRI 174
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 50/192 (26%), Positives = 76/192 (39%), Gaps = 51/192 (26%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG-------------------- 892
G + AL+G +GAGK+TL +LAG + G+I + G
Sbjct: 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAF 86
Query: 893 -YPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
YP + PG+T+ L + +L E+ + V++ +EL+
Sbjct: 87 QYP-----------------VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL 129
Query: 952 ELTS--LSGALIGLPGIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVM 1008
+ LS L N G S ++KR I LV P+ +DE SGLD A +
Sbjct: 130 DWDESYLSRYL------NEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDA----L 179
Query: 1009 RTVRNIVNTGRT 1020
+ V VN R
Sbjct: 180 KVVARGVNAMRG 191
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 39/227 (17%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP-KRQETF 900
++L V+ R G + +++G SG+GK+T + + + EG I ++G
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDK 76
Query: 901 ARISGYCEQNDIHS---------------PGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
++N + +TVLE+++ + P ++ ++ E
Sbjct: 77 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARE 131
Query: 946 EVMELVELTSLSG-ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004
++ + + A P LS Q++R++IA L P ++ DEPTS LD
Sbjct: 132 RALKYLAKVGIDERAQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1005 AIVMRTVRNIVNTGRTIVCTIHQPSIDIFE-SF-----DELLFMKRG 1045
V+R ++ + G+T+V H E F ++F+ +G
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTH-------EMGFARHVSSHVIFLHQG 229
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1419 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-27 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 8e-18 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-27 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-20 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-26 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 3e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 5e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-18 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-24 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-17 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-23 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-23 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-14 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-19 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-15 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 3e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-15 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-21 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-19 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 4e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-20 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 3e-16 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-14 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-15 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 2e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.004 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.003 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.004 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 9e-05 | |
| d1cr2a_ | 277 | c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), | 1e-04 | |
| d1szpa2 | 251 | c.37.1.11 (A:145-395) DNA repair protein Rad51, ca | 2e-04 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.001 | |
| d2i1qa2 | 258 | c.37.1.11 (A:65-322) DNA repair protein Rad51, cat | 0.001 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.002 | |
| d1tf7a1 | 242 | c.37.1.11 (A:14-255) Circadian clock protein KaiC | 0.002 | |
| d1tf7a2 | 242 | c.37.1.11 (A:256-497) Circadian clock protein KaiC | 0.002 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 109 bits (275), Expect = 2e-27
Identities = 54/219 (24%), Positives = 103/219 (47%), Gaps = 12/219 (5%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIY 889
K + E+ + L NV + G +++G SG+GK+T+++++ + T G + +I
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 890 ISGYPKRQETFARIS--GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
+ + T R G+ Q P LT LE++ + + E +R E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+++ EL P N LS Q++R+ IA L NP I+ D+PT LD++ +
Sbjct: 129 LKMAEL--EERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKI 184
Query: 1008 MRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
M+ ++ + G+T+V H I++ + ++++K G
Sbjct: 185 MQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 81.8 bits (202), Expect = 8e-18
Identities = 44/261 (16%), Positives = 94/261 (36%), Gaps = 49/261 (18%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+ Y+ + L +++ I+ ++GP SGK+T+L + G++ +
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYID 65
Query: 199 GH-----GFKEFVPPRTS--AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELAR 251
E R +V QQ + +T E ++ + G+ ++ R
Sbjct: 66 NIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGA----MSGEER 121
Query: 252 REKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKGISGG 310
R++ +K+ L + A+ +SGG
Sbjct: 122 RKR---------------------------ALECLKMAELEERFANHKPNQ-----LSGG 149
Query: 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370
Q++R+ L ++ D+ + LDS T +I++ LK G TV+ ++
Sbjct: 150 QQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEED-GKTVV-VVTHDIN 207
Query: 371 AYELFDDVILLSEGQIVYQGP 391
+ +I L +G++ +
Sbjct: 208 VARFGERIIYLKDGEVEREEK 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 110 bits (276), Expect = 2e-27
Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 13/221 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ L V+ + G +T ++G +G+GK+TL++V+ G + G + + + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE-------LETQRAFVEEVMELVE 952
+ Q +TVLE+LL S + + + VE+ +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012
LS G LS Q K + I L+ NP ++ MDEP +G+ A + V
Sbjct: 137 FLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1013 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G T + H+ + D L M G++I G
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGR 233
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.8 bits (225), Expect = 1e-20
Identities = 49/249 (19%), Positives = 88/249 (35%), Gaps = 35/249 (14%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
+ LD +S + +TL++GP SGK+TL+ + G L G++ +
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 207 PP----RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262
P Q + EMTV E L C G + + ++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
I++ L L D G+ +SGGQ K + G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
+++ MDE G+ + I ++ G T + + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMF 224
Query: 383 EGQIVYQGP 391
GQI+ +G
Sbjct: 225 NGQIIAEGR 233
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 107 bits (268), Expect = 2e-26
Identities = 46/214 (21%), Positives = 78/214 (36%), Gaps = 12/214 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+ + + G + L+G +GAGKTT + +AG R G I +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ P LTV E+L+ A+ R E +R L
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE---GIKRDLEWIFSLFPRLKERLKQ 135
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
L G LS +++ L I L++ P ++ MDEP+ GL + V ++ I G
Sbjct: 136 LGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGT 190
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
TI+ + ++ G+++ G
Sbjct: 191 TILLVEQNAL-GALKVAHYGYVLET-GQIVLEGK 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.3 bits (203), Expect = 7e-18
Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 47/271 (17%)
Query: 130 MTEALL--RQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL-G 186
+++ +L + L +Y G + + + + ++ L+G +GKTT L A+AG +
Sbjct: 2 VSDIVLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 187 HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMI 246
++ + + A V + E+TV E L +
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKE----- 113
Query: 247 TELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306
+ + L L G
Sbjct: 114 ---GIKRDLE--------------------------WIFSLFPRLKERLKQLGGT----- 139
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGG+++ L G L+ ++L MDE S GL ++ + ++ + +GTT++ + Q
Sbjct: 140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ--EGTTILLVEQ 197
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
A A ++ +L GQIV +G +LD
Sbjct: 198 NALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 106 bits (267), Expect = 3e-26
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 14/214 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETF 900
+ + + G L+G SG GKTT + ++AG + EG IY
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPK 76
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
R Q+ P +TV E++ F ++ + + V EL+++ L
Sbjct: 77 DRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRY 133
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGR 1019
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ +
Sbjct: 134 PA-----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKV 188
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T + H + D + M R G+L+ G
Sbjct: 189 TTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 99.1 bits (247), Expect = 1e-23
Identities = 63/291 (21%), Positives = 104/291 (35%), Gaps = 55/291 (18%)
Query: 127 IFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186
+ M E L L GN T ++ L+ I+ +LLGP GKTT L +AG
Sbjct: 1 VIKMVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 57
Query: 187 HHLQVSGKITYNGHGFKEFVPP-RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDM 245
G+I + P R + V Q MTV E + F + +
Sbjct: 58 PT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKD--- 111
Query: 246 ITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305
E+ +R V + ++L ++ +
Sbjct: 112 --EIDKR-----------------------------VRWAAELLQIEELLNRYPAQ---- 136
Query: 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL 365
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT+
Sbjct: 137 -LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 195
Query: 366 QPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + +++ GQ++ G V + P VA F+
Sbjct: 196 DQV-EAMTMGDRIAVMNRGQLLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (262), Expect = 3e-25
Identities = 42/201 (20%), Positives = 81/201 (40%), Gaps = 19/201 (9%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP 964
+C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1025 IHQPSIDIFESFDELLFMKRG 1045
+ D++L + +G
Sbjct: 215 TSKME--HLRKADKILILHQG 233
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 83.8 bits (207), Expect = 5e-18
Identities = 44/242 (18%), Positives = 84/242 (34%), Gaps = 52/242 (21%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR 209
+L +++ I + + G SGKT+LL+ + G L G I ++G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSGR--------- 98
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
++ SQ W + T++E + F K ++ D
Sbjct: 99 -VSFCSQFSW-IMPGTIKENIIFGVSYDEY--------RYKSVVKACQLQQD-------- 140
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
I +T++G+ +SGGQ+ R++ + A +
Sbjct: 141 ------------------ITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYL 181
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 389
+D LD T Q+ + + + T I L+ E D +++L +G +
Sbjct: 182 LDSPFGYLDVFTEEQVFESCVC--KLMANKTRI-LVTSKMEHLRKADKILILHQGSSYFY 238
Query: 390 GP 391
G
Sbjct: 239 GT 240
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (252), Expect = 2e-24
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 14/216 (6%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
+ ++L ++ G + L+G +GAGKTT + +++ + + GI+ +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHE 72
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
++ Y + + +E L F A S E+ VE E+ L
Sbjct: 73 --VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEI---EEMVERATEIAGLGEKI 127
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+ S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G TI+ + H ++ D + + G ++ G
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 84.3 bits (208), Expect = 2e-18
Identities = 60/288 (20%), Positives = 99/288 (34%), Gaps = 57/288 (19%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
++ LR G + IL +S I + L+GP +GKTT L ++ + SG
Sbjct: 5 VKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGI 58
Query: 195 ITYNGHGFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
+T G E + +Y+ ++ M E L F S
Sbjct: 59 VTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-------EIE 111
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
E VE +I GL V S G
Sbjct: 112 EM---------------------------VERATEIAGLGEKIKDRVS-----TYSKGMV 139
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
++L L+ R+ +DE ++GLD ++ K LK +++ +G T++ E
Sbjct: 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNMLEVE 197
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
L D + L+ G IV G + K +N+ + +EV
Sbjct: 198 FLCDRIALIHNGTIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (253), Expect = 3e-24
Identities = 47/226 (20%), Positives = 89/226 (39%), Gaps = 22/226 (9%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQE 898
++L V+ R G + +++G SG+GK+T + + + + G II I+ +
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 899 TFARIS-----------GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
Q+ +TVLE+++ + R +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+ V + A P LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDER--AQGKYPV--HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+R ++ + G+T+V H+ ++F+ G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 78.7 bits (194), Expect = 2e-16
Identities = 52/299 (17%), Positives = 94/299 (31%), Gaps = 69/299 (23%)
Query: 135 LRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
+ L G +L +S R + ++G SGK+T L + G
Sbjct: 5 VIDLHKRYGGH---EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGA 58
Query: 195 ITYNGHGFKEFVPP----------------RTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238
I NG V Q + MTV E + A
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA----- 113
Query: 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298
++ G+ + + + +G+D A
Sbjct: 114 -------------PIQVLGLSKHDARER---------------ALKYLAKVGIDERAQGK 145
Query: 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDG 358
+ SGGQ++R++ L VL DE ++ LD ++++ ++ +G
Sbjct: 146 YPVHL----SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE--EG 199
Query: 359 TTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417
T++ + A + VI L +G+I +G V F P+ + FL+
Sbjct: 200 KTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 250
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (252), Expect = 3e-24
Identities = 51/208 (24%), Positives = 84/208 (40%), Gaps = 15/208 (7%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ET 899
L N+ G ALVG SG+GK+T+ ++ I EG I + G+ R+ +
Sbjct: 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLAS 86
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
QN +IE + A + M+ + +
Sbjct: 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE---EAARMAYAMDFIN--KMDNG 141
Query: 960 LIGLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
L + G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 142 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QK 200
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFMKRG 1045
RT + H+ S E DE++ ++ G
Sbjct: 201 NRTSLVIAHRLS--TIEQADEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 80.7 bits (199), Expect = 3e-17
Identities = 49/267 (18%), Positives = 101/267 (37%), Gaps = 47/267 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y G ++ L +++ I + L+G SGK+T+ + G I +GH
Sbjct: 23 YPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGH 77
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
+E+ R + Q+ + TV + +A ++ ++ ++A
Sbjct: 78 DLREYTLASLRNQVALVSQNVHLFNDTVANNIAYAR------TEEYSREQIEEAARMAYA 131
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
I +D DT++G E +SGGQ++R+
Sbjct: 132 MDF--------------------------INKMDNGLDTIIG-ENGVLLSGGQRQRIAIA 164
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
L+ + +L +DE ++ LD+ + I L T + ++ E D++
Sbjct: 165 RALLRDSPILILDEATSALDTESERAIQAALD---ELQKNRTSL-VIAHRLSTIEQADEI 220
Query: 379 ILLSEGQIVYQGPRVSVLD---FFASM 402
+++ +G IV +G +L +A +
Sbjct: 221 VVVEDGIIVERGTHSELLAQHGVYAQL 247
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 99.2 bits (247), Expect = 1e-23
Identities = 54/228 (23%), Positives = 91/228 (39%), Gaps = 19/228 (8%)
Query: 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG 892
K +Q L NV+ G + ++G SGAGK+TL+ + + EG + + G
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDG 66
Query: 893 Y------PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEE 946
R G Q+ TV ++ L + E+ + V E
Sbjct: 67 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV---KRRVTE 123
Query: 947 VMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006
++ LV L + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 124 LLSLVGLGDKHDSYPS-----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178
Query: 1007 VMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ +++I G TI+ H+ + + D + + GELI
Sbjct: 179 ILELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 89.9 bits (223), Expect = 2e-20
Identities = 51/283 (18%), Positives = 101/283 (35%), Gaps = 57/283 (20%)
Query: 139 RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198
+++ + L+++S + ++ ++G +GK+TL+ + G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL---LERPTEGSVLVD 65
Query: 199 GH-----GFKEFVPPRTSAYVSQQDW-QVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252
G E R + Q + ++ TV + + +
Sbjct: 66 GQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKD-------EVK 118
Query: 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQK 312
+ V ++ ++GL D+ + +SGGQK
Sbjct: 119 RR---------------------------VTELLSLVGLGDKHDSYPSN-----LSGGQK 146
Query: 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAY 372
+R+ L +VL DE ++ LD +TT I++ LK R L G T++ +
Sbjct: 147 QRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLTILLITHEMDVVK 205
Query: 373 ELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADF 415
+ D V ++S G+++ Q V FS PK F
Sbjct: 206 RICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKF 240
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 97.7 bits (243), Expect = 2e-23
Identities = 38/189 (20%), Positives = 79/189 (41%), Gaps = 16/189 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR 902
+L +T G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 903 ISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
+ + I ++V + L A L ++ + + + +E VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTI 1021
+ LS +R+ +A L+ N I +D+P +D + V++++ I+ G I
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1022 VCTIHQPSI 1030
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 71.1 bits (174), Expect = 2e-14
Identities = 34/215 (15%), Positives = 73/215 (33%), Gaps = 48/215 (22%)
Query: 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP 208
+L+ ++ I + GP GKTTLL ++ L G+I YNG +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--K 69
Query: 209 RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFM 268
++ ++ +++V + L GV + I + ++ +K
Sbjct: 70 GKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLK--------- 120
Query: 269 KSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVL 328
+ L +S G +R+ L+ A +
Sbjct: 121 ---------------------------------KKLGELSQGTIRRVQLASTLLVNAEIY 147
Query: 329 FMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+D+ +D + ++++K + + G +IS
Sbjct: 148 VLDDPVVAIDEDSKHKVLKSILEILKEK-GIVIIS 181
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 98.7 bits (246), Expect = 2e-23
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 11/217 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE 898
++ +L ++ + G A VG+SG GK+TL++++ + G I I G+ +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNIKDF 85
Query: 899 TFARISGYCE--QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
+ Q D TV E++L E+ + A + + L
Sbjct: 86 LTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIM--NLPQG 143
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016
+G G+ LS Q++RL+IA + NP I+ +DE TS LD + +I+ + + +
Sbjct: 144 YDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL-S 201
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
RT + H+ S D+++ ++ G ++ G
Sbjct: 202 KDRTTLIVAHRLS--TITHADKIVVIE-NGHIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 85.2 bits (211), Expect = 9e-19
Identities = 56/267 (20%), Positives = 98/267 (36%), Gaps = 48/267 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y N + IL D++ I +G GK+TL+ + SG+I +GH
Sbjct: 26 YNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGH 80
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
K+F+ R + QQD + TV+E + G E+ K+A
Sbjct: 81 NIKDFLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANA 133
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
I+ L DT VG E +SGGQK+RL+
Sbjct: 134 HDF--------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIA 166
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ + +L +DE ++ LD + I + L ++ T + ++ D +
Sbjct: 167 RIFLNNPPILILDEATSALDLESESIIQEALDVLSK---DRTTL-IVAHRLSTITHADKI 222
Query: 379 ILLSEGQIVYQGPRVSVLD---FFASM 402
+++ G IV G ++ + +
Sbjct: 223 VVIENGHIVETGTHRELIAKQGAYEHL 249
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 7e-23
Identities = 46/219 (21%), Positives = 83/219 (37%), Gaps = 28/219 (12%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---KRQETFA 901
L ++G R G + LVG +GAGK+TL+ +AG +G +G I +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Y Q V L + +E+ +V + L G
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELL--------NDVAGALALDDKLGRST 123
Query: 962 GLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
LS + +R+ +A ++ ++ +DEP + LD + + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G IV + H + +K GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 75.0 bits (184), Expect = 2e-15
Identities = 50/264 (18%), Positives = 87/264 (32%), Gaps = 60/264 (22%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK 203
+ ++ T L LSG +R + L+GP +GK+TLL +AG G I + G +
Sbjct: 8 DVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLE 63
Query: 204 EFVPPRTS---AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
+ + + AY+SQQ V L R ++
Sbjct: 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-------------HDKTRTEL----- 105
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
+ + L LD +SGG+ +R+ +
Sbjct: 106 ---------------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAV 139
Query: 321 LVGPA-------RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373
++ ++L +DE N LD + + K L + G ++
Sbjct: 140 VLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ--QGLAIVMSSHDLNHTLR 197
Query: 374 LFDDVILLSEGQIVYQGPRVSVLD 397
LL G+++ G R VL
Sbjct: 198 HAHRAWLLKGGKMLASGRREEVLT 221
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 95.0 bits (236), Expect = 3e-22
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP---K 895
D +L N+ + + G + +VG SG+GK+TL ++ G + I G+
Sbjct: 13 PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALA 70
Query: 896 RQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
R G Q D ++++++ + ++ + A + +
Sbjct: 71 DPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLA---GAHDFISELR 126
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
I GLS QR+R+ IA LV NP I+ DE TS LD + ++MR + I
Sbjct: 127 EGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKI- 185
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
GRT++ H+ S ++ D ++ M++G
Sbjct: 186 CKGRTVIIIAHRLS--TVKNADRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 73.4 bits (180), Expect = 8e-15
Identities = 51/259 (19%), Positives = 96/259 (37%), Gaps = 45/259 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y+ + ILD+++ I+ + ++G SGK+TL + +G++ +GH
Sbjct: 11 YKPDSP--VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGH 65
Query: 201 GFKEFVPPRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
P V QD + ++ + + A V K +LA
Sbjct: 66 DLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAAKLAGAHDFISE 124
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
+ I + A G+SGGQ++R+
Sbjct: 125 LREGYNTIVGEQGA---------------------------------GLSGGQRQRIAIA 151
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
LV ++L DE ++ LD + + I++ + + G TVI + + D +
Sbjct: 152 RALVNNPKILIFDEATSALDYESEHVIMRNMH---KICKGRTVIIIAH-RLSTVKNADRI 207
Query: 379 ILLSEGQIVYQGPRVSVLD 397
I++ +G+IV QG +L
Sbjct: 208 IVMEKGKIVEQGKHKELLS 226
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.0 bits (231), Expect = 2e-21
Identities = 49/213 (23%), Positives = 87/213 (40%), Gaps = 12/213 (5%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L +T RPG +TALVG +G+GK+T+ +L G + + G P Q
Sbjct: 30 LQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQYEHRYLH 87
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R Q ++ E++ + + P+ E+ + L +
Sbjct: 88 RQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDTEV 145
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRT 1020
G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + R+
Sbjct: 146 DEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRS 204
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
++ S + E D +LF++ GG + G
Sbjct: 205 VLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 85.7 bits (212), Expect = 7e-19
Identities = 53/266 (19%), Positives = 100/266 (37%), Gaps = 45/266 (16%)
Query: 143 GNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202
NR + +L L+ +RP +T L+GP SGK+T+ L G++ +G
Sbjct: 22 PNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPL 78
Query: 203 KEFVPP---RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIK 259
++ R A V Q + QV +++E + + +T+ E+I
Sbjct: 79 PQYEHRYLHRQVAAVGQ-EPQVFGRSLQENIAYG------------LTQKPTMEEITAAA 125
Query: 260 PDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGE 319
F+ G DT V E +SGGQ++ +
Sbjct: 126 VKSGAHSFISGLPQGY--------------------DTEVD-EAGSQLSGGQRQAVALAR 164
Query: 320 LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379
L+ VL +D+ ++ LD+++ Q+ + L S + ++ E D ++
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHIL 222
Query: 380 LLSEGQIVYQGPRVSVLD---FFASM 402
L G I G +++ + +M
Sbjct: 223 FLEGGAIREGGTHQQLMEKKGCYWAM 248
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.5 bits (227), Expect = 4e-21
Identities = 56/214 (26%), Positives = 90/214 (42%), Gaps = 14/214 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901
+ + ++ G VG SG GK+TL+ ++AG +T I GD++I A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPA 70
Query: 902 RIS-GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G Q+ P L+V E++ F L + E V +V E+++L L
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKK---EVINQRVNQVAEVLQLAHLLDRK 127
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 1019
LS QR+R+ I LVA PS+ +DEP S LDA + + + GR
Sbjct: 128 PK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H D+++ + G + G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 4e-17
Identities = 51/271 (18%), Positives = 94/271 (34%), Gaps = 52/271 (19%)
Query: 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV 206
++ + D++ I + +GP GK+TLL +AG SG + +
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 207 PPRTS-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLD 265
P V Q ++V E + F + G + ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE-------VINQR----------- 110
Query: 266 IFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA 325
V + ++L L D +SGGQ++R+ G LV
Sbjct: 111 ----------------VNQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 326 RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385
V +DE + LD++ ++ G T+I + EA L D +++L G+
Sbjct: 150 SVFLLDEPLSNLDAA-LRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGR 208
Query: 386 IVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ G + + + P + VA F+
Sbjct: 209 VAQVGKPLEL--------YHYPADRFVAGFI 231
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.2 bits (221), Expect = 4e-20
Identities = 51/218 (23%), Positives = 95/218 (43%), Gaps = 12/218 (5%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 897
+D Q+L +++ +P + A G SG GK+T+ +L G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNI 69
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS 955
E + G+ Q+ G ++ AF +E +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-- 127
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+G G+ +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + ++
Sbjct: 128 QLNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL- 185
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
GRT + H+ S D++ F+++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 77.6 bits (191), Expect = 3e-16
Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 45/253 (17%)
Query: 141 YRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200
Y + IL D+S +P+ + GP GK+T+ L +G+IT +G
Sbjct: 11 YDDSE---QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQ 64
Query: 201 GFKEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGI 258
R+ QD + T+RE L + + + +LA
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 259 KPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318
PD+ +T VG E ISGGQ++RL
Sbjct: 125 MPDQL--------------------------------NTEVG-ERGVKISGGQRQRLAIA 151
Query: 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378
+ ++L +DE + LDS + + K L + G T + + D +
Sbjct: 152 RAFLRNPKILMLDEATASLDSESESMVQKALD---SLMKGRTTLVIAH-RLSTIVDADKI 207
Query: 379 ILLSEGQIVYQGP 391
+ +GQI G
Sbjct: 208 YFIEKGQITGSGK 220
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.1 bits (210), Expect = 9e-19
Identities = 63/218 (28%), Positives = 98/218 (44%), Gaps = 15/218 (6%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
++ L NV G ++G SGAGKTT M ++AG TG + D ++ K
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 898 -ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
R G Q P LT E++ F S+ E R VEEV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSK---EEIRKRVEEVAKILDIHHV 133
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV- 1015
LS Q++R+ +A LV +PS++ +DEP S LDAR V+ +
Sbjct: 134 LN-----HFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
G T++ H P+ DIF D + + G+L+ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.8 bits (178), Expect = 2e-14
Identities = 54/294 (18%), Positives = 110/294 (37%), Gaps = 60/294 (20%)
Query: 130 MTEALLRQL-RIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
M +++ + ++++ K+ LD+++ I +LGP +GKTT + +AG
Sbjct: 1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58
Query: 189 LQVSGKITYNGHGF----KEFVPP--RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242
+G++ ++ K VPP R V Q +T E + F
Sbjct: 59 ---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAF-------PLT 108
Query: 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302
+++ R++ VE + KIL + +
Sbjct: 109 NMKMSKEEIRKR---------------------------VEEVAKILDIHHVLNH----- 136
Query: 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+ +SG Q++R+ LV +L +DE + LD+ + L ++ G T++
Sbjct: 137 FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDA-RMRDSARALVKEVQSRLGVTLL 195
Query: 363 SLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
+ + + + D V +L +G++V G + + P VA +
Sbjct: 196 VVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL--------YDNPVSIQVASLI 241
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 85.0 bits (210), Expect = 1e-18
Identities = 56/213 (26%), Positives = 87/213 (40%), Gaps = 16/213 (7%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGG-IIEGDIYISGYPKRQETFARI 903
++ + G L+G SG GKTT + ++AG + G I GD ++ K +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80
Query: 904 SG--YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
Q+ P +TV +++ F LR E+ V EV EL+ LT L
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEI---DQRVREVAELLGLTELLNRKP 137
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRT 1020
LS QR+R+ + +V P + MDEP S LDA+ + ++ + G T
Sbjct: 138 R-----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVT 192
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ H + D + M R G L G
Sbjct: 193 TIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 77.3 bits (190), Expect = 4e-16
Identities = 53/287 (18%), Positives = 97/287 (33%), Gaps = 47/287 (16%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL 189
M L + G +T + ++S ++ +LLGP GKTT L +AG
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS- 56
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G+I V+ + + + Q + + +
Sbjct: 57 --RGQIYIGDK------------LVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNI 102
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
A K+ + E V + ++LGL + + +SG
Sbjct: 103 AFPLKLRKVPRQEIDQR---------------VREVAELLGLTELLNRKPRE-----LSG 142
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQ++R+ G +V +V MDE + LD + ++ + G T I +
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLD-AKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201
Query: 370 EAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + +++ G + G V + P VA F+
Sbjct: 202 EAMTMGDRIAVMNRGVLQQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 75.5 bits (185), Expect = 1e-15
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 23/214 (10%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG----RKTGGIIEGDIYISGYPKRQETF 900
L N++ G ++G +GAGKT ++++AG +++G P++
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK---- 71
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
+ QN P + V ++L F ++ + + V++ + L
Sbjct: 72 -HDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK---------RVLDTARDLKIEHLL 121
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGR 1019
P LS +++R+ +A LV NP I+ +DEP S LD R + +
Sbjct: 122 DRNP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKL 179
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
T++ H + + D + + G+LI G
Sbjct: 180 TVLHITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 71.2 bits (174), Expect = 3e-14
Identities = 52/267 (19%), Positives = 99/267 (37%), Gaps = 55/267 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPR- 209
LD+LS + ++LGP +GKT L +AG SG+I +G + P +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 210 TSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A+V Q M V++ L+F + + + ++
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFGMRMKKIK----------DPKR--------------- 107
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
V + L ++ D +SGG+++R+ LV ++L
Sbjct: 108 ------------VLDTARDLKIEHLLD-----RNPLTLSGGEQQRVALARALVTNPKILL 150
Query: 330 MDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQ 389
+DE + LD T + + + + TV+ + EA + D + ++ +G+++
Sbjct: 151 LDEPLSALDP-RTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQV 209
Query: 390 GPRVSVLDFFASMGFSCPKRKNVADFL 416
G + F P VA F+
Sbjct: 210 GKPEEI--------FEKPVEGRVASFV 228
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 2e-14
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 20/204 (9%)
Query: 854 PGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIE-GDIYISGYPKRQETFARISGYCEQN 910
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
P L+V ++ + E + V E+ E + + L LS
Sbjct: 79 YALFPHLSVYRNIAYGLRNVERVERDRR-----VREMAEKLGIAHLLDRKPA-----RLS 128
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS 1029
+R+R+ +A LV P ++ +DEP S +D + ++M +R + I+ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1030 IDIFESFDELLFMKRGGELIYAGP 1053
+ DE+ M G ++ G
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGK 210
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 60.0 bits (145), Expect = 3e-10
Identities = 48/252 (19%), Positives = 88/252 (34%), Gaps = 55/252 (21%)
Query: 166 LLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTS-AYVSQQDWQVAEM 224
LLGP +GK+ L +AG + G++ NG P R +V Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEY 284
+V + + + + + E+A + IA +
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLL------------------------- 120
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
D +SGG+++R+ LV R+L +DE + +D T
Sbjct: 121 ----------------DRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGF 404
+++ + ++ + EA L D+V ++ G+IV +G +
Sbjct: 165 LME-ELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 405 SCPKRKNVADFL 416
K VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 48.8 bits (115), Expect = 7e-07
Identities = 17/187 (9%), Positives = 38/187 (20%), Gaps = 35/187 (18%)
Query: 859 ALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918
+ G G GKTTL+ + R + R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLT 978
+ + S + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038
++ +DE + + + + +V TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMEL-FSKKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1039 LLFMKRG 1045
+ +
Sbjct: 149 IRRLPGA 155
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 37.7 bits (86), Expect = 0.004
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 5/66 (7%)
Query: 165 LLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVA 222
++ G P GKTTL+ + RLG + E + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 223 EMTVRE 228
Sbjct: 61 SKFFTS 66
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.2 bits (100), Expect = 9e-05
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 3/124 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLL--ALAGRLGHHLQVSGKITYNGHGFKEFVP 207
LD L G I +T + G +GKT + A+ +L F P
Sbjct: 12 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRP 71
Query: 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIF 267
R A + +++ A + + + A + D ++
Sbjct: 72 ERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALY 131
Query: 268 MKSF 271
+
Sbjct: 132 RTDY 135
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Score = 43.1 bits (100), Expect = 1e-04
Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRT 210
++D + R + ++ GK+T + A + G + + E
Sbjct: 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL-AMLEESVEETAEDL 83
Query: 211 SAYVSQQDWQVAEMTVRETLDFA 233
++ + ++ RE ++
Sbjct: 84 IGLHNRVRLRQSDSLKREIIENG 106
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.0 bits (97), Expect = 2e-04
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGK 194
LD L G + +T L G +GK+ L LA L + G
Sbjct: 23 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGG 67
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 40.4 bits (93), Expect = 0.001
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185
LD + + + L+ P +GK+ L L LA ++
Sbjct: 19 LDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQI 53
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 40.1 bits (92), Expect = 0.001
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
LD L G + +T G SGKT ++
Sbjct: 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSC 55
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.5 bits (88), Expect = 0.002
Identities = 14/97 (14%), Positives = 31/97 (31%), Gaps = 3/97 (3%)
Query: 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQ 217
+L ++ GP GK+T LA +L + + G I G + A +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254
+ + D + + + + + +
Sbjct: 62 ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKV 98
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 39.2 bits (90), Expect = 0.002
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALA 182
DD G + R TL+ G +GKT +
Sbjct: 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFL 47
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Score = 39.1 bits (90), Expect = 0.002
Identities = 9/39 (23%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188
LD+ G + L G +GKT L+ +
Sbjct: 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACAN 53
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.003
Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 11/130 (8%)
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
+E +A L + E E L + G + L+ L
Sbjct: 294 VELAGGNASLTIEDEDEPFNAGIKYHATPPLKRFKDMEYLSGGEKTVAALA------LLF 347
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
A+ +DE + LD + +R N + + +FE D L
Sbjct: 348 AINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDAL 405
Query: 1040 L---FMKRGG 1046
+ ++
Sbjct: 406 VGVYRQQQEN 415
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1419 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.62 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.47 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.35 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.29 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.05 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.96 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.81 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.72 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.43 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.29 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 98.03 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.91 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.86 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.79 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.47 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.47 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.41 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.27 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.21 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.19 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.13 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.06 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.05 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.01 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.92 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.92 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.9 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.87 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.87 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.87 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.86 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.83 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.81 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.8 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.79 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.73 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.72 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.7 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.69 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.67 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.66 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.65 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.65 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.64 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.63 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.59 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.57 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.55 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.54 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.53 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.53 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.5 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.46 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.45 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.41 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.41 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.34 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.34 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.33 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.3 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.29 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.29 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.28 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.27 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.24 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.24 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.2 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.2 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.17 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.16 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.13 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.13 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.12 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.11 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.1 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.09 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.09 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.09 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.08 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.07 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.06 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 96.06 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.02 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.02 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.01 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.0 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 96.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.98 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.98 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.98 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.98 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.97 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.95 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.95 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.94 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.93 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.92 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.92 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.92 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.92 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.91 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.89 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.89 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.89 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.89 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.87 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.86 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.85 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.84 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.84 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.83 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.82 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.8 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.79 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.78 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.76 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.74 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.73 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.72 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.72 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.69 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.69 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.68 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.65 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.64 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.63 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.62 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.6 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.57 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.56 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.55 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.54 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.54 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.53 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.52 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.49 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.45 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.43 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.42 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.41 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.41 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.4 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.4 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.4 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.39 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.38 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.35 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.32 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.31 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.3 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.3 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.23 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.2 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.18 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 95.15 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.1 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.08 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.08 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.07 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.04 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.02 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.99 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.98 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.97 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.96 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.95 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.9 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.9 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.87 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.85 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.85 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.82 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.8 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.8 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.77 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.76 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.72 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.71 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.67 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.65 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.65 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.63 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.62 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.59 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.58 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.54 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.54 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.53 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.51 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.46 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.44 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.43 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.42 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.4 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.38 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.34 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.31 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.28 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.27 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.25 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.24 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.21 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.2 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.17 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.15 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.14 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 94.14 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.14 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.12 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 94.11 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.08 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.08 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.06 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.06 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.05 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.04 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.03 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.02 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.99 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.98 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.97 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.95 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.93 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.89 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.85 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.83 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.82 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.76 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.76 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 93.75 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.74 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.72 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.7 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.7 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.69 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.68 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.67 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.62 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.56 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.52 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.47 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.44 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.44 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.4 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.37 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.32 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.31 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.3 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.3 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 93.29 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.28 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.28 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.27 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.25 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.23 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.19 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 93.14 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 93.12 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.11 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.11 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.05 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.02 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.92 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.91 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.88 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.83 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.76 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.75 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.71 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 92.69 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.65 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 92.65 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.65 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.64 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.61 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.6 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.6 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.59 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.56 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 92.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.52 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.51 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.48 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.46 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.46 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.43 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.38 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 92.36 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.34 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.33 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.33 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.33 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.27 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.26 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.23 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.22 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.18 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.15 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.14 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.13 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.12 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 92.09 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.09 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.06 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.05 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.05 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.03 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.0 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.0 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.98 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.94 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.89 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.84 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.81 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.81 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.79 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.73 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.73 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.69 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.68 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.67 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.62 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.58 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.57 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.56 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.56 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.54 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 91.49 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.48 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.47 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 91.42 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.42 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.36 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 91.34 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.31 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.29 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 91.28 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 91.24 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 91.23 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.19 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.18 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.18 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 91.17 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.12 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.07 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.06 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.06 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.91 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.83 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.77 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.76 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.73 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 90.69 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.65 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.58 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.47 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.41 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.23 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.18 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.17 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 90.12 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.06 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.04 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.86 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 89.73 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 89.64 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.64 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 89.47 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 89.4 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.23 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.18 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.11 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.1 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.06 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.88 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 88.59 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.54 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 88.38 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.37 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.07 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.97 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 87.9 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.82 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.74 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.69 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.45 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.28 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.94 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.69 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.69 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.61 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 86.29 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.22 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.89 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.81 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.76 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.66 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 85.5 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.45 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 85.31 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 84.38 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 84.23 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 84.08 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 83.8 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.08 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 82.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 82.89 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.87 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.65 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.91 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.53 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=330.67 Aligned_cols=208 Identities=24% Similarity=0.354 Sum_probs=177.2
Q ss_pred CEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCC
Q ss_conf 4013104147673975999986999957999999973949999700199997933899999-831899826777788999
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 147 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~-~~~~ayv~Q~d~~~~~lT 225 (1419)
..++|+|+|+.+++||+++|+|||||||||||++|+|.++++ +|+|.+||.++.+..+ +|.++||+|++.+++.+|
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~t 88 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLS 88 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC-----
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHH
T ss_conf 999981117788699899999899982999999996587888---88899999977888644432223433420264333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999972230288873024479789988708999800789998742046503489999999909943234434574578
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 VrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~r 305 (1419)
|+||+.|+..+++... .+...+++.+++.++|++.+|..+.
T Consensus 89 v~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~l~~~~~~~~~----- 129 (232)
T d2awna2 89 VAENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKPK----- 129 (232)
T ss_dssp --------------------------------------------------CHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHCCHH-----
T ss_conf 7889789998759988----------------------------------9999999999975788656648965-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 88947867999999980799484986698899989999999999999861599599998459148985069199972983
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 gLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~ 385 (1419)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|+ +.++|...++..++|+|++|.+|+
T Consensus 130 ~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~ti-i~vTHd~~~a~~~~dri~vm~~G~ 208 (232)
T d2awna2 130 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTM-IYVTHDQVEAMTLADKIVVLDAGR 208 (232)
T ss_dssp ----------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEE-EEEESCHHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-EEEECCHHHHHHHCCEEEEEECCE
T ss_conf 6999999999999997039988997588878898899899999999987429879-999489999999699999997999
Q ss_pred EEEECCHHHHHH
Q ss_conf 899728344999
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 ivy~Gp~~~~~~ 397 (1419)
++.+|+++++.+
T Consensus 209 iv~~G~~~el~~ 220 (232)
T d2awna2 209 VAQVGKPLELYH 220 (232)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEEECHHHHHH
T ss_conf 999808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=326.35 Aligned_cols=208 Identities=25% Similarity=0.337 Sum_probs=179.7
Q ss_pred CEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCC
Q ss_conf 4013104147673975999986999957999999973949999700199997933899999-831899826777788999
Q 000562 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 147 ~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~-~~~~ayv~Q~d~~~~~lT 225 (1419)
...+|+|||+.+++||+++|+||||||||||+++|+|.++++ +|+|.+||.++....+ +|.++||+|++.+++.+|
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 94 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMT 94 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCC
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCH
T ss_conf 999981306788799899999999982999999997589998---78799916413547700015899800335342220
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999972230288873024479789988708999800789998742046503489999999909943234434574578
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 VrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~r 305 (1419)
|+||+.|.++.++... . +...+++.+++.+||++.+|..+ .
T Consensus 95 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~-----~ 135 (239)
T d1v43a3 95 VYENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYP-----A 135 (239)
T ss_dssp HHHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCT-----T
T ss_pred HHHHHHHHHHHCCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHCCCH-----H
T ss_conf 9999999998739999----------9------------------------99999999998759855660995-----4
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCE
Q ss_conf 88947867999999980799484986698899989999999999999861599599998459148985069199972983
Q 000562 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1419)
Q Consensus 306 gLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~ 385 (1419)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.++++....+.| ++.++|...++..++|+|++|.+|+
T Consensus 136 ~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~t-ii~vTHd~~~a~~~~dri~vm~~G~ 214 (239)
T d1v43a3 136 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT-TIYVTHDQVEAMTMGDRIAVMNRGQ 214 (239)
T ss_dssp TCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCE-EEEEESCHHHHHHHCSEEEEEETTE
T ss_pred HCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCE
T ss_conf 699999889999766404998243068866689899989999999998731980-7999489999998699999998999
Q ss_pred EEEECCHHHHHH
Q ss_conf 899728344999
Q 000562 386 IVYQGPRVSVLD 397 (1419)
Q Consensus 386 ivy~Gp~~~~~~ 397 (1419)
++..|+++++..
T Consensus 215 iv~~G~~~el~~ 226 (239)
T d1v43a3 215 LLQIGSPTEVYL 226 (239)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHH
T ss_conf 999859999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=325.04 Aligned_cols=220 Identities=22% Similarity=0.282 Sum_probs=168.0
Q ss_pred CCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------CCCEEEEECCCCC
Q ss_conf 5401310414767397599998699995799999997394999970019999793389999------9831899826777
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PPRTSAYVSQQDW 219 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~------~~~~~ayv~Q~d~ 219 (1419)
.+..+|+|||+.+++||+++|+||||||||||+++|+|..+++ +|+|.++|.++.... .+|.++||+|+..
T Consensus 16 g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~ 92 (242)
T d1oxxk2 16 GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA 92 (242)
T ss_dssp GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSC
T ss_pred CCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCC
T ss_conf 9989980407898799899999899980999999997586888---7459999999513731115312045147730433
Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 78899999999972230288873024479789988708999800789998742046503489999999909943234434
Q 000562 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1419)
Q Consensus 220 ~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~V 299 (1419)
++|.+||+||+.|+.+..+... . +.+.+++.+++.+||++.+|..+
T Consensus 93 L~p~ltv~eni~~~l~~~~~~~----------~------------------------~~~~~v~~~l~~~gL~~~~~~~p 138 (242)
T d1oxxk2 93 LYPNLTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNHFP 138 (242)
T ss_dssp CCTTSCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCG
T ss_pred CCCCCCHHHHHHHHHHHHCCCH----------H------------------------HHHHHHHHHHHHCCHHHHHHCCH
T ss_conf 4666657777665567613799----------9------------------------99999999986659176664895
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 57457888947867999999980799484986698899989999999999999861599599998459148985069199
Q 000562 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 300 G~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~Ii 379 (1419)
+ .|||||||||+||++|+.+|+++++||||+|||+.++.++++.++++.+..+.| ++.++|...++..++|+|+
T Consensus 139 ~-----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~t-vi~vTHd~~~~~~~~dri~ 212 (242)
T d1oxxk2 139 R-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVT-LLVVSHDPADIFAIADRVG 212 (242)
T ss_dssp G-----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCE-EEEEESCHHHHHHHCSEEE
T ss_pred H-----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCE-EEEEECCHHHHHHHCCEEE
T ss_conf 4-----599999858998757760466145447866799899889989999998635987-9999799999999699999
Q ss_pred EECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 9729838997283449999881799999999957899
Q 000562 380 LLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1419)
Q Consensus 380 lL~~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~aDfl 416 (1419)
+|.+|+++..|+++++.+ .|.+.-+++|+
T Consensus 213 vm~~G~iv~~g~~~el~~--------~P~~~~~~~fl 241 (242)
T d1oxxk2 213 VLVKGKLVQVGKPEDLYD--------NPVSIQVASLI 241 (242)
T ss_dssp EEETTEEEEEECHHHHHH--------SCSSHHHHHHH
T ss_pred EEECCEEEEECCHHHHHH--------CCCCHHHHHCC
T ss_conf 998999999869999986--------89997998516
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=322.68 Aligned_cols=214 Identities=24% Similarity=0.358 Sum_probs=182.2
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHH
Q ss_conf 13104147673975999986999957999999973949999700199997933899999-83189982677778899999
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 149 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~-~~~~ayv~Q~d~~~~~lTVr 227 (1419)
.+|+|||+.+++||+++|+||||||||||+++|+|.+.++ +|+|.++|.++.+..+ ++.++||+|++.+++.+||+
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~ 90 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVK 90 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHH
T ss_conf 7884337898799899999899982999999996476888---7889995673465216574056151211117466577
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99997223028887302447978998870899980078999874204650348999999990994323443457457888
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 EtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgL 307 (1419)
||+.|+.+.++... ...++.+++.+||.+.+|..++ .|
T Consensus 91 enl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~-----~L 128 (229)
T d3d31a2 91 KNLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPL-----TL 128 (229)
T ss_dssp HHHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGG-----GS
T ss_pred HHHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHH-----HC
T ss_conf 88888776405538-------------------------------------9999999998256555758955-----47
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 94786799999998079948498669889998999999999999986159959999845914898506919997298389
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~iv 387 (1419)
||||||||+||++|+.+|++++|||||+|||+.++.+|.+.++++.+..+ ++++.++|...++..++|+|++|.+|+++
T Consensus 129 SGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g-~tii~vtHd~~~~~~~~drv~vm~~G~iv 207 (229)
T d3d31a2 129 SGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLI 207 (229)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEE
T ss_pred CHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEEECCEEE
T ss_conf 99984014030434436771443478767998999999999999986479-68999749999999969999999799999
Q ss_pred EECCHHHHHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 97283449999881799999999957899
Q 000562 388 YQGPRVSVLDFFASMGFSCPKRKNVADFL 416 (1419)
Q Consensus 388 y~Gp~~~~~~~F~~lGf~cp~~~~~aDfl 416 (1419)
++|+++++.+ -|...-+++|+
T Consensus 208 ~~g~~~el~~--------~P~~~~v~~fl 228 (229)
T d3d31a2 208 QVGKPEEIFE--------KPVEGRVASFV 228 (229)
T ss_dssp EEECHHHHHS--------SCCTTHHHHHH
T ss_pred EECCHHHHHH--------CCCCHHHHHCC
T ss_conf 9869999986--------89987998506
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=322.71 Aligned_cols=205 Identities=21% Similarity=0.320 Sum_probs=99.6
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC------CCEEEEECCCCCCC
Q ss_conf 013104147673975999986999957999999973949999700199997933899999------83189982677778
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQV 221 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~------~~~~ayv~Q~d~~~ 221 (1419)
..+|+|||+.+++||+++|+||||||||||+++|+|..+++ +|+|.++|.++..... ++.++||+|+..++
T Consensus 18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~ 94 (240)
T d3dhwc1 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCC
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89861505788699799998999898889999875886366---773288676852087555115541664302252227
Q ss_pred CCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 89999999997223028887302447978998870899980078999874204650348999999990994323443457
Q 000562 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1419)
Q Consensus 222 ~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~ 301 (1419)
+.+||+||+.|+.+..+... .+...+++.+|+.+||++.+|..++
T Consensus 95 ~~~tv~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~L~~vgL~~~~~~~~~- 139 (240)
T d3dhwc1 95 SSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYPS- 139 (240)
T ss_dssp TTSBHHHHHHHHHHTTTCCT----------------------------------THHHHHHHHHHHHHSTTTTTSSCBS-
T ss_pred CCCCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCCHHHHCCHH-
T ss_conf 99649999999999849998----------------------------------9999999999997699035548943-
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEE
Q ss_conf 45788894786799999998079948498669889998999999999999986159959999845914898506919997
Q 000562 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1419)
Q Consensus 302 ~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL 381 (1419)
.|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+ ++++.++|...++..++|+|++|
T Consensus 140 ----~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHdl~~~~~~~dri~vl 214 (240)
T d3dhwc1 140 ----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAVI 214 (240)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHC-CEEEEEBSCHHHHHHHCSEEEEE
T ss_pred ----HCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEEE
T ss_conf ----4999999899986401058986874465565898885679999999986469-78999838999999869999999
Q ss_pred CCCEEEEECCHHHH
Q ss_conf 29838997283449
Q 000562 382 SEGQIVYQGPRVSV 395 (1419)
Q Consensus 382 ~~G~ivy~Gp~~~~ 395 (1419)
.+|++++.|+++++
T Consensus 215 ~~G~iv~~G~~~ei 228 (240)
T d3dhwc1 215 SNGELIEQDTVSEV 228 (240)
T ss_dssp ETTEEEEEEETTTT
T ss_pred ECCEEEEECCHHHH
T ss_conf 79999998799999
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=321.58 Aligned_cols=206 Identities=26% Similarity=0.342 Sum_probs=124.0
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC------C-CCEEEEECCCCCC
Q ss_conf 01310414767397599998699995799999997394999970019999793389999------9-8318998267777
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------P-PRTSAYVSQQDWQ 220 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~------~-~~~~ayv~Q~d~~ 220 (1419)
.++|+|+|+.+++||+++|+||||||||||+++|+|.+.++ +|+|.++|.++.... + ++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 88999999999722302888730244797899887089998007899987420465034899999999099432344345
Q 000562 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1419)
Q Consensus 221 ~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG 300 (1419)
+|.+||+||+.|..+.++... . +...+++.+++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~~----------~------------------------e~~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVPR----------Q------------------------EIDQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCCH----------H------------------------HHHHHHHHHHHHCCCHHHHCCCHH
T ss_conf 310116676330687729998----------9------------------------999999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 74578889478679999999807994849866988999899999999999998615995999984591489850691999
Q 000562 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 301 ~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~Iil 380 (1419)
.|||||||||+||++|+.+|+++++||||+|||..++.+|++.++++.+..+ ++++.++|..+++..++|+|++
T Consensus 139 -----~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vTHd~~~~~~~~drv~v 212 (240)
T d1g2912 139 -----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (240)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred -----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-CEEEEECCCHHHHHHHCCEEEE
T ss_conf -----4999999999999998269988982588765698999899999999986369-8899995999999996999999
Q ss_pred ECCCEEEEECCHHHHH
Q ss_conf 7298389972834499
Q 000562 381 LSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 381 L~~G~ivy~Gp~~~~~ 396 (1419)
|.+|++++.|+++++.
T Consensus 213 m~~G~iv~~G~~~el~ 228 (240)
T d1g2912 213 MNRGVLQQVGSPDEVY 228 (240)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
T ss_conf 9899999985999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=316.07 Aligned_cols=202 Identities=27% Similarity=0.372 Sum_probs=181.2
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-------CCCCEEEEECCCCCC
Q ss_conf 5056210036874882999975799994679975709988963888999979027700-------112358997258878
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIH 913 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~-------~~~~~~gyv~Q~d~~ 913 (1419)
...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+.... ..+|.+|||+|++.+
T Consensus 15 ~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 9999856066886998999999999809999999964878--89898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 99833999999986612999785999999999999991996533773237888888999999999999996299951040
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1419)
Q Consensus 914 ~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lD 993 (1419)
+|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+||
T Consensus 93 ~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p-----~~LSGGqkQRv~IAraL~~~P~iLllD 164 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMD 164 (240)
T ss_dssp CTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred CCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 31011667633068772---9998999999999998759966762993-----349999999999999982699889825
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999999999999999865-9989999168777899731749899069799993799
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsGLD~~~a~~i~~~lr~l~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
|||+|||+.+...|++.++++.++ |.|||+++|+.. ++...+|++++|.+ |+++..|++
T Consensus 165 EPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~~-G~iv~~G~~ 224 (240)
T d1g2912 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSP 224 (240)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 8876569899989999999998636988999959999-99996999999989-999998599
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=318.54 Aligned_cols=202 Identities=25% Similarity=0.361 Sum_probs=182.2
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 505621003687488299997579999467997570998896388899997902770-0112358997258878998339
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...+|.+|||+|++.++|.+||
T Consensus 18 ~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 9999813067887998999999999829999999975899--98787999164135477000158998003353422209
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf 99999986612999785999999999999991996533773237888888999999999999996299951040999999
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGL 999 (1419)
+|++.|.+.++ ..+.++.++.++++++.++|.+..+..+ ..||||||||++||++|+.+|+||+|||||+||
T Consensus 96 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRvaiAraL~~~P~iLllDEPts~L 167 (239)
T d1v43a3 96 YENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 167 (239)
T ss_dssp HHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred HHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCC
T ss_conf 99999999873---9999999999999998759855660995-----469999988999976640499824306886668
Q ss_pred CHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999999999865-9989999168777899731749899069799993799
Q 000562 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~a~~i~~~lr~l~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
|+.++..+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 168 D~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~~-G~iv~~G~~ 221 (239)
T d1v43a3 168 DAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSP 221 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 9899989999999998731980799948999-99986999999989-999998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=320.30 Aligned_cols=202 Identities=28% Similarity=0.398 Sum_probs=180.2
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC-CCCCEEEEECCCCCCCCCCCH
Q ss_conf 5056210036874882999975799994679975709988963888999979027700-112358997258878998339
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~-~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
...+|+|||+.+++||.++|+||||||||||+++++|... +.+|+|.+||.+.... ..+|.+|||+|++.++|.+||
T Consensus 12 ~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~--p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 9999811177886998999998999829999999965878--88888999999778886444322234334202643337
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf 99999986612999785999999999999991996533773237888888999999999999996299951040999999
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGL 999 (1419)
+|++.|...++. .+.++.+++++++++.++|.+..+..+. .||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQRvaiAraL~~~P~illlDEPts~L 161 (232)
T d2awna2 90 AENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNL 161 (232)
T ss_dssp ------------------CHHHHHHHHHHHHC--------------------------CHHHHHHTCCSEEEEESTTTTS
T ss_pred HHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 889789998759---9889999999999975788656648965-----69999999999999970399889975888788
Q ss_pred CHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 99999999999999986-59989999168777899731749899069799993799
Q 000562 1000 DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1000 D~~~a~~i~~~lr~l~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
|+.++..|++.++++.+ .|.|||+++|++. ++.+.+|++++|. +|+++..|++
T Consensus 162 D~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 162 DAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9889989999999998742987999948999-9999699999997-9999998089
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=311.25 Aligned_cols=204 Identities=25% Similarity=0.409 Sum_probs=162.5
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC---C----CCCEEEEECCCCCC
Q ss_conf 5056210036874882999975799994679975709988963888999979027700---1----12358997258878
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIH 913 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~---~----~~~~~gyv~Q~d~~ 913 (1419)
...+|+|||+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+.... . +++.+|||+|+..+
T Consensus 17 ~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~--p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l 94 (230)
T d1l2ta_ 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL 94 (230)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC
T ss_pred EEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCC--CCCCEEEECCEECCCCCHHHCCHHHCCEEEEEECCHHH
T ss_conf 0898713377884997999988999982165575068877--77662699999857688555123125557788041241
Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
Q ss_conf 998339999999866129997859999999999999919965-3377323788888899999999999999629995104
Q 000562 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1419)
Q Consensus 914 ~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~l 992 (1419)
.|.+||+|++.+...++.....+.+++.+.+.+.++.++|.+ ..+..+ ..||||||||++||++|+.+|++|++
T Consensus 95 ~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~LSGGqkQRvaIAraL~~~P~lLll 169 (230)
T d1l2ta_ 95 IPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILA 169 (230)
T ss_dssp CTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HHCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 7686688877578887224789999999999998876242345534880-----23899999999987565227888994
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 0999999999999999999999865-9989999168777899731749899069799993799
Q 000562 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 993 DEPTsGLD~~~a~~i~~~lr~l~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
||||+|||+.++..|++.++++.+. |.|||+++|++ +..+.+|++++|.+ |+++..|++
T Consensus 170 DEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~~-G~Iv~~g~~ 229 (230)
T d1l2ta_ 170 DQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD-GEVEREEKL 229 (230)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEET-TEEEEEEEC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEEC-CEEEEECCC
T ss_conf 6876546989999999999999984399999987888--99986998999989-999995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=315.59 Aligned_cols=215 Identities=28% Similarity=0.408 Sum_probs=186.2
Q ss_pred EEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 37605202463131001235444450562100368748829999757999946799757099889638889999790277
Q 000562 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1419)
Q Consensus 817 ~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~ 896 (1419)
++.+|+++..+ .....+|+|||+.+++||.++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~--p~~G~I~~~g~~i~ 70 (242)
T d1oxxk2 4 IIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVA 70 (242)
T ss_dssp EEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEE
T ss_pred EEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEEE
T ss_conf 99975799988-----------999899804078987998999998999809999999975868--88745999999951
Q ss_pred C------CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0------0112358997258878998339999999866129997859999999999999919965337732378888889
Q 000562 897 Q------ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970 (1419)
Q Consensus 897 ~------~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glS 970 (1419)
. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..++ .||
T Consensus 71 ~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~LS 142 (242)
T d1oxxk2 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----ELS 142 (242)
T ss_dssp ETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSC
T ss_pred CCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HCC
T ss_conf 3731115312045147730433466665777766556761---37999999999999866591766648954-----599
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 9999999999999629995104099999999999999999999986-599899991687778997317498990697999
Q 000562 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1419)
Q Consensus 971 gGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~v 1049 (1419)
||||||++||++|+.+|++|++||||+|||+.++..+++.++++.+ .|.|||.++|++. ++.+.+|++++|.+ |+++
T Consensus 143 GGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~~-G~iv 220 (242)
T d1oxxk2 143 GAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLV 220 (242)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999858998757760466145447866799899889989999998635987999979999-99996999999989-9999
Q ss_pred EECCC
Q ss_conf 93799
Q 000562 1050 YAGPL 1054 (1419)
Q Consensus 1050 y~G~~ 1054 (1419)
..|++
T Consensus 221 ~~g~~ 225 (242)
T d1oxxk2 221 QVGKP 225 (242)
T ss_dssp EEECH
T ss_pred EECCH
T ss_conf 98699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=312.94 Aligned_cols=203 Identities=26% Similarity=0.325 Sum_probs=179.3
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC------CCCCCEEEEECCCCCCC
Q ss_conf 505621003687488299997579999467997570998896388899997902770------01123589972588789
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQNDIHS 914 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~------~~~~~~~gyv~Q~d~~~ 914 (1419)
..++|+|||+.+++||.+||+||||||||||+++|+|... +.+|+|.++|.+... ..++|.+|||+|+..++
T Consensus 17 ~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~--p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~ 94 (240)
T d3dhwc1 17 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 94 (240)
T ss_dssp EEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC--CSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCC
T ss_pred EEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCC--CCCCCEEECCEEEEECCHHHHHHHHCCCCCCCCCCCCC
T ss_conf 4898615057886997999989998988899998758863--66773288676852087555115541664302252227
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 98339999999866129997859999999999999919965337732378888889999999999999962999510409
Q 000562 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 915 ~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDE 994 (1419)
|.+||+|++.|...++. .+.++.++.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|++||
T Consensus 95 ~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~-----~~LSGG~~QRvaiAraL~~~P~lLllDE 166 (240)
T d3dhwc1 95 SSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDE 166 (240)
T ss_dssp TTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCB-----SCCCHHHHHHHHHHHHHHTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCH-----HHCCHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 99649999999999849---998999999999999769903554894-----3499999989998640105898687446
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 99999999999999999999865-99899991687778997317498990697999937999
Q 000562 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 995 PTsGLD~~~a~~i~~~lr~l~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~g 1055 (1419)
||+|||+.++..|++.++++.+. |.|||+++|+.. ++...+|++++|.+ |+++..|++.
T Consensus 167 Pt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~~-G~iv~~G~~~ 226 (240)
T d3dhwc1 167 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS 226 (240)
T ss_dssp GGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEET-TEEEEEEETT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 556589888567999999998646978999838999-99986999999979-9999987999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=309.35 Aligned_cols=207 Identities=19% Similarity=0.246 Sum_probs=172.8
Q ss_pred CCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC-------CEEEEECCC
Q ss_conf 7540131041476739759999869999579999999739499997001999979338999998-------318998267
Q 000562 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP-------RTSAYVSQQ 217 (1419)
Q Consensus 145 ~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~-------~~~ayv~Q~ 217 (1419)
+....+|+|+|+.+++||+++|+|||||||||||++|+|..+++ +|+|.++|.++....++ +.++||+|+
T Consensus 15 ~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~ 91 (230)
T d1l2ta_ 15 EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQ 91 (230)
T ss_dssp TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTT
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECC
T ss_conf 82089871337788499799998899998216557506887777---662699999857688555123125557788041
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC-CCC
Q ss_conf 7778899999999972230288873024479789988708999800789998742046503489999999909943-234
Q 000562 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CAD 296 (1419)
Q Consensus 218 d~~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~-~~d 296 (1419)
+.++|.+||+||+.|+...+..+... .. +....+...|+.+||.+ .+|
T Consensus 92 ~~l~~~~tv~eni~~~~~~~~~~~~~-------~~------------------------~~~~~~~~~l~~~~L~~~~~~ 140 (230)
T d1l2ta_ 92 FNLIPLLTALENVELPLIFKYRGAMS-------GE------------------------ERRKRALECLKMAELEERFAN 140 (230)
T ss_dssp CCCCTTSCHHHHHHHHHHTCCSSCCC-------HH------------------------HHHHHHHHHHHHTTCCGGGTT
T ss_pred HHHCCCCCHHHHHHHHHHHHCCCCCC-------HH------------------------HHHHHHHHHHHHHCHHHHHHC
T ss_conf 24176866888775788872247899-------99------------------------999999998876242345534
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCC
Q ss_conf 43457457888947867999999980799484986698899989999999999999861599599998459148985069
Q 000562 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD 376 (1419)
Q Consensus 297 T~VG~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD 376 (1419)
..+ ..|||||||||+||++|+.+|+++++||||+|||+.++.+|++.|+++.+..+.|+|+ ++|...++ .++|
T Consensus 141 ~~p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~-vTHd~~~a-~~~d 213 (230)
T d1l2ta_ 141 HKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV-VTHDINVA-RFGE 213 (230)
T ss_dssp CCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEE-ECSCHHHH-TTSS
T ss_pred CCH-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEE-ECCCHHHH-HHCC
T ss_conf 880-----2389999999998756522788899468765469899999999999999843999999-87888999-8699
Q ss_pred EEEEECCCEEEEECCH
Q ss_conf 1999729838997283
Q 000562 377 DVILLSEGQIVYQGPR 392 (1419)
Q Consensus 377 ~IilL~~G~ivy~Gp~ 392 (1419)
+|++|.+|+++..|+.
T Consensus 214 rv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 214 RIIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEEETTEEEEEEEC
T ss_pred EEEEEECCEEEEECCC
T ss_conf 8999989999995257
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=312.07 Aligned_cols=210 Identities=24% Similarity=0.363 Sum_probs=168.7
Q ss_pred CCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCC
Q ss_conf 54013104147673975999986999957999999973949999700199997933899999---831899826777788
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~~ 222 (1419)
....+|+|+|+.+++|+.++|+||+|||||||+++|+|.+++. +|+|.+||.++.+... ++.++||+|++++ +
T Consensus 14 ~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f 89 (241)
T d2pmka1 14 DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVL-L 89 (241)
T ss_dssp TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCC-T
T ss_pred CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCC-C
T ss_conf 9960374248998499999999999998999999997357888---88999999994400246553528898244655-7
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999972230288873024479789988708999800789998742046503489999999909943234434574
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~ 302 (1419)
+.||+||+.|+... ...+...+.++. . + ..-.+..++...||.+|..
T Consensus 90 ~~Ti~eNi~~~~~~----~~~~~~~~~~~~---~------------------~--------~~~~i~~~~~~~~t~i~~~ 136 (241)
T d2pmka1 90 NRSIIDNISLANPG----MSVEKVIYAAKL---A------------------G--------AHDFISELREGYNTIVGEQ 136 (241)
T ss_dssp TSBHHHHHCTTSTT----CCHHHHHHHHHH---H------------------T--------CHHHHTTSTTGGGSBCSTT
T ss_pred CCCCCCCCCCCCCC----CCHHHHHHHHHH---H------------------H--------HHHHHHHHHCCHHHHCCCC
T ss_conf 84000352235755----438889999999---7------------------5--------5788876320134432787
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 57888947867999999980799484986698899989999999999999861599599998459148985069199972
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~ 382 (1419)
+ ..|||||||||+|||+|+.+|++++||||||+||+.++.+|++.|+++.+ ++|+|+ +.|... ....+|+|++|.
T Consensus 137 g-~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~-~~~~~D~i~vl~ 211 (241)
T d2pmka1 137 G-AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVII-IAHRLS-TVKNADRIIVME 211 (241)
T ss_dssp T-TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEE-ECSSGG-GGTTSSEEEEEE
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHH-HHHHCCEEEEEE
T ss_conf 8-86698898987544344416513556477655598999999999999858--998999-978899-998499999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 983899728344999
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~ivy~Gp~~~~~~ 397 (1419)
+|+++.+|++++++.
T Consensus 212 ~G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 212 KGKIVEQGKHKELLS 226 (241)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999982
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=309.67 Aligned_cols=200 Identities=23% Similarity=0.313 Sum_probs=87.6
Q ss_pred EEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC--CCCCCEEEEECCCCCCCCCCCH
Q ss_conf 05621003687488299997579999467997570998896388899997902770--0112358997258878998339
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSPGLTV 919 (1419)
Q Consensus 842 ~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~--~~~~~~~gyv~Q~d~~~~~lTv 919 (1419)
+.+|+|+|+.+++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+|||+|.+..++.+|+
T Consensus 15 ~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~--p~~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv 92 (238)
T d1vpla_ 15 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQG 92 (238)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSBH
T ss_pred EEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCCCH
T ss_conf 999806256884897999999999999999999966988--788879998672446839887218675001546878667
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCC
Q ss_conf 99999986612999785999999999999991996533773237888888999999999999996299951040999999
Q 000562 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1419)
Q Consensus 920 ~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGL 999 (1419)
.|++.|.+.++. .+..+..+.++++++.++|.+..+..++ .+|||||||+.||++|+.+|+||+|||||+||
T Consensus 93 ~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~qrv~iA~al~~~p~illLDEPt~gL 164 (238)
T d1vpla_ 93 IEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164 (238)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred HHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 788898998617---9989999999999986797888850453-----37998989999999986599988733798897
Q ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECC
Q ss_conf 999999999999999865998999916877789973174989906979999379
Q 000562 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1419)
Q Consensus 1000 D~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~ 1053 (1419)
|+.++..+++.++++++.|.||++++|++. ++...+|++++|.+ |++++.|+
T Consensus 165 D~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~~-G~iv~~g~ 216 (238)
T d1vpla_ 165 DVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGT 216 (238)
T ss_dssp CHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECC
T ss_conf 989999999999999965998999959899-99996999999989-99999928
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=311.76 Aligned_cols=213 Identities=23% Similarity=0.345 Sum_probs=170.4
Q ss_pred CCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCC
Q ss_conf 54013104147673975999986999957999999973949999700199997933899999---831899826777788
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVA 222 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~~ 222 (1419)
.+..+|+|+|+.+++|+.++|+||||||||||+++|+|.+++. +|+|.+||.++.+... ++.++||+|++..+
T Consensus 25 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf- 100 (251)
T d1jj7a_ 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVF- 100 (251)
T ss_dssp TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCC-
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 9997674438998499899999999984999999986143787---689988998531101378887765404565002-
Q ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999972230288873024479789988708999800789998742046503489999999909943234434574
Q 000562 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1419)
Q Consensus 223 ~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~ 302 (1419)
..||+||+.|+..-.. ..+...+.+.+ ....-.+.+|++..||.+|..
T Consensus 101 ~~tv~eni~~g~~~~~---~~~~~~~~~~~-----------------------------~~~~~~i~~l~~g~~~~i~~~ 148 (251)
T d1jj7a_ 101 GRSLQENIAYGLTQKP---TMEEITAAAVK-----------------------------SGAHSFISGLPQGYDTEVDEA 148 (251)
T ss_dssp SSBHHHHHHCSCSSCC---CHHHHHHHHHH-----------------------------HTCHHHHHTSTTGGGCBCCSS
T ss_pred CCCHHHHHHHHHCCCC---HHHHHHHHHHH-----------------------------HHHHHHHHHCCCCCHHHHHCC
T ss_conf 7634655454210130---27889999999-----------------------------989999985612111367516
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 57888947867999999980799484986698899989999999999999861599599998459148985069199972
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~ 382 (1419)
...|||||||||+|||+|+.+|++++||||||+||+.+..+|++.|+++.+..+.|+++ +.|... ....+|+|++|.
T Consensus 149 -~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~-itH~l~-~~~~aDrI~vl~ 225 (251)
T d1jj7a_ 149 -GSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLL-ITQHLS-LVEQADHILFLE 225 (251)
T ss_dssp -CSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEE-ECSCHH-HHHTCSEEEEEE
T ss_pred -CCCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEE-EECCHH-HHHHCCEEEEEE
T ss_conf -76689547048998604456870787167576568536899999999976506989999-959799-998599999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 983899728344999
Q 000562 383 EGQIVYQGPRVSVLD 397 (1419)
Q Consensus 383 ~G~ivy~Gp~~~~~~ 397 (1419)
+|+++.+|+++++++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999985
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=309.29 Aligned_cols=197 Identities=23% Similarity=0.290 Sum_probs=175.6
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 5621003687488299997579999467997570998896388899997902770-011235899725887899833999
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 843 ~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
.+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...+|.+|||+|+..++|.+||+|
T Consensus 14 ~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~--p~sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 14 FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 78843378987998999998999829999999964768--8878899956734652165740561512111174665778
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH
Q ss_conf 99998661299978599999999999999199653377323788888899999999999999629995104099999999
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1419)
Q Consensus 922 ~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~ 1001 (1419)
++.|...++.-.. .++++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||+
T Consensus 92 nl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~ 160 (229)
T d3d31a2 92 NLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQRVALARALVTNPKILLLDEPLSALDP 160 (229)
T ss_dssp HHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCH
T ss_pred HHHHHHHHCCCCH------HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCH
T ss_conf 8888776405538------9999999998256555758955-----4799984014030434436771443478767998
Q ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999999986-59989999168777899731749899069799993799
Q 000562 1002 RAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1002 ~~a~~i~~~lr~l~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
.+...+++.++++.+ .|.|||+++|++. ++.+.+|++++|.+ |+++..|++
T Consensus 161 ~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~~-G~iv~~g~~ 212 (229)
T d3d31a2 161 RTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKP 212 (229)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 99999999999998647968999749999-99996999999979-999998699
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-45 Score=306.72 Aligned_cols=199 Identities=24% Similarity=0.363 Sum_probs=160.8
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 4147673975999986999957999999973949999700199997933899999-831899826777788999999999
Q 000562 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRETLD 231 (1419)
Q Consensus 153 ~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~-~~~~ayv~Q~d~~~~~lTVrEtL~ 231 (1419)
|+|+.+. ++.++++||||||||||+++|+|.++++ +|+|.+||.++....+ +|.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 72230288873024479789988708999800789998742046503489999999909943234434574578889478
Q 000562 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1419)
Q Consensus 232 Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGQ 311 (1419)
|+.+.. . +.+ .+.+++.+++.+||.+.+|..+. .|||||
T Consensus 93 ~~l~~~--~----------~~~------------------------~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~ 131 (240)
T d2onka1 93 YGLRNV--E----------RVE------------------------RDRRVREMAEKLGIAHLLDRKPA-----RLSGGE 131 (240)
T ss_dssp TTCTTS--C----------HHH------------------------HHHHHHHHHHTTTCTTTTTCCGG-----GSCHHH
T ss_pred HHHCCC--C----------HHH------------------------HHHHHHHHHHHCCCHHHHHCCHH-----HCCHHH
T ss_conf 532336--7----------788------------------------99999999986383756657944-----489999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECC
Q ss_conf 67999999980799484986698899989999999999999861599599998459148985069199972983899728
Q 000562 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1419)
Q Consensus 312 RkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~ivy~Gp 391 (1419)
||||+||+||+.+|++++|||||+|||+.++.++++.++++.+..+.| ++.+.|...++..++|+|++|++|+++.+|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t-vi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP-ILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC-EEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCE-EEEEECCHHHHHHHCCEEEEEECCEEEEEEC
T ss_conf 899999877751677067528655588799999999999998743976-9998189999999699999998999999906
Q ss_pred HHHHHH
Q ss_conf 344999
Q 000562 392 RVSVLD 397 (1419)
Q Consensus 392 ~~~~~~ 397 (1419)
.+++..
T Consensus 211 ~~el~~ 216 (240)
T d2onka1 211 LKELFS 216 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHC
T ss_conf 999832
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=310.44 Aligned_cols=228 Identities=23% Similarity=0.361 Sum_probs=174.6
Q ss_pred CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHH
Q ss_conf 99974799930399999835887789904788999999999987832887540131041476739759999869999579
Q 000562 96 ELPKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKT 175 (1419)
Q Consensus 96 ~~p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKS 175 (1419)
+..+-.++++|+++. ......++|+|+|+.+++|+.++|+||+|||||
T Consensus 11 ~~~~g~I~~~nvsf~--------------------------------Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKS 58 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQ--------------------------------YNDNEAPILKDINLSIEKGETVAFVGMSGGGKS 58 (255)
T ss_dssp CCCSCCEEEEEEEEC--------------------------------SCSSSCCSEEEEEEEECTTCEEEEECSTTSSHH
T ss_pred CCCCCEEEEEEEEEE--------------------------------ECCCCCCCEECEEEEECCCCEEEEECCCCCCHH
T ss_conf 777887999988999--------------------------------599997606443899839989999889998099
Q ss_pred HHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999973949999700199997933899999---831899826777788999999999722302888730244797899
Q 000562 176 TLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARR 252 (1419)
Q Consensus 176 TLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~ 252 (1419)
||+++|+|.+.+. +|+|.++|.++.+... ++.++||+|++++ +..||+|||.|+.... ..+.+.++
T Consensus 59 TLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~Ti~eNi~~g~~~~----~~~~~~~a--- 127 (255)
T d2hyda1 59 TLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNIL-FSDTVKENILLGRPTA----TDEEVVEA--- 127 (255)
T ss_dssp HHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCC-CSSBHHHHHGGGCSSC----CHHHHHHH---
T ss_pred HHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCC-CCCCHHHHHHCCCCCC----CHHHHHHH---
T ss_conf 9999997127863---00015399875307888863414565101568-9987999985158679----99999999---
Q ss_pred HHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 88708999800789998742046503489999999909943234434574578889478679999999807994849866
Q 000562 253 EKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDE 332 (1419)
Q Consensus 253 e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGQRkRvsia~aL~~~~~vlllDE 332 (1419)
+...+. .+ .+..|++..||.+|+.. ..||||||||++|||+++.+|++++|||
T Consensus 128 ------------------l~~~~l-----~~---~i~~lp~gl~t~i~~~g-~~LSgGq~QRi~iARal~~~p~ililDE 180 (255)
T d2hyda1 128 ------------------AKMANA-----HD---FIMNLPQGYDTEVGERG-VKLSGGQKQRLSIARIFLNNPPILILDE 180 (255)
T ss_dssp ------------------HHHTTC-----HH---HHHTSTTGGGCBCCGGG-TTSCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred ------------------HHHHCC-----HH---HHHHCCCCCCCHHCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf ------------------999697-----99---99736242010333888-9849999999999999855998999837
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 98899989999999999999861599599998459148985069199972983899728344999
Q 000562 333 ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 333 pTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~ivy~Gp~~~~~~ 397 (1419)
|||+||..+...|.+.|+.+.+ ++|+|+ +.|... ....+|+|++|++|+++..|+++++++
T Consensus 181 pts~LD~~t~~~i~~~l~~l~~--~~TvI~-itH~~~-~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 181 ATSALDLESESIIQEALDVLSK--DRTTLI-VAHRLS-TITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp TTTTCCHHHHHHHHHHHHHHTT--TSEEEE-ECSSGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHC--CCEEEE-EECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 6544797799999999998753--888999-968999-998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=303.58 Aligned_cols=210 Identities=25% Similarity=0.289 Sum_probs=181.8
Q ss_pred CCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC--CCEEEEECCCCCCCCC
Q ss_conf 54013104147673975999986999957999999973949999700199997933899999--8318998267777889
Q 000562 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP--PRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 146 ~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~--~~~~ayv~Q~d~~~~~ 223 (1419)
.++++|+|+|+.+++||+++|+||||||||||+++|+|.+.++ +|+|.++|.+..+... ++.++||+|++..+++
T Consensus 13 g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ 89 (238)
T d1vpla_ 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRN 89 (238)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTT
T ss_pred CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCC
T ss_conf 9999980625688489799999999999999999996698878---8879998672446839887218675001546878
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999722302888730244797899887089998007899987420465034899999999099432344345745
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~ 303 (1419)
+||+|++.|.+.+.+... .+....++.+++.++|.+-.|..++
T Consensus 90 ltv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~l~~~~~~~~~--- 132 (238)
T d1vpla_ 90 MQGIEYLRFVAGFYASSS----------------------------------SEIEEMVERATEIAGLGEKIKDRVS--- 132 (238)
T ss_dssp SBHHHHHHHHHHHHCCCH----------------------------------HHHHHHHHHHHHHHCCGGGGGSBGG---
T ss_pred CCHHHHHHHHHHHCCCCH----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHH---
T ss_conf 667788898998617998----------------------------------9999999999986797888850453---
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 78889478679999999807994849866988999899999999999998615995999984591489850691999729
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~ 383 (1419)
.+|||||||+++|++|+++|++++|||||+|||..++.+|++.+++++.. + ++|+...|...++..++|+|++|.+
T Consensus 133 --~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g-~tii~~tH~l~~~~~~~drv~vl~~ 208 (238)
T d1vpla_ 133 --TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-G-LTILVSSHNMLEVEFLCDRIALIHN 208 (238)
T ss_dssp --GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEEECCHHHHTTTCSEEEEEET
T ss_pred --HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf --37998989999999986599988733798897989999999999999965-9-9899995989999996999999989
Q ss_pred CEEEEECCHHHHHHHH
Q ss_conf 8389972834499998
Q 000562 384 GQIVYQGPRVSVLDFF 399 (1419)
Q Consensus 384 G~ivy~Gp~~~~~~~F 399 (1419)
|++++.|+++++.+-+
T Consensus 209 G~iv~~g~~~el~~~~ 224 (238)
T d1vpla_ 209 GTIVETGTVEELKERY 224 (238)
T ss_dssp TEEEEEEEHHHHHHHT
T ss_pred CEEEEECCHHHHHHCC
T ss_conf 9999992899998652
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=305.96 Aligned_cols=218 Identities=23% Similarity=0.320 Sum_probs=164.2
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 0131041476739759999869999579999999739499997001999979338999998----318998267777889
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~----~~~ayv~Q~d~~~~~ 223 (1419)
.++|+|||+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|.++....++ +.++|++|+...++.
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 68871217998899799999999984999999997797688---737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999722302888730244797899887089998007899987420465034899999999099432344345745
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1419)
Q Consensus 224 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~ 303 (1419)
+||.||+.+++...+..... ..- .....+ ...+....++.+++.+++.+.+|..+++
T Consensus 94 ltv~enl~~~~~~~~~~~~~-------~~~-~~~~~~-------------~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 150 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLN-------SLF-YKKWIP-------------KEEEMVEKAFKILEFLKLSHLYDRKAGE-- 150 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHH-------HHH-HCSSCC-------------CCHHHHHHHHHHHHHTTCGGGTTSBGGG--
T ss_pred CEEEEEEEEHHHHCCCCCHH-------HHH-HHCCCC-------------CHHHHHHHHHHHHHHCCCCHHCCCCHHH--
T ss_conf 74232143013330345045-------665-421353-------------2899999999998761963020595356--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 78889478679999999807994849866988999899999999999998615995999984591489850691999729
Q 000562 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 304 ~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~ 383 (1419)
|||||||||.||++|+.+|++++|||||+|||..++.+|++.++++.. .+++|+.+.|..+++.+++|+|++|.+
T Consensus 151 ---LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~--~g~til~vsHdl~~~~~~~Drv~vm~~ 225 (254)
T d1g6ha_ 151 ---LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA--KGITFLIIEHRLDIVLNYIDHLYVMFN 225 (254)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH--TTCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred ---CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEEECCHHHHHHHCCEEEEEEC
T ss_conf ---991888899999999759272324397656999999999999999997--899899994769999986999999969
Q ss_pred CEEEEECCHHHHH
Q ss_conf 8389972834499
Q 000562 384 GQIVYQGPRVSVL 396 (1419)
Q Consensus 384 G~ivy~Gp~~~~~ 396 (1419)
|+++..|+.+++.
T Consensus 226 G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 226 GQIIAEGRGEEEI 238 (254)
T ss_dssp TEEEEEEESHHHH
T ss_pred CEEEEEECHHHHH
T ss_conf 9899996689986
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.4e-45 Score=304.09 Aligned_cols=204 Identities=26% Similarity=0.369 Sum_probs=146.4
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC----CEEEEECCCCCCCCC
Q ss_conf 0131041476739759999869999579999999739499997001999979338999998----318998267777889
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP----RTSAYVSQQDWQVAE 223 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~----~~~ayv~Q~d~~~~~ 223 (1419)
.++|+|||+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|.++....++ ..++|++|+..+++.
T Consensus 19 ~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ 95 (240)
T d1ji0a_ 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCC
T ss_conf 88883025788899799999999985999999996788888---038984244344660888887423556765545776
Q ss_pred CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCCCCCCCCC
Q ss_conf 999999997223028887302447978998870899980078999874204650348999999990-9943234434574
Q 000562 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDTCADTLVGDE 302 (1419)
Q Consensus 224 lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~l-gL~~~~dT~VG~~ 302 (1419)
+||+||+.+.+........ .....+.+++.+ +|.+.+|..++
T Consensus 96 ltv~en~~~~~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~l~~~~~~~~~-- 138 (240)
T d1ji0a_ 96 LTVYENLMMGAYNRKDKEG-----------------------------------IKRDLEWIFSLFPRLKERLKQLGG-- 138 (240)
T ss_dssp SBHHHHHHGGGTTCCCSSH-----------------------------------HHHHHHHHHHHCHHHHTTTTSBSS--
T ss_pred CCHHHHHHHHHHHCCCHHH-----------------------------------HHHHHHHHHHHHHCHHHHHHCCHH--
T ss_conf 3699999988873278889-----------------------------------999999999874176888758543--
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEEC
Q ss_conf 57888947867999999980799484986698899989999999999999861599599998459148985069199972
Q 000562 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1419)
Q Consensus 303 ~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~ 382 (1419)
.|||||||||+||++|+.+|++++|||||+|||+.++.+|++.+++++.. +++++.+.|...++..++|+|++|.
T Consensus 139 ---~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~--g~til~~tH~l~~~~~~~drv~vl~ 213 (240)
T d1ji0a_ 139 ---TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE--GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp ---SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred ---HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHCCEEEEEE
T ss_conf ---38999999999999998299874003988679999999999999999968--9989999588999999699999998
Q ss_pred CCEEEEECCHHHHH
Q ss_conf 98389972834499
Q 000562 383 EGQIVYQGPRVSVL 396 (1419)
Q Consensus 383 ~G~ivy~Gp~~~~~ 396 (1419)
+|++++.|+++++.
T Consensus 214 ~G~iv~~g~~~el~ 227 (240)
T d1ji0a_ 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEECCHHHHH
T ss_conf 99999984899984
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7e-45 Score=300.76 Aligned_cols=207 Identities=21% Similarity=0.218 Sum_probs=134.4
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC----------------CCEE
Q ss_conf 013104147673975999986999957999999973949999700199997933899999----------------8318
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----------------PRTS 211 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~----------------~~~~ 211 (1419)
..+|+|||+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|.++....+ ++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf 99826777788999999999722302888730244797899887089998007899987420465034899999999099
Q 000562 212 AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL 291 (1419)
Q Consensus 212 ayv~Q~d~~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL 291 (1419)
+||+|++.+++.+||.||+.|+........ +. +....++.+++.+||
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~~---------~~------------------------~~~~~~~~~l~~~~l 138 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS---------KH------------------------DARERALKYLAKVGI 138 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC---------HH------------------------HHHHHHHHHHHHTTC
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCCC---------HH------------------------HHHHHHHHHHHHCCC
T ss_conf 899833231411010213656578762999---------89------------------------999999999998299
Q ss_pred CCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHH
Q ss_conf 432-3443457457888947867999999980799484986698899989999999999999861599599998459148
Q 000562 292 DTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1419)
Q Consensus 292 ~~~-~dT~VG~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e 370 (1419)
.+- .|... ..|||||||||+||++|+.+|+++++||||+|||..++.+|++.++++.+ .+ ++++.+.|...+
T Consensus 139 ~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g-~til~vtHdl~~ 211 (258)
T d1b0ua_ 139 DERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EG-KTMVVVTHEMGF 211 (258)
T ss_dssp CHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TT-CCEEEECSCHHH
T ss_pred CHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CC-CCEEEEECCHHH
T ss_conf 524430682-----20567788898999998439987885245556887888899876554103-68-833899489999
Q ss_pred HHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 985069199972983899728344999
Q 000562 371 AYELFDDVILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 371 ~~~lfD~IilL~~G~ivy~Gp~~~~~~ 397 (1419)
+..++|+|++|.+|++++.|+++++..
T Consensus 212 ~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 212 ARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 998699999997999999849999983
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=304.09 Aligned_cols=227 Identities=23% Similarity=0.373 Sum_probs=175.7
Q ss_pred CCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHH
Q ss_conf 97479993039999983588778990478899999999998783288754013104147673975999986999957999
Q 000562 98 PKIEVRFQNLTVESFVHLGSRALPTIPNFIFNMTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTL 177 (1419)
Q Consensus 98 p~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTL 177 (1419)
++-+++|+|+++. ....+.++|+|+|+.+++|+.++|+||||||||||
T Consensus 10 ~~g~I~~~nvsf~--------------------------------Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTL 57 (253)
T d3b60a1 10 ATGDLEFRNVTFT--------------------------------YPGREVPALRNINLKIPAGKTVALVGRSGSGKSTI 57 (253)
T ss_dssp CCCCEEEEEEEEC--------------------------------SSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHH
T ss_pred CCEEEEEEEEEEE--------------------------------ECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHH
T ss_conf 8307999988999--------------------------------29999763533289985999999999999859999
Q ss_pred HHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999973949999700199997933899999---83189982677778899999999972230288873024479789988
Q 000562 178 LLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREK 254 (1419)
Q Consensus 178 L~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~~~lTVrEtL~Faa~~~~~~~~~~~~~~~~~~e~ 254 (1419)
+++|+|.+++. +|+|.++|.++.+... ++.++||+|++. +...|+++|+.|+.... ...+.+.+++
T Consensus 58 l~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~-l~~~ti~~n~~~~~~~~---~~~~~i~~a~---- 126 (253)
T d3b60a1 58 ASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVH-LFNDTVANNIAYARTEE---YSREQIEEAA---- 126 (253)
T ss_dssp HHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCC-CCSSBHHHHHHTTTTSC---CCHHHHHHHH----
T ss_pred HHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCC-CCCCCHHHHHHHCCCCC---CCHHHHHHHH----
T ss_conf 99986216888---4689878801211106654206879950254-47862024332057220---8999999999----
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 70899980078999874204650348999999990994323443457457888947867999999980799484986698
Q 000562 255 IAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEIS 334 (1419)
Q Consensus 255 ~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLSGGQRkRvsia~aL~~~~~vlllDEpT 334 (1419)
...+. .+ . +-.|++..||.+|+. ...|||||||||+|||||+.+|++++|||||
T Consensus 127 -----------------~~~~l-----~~-~--i~~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ililDEpt 180 (253)
T d3b60a1 127 -----------------RMAYA-----MD-F--INKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEAT 180 (253)
T ss_dssp -----------------HTTTC-----HH-H--HHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred -----------------HHHHH-----HH-H--HHHCCCCCHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf -----------------99817-----99-9--973554410143488-8984999999999999995499889951644
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 899989999999999999861599599998459148985069199972983899728344999
Q 000562 335 NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397 (1419)
Q Consensus 335 sGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~ivy~Gp~~~~~~ 397 (1419)
|+||..++..|++.|+++.+ ++|+++ +.|... ....+|+|++|.+|+++.+|++++++.
T Consensus 181 s~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~-~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 181 SALDTESERAIQAALDELQK--NRTSLV-IAHRLS-TIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp SSCCHHHHHHHHHHHHHHHT--TSEEEE-ECSCGG-GTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHH-HHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 45898899999999987522--788999-988799-998599999998999999889999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=303.97 Aligned_cols=206 Identities=25% Similarity=0.304 Sum_probs=178.9
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC----CCCCEEEEECCCCCCCCC
Q ss_conf 5056210036874882999975799994679975709988963888999979027700----112358997258878998
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----TFARISGYCEQNDIHSPG 916 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~----~~~~~~gyv~Q~d~~~~~ 916 (1419)
..++|+|||+.+++||++||+||||||||||+++|+|..+ +.+|+|.++|.+.... ..++.++|++|+...++.
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ 93 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 93 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 9688712179988997999999999849999999977976--88737999999664056999998338725776424788
Q ss_pred CCHHHHHHHHHHHCCC----------CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 3399999998661299----------978599999999999999199653377323788888899999999999999629
Q 000562 917 LTVLESLLFSAWLRLP----------SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1419)
Q Consensus 917 lTv~E~L~f~a~lr~~----------~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~ 986 (1419)
+||+|++.+.+..+.. .....++..+.++++++.+++.+..+..++ .||||||||+.||++|+.+
T Consensus 94 ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~ 168 (254)
T d1g6ha_ 94 MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTN 168 (254)
T ss_dssp SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHHHHHHHC
T ss_conf 74232143013330345045665421353289999999999876196302059535-----6991888899999999759
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 995104099999999999999999999986599899991687778997317498990697999937999
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 987 p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~g 1055 (1419)
|++|+|||||+|||+.++..+++.++++++.|.||++++|+.. ++.+.+|++++|.+ |+++..|+..
T Consensus 169 P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~~-G~iv~~g~~~ 235 (254)
T d1g6ha_ 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 235 (254)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECHH
T ss_conf 2723243976569999999999999999978998999947699-99986999999969-9899996689
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4.2e-45 Score=301.57 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=179.4
Q ss_pred CEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 11376052024631310012354444505621003687488299997579999467997570998896388899997902
Q 000562 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1419)
Q Consensus 815 ~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~ 894 (1419)
.-++.+|++... +...+|+|||+.+++||+++|+||||||||||+++|+|... +.+|+|.++|.+
T Consensus 5 ~~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~--p~~G~I~~~G~~ 69 (240)
T d1ji0a_ 5 IVLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQD 69 (240)
T ss_dssp EEEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEE
T ss_pred EEEEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCCC
T ss_conf 079996189998-------------99888830257888997999999999859999999967888--880389842443
Q ss_pred CCCC---CC-CCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7700---11-235899725887899833999999986612999785999999999999991-996533773237888888
Q 000562 895 KRQE---TF-ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV-ELTSLSGALIGLPGINGL 969 (1419)
Q Consensus 895 ~~~~---~~-~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~gl 969 (1419)
.... .. +..++|++|+..+++.+||+|++.+.+..+.+. +..++.++++++.+ ++.+..+..++ .|
T Consensus 70 i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-----~L 140 (240)
T d1ji0a_ 70 ITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQLGG-----TL 140 (240)
T ss_dssp CTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSBSS-----SS
T ss_pred CCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHCHHHHHHCCHH-----HC
T ss_conf 4466088888742355676554577636999999888732788----89999999999874176888758543-----38
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEE
Q ss_conf 99999999999999629995104099999999999999999999986599899991687778997317498990697999
Q 000562 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1419)
Q Consensus 970 SgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~v 1049 (1419)
|||||||+.||++|+.+|++|+|||||+|||+.+...+++.++++++.|.||++++|+.. ++.+.+|++++|.+ |+++
T Consensus 141 SGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~~-G~iv 218 (240)
T d1ji0a_ 141 SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIV 218 (240)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEE
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEE
T ss_conf 999999999999998299874003988679999999999999999968998999958899-99996999999989-9999
Q ss_pred EECCCC
Q ss_conf 937999
Q 000562 1050 YAGPLG 1055 (1419)
Q Consensus 1050 y~G~~g 1055 (1419)
+.|++.
T Consensus 219 ~~g~~~ 224 (240)
T d1ji0a_ 219 LEGKAS 224 (240)
T ss_dssp EEEEHH
T ss_pred EECCHH
T ss_conf 984899
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.5e-44 Score=298.42 Aligned_cols=203 Identities=23% Similarity=0.309 Sum_probs=176.6
Q ss_pred CEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCC----------------CCCCEE
Q ss_conf 5056210036874882999975799994679975709988963888999979027700----------------112358
Q 000562 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE----------------TFARIS 904 (1419)
Q Consensus 841 ~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~----------------~~~~~~ 904 (1419)
..++|+|||+.+++||++||+|+||||||||+++|+|..+ +.+|+|.++|.+.... ..++.+
T Consensus 14 ~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 9998815066886997999998999829999999974766--78997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9972588789983399999998661299978599999999999999199653-377323788888899999999999999
Q 000562 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVEL 983 (1419)
Q Consensus 905 gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~~vg~~~~~glSgGqrkrl~ia~~L 983 (1419)
|||+|+..+.|.+||+|++.|...... ..+..+.++.+.++++.++|.+. .+..+ ..|||||+||++||++|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~p-----~~LSGG~~QRv~iAraL 164 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVSIARAL 164 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHC--CCCHHHHHHHHHHHHHHCCCCHHHHCCCC-----CCCCHHHHHHHHHHHHH
T ss_conf 899833231411010213656578762--99989999999999998299524430682-----20567788898999998
Q ss_pred HHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 62999510409999999999999999999998659989999168777899731749899069799993799
Q 000562 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 984 ~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
+.+|++|++||||+|||+.+...|++.++++.+.|.|||+++|++. ++...+|++++|.+ |+++..|++
T Consensus 165 ~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri~vm~~-G~iv~~g~~ 233 (258)
T d1b0ua_ 165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDP 233 (258)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEEEEEEC-CEEEEECCH
T ss_conf 4399878852455568878888998765541036883389948999-99986999999979-999998499
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=309.18 Aligned_cols=209 Identities=23% Similarity=0.320 Sum_probs=165.1
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 013104147673975999986999957999999973949999700199997933899999---83189982677778899
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~---~~~~ayv~Q~d~~~~~l 224 (1419)
.++|+|||+.++||+.++|+||||||||||+++|+|.+.|. +|+|.+||.++.+... ++.++||+|++.+++ .
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCC-C
T ss_conf 84142258998599999999999997999999999960989---8779889988442467888743679756654578-5
Q ss_pred CHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999997223028887302447978998870899980078999874204650348999999990994323443457457
Q 000562 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1419)
Q Consensus 225 TVrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~ 304 (1419)
||+||+.++...... .+.+.+.. +..+. .-....+++..||.+|+.+
T Consensus 91 ti~eNi~~~~~~~~~---~~~~~~~~---~~~~~--------------------------~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT---DEDLWQVL---DLAFA--------------------------RSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp EHHHHTTSCTTSCSC---HHHHHHHH---HHHTC--------------------------TTTTTSSTTGGGCEESTTS-
T ss_pred CHHHHEECCCCCCCC---HHHHHHHH---HHHHH--------------------------HHHHCCCCCCCCCCCCCCC-
T ss_conf 345430124455542---35677899---99975--------------------------5542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCC
Q ss_conf 88894786799999998079948498669889998999999999999986159959999845914898506919997298
Q 000562 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1419)
Q Consensus 305 rgLSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G 384 (1419)
..|||||||||+|||||+.+|++++||||||+||+.++.+|++.|+++.+ ++|+++ +.|....+ ..+|+|++|++|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~-itH~l~~~-~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLV-IAHRLSTI-VDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEE-ECCSHHHH-HHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEE-EECCHHHH-HHCCEEEEEECC
T ss_conf 98799999999999998529989996588655698899999887888717--998999-97879999-849999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 3899728344999
Q 000562 385 QIVYQGPRVSVLD 397 (1419)
Q Consensus 385 ~ivy~Gp~~~~~~ 397 (1419)
+++++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999999999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.2e-44 Score=297.32 Aligned_cols=193 Identities=24% Similarity=0.368 Sum_probs=171.8
Q ss_pred CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 003687488299997579999467997570998896388899997902770-0112358997258878998339999999
Q 000562 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1419)
Q Consensus 847 ~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~L~f 925 (1419)
|+|+.+. +|.++|+||||||||||+++|+|... +.+|+|.+||.+... ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~--p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCC--CCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-97999997999809999999973999--89628999999988699899285225231443522015576665
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHH
Q ss_conf 86612999785999999999999991996533773237888888999999999999996299951040999999999999
Q 000562 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1419)
Q Consensus 926 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~ 1005 (1419)
.. + ..+..+++++++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~-----~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCH-----HHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---3677889999999998638375665794-----448999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 999999999865-9989999168777899731749899069799993799
Q 000562 1006 IVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 1006 ~i~~~lr~l~~~-g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
.+++.++++.+. |.|||+++|++. ++.+.+|++++|.+ |+++..|.+
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~~-G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEEC-CEEEEEECH
T ss_conf 9999999998743976999818999-99996999999989-999999069
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.8e-45 Score=299.67 Aligned_cols=210 Identities=27% Similarity=0.445 Sum_probs=168.7
Q ss_pred EEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 37605202463131001235444450562100368748829999757999946799757099889638889999790277
Q 000562 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1419)
Q Consensus 817 ~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~ 896 (1419)
++|+|+++..+ .+...+|+|||+.+++|+.+||+|+||||||||+++|.|... +.+|+|.+||.+..
T Consensus 2 I~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEEC-----------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCEEEECCEEEC
T ss_conf 29999999908-----------999603742489984999999999999989999999973578--88889999999944
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCCC
Q ss_conf 0---01123589972588789983399999998661299978599999999999999199-------6533773237888
Q 000562 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-------TSLSGALIGLPGI 966 (1419)
Q Consensus 897 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~~ 966 (1419)
. ..+++.++||+|++.+++ .|++|++.|.. .....++ ++++.+..++ ..-.++.+|..+
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g- 137 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG- 137 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT-
T ss_pred CCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC-
T ss_conf 0024655352889824465578-40003522357-----5543888----99999997557888763201344327878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 88899999999999999629995104099999999999999999999986599899991687778997317498990697
Q 000562 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1419)
Q Consensus 967 ~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG 1046 (1419)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|. +|
T Consensus 138 ~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (241)
T d2pmka1 138 AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-KG 213 (241)
T ss_dssp TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 8669889898754434441651355647765559899999999999985-8998999978899--998499999998-99
Q ss_pred EEEEECCC
Q ss_conf 99993799
Q 000562 1047 ELIYAGPL 1054 (1419)
Q Consensus 1047 ~~vy~G~~ 1054 (1419)
+++..|+.
T Consensus 214 ~Iv~~G~~ 221 (241)
T d2pmka1 214 KIVEQGKH 221 (241)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.1e-44 Score=294.06 Aligned_cols=216 Identities=21% Similarity=0.306 Sum_probs=170.9
Q ss_pred EEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 13760520246313100123544445056210036874882999975799994679975709988963888999979027
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~ 895 (1419)
.+.++|+++..+. .....+|+|+|+.+++||++||+|+||||||||+++|.|... +.+|+|.+||.+.
T Consensus 11 ~I~~~nvsf~Y~~----------~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~--p~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPN----------RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTT----------STTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred EEEEEEEEEECCC----------CCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCEEC
T ss_conf 6999998998899----------999976744389984998999999999849999999861437--8768998899853
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 70---01123589972588789983399999998661299978599999-----99999999919965337732378888
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR-----AFVEEVMELVELTSLSGALIGLPGIN 967 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l~L~~~~~~~vg~~~~~ 967 (1419)
.. ..+++.++||+|++.+++ .||+|++.|.... ........ ....+.++ .|.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-6346554542101----302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 8899999999999999629995104099999999999999999999986-599899991687778997317498990697
Q 000562 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1419)
Q Consensus 968 glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG 1046 (1419)
.||||||||++|||+|+.+|+|++||||||+||+.+...|++.|+++.+ .++|||+++|++ +..+.+|++++|++ |
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~~-G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLEG-G 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEET-T
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEEC-C
T ss_conf 68954704899860445687078716757656853689999999997650698999995979--99985999999989-9
Q ss_pred EEEEECCC
Q ss_conf 99993799
Q 000562 1047 ELIYAGPL 1054 (1419)
Q Consensus 1047 ~~vy~G~~ 1054 (1419)
+++..|+.
T Consensus 228 ~iv~~Gt~ 235 (251)
T d1jj7a_ 228 AIREGGTH 235 (251)
T ss_dssp EEEEEECH
T ss_pred EEEEECCH
T ss_conf 99998899
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.8e-45 Score=302.57 Aligned_cols=210 Identities=27% Similarity=0.438 Sum_probs=168.1
Q ss_pred EEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCC
Q ss_conf 37605202463131001235444450562100368748829999757999946799757099889638889999790277
Q 000562 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1419)
Q Consensus 817 ~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~ 896 (1419)
++++|+++..+ +.+.+|+|||+.++||+++||+||||||||||+++|+|... +.+|+|.+||.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHC--CCCCEEEECCEEEC
T ss_conf 79998899879------------99841422589985999999999999979999999999609--89877988998844
Q ss_pred C---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCCCC
Q ss_conf 0---0112358997258878998339999999866129997859999999999999919965-------33773237888
Q 000562 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLPGI 966 (1419)
Q Consensus 897 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~~~ 966 (1419)
. ..+++.++||+|++.+++. |++|++.+... .....+ .+++.++..++.. ..++.+|..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDE----DLWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHH----HHHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHH----HHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----554235----677899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCC
Q ss_conf 88899999999999999629995104099999999999999999999986599899991687778997317498990697
Q 000562 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1419)
Q Consensus 967 ~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG 1046 (1419)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. .|+|||+++|+++ ....+|++++|+ +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--998499999998-99
Q ss_pred EEEEECCC
Q ss_conf 99993799
Q 000562 1047 ELIYAGPL 1054 (1419)
Q Consensus 1047 ~~vy~G~~ 1054 (1419)
+++..|+.
T Consensus 214 ~iv~~G~~ 221 (242)
T d1mv5a_ 214 QITGSGKH 221 (242)
T ss_dssp EECCCSCH
T ss_pred EEEEECCH
T ss_conf 99999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.1e-43 Score=287.67 Aligned_cols=212 Identities=25% Similarity=0.349 Sum_probs=169.9
Q ss_pred EEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 13760520246313100123544445056210036874882999975799994679975709988963888999979027
Q 000562 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1419)
Q Consensus 816 ~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~ 895 (1419)
.+.++|+++..+. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.+||.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCCCC
T ss_conf 7999988999299-----------99763533289985999999999999859999999862168--8846898788012
Q ss_pred CC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 70---01123589972588789983399999998661299978599999999999999199653-------377323788
Q 000562 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1419)
Q Consensus 896 ~~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~ 965 (1419)
.. ..+++.++||+|++.++. .|+++++.+.. +...+.+ .++++++..++.+. .++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLFN-DTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 11106654206879950254478-62024332057----2208999----99999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECC
Q ss_conf 88889999999999999962999510409999999999999999999998659989999168777899731749899069
Q 000562 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1419)
Q Consensus 966 ~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~g 1045 (1419)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.|+++. .++|||+++|+++ ..+.+|+|++|.+
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~~- 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVED- 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEET-
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEEC-
T ss_conf 89849999999999999954998899516444589889999999998752-2788999988799--9985999999989-
Q ss_pred CEEEEECCC
Q ss_conf 799993799
Q 000562 1046 GELIYAGPL 1054 (1419)
Q Consensus 1046 G~~vy~G~~ 1054 (1419)
|+++..|+.
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=8.1e-44 Score=293.68 Aligned_cols=212 Identities=25% Similarity=0.392 Sum_probs=172.7
Q ss_pred CEEEECCCEEEEECCCCCCCCCCCCCCEEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 11376052024631310012354444505621003687488299997579999467997570998896388899997902
Q 000562 815 LSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1419)
Q Consensus 815 ~~~~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~ 894 (1419)
-.+.++|+++..+. ....+|+|||+.+++|+.+||+|+||||||||+++|+|... +.+|+|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEE
T ss_pred CEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEE
T ss_conf 87999988999599-----------99760644389983998999988999809999999971278--630001539987
Q ss_pred CCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCCC
Q ss_conf 770---0112358997258878998339999999866129997859999999999999919965-------337732378
Q 000562 895 KRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-------LSGALIGLP 964 (1419)
Q Consensus 895 ~~~---~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~~ 964 (1419)
... ..+++.++||+|++.+++ .||+|++.|.. + ....+ .++++++..++.+ -.++.+|..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~----~-~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGR----P-TATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGC----S-SCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCC----C-CCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 530788886341456510156899-87999985158----6-79999----99999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEEC
Q ss_conf 88888999999999999996299951040999999999999999999999865998999916877789973174989906
Q 000562 965 GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1419)
Q Consensus 965 ~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~ 1044 (1419)
+ ..||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|+
T Consensus 152 g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~- 226 (255)
T d2hyda1 152 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE- 226 (255)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-
T ss_conf 8-9849999999999999855998999837654479779999999999875-3888999968999--998599999998-
Q ss_pred CCEEEEECCC
Q ss_conf 9799993799
Q 000562 1045 GGELIYAGPL 1054 (1419)
Q Consensus 1045 gG~~vy~G~~ 1054 (1419)
+|+++..|+.
T Consensus 227 ~G~iv~~G~~ 236 (255)
T d2hyda1 227 NGHIVETGTH 236 (255)
T ss_dssp TTEEEEEECH
T ss_pred CCEEEEECCH
T ss_conf 9999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-43 Score=290.21 Aligned_cols=198 Identities=21% Similarity=0.340 Sum_probs=156.7
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 01310414767397599998699995799999997394999970019999793389999983189982677778899999
Q 000562 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1419)
Q Consensus 148 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d~~~~~lTVr 227 (1419)
.++|+|+|+.+++|++++|+||||||||||+++|+|.+++. +|+|.++| .++|++|++++++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430267-6032
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99997223028887302447978998870899980078999874204650348999999990994323443457457888
Q 000562 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1419)
Q Consensus 228 EtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgL 307 (1419)
||+.|+.... ..+++.+ . +. .+....+..+.+..||.+|+.. ..|
T Consensus 115 eni~~~~~~~--~~~~~~~---~------------------~~-----------~~~~~~i~~l~~~~~~~~~~~~-~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--EYRYKSV---V------------------KA-----------CQLQQDITKFAEQDNTVLGEGG-VTL 159 (281)
T ss_dssp HHHTTTSCCC--HHHHHHH---H------------------HH-----------TTCHHHHTTSTTGGGCEECTTC-TTS
T ss_pred CCCCCCCCCC--CHHHHHH---H------------------HH-----------HHHHHHHHHCHHHHHHHHHHHC-CCC
T ss_conf 1420333456--0579999---9------------------99-----------7769999846123323555542-377
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCEEE
Q ss_conf 94786799999998079948498669889998999999999999986159959999845914898506919997298389
Q 000562 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1419)
Q Consensus 308 SGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~iv 387 (1419)
||||||||++||+|+.+|++++|||||++||+.+..+|++.+..... .++|+|+ +.|.. +....+|+|++|.+|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~-itH~~-~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRIL-VTSKM-EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEE-ECSCH-HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEE-EECHH-HHHHHCCEEEEEECCEEE
T ss_conf 99999999999999869635133385544898999999999998862-8999999-92528-999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9728344999
Q 000562 388 YQGPRVSVLD 397 (1419)
Q Consensus 388 y~Gp~~~~~~ 397 (1419)
++|+.+++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-40 Score=273.72 Aligned_cols=191 Identities=22% Similarity=0.370 Sum_probs=151.1
Q ss_pred EEEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 05621003687488299997579999467997570998896388899997902770011235899725887899833999
Q 000562 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 842 ~~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
.++|+|+|+.+++|+++||+||||||||||+++|+|... +.+|.|.++|. ++||+|+..+++. ||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~----------i~~v~Q~~~l~~~-tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSGR----------VSFCSQFSWIMPG-TIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEECCSC----------EEEECSSCCCCSE-EHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE----------EEEEECCCCCCCC-EEEC
T ss_conf 767737599985999999998999829999999957974--78828999999----------9998164302676-0321
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHH---HHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf 99998661299978599999999---999999199653377323788888899999999999999629995104099999
Q 000562 922 SLLFSAWLRLPSEIELETQRAFV---EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1419)
Q Consensus 922 ~L~f~a~lr~~~~~~~~~~~~~v---~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsG 998 (1419)
++.|... .......... ........+.+..++.++..+ ..||||||||++||++|+.+|+||+|||||++
T Consensus 116 ni~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 116 NIIFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp HHTTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred CCCCCCC------CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCC
T ss_conf 4203334------5605799999997769999846123323555542-37799999999999999869635133385544
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 999999999999999986599899991687778997317498990697999937999
Q 000562 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 999 LD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~g 1055 (1419)
||+.+...+++.+......++|+|+++|++ +....+|++++|.+ |+++++|+..
T Consensus 189 LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~~-G~i~~~Gt~~ 242 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILHQ-GSSYFYGTFS 242 (281)
T ss_dssp SCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEEC-CEEEEECCHH
T ss_conf 898999999999998862899999992528--99985999999989-9999987899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-40 Score=270.24 Aligned_cols=193 Identities=24% Similarity=0.380 Sum_probs=128.4
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 621003687488299997579999467997570998896388899997902770---01123589972588789983399
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVL 920 (1419)
Q Consensus 844 iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 920 (1419)
.|++||+.+++||++||+||||||||||+++|+|..+ .+|+|.++|.+... ...++..+|++|........++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCCCEEE
Q ss_conf 99999866129997859999999999999919965337732378888889999999999999962-------99951040
Q 000562 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA-------NPSIVFMD 993 (1419)
Q Consensus 921 E~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~-------~p~il~lD 993 (1419)
+.+.+...- +.+.+.++++++.+++.+..+..+ +.||||||||++||++|+. +|+||+||
T Consensus 91 ~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~-----~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCSC--------TTCHHHHHHHHHHTTCTTTTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCCH--------HHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 876410014--------668999999998659876767684-----4569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 9999999999999999999998659989999168777899731749899069799993799
Q 000562 994 EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1419)
Q Consensus 994 EPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~ 1054 (1419)
|||+|||+.+...+++.++++++.|.|||+++|++. ++.+.+|++++|+ +|++++.|+.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~ 216 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRR 216 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 877778989999999999999867999999967799-9999799999997-9989998899
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-39 Score=266.33 Aligned_cols=198 Identities=25% Similarity=0.356 Sum_probs=166.6
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCC---CEEEEECCCCCCCCCCC
Q ss_conf 131041476739759999869999579999999739499997001999979338999998---31899826777788999
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPP---RTSAYVSQQDWQVAEMT 225 (1419)
Q Consensus 149 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~---~~~ayv~Q~d~~~~~lT 225 (1419)
+.|+|+|+.+++||+++|+||||||||||+++|+|.. +. +|+|.++|.++....++ ...+|++|+.......+
T Consensus 13 ~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
T d1l7vc_ 13 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 88 (231)
T ss_dssp TTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCB
T ss_pred CEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCC
T ss_conf 1555888899489899999899980999999994887-99---5599999999986998999864024512135774420
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 99999972230288873024479789988708999800789998742046503489999999909943234434574578
Q 000562 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1419)
Q Consensus 226 VrEtL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~r 305 (1419)
+.+++.+...-+ .....++.+++.++|++..+..++
T Consensus 89 v~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~~~~~~~----- 124 (231)
T d1l7vc_ 89 VWHYLTLHQHDK---------------------------------------TRTELLNDVAGALALDDKLGRSTN----- 124 (231)
T ss_dssp HHHHHHHHCSCT---------------------------------------TCHHHHHHHHHHTTCTTTTTSBGG-----
T ss_pred HHHHHHHCCCHH---------------------------------------HHHHHHHHHHHHCCCHHHHCCCHH-----
T ss_conf 988764100146---------------------------------------689999999986598767676844-----
Q ss_pred CCCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEE
Q ss_conf 889478679999999807-------9948498669889998999999999999986159959999845914898506919
Q 000562 306 GISGGQKKRLTTGELLVG-------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1419)
Q Consensus 306 gLSGGQRkRvsia~aL~~-------~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~I 378 (1419)
.|||||||||++|++++. +|++++|||||+|||..++..+.+.+++++. . +++|+.+.|...++.+++|+|
T Consensus 125 ~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~-g~tii~vtHdl~~~~~~~dri 202 (231)
T d1l7vc_ 125 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-Q-GLAIVMSSHDLNHTLRHAHRA 202 (231)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-T-TCEEEECCCCHHHHHHHCSBC
T ss_pred HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-C-CCEEEEEECCHHHHHHHCCEE
T ss_conf 56998899999999998517133899889997187777898999999999999986-7-999999967799999979999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997298389972834499
Q 000562 379 ILLSEGQIVYQGPRVSVL 396 (1419)
Q Consensus 379 ilL~~G~ivy~Gp~~~~~ 396 (1419)
++|.+|++++.|+++++.
T Consensus 203 ~vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 203 WLLKGGKMLASGRREEVL 220 (231)
T ss_dssp CBEETTEECCCSBHHHHS
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.5e-36 Score=247.23 Aligned_cols=182 Identities=20% Similarity=0.281 Sum_probs=107.7
Q ss_pred EEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHH
Q ss_conf 56210036874882999975799994679975709988963888999979027700112358997258878998339999
Q 000562 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1419)
Q Consensus 843 ~iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 922 (1419)
.+|+|+|+.+++|++++|+||||||||||+++|+|..+ +.+|+|.+||.+... .+..++|++|+..+...+|++|.
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~--p~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHH
T ss_conf 28842088985998999999999719999999966205--677889999896267--36708999501357888289999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH
Q ss_conf 99986612999785999999999999991996533773237888888999999999999996299951040999999999
Q 000562 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1419)
Q Consensus 923 L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~ 1002 (1419)
+.+.+.++... ... ..+.+.++.+++.+... .+ ..||+|||||+.||++|+.+|++++|||||+|||..
T Consensus 91 l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~-~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~ 159 (200)
T d1sgwa_ 91 LKAVASLYGVK-VNK----NEIMDALESVEVLDLKK-KL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159 (200)
T ss_dssp HHHHHHHTTCC-CCH----HHHHHHHHHTTCCCTTS-BG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHHHHHCCCC-CCH----HHHHHHHHHCCCCCCCC-CC-----CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 99999754886-379----99999998748856301-26-----868971888899999886499899986862016999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 99999999999986599899991687778997317498990
Q 000562 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1419)
Q Consensus 1003 ~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~ 1043 (1419)
++..+++.++++.+.+.++|+++|+. ++.+|.+..|.
T Consensus 160 ~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~ 196 (200)
T d1sgwa_ 160 SKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLH 196 (200)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEE
T ss_conf 99999999999986799999999162----54416123401
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=5.1e-37 Score=250.25 Aligned_cols=183 Identities=19% Similarity=0.253 Sum_probs=149.7
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 13104147673975999986999957999999973949999700199997933899999831899826777788999999
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1419)
Q Consensus 149 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d~~~~~lTVrE 228 (1419)
++|+|+|+.+++|++++|+||||||||||+++|+|.++|. +|+|.+||.++.+ .++.++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---7889999896267--3670899950135788828999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99972230288873024479789988708999800789998742046503489999999909943234434574578889
Q 000562 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1419)
Q Consensus 229 tL~Faa~~~~~~~~~~~~~~~~~~e~~~~i~p~~did~~~~a~~~~~~~~~~~vd~il~~lgL~~~~dT~VG~~~~rgLS 308 (1419)
++.+.+...+..... ..+...++.+++.+.. ..++ .||
T Consensus 90 ~l~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~~~-~~~~-----~LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVNK------------------------------------NEIMDALESVEVLDLK-KKLG-----ELS 127 (200)
T ss_dssp HHHHHHHHTTCCCCH------------------------------------HHHHHHHHHTTCCCTT-SBGG-----GSC
T ss_pred HHHHHHHHCCCCCCH------------------------------------HHHHHHHHHCCCCCCC-CCCC-----CCC
T ss_conf 999999754886379------------------------------------9999999874885630-1268-----689
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECC
Q ss_conf 478679999999807994849866988999899999999999998615995999984591489850691999729
Q 000562 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1419)
Q Consensus 309 GGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~ 383 (1419)
||||||+.+|++++.+|++++|||||+|||..++..+++.+++..+. +++++++.+|.. +++|.+..|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~-~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HSEEEEEESSCC----TTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEECHH----HHCCHHHHEEE
T ss_conf 71888899999886499899986862016999999999999999867-999999991625----44161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.35 E-value=1.4e-14 Score=106.89 Aligned_cols=79 Identities=10% Similarity=0.035 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEEECCCEE
Q ss_conf 89478679999999807994849866988999899999999999998615995999984591489850691999729838
Q 000562 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1419)
Q Consensus 307 LSGGQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~IilL~~G~i 386 (1419)
+++|+++|..+++++...|+++++|||.... .........+.+.....+.+++++.|+. +...+.|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--HHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEE
T ss_conf 5320137899999974099742302777310--0457999999987505797899997447--78986365998719999
Q ss_pred EEE
Q ss_conf 997
Q 000562 387 VYQ 389 (1419)
Q Consensus 387 vy~ 389 (1419)
+.-
T Consensus 158 ~~v 160 (178)
T d1ye8a1 158 IEL 160 (178)
T ss_dssp EEC
T ss_pred EEE
T ss_conf 998
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.29 E-value=2.9e-13 Score=98.54 Aligned_cols=159 Identities=14% Similarity=0.067 Sum_probs=94.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECC--CCCCCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 99997579999467997570998896388899997902770011235899725--887899833999999986612999-
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQ--NDIHSPGLTVLESLLFSAWLRLPS- 933 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q--~d~~~~~lTv~E~L~f~a~lr~~~- 933 (1419)
+++|.||||||||||+++++|... ...|.+.+.+.+......+ .+|..+ .+....... +...+ ..+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~--~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~ 73 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEVRDPETKKR--TGFRIITTEGKKKIFSS--KFFTS--KKLVGSY 73 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEEEEEC------C--CEEEEEETTCCEEEEEE--TTCCC--SSEETTE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCC--CCCCEEEECCCCHHHHHHH--HHHHHHHHHHHHHHHHH--HHHHH--HHHHHHH
T ss_conf 899998999389999999981488--8864699877132888876--53112336677788754--11345--5443023
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf 78599999999999999199653377323788888899999999999999629995104099999999999999999999
Q 000562 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1419)
Q Consensus 934 ~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~ 1013 (1419)
.... ....+++|++++..++.++..+|+++++|||+...+ .....+..+.+
T Consensus 74 ~~~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~ 124 (178)
T d1ye8a1 74 GVNV---------------------------QYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQ 124 (178)
T ss_dssp EECH---------------------------HHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHH
T ss_pred HCCC---------------------------CHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHH
T ss_conf 0376---------------------------256653201378999999740997423027773100--45799999998
Q ss_pred HHH-CCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCC
Q ss_conf 986-599899991687778997317498990697999937999
Q 000562 1014 IVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1419)
Q Consensus 1014 l~~-~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~g 1055 (1419)
+.+ .+.+++.+.|+.. .....|++..+. +|+++.-++..
T Consensus 125 ~l~~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~n 164 (178)
T d1ye8a1 125 IMHDPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPEN 164 (178)
T ss_dssp HHTCTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTTT
T ss_pred HHCCCCCEEEEEECCHH--HHHHHCEEEEEE-CCEEEEECCCC
T ss_conf 75057978999974477--898636599871-99999989964
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.05 E-value=6.8e-09 Score=70.60 Aligned_cols=71 Identities=20% Similarity=0.182 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHH----HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEE
Q ss_conf 88999999999999996----299951040999999999999999999999865998999916877789973174989
Q 000562 968 GLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF 1041 (1419)
Q Consensus 968 glSgGqrkrl~ia~~L~----~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~ill 1041 (1419)
.+|.|||+...++..+. .++++++.|||-++|++.....+.+.|+..++ +.-|++|+|.| ++++.+|++..
T Consensus 219 ~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCT--TGGGGCSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCH--HHHHHCCCEEE
T ss_conf 02577766777776655654226744554320335797899999999998554-88799998988--99973242899
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=8.2e-08 Score=63.70 Aligned_cols=78 Identities=21% Similarity=0.291 Sum_probs=60.7
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEE
Q ss_conf 78889478679999999----80799484986698899989999999999999861599599998459148985069199
Q 000562 304 LKGISGGQKKRLTTGEL----LVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1419)
Q Consensus 304 ~rgLSGGQRkRvsia~a----L~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~Ii 379 (1419)
...+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+..+. +.-++ +..|+|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~Qvi--itTHsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFI--VITHNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEE--EECCCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEE--EEECCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799--9989889997324289
Q ss_pred E--ECCCE
Q ss_conf 9--72983
Q 000562 380 L--LSEGQ 385 (1419)
Q Consensus 380 l--L~~G~ 385 (1419)
. +.+|.
T Consensus 293 ~v~~~~g~ 300 (308)
T d1e69a_ 293 GVTMVNGV 300 (308)
T ss_dssp EEEESSSC
T ss_pred EEEEECCE
T ss_conf 99996999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=1e-08 Score=69.41 Aligned_cols=74 Identities=18% Similarity=0.219 Sum_probs=61.3
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEE
Q ss_conf 88899999999999999----62999510409999999999999999999998659989999168777899731749899
Q 000562 967 NGLSTEQRKRLTIAVEL----VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1419)
Q Consensus 967 ~glSgGqrkrl~ia~~L----~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL 1042 (1419)
..+|||||.++++|.-+ ..+++++++|||+++||+.....+.+.|++++..+.-+|+|+|+| ++.+..|..+..
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.43 E-value=9.8e-07 Score=56.83 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHCCEEEE
Q ss_conf 88894786799999998----07994849866988999899999999999998615995999984591489850691999
Q 000562 305 KGISGGQKKRLTTGELL----VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1419)
Q Consensus 305 rgLSGGQRkRvsia~aL----~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~lfD~Iil 380 (1419)
.-+|||||.++++|-.+ +.+++++++|||.++||......+.+.|+..+. ..+-++ +..|.|++.+.+|.++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~--~~~Q~I-~iTH~~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFI-VISLKNTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEE-EECSCHHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCCEEE-EEECCHHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728--998899-99587899973661799
Q ss_pred E
Q ss_conf 7
Q 000562 381 L 381 (1419)
Q Consensus 381 L 381 (1419)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=98.03 E-value=9.1e-06 Score=50.64 Aligned_cols=33 Identities=18% Similarity=0.180 Sum_probs=18.0
Q ss_pred EECCEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 104147673975999986999957999999973
Q 000562 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 151 L~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG 183 (1419)
|+++.+=++||++++|.|+||+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 888746978980899994799979999999997
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.91 E-value=0.00026 Score=41.30 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=72.5
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC--CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 621003687488299997579999467997570998--896388899997902770011235899725887899833999
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 844 iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~--~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
-|+.+.+-++||+++.|.|++|+|||||+.-++-.. ..|. .+.|+. ...+..+
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~-------------------~v~~~s------~E~~~~~ 78 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGK-------------------KVGLAM------LEESVEE 78 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCC-------------------CEEEEE------SSSCHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CEEEEE------ECCCHHH
T ss_conf 688874697898089999479997999999999726553366-------------------345764------0111135
Q ss_pred HHH-HHH-HHCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 999-986-61299978599999-----99999999919965337732378888889999999999999962999510409
Q 000562 922 SLL-FSA-WLRLPSEIELETQR-----AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1419)
Q Consensus 922 ~L~-f~a-~lr~~~~~~~~~~~-----~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDE 994 (1419)
... +.+ ....+.......+. ...++..+.+.-. +.+.-.+........+.....-...--.+|+++++|-
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~ 155 (277)
T d1cr2a_ 79 TAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGN---DTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDH 155 (277)
T ss_dssp HHHHHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSS---SCEEEECCC-CCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred HHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCC---CEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 7769999864587101012222214567788898874035---2146621433106899999865432136762599705
Q ss_pred CC-----CCCC--HHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf 99-----9999--99999999999999865-9989999168
Q 000562 995 PT-----SGLD--ARAAAIVMRTVRNIVNT-GRTIVCTIHQ 1027 (1419)
Q Consensus 995 PT-----sGLD--~~~a~~i~~~lr~l~~~-g~tvi~tiHq 1027 (1419)
.+ .+-+ ......+++.++++|.. +.+|+++.|-
T Consensus 156 l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 156 ISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp EEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 42120346544306778999999999765016552031035
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.86 E-value=0.00012 Score=43.54 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHH-HHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 999999999999629995104099999999999-999999999986599899991687778997
Q 000562 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAA-AIVMRTVRNIVNTGRTIVCTIHQPSIDIFE 1034 (1419)
Q Consensus 972 Gqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a-~~i~~~lr~l~~~g~tvi~tiHqps~~i~~ 1034 (1419)
.|-+++.-......+.+++++||.-+|=|+... ......+..+.+.+..+++++|.. ++.+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--3332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.00021 Score=41.90 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEEECCCC
Q ss_conf 999999999999629995104099999999999999-9999999865-998999916877
Q 000562 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV-MRTVRNIVNT-GRTIVCTIHQPS 1029 (1419)
Q Consensus 972 Gqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i-~~~lr~l~~~-g~tvi~tiHqps 1029 (1419)
.|-+|+.-......+.+++++||+-+|=++.....+ ...++.+... +..+++|+|...
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFE 165 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf 999999999974546608853222358774566678987645432045442898524687
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.53 E-value=0.00056 Score=39.20 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 476739759999869999579999999739
Q 000562 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 155 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.|-+++|++++|.|+||||||+|+.-++-.
T Consensus 20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 20 GGGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 689869849999918999999999999999
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.47 E-value=9e-05 Score=44.27 Aligned_cols=63 Identities=13% Similarity=0.061 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHH
Q ss_conf 78679999999807994849866988999899999999999998615995999984591489850
Q 000562 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1419)
Q Consensus 310 GQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~~~l 374 (1419)
.|-+|++-.-...+..+++++||+.+|=|+.....+...+-+.-...+..++++.|++ +.-.+
T Consensus 100 ~el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 100 VEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf 8678898775028977278554545686233200258888888862376137865202--33322
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0023 Score=35.31 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=27.9
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHCCCCEEEEEEECCHH
Q ss_conf 07994849866988---9--998999999999999986159959999845914
Q 000562 322 VGPARVLFMDEISN---G--LDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1419)
Q Consensus 322 ~~~~~vlllDEpTs---G--LDs~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~ 369 (1419)
..+++++++|..+. + -|.....++++.|+.++...+.+ ++.+||+..
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~-vi~v~H~~K 181 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASK 181 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC--
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCC-EEHHHHCCC
T ss_conf 2676589628135422665232256899998877776447975-401310055
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.41 E-value=5.6e-05 Score=45.57 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=13.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599998699995799999997394
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
|+.++++|+||.|||||+|+|.|..
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 9808997889877888877305355
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.27 E-value=0.00011 Score=43.82 Aligned_cols=27 Identities=44% Similarity=0.570 Sum_probs=20.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.|++++|.|||||||||+.+.|+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00025 Score=41.46 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHCCCCEEEEEEEC
Q ss_conf 786799999998079948498669889998999999999-999986159959999845
Q 000562 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKY-LKHSTRALDGTTVISLLQ 366 (1419)
Q Consensus 310 GQRkRvsia~aL~~~~~vlllDEpTsGLDs~ta~~I~~~-Lr~~~~~~~~t~iisl~q 366 (1419)
.|-+|++-.-...+..+++++||+-+|=++..+..+... +..+....+..++++.|.
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~ 163 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 163 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 9999999999745466088532223587745666789876454320454428985246
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.19 E-value=0.00012 Score=43.45 Aligned_cols=27 Identities=26% Similarity=0.608 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 882999975799994679975709988
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
+|..++++|+||+|||||+|.|.+...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~ 120 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLK 120 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH
T ss_conf 698089978898778888773053555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.13 E-value=0.00014 Score=43.12 Aligned_cols=25 Identities=36% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
++++.|+||||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00014 Score=43.09 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..+++.+|.|||||||||+.+.|+.+++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.05 E-value=0.00016 Score=42.72 Aligned_cols=27 Identities=33% Similarity=0.626 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 759999869999579999999739499
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
|++..|+||||||||||.+.|..+.+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.01 E-value=6e-05 Score=45.42 Aligned_cols=33 Identities=30% Similarity=0.520 Sum_probs=19.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf 759999869999579999999739499997001999
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT 196 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~ 196 (1419)
|+.++++|+||+|||||+|+|.|...- .+|+|.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHH---HHCCCC
T ss_conf 564999877873487898751517676---403555
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0084 Score=31.69 Aligned_cols=149 Identities=23% Similarity=0.222 Sum_probs=71.0
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 74882999975799994679975709988963888999979027700112358997258878998339999999866129
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~a~lr~ 931 (1419)
+.||+++.|.|++|+|||||+.-|+.....| .-. .|.... -...+-|+.-++.. -.+.+-+ .+..
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g----~~~-~~~~~~---~~~~vl~~~~E~~~---~~~~~Rl--~~~~-- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGG----PDL-LEVGEL---PTGPVIYLPAEDPP---TAIHHRL--HALG-- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTC----CCT-TCCCCC---CCCCEEEEESSSCH---HHHHHHH--HHHH--
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCC----CCC-CCCCCC---CCCCEEEEECCCHH---HHHHHHH--HHHH--
T ss_conf 5589589999289998999999999999769----972-111235---78736898512349---9999999--9986--
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC---C--CCHHHHHH
Q ss_conf 997859999999999999919965337732378888889999999999999962999510409999---9--99999999
Q 000562 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS---G--LDARAAAI 1006 (1419)
Q Consensus 932 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTs---G--LD~~~a~~ 1006 (1419)
........ ....+.+.+.+..+... ....-.....+ .....+++++++|--+. | -|......
T Consensus 91 -~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~ 157 (274)
T d1nlfa_ 91 -AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 157 (274)
T ss_dssp -TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHHHHHHHH---HHHCCCCCEEECCCHHHHCCCCCCCHHHHHH
T ss_conf -23686665----31233323214567420-----35789999998---8752676589628135422665232256899
Q ss_pred HHHHHHHHHH-CCCEEEEEECCC
Q ss_conf 9999999986-599899991687
Q 000562 1007 VMRTVRNIVN-TGRTIVCTIHQP 1028 (1419)
Q Consensus 1007 i~~~lr~l~~-~g~tvi~tiHqp 1028 (1419)
+++.++.++. .+++|+++.|..
T Consensus 158 ~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 158 VIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 99887777644797540131005
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.92 E-value=0.0014 Score=36.61 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=15.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39759999869999579999999739499
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+.+.-++|.||.||||||||++|.+..++
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred HHCCCEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 83788899940356625789998653014
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.90 E-value=0.0087 Score=31.59 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=11.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHH
Q ss_conf 767397599998699995799999
Q 000562 156 GIIRPSRLTLLLGPPSSGKTTLLL 179 (1419)
Q Consensus 156 ~~i~pG~~~~ilGp~GsGKSTLL~ 179 (1419)
|-+++|+++.|.|+||+|||+|..
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~ 44 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSI 44 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 899698399999479999999999
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.87 E-value=0.00031 Score=40.81 Aligned_cols=27 Identities=37% Similarity=0.363 Sum_probs=23.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 759999869999579999999739499
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.+.+++.||||||||||.++|++.+..
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 979998897998899999999998651
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.87 E-value=0.00025 Score=41.42 Aligned_cols=25 Identities=36% Similarity=0.493 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.++|.||||||||||.+.|+.+++
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.87 E-value=0.00025 Score=41.47 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=21.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.|.++.+.|+|||||||+.++|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.86 E-value=0.00024 Score=41.59 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=25.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCC
Q ss_conf 599998699995799999997394999970019999793
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~ 200 (1419)
++..|.|++|||||||+..|..++......-|.|...++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.00033 Score=40.68 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=22.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 767397599998699995799999997394
Q 000562 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 156 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
|-+++|+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.00036 Score=40.46 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82999975799994679975709988
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
|.++.|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.80 E-value=0.00035 Score=40.50 Aligned_cols=25 Identities=36% Similarity=0.585 Sum_probs=19.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
++.+|.|||||||||+.+.|+.+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.79 E-value=0.00035 Score=40.47 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=21.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
++|-..+|.|||||||||+.+.|+-+++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.73 E-value=0.00089 Score=37.91 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+++|+||+|||||||++.|...+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~~ 26 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLED 26 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918998399999999998843
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.72 E-value=0.00044 Score=39.87 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=19.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999986999957999999973949
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.++++|.|+|||||||+.+.|+.+++
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.70 E-value=0.0012 Score=37.14 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=26.0
Q ss_pred EEC-CEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 104-14767397599998699995799999997394
Q 000562 151 LDD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 151 L~~-vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
|+. +.|-+++|++++|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997207986288599999179999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00062 Score=38.93 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=19.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.|.+..|+||||||||||.+.|.-+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.67 E-value=0.00015 Score=42.85 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEE
Q ss_conf 882999975799994679975709988963888999
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIY 889 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~ 889 (1419)
.|..++++|+||+|||||+|.|.+... ..+|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~--~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHH--HHHCCCC
T ss_conf 356499987787348789875151767--6403555
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.66 E-value=0.0003 Score=40.97 Aligned_cols=26 Identities=42% Similarity=0.613 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999869999579999999739499
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+.++|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.65 E-value=0.00068 Score=38.68 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=18.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999869999579999999739
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
+++.+.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.65 E-value=0.00035 Score=40.53 Aligned_cols=28 Identities=29% Similarity=0.549 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.+.+..|+|||||||||+.+.|+-+++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g 33 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG 33 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 6782899989999987999999999869
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.64 E-value=0.00064 Score=38.83 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=23.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88299997579999467997570998
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.63 E-value=0.0005 Score=39.52 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=20.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 397599998699995799999997394
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
++|-..+++|||||||||..+.|+-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.59 E-value=0.00045 Score=39.81 Aligned_cols=23 Identities=52% Similarity=0.668 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+|.|||||||||+.+.|+-+++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.57 E-value=0.00064 Score=38.85 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++|+|++|+|||||++.|.|+.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.55 E-value=0.00064 Score=38.85 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++|+|+||+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=0.00077 Score=38.32 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 882999975799994679975709988
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.|.++.|+||||+|||||++.|..+.+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.53 E-value=0.00071 Score=38.56 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 75999986999957999999973949
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
-.+.+|+|||||||||+.+.|+.++.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 72899989999998999999999859
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.53 E-value=0.00071 Score=38.55 Aligned_cols=22 Identities=45% Similarity=0.545 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|.|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.008 Score=31.81 Aligned_cols=25 Identities=44% Similarity=0.748 Sum_probs=14.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599998699995799999997394
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.+-+++.||||+|||++.++||..+
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf 8867866899888228999999982
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.46 E-value=0.00067 Score=38.73 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+++|+|||||||||+.+.|+-+++
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~g 31 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 4899989999988999999999979
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.0007 Score=38.58 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=22.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 476739759999869999579999999739
Q 000562 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 155 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.|=+++|++++|.||||||||||..-++-.
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.41 E-value=0.00085 Score=38.03 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
|+.-.+++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.41 E-value=0.0016 Score=36.21 Aligned_cols=45 Identities=16% Similarity=0.206 Sum_probs=32.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 59999869999579999999739499997001999979338999998318998267777889
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d~~~~~ 223 (1419)
-+++|.|++||||||+.+.|...+... .....+..++++|.|.++
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 899996899998768999999997304-----------------689965999521568984
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.34 E-value=0.00085 Score=38.03 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=22.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999869999579999999739499
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
++++|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=6e-05 Score=45.39 Aligned_cols=35 Identities=23% Similarity=0.138 Sum_probs=26.2
Q ss_pred EECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 104147673975999986999957999999973949
Q 000562 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 151 L~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.++.+..+.+| +++|+|||||||||+|.||.--+.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 70279974998-089988999987999999999966
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.0012 Score=37.02 Aligned_cols=22 Identities=27% Similarity=0.598 Sum_probs=13.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8299997579999467997570
Q 000562 855 GVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~La 876 (1419)
.-.+||.|++|||||||++.|.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~ 75 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFG 75 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 3289743899998999999999
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.30 E-value=0.00097 Score=37.69 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.++|+|||||||||..+.|+-+++
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999979999998999999999869
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.30 E-value=0.022 Score=29.02 Aligned_cols=162 Identities=15% Similarity=0.073 Sum_probs=76.0
Q ss_pred EECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCC--CCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 2100-368748829999757999946799757099--8896388899997902770011235899725887899833999
Q 000562 845 LVNV-TGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1419)
Q Consensus 845 L~~v-s~~~~pG~~~ai~G~sGaGKTTLl~~Lag~--~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 921 (1419)
|+++ .|-+++|+++.|.|++|+|||+|..-++.. ..++ . ...|+.-+ .+..+
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~---~----------------~~~~~s~e------~~~~~ 69 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---E----------------PGVFVTFE------ETPQD 69 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---C----------------CEEEEESS------SCHHH
T ss_pred HHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---C----------------CCCCCCCC------CCHHH
T ss_conf 98855689969839999947999999999999999998568---8----------------74201266------79999
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHH--HCCCCCEEECCCCC
Q ss_conf 9999866129997859999999999999919965337732378888889999-99999999996--29995104099999
Q 000562 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ-RKRLTIAVELV--ANPSIVFMDEPTSG 998 (1419)
Q Consensus 922 ~L~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGq-rkrl~ia~~L~--~~p~il~lDEPTsG 998 (1419)
.......... . . ....+.............. .....+... ...+.-....+ .+|++++.|--+.=
T Consensus 70 ~~~~~~~~~~--~--~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l 137 (242)
T d1tf7a1 70 IIKNARSFGW--D--L-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSV 137 (242)
T ss_dssp HHHHHGGGTC--C--H-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTT
T ss_pred HHHHHHHCCC--C--H-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 9999998499--8--4-------8988714302444210335-4444302458999999999988631222002078899
Q ss_pred C-----CHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHCCEEEEEE
Q ss_conf 9-----9999999999999998659989999168777--------8997317498990
Q 000562 999 L-----DARAAAIVMRTVRNIVNTGRTIVCTIHQPSI--------DIFESFDELLFMK 1043 (1419)
Q Consensus 999 L-----D~~~a~~i~~~lr~l~~~g~tvi~tiHqps~--------~i~~~fD~illL~ 1043 (1419)
. +......+.+.++...+.+.|++++.|.... ..-..+|.++.+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 138 FQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp STTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 8760572678999999999998639716884210255422246762335362999988
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.29 E-value=0.0014 Score=36.74 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=13.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7599998699995799999997
Q 000562 161 SRLTLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~La 182 (1419)
-++++++|+|||||||+.+.++
T Consensus 14 p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 9899998999998999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.29 E-value=0.0013 Score=36.88 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488299997579999467997570998
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.00081 Score=38.19 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=13.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599998699995799999997394
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
|.++.+.|+|||||||+.+.|+-++
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9699988999999999999999999
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.27 E-value=0.0013 Score=36.85 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=22.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 4767397599998699995799999997
Q 000562 155 SGIIRPSRLTLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 155 s~~i~pG~~~~ilGp~GsGKSTLL~~La 182 (1419)
.|=+++|++++|.||||||||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.24 E-value=0.00095 Score=37.73 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+|+|||||||||+.+.|+-+++
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0011 Score=37.45 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=30.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999986999957999999973949999700199997933899999831899826777788
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d~~~~ 222 (1419)
+++|-|++||||||+.+.|+-.+...... .....+..++++|.|.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~~~--------------~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNEVD--------------YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSC--------------GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHCCC--------------CCCCCEEEEECCCCCCC
T ss_conf 99998999787999999999996410134--------------57884399934653224
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.20 E-value=0.00092 Score=37.82 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..|+|||||||||+.+.|+-+++
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0012 Score=37.13 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
...+.|||||||||+.+.|+-+++
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 499989999999999999999969
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.17 E-value=0.0015 Score=36.46 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=16.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.++|+|+|++|||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.16 E-value=0.0013 Score=36.89 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..+|+|||||||||+.+.|+-+++
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0014 Score=36.61 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8829999757999946799757099
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+..-+.+.||+|+|||+|.+.||..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.13 E-value=0.0017 Score=36.12 Aligned_cols=27 Identities=22% Similarity=0.276 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488299997579999467997570998
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+.|.++.|.|+|||||||+-+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.12 E-value=0.0016 Score=36.37 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|+||+|||||+++|.|+
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0018 Score=35.97 Aligned_cols=29 Identities=31% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 47673975999986999957999999973
Q 000562 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 155 s~~i~pG~~~~ilGp~GsGKSTLL~~LaG 183 (1419)
.|-+++|++++|.||||||||+|...++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.002 Score=35.64 Aligned_cols=24 Identities=42% Similarity=0.785 Sum_probs=14.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
|-.++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.10 E-value=0.0022 Score=35.42 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+|++|.+|+|||||++.|.|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.09 E-value=0.0016 Score=36.26 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=10.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975799994679975709
Q 000562 858 TALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag 877 (1419)
+.+.||+|+||||+..+|+.
T Consensus 55 lll~GPpG~GKTt~a~~la~ 74 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQ 74 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99987999988899999999
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.09 E-value=0.0019 Score=35.82 Aligned_cols=27 Identities=26% Similarity=0.551 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488299997579999467997570998
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
++|-.++|+|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.09 E-value=0.0014 Score=36.61 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
-+.|.||+|+|||+|.+++++.
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~ 64 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANE 64 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHH
T ss_conf 5788789987630477887877
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.08 E-value=0.0015 Score=36.48 Aligned_cols=27 Identities=44% Similarity=0.588 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
|-+-+++.||||+|||++.++||..+.
T Consensus 39 p~~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 39 PLVSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 980799889699988999999862010
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.07 E-value=0.0017 Score=36.18 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-++|+|++|+|||||+|.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.06 E-value=0.0013 Score=36.83 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=96.06 E-value=0.0023 Score=35.34 Aligned_cols=22 Identities=32% Similarity=0.348 Sum_probs=10.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 5999986999957999999973
Q 000562 162 RLTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG 183 (1419)
..++|.||||+|||||+..|..
T Consensus 52 ~~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 5986117998889999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.02 E-value=0.0018 Score=35.96 Aligned_cols=22 Identities=55% Similarity=0.848 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
+++.||||+|||+|.++|+..+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.02 E-value=0.0011 Score=37.46 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=12.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999757999946799757099
Q 000562 858 TALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+||+|++++|||||+|.|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.01 E-value=0.0018 Score=35.92 Aligned_cols=25 Identities=32% Similarity=0.491 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.++|+|||||||+||++.|+.+.+.
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 6999899999989999999974886
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0016 Score=36.22 Aligned_cols=24 Identities=38% Similarity=0.495 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.+|.|||||||+|+-+.|+.+++
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.002 Score=35.64 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999869999579999999739499
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+++.|+||+|+||+||++.|..+.+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~ 29 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPD 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 71999998999999999999970976
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.98 E-value=0.0023 Score=35.32 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=9.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.|.|
T Consensus 3 V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999989999999967
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.98 E-value=0.0021 Score=35.55 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
-++|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.98 E-value=0.0022 Score=35.36 Aligned_cols=24 Identities=38% Similarity=0.319 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+++|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.98 E-value=0.0015 Score=36.40 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..++|+|||||||+.+.||.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.97 E-value=0.0072 Score=32.12 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=39.3
Q ss_pred HCCCCCEEECC----------CCCCCHHHHHHHHHHHHHHH---HCCC-EEEEEECCCCHHHHHHCCEEEEEEC--CCEE
Q ss_conf 29995104099----------99999999999999999998---6599-8999916877789973174989906--9799
Q 000562 985 ANPSIVFMDEP----------TSGLDARAAAIVMRTVRNIV---NTGR-TIVCTIHQPSIDIFESFDELLFMKR--GGEL 1048 (1419)
Q Consensus 985 ~~p~il~lDEP----------TsGLD~~~a~~i~~~lr~l~---~~g~-tvi~tiHqps~~i~~~fD~illL~~--gG~~ 1048 (1419)
..|.|||+||. ..+-+......+-..+..+- .... .||+|+.+|.. .|.-++ .. =.+.
T Consensus 100 ~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~-----ld~al~-R~~Rf~~~ 173 (247)
T d1ixza_ 100 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDI-----LDPALL-RPGRFDRQ 173 (247)
T ss_dssp SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGG-----SCGGGG-STTSSCEE
T ss_pred CCCEEEEEECHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCC-----CCHHHC-CCCCCCEE
T ss_conf 699799997736647467899888758999999999999638777899899980799400-----699675-89878579
Q ss_pred EEECCCCCCHHHHHHHHHHC
Q ss_conf 99379998625899999864
Q 000562 1049 IYAGPLGSKSCELIKYFEAV 1068 (1419)
Q Consensus 1049 vy~G~~g~~~~~~~~yF~~~ 1068 (1419)
++++++.. .+-.+.++.+
T Consensus 174 i~~~~P~~--~eR~~il~~~ 191 (247)
T d1ixza_ 174 IAIDAPDV--KGREQILRIH 191 (247)
T ss_dssp EECCSCCH--HHHHHHHHHH
T ss_pred EEECCCCH--HHHHHHHHHH
T ss_conf 99799699--9999999987
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.95 E-value=0.0018 Score=35.97 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=26.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 368748829999757999946799757099
Q 000562 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 849 s~~~~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.|-++||+++.|.|++|+|||||..-++..
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 589859979999958999999999999999
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.95 E-value=0.0021 Score=35.49 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=25.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCC
Q ss_conf 299997579999467997570998-89638889999790
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYISGY 893 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~G~ 893 (1419)
..++|+|++|||||||+..|..+. ..|..-|-|.-+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0017 Score=36.17 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..++|||||||||+.+.|+-+++
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999998999999999969
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.93 E-value=0.0018 Score=36.05 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299997579999467997570998
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.92 E-value=0.0022 Score=35.42 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|.||+|||||+|+|.|.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999789999999588
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.92 E-value=0.0017 Score=36.14 Aligned_cols=23 Identities=57% Similarity=0.927 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.92 E-value=0.0022 Score=35.44 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.++|+|.+|+|||||+|.|.|+..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.92 E-value=0.0026 Score=34.98 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
-++++|++|+|||||+++|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.91 E-value=0.0022 Score=35.37 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=11.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99975799994679975709
Q 000562 858 TALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag 877 (1419)
+.+.||+|+|||+|.++++.
T Consensus 41 iLL~GppGtGKT~l~~ala~ 60 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVAN 60 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 68766998883089999998
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.89 E-value=0.0017 Score=36.07 Aligned_cols=25 Identities=48% Similarity=0.648 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
-+++.||||+||||+.++|+..+..
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 4898799997388999999850388
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.89 E-value=0.0018 Score=36.02 Aligned_cols=23 Identities=57% Similarity=0.860 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+++-||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.89 E-value=0.0018 Score=36.00 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
-+.++|+|||||||+.+.||-+++
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 889988999988999999999949
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.89 E-value=0.0015 Score=36.51 Aligned_cols=21 Identities=43% Similarity=0.564 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|+|++|||||+++|+|.
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899998799999999689
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.87 E-value=0.003 Score=34.59 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+.+++|.|||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8999989999999999999999997
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.86 E-value=0.0019 Score=35.88 Aligned_cols=21 Identities=38% Similarity=0.661 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
.+++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.85 E-value=0.0021 Score=35.55 Aligned_cols=24 Identities=38% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..+|-|||||||||..+.|+-+++
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.84 E-value=0.00011 Score=43.80 Aligned_cols=31 Identities=32% Similarity=0.360 Sum_probs=25.4
Q ss_pred EECEEEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 21003687488299997579999467997570
Q 000562 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 845 L~~vs~~~~pG~~~ai~G~sGaGKTTLl~~La 876 (1419)
.++.+..+.|| ++.|+|+|||||||+|++|.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred EEEEEEECCCC-EEEEECCCCCCHHHHHHHHH
T ss_conf 70279974998-08998899998799999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0028 Score=34.78 Aligned_cols=25 Identities=28% Similarity=0.579 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999975799994679975709988
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
-.+||+|.+|+|||||+|+|.|...
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 1799989999978999999958886
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0028 Score=34.78 Aligned_cols=21 Identities=43% Similarity=0.722 Sum_probs=11.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999757999946799757099
Q 000562 858 TALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++++|.+++|||||+|.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.82 E-value=0.0019 Score=35.79 Aligned_cols=23 Identities=48% Similarity=0.687 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.++|+|||||||+.+.|+.+++
T Consensus 4 IvliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999849
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.80 E-value=0.0025 Score=35.07 Aligned_cols=23 Identities=35% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
-++||-|++|||||||.+.|+..
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89997898878999999999998
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.79 E-value=0.0029 Score=34.63 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.++|+|++|+|||||++.|.|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.78 E-value=0.0019 Score=35.88 Aligned_cols=23 Identities=35% Similarity=0.579 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99986999957999999973949
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+++|||||||||..+.|+-+++
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.76 E-value=0.0022 Score=35.35 Aligned_cols=26 Identities=27% Similarity=0.516 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999869999579999999739499
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
++.++.|+|||||||+.+.|+.+++.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.74 E-value=0.002 Score=35.72 Aligned_cols=24 Identities=38% Similarity=0.535 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999869999579999999739499
Q 000562 164 TLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+.|+||||||||||.+.|+-+.+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~ 26 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSS 26 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 999999999999999999974887
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.73 E-value=0.0027 Score=34.88 Aligned_cols=23 Identities=35% Similarity=0.515 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99975799994679975709988
Q 000562 858 TALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
+.|+||||||||||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.72 E-value=0.0026 Score=34.92 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.++|+|++|||||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.72 E-value=0.0032 Score=34.37 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999975799994679975709988
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
..+.|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.69 E-value=0.0035 Score=34.14 Aligned_cols=22 Identities=59% Similarity=0.807 Sum_probs=12.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0042 Score=33.61 Aligned_cols=24 Identities=46% Similarity=0.695 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998699995799999997394
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
=-++++|++++|||||+++|.|.-
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 899998999998999999996888
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.0037 Score=33.94 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=15.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++|+|.+|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.68 E-value=0.0035 Score=34.16 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999975799994679975709
Q 000562 856 VLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0027 Score=34.84 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999975799994679975709988
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
-.++|+|++++|||||++.|.+.+.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899988999989999999858985
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.0044 Score=33.51 Aligned_cols=22 Identities=41% Similarity=0.717 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.++++|.+++|||||+++|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.63 E-value=0.0044 Score=33.50 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++|+|++|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.62 E-value=0.0039 Score=33.82 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++++|++|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.60 E-value=0.0023 Score=35.23 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=26.6
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 036874882999975799994679975709988
Q 000562 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 848 vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
+...++.+.-+.|.|++||||||||++|.+..+
T Consensus 159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~ 191 (323)
T d1g6oa_ 159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP 191 (323)
T ss_dssp HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 999998378889994035662578999865301
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.57 E-value=0.0025 Score=35.01 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|+|++|||||+++|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.56 E-value=0.0042 Score=33.62 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82999975799994679975709988
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
..++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0046 Score=33.33 Aligned_cols=28 Identities=29% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6874882999975799994679975709
Q 000562 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 850 ~~~~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
|-+.+|.++-+.|++|+|||||.-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.54 E-value=0.0042 Score=33.62 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299997579999467997570998
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.54 E-value=0.0039 Score=33.86 Aligned_cols=21 Identities=38% Similarity=0.528 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|+||+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.0026 Score=34.99 Aligned_cols=22 Identities=32% Similarity=0.582 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997579999467997570998
Q 000562 858 TALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+||+|.+++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.52 E-value=0.0029 Score=34.63 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
-++++|++|+|||||++.|.+.-
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996788
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.49 E-value=0.0037 Score=33.96 Aligned_cols=22 Identities=45% Similarity=0.610 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997579999467997570998
Q 000562 858 TALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+.|+||||||||||++.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.45 E-value=0.0045 Score=33.43 Aligned_cols=22 Identities=45% Similarity=0.546 Sum_probs=18.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
++++|+|++|||||++.|.+.-
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.43 E-value=0.0035 Score=34.15 Aligned_cols=26 Identities=46% Similarity=0.463 Sum_probs=14.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97599998699995799999997394
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++.+++.||||+|||++.++|++.+
T Consensus 153 ~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 153 KKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 76769998999988899999999985
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.42 E-value=0.0039 Score=33.84 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299997579999467997570998
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-.++|+|++|+|||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789999999989899999996788
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.41 E-value=0.0041 Score=33.68 Aligned_cols=22 Identities=45% Similarity=0.551 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+|++||||||+.+.|+.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7989899999989999999999
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.41 E-value=0.0046 Score=33.36 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++||-|++||||||+-+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.40 E-value=0.0039 Score=33.79 Aligned_cols=45 Identities=27% Similarity=0.362 Sum_probs=31.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCC
Q ss_conf 99998699995799999997394999970019999793389999983189982677
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD 218 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d 218 (1419)
-.+++||+|||||-|.+.||+.++- --+..++..++ .++||..+-
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCCT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECCH
T ss_conf 4799899998899999999987389-----88986255114------111110444
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.0065 Score=32.39 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999975799994679975709
Q 000562 856 VLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
-++||.|++||||||+-+.|..
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~ 102 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCCCHHHHHHHH
T ss_conf 8999968999987689999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.40 E-value=0.005 Score=33.14 Aligned_cols=20 Identities=35% Similarity=0.348 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
.+++|+|.+|||||+++|.|
T Consensus 8 IaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99990778709999999997
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.39 E-value=0.0043 Score=33.56 Aligned_cols=28 Identities=32% Similarity=0.305 Sum_probs=22.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9759999869999579999999739499
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+...+++.||||+||||+++.++..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 8881688898999899999999999754
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.38 E-value=0.0054 Score=32.90 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=11.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 759999869999579999999739
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++.++|.||+|+|||||++.++-.
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 987999869998299999999997
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.35 E-value=0.0052 Score=33.01 Aligned_cols=21 Identities=43% Similarity=0.681 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.|.+.
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHCCC
T ss_conf 999999998999999998089
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.32 E-value=0.0022 Score=35.35 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
-+++.||||+|||||++.+++.|++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.31 E-value=0.019 Score=29.50 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++++|++|+|||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99999999989999999980899
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.30 E-value=0.0071 Score=32.16 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=14.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97599998699995799999997394
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.|.+..+.|.|||||||+.+.|+-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.30 E-value=0.0054 Score=32.91 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
++++|+||+|||||++.+.+.-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989999999996798
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.23 E-value=0.0059 Score=32.66 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++++|.+|||||||++.|.+.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999668
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.21 E-value=0.0055 Score=32.89 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
....++|.||||||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 832897438999989999999999997
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.20 E-value=0.0027 Score=34.88 Aligned_cols=25 Identities=44% Similarity=0.509 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8829999757999946799757099
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.|.++.|+|++||||||+-+.|+.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9969998899999999999999999
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.18 E-value=0.0066 Score=32.37 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.++.|+||+||||||+-+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=95.15 E-value=0.0051 Score=33.08 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8748829999757999946799757099
Q 000562 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 851 ~~~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.-.|.-.+.+.||+|+|||.|.+.|++.
T Consensus 119 ~~~~~g~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 119 HRYASGMVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEEESEEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 4368863888779985088999999998
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.10 E-value=0.0072 Score=32.12 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.++|+|++.+|||||+++|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.08 E-value=0.0069 Score=32.25 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=34.4
Q ss_pred HHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEE
Q ss_conf 9999962999510409999999999999999999998659989999168777899731749
Q 000562 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1419)
Q Consensus 979 ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~i 1039 (1419)
+..+|=.+|.+++..|.. |..++...+ +.|.+|+.|+.|+|-.+ .+..++|+
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--67665432
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.08 E-value=0.0073 Score=32.08 Aligned_cols=26 Identities=42% Similarity=0.502 Sum_probs=22.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48829999757999946799757099
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++|-.+.|+||+||||||+-+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0031 Score=34.50 Aligned_cols=24 Identities=21% Similarity=0.281 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998699995799999997394
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
--++++|+|++|||||+++|.|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 789998899998999999985898
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.04 E-value=0.0061 Score=32.60 Aligned_cols=23 Identities=35% Similarity=0.342 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-+||+|++.||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.02 E-value=0.0073 Score=32.10 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEEC
Q ss_conf 88299997579999467997570998-896388899997
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYIS 891 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~ 891 (1419)
..-.++|.|+.|||||||++.|.... ..|..-|-+.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.99 E-value=0.017 Score=29.80 Aligned_cols=25 Identities=40% Similarity=0.348 Sum_probs=14.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599998699995799999997394
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
..+.+++||+|+||||.+--||-++
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.0079 Score=31.86 Aligned_cols=22 Identities=50% Similarity=0.889 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.97 E-value=0.0063 Score=32.47 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.96 E-value=0.0061 Score=32.58 Aligned_cols=30 Identities=33% Similarity=0.454 Sum_probs=26.0
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 368748829999757999946799757099
Q 000562 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 849 s~~~~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.|-+.+|+++.|.|++|+|||||..-++..
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 799869969999838999889999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.95 E-value=0.0069 Score=32.25 Aligned_cols=31 Identities=29% Similarity=0.470 Sum_probs=26.6
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0368748829999757999946799757099
Q 000562 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 848 vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.|-+++|+++.|.|++|+|||+|..-++..
T Consensus 27 l~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 27 LGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp TTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 0798628859999917999989999999999
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.90 E-value=0.0086 Score=31.64 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.0073 Score=32.08 Aligned_cols=22 Identities=36% Similarity=0.437 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|.|++|+|||||+..++..
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889997199999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0065 Score=32.42 Aligned_cols=27 Identities=19% Similarity=0.171 Sum_probs=22.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 759999869999579999999739499
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+++.+|-|+.||||||+++.|+..+..
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 988999878887799999999999735
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.85 E-value=0.024 Score=28.83 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=14.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 975999986999957999999973
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG 183 (1419)
.|.-+++.|+||+|||||...|.-
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 999999981899998999999998
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0064 Score=32.43 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=19.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.|.+.++-|+.||||||+.+.|+..+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.82 E-value=0.008 Score=31.84 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=19.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
-+++|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.80 E-value=0.011 Score=31.06 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=21.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8299997579999467997570998
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-.++.|+||+||||||+.+.|+.+.
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.80 E-value=0.0054 Score=32.90 Aligned_cols=41 Identities=10% Similarity=0.214 Sum_probs=30.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf 999986999957999999973949999700199997933899999831899826777788
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d~~~~ 222 (1419)
+++|.|++||||||+.++|...+.. .| -.++.+++++.|-.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~----~~---------------v~~~iI~~Dsfyr~ 46 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRR----EG---------------VKAVSIEGDAFHRF 46 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHH----HT---------------CCEEEEEGGGGBSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH----CC---------------CCEEEEECCCCCCC
T ss_conf 9999899978099999999999715----69---------------97699947778756
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.77 E-value=0.011 Score=30.87 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=12.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7599998699995799999997394
Q 000562 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 161 G~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
+.+++++||+|+||||.+--||-++
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7799998999998899999999999
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.0098 Score=31.27 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++.||||+||||+.++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.72 E-value=0.0073 Score=32.07 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
++.|+|++|+|||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.71 E-value=0.0082 Score=31.75 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.++++|.+|+|||||++.+.+...
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999967987
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.67 E-value=0.011 Score=30.99 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 882999975799994679975709
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
.-+++.++|++||||||+.+-|+.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.65 E-value=0.01 Score=31.18 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+||.||+||||||+-..|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.65 E-value=0.0088 Score=31.55 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 2999975799994679975709988
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
..+.|.||+|+|||||..+|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.0078 Score=31.88 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-++|+|++|+|||||++.|.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.011 Score=31.00 Aligned_cols=22 Identities=45% Similarity=0.856 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++.||||+||||+.++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998899877558999999985
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.59 E-value=0.0097 Score=31.28 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997579999467997570998
Q 000562 858 TALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.58 E-value=0.009 Score=31.51 Aligned_cols=22 Identities=18% Similarity=0.379 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+||+||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.56 E-value=0.0063 Score=32.51 Aligned_cols=24 Identities=29% Similarity=0.245 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+.++.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.54 E-value=0.01 Score=31.17 Aligned_cols=23 Identities=43% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+.|.|++||||||+-+.|+.+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.54 E-value=0.011 Score=30.94 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+++++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.53 E-value=0.025 Score=28.61 Aligned_cols=28 Identities=25% Similarity=0.232 Sum_probs=16.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 6739759999869999579999999739
Q 000562 157 IIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 157 ~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
..-.|.-+++.|+||+|||||...|..+
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999999999808999989999999985
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.51 E-value=0.013 Score=30.44 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48829999757999946799757099
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.|.++-+.|.|||||||+.+.|+.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.46 E-value=0.012 Score=30.63 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.44 E-value=0.0095 Score=31.34 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=20.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.|+..++-|+.||||||+.+.|+.++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.43 E-value=0.013 Score=30.59 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699995799999997
Q 000562 163 LTLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~La 182 (1419)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.017 Score=29.67 Aligned_cols=28 Identities=36% Similarity=0.605 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+|....+++||+|+|||.|.++||-.+.
T Consensus 50 ~p~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 50 KPVGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 8765899977875006999999986336
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.40 E-value=0.015 Score=30.08 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82999975799994679975709988
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.-.++++|.+|+|||||++.|.+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 57999999999898999999966888
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.38 E-value=0.011 Score=30.92 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=24.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 3687488299997579999467997570
Q 000562 849 TGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 849 s~~~~pG~~~ai~G~sGaGKTTLl~~La 876 (1419)
.|-+.+|+++.|.|++|+|||||..-++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.34 E-value=0.011 Score=30.92 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8829999757999946799757099
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
|+.-+.++||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.31 E-value=0.012 Score=30.80 Aligned_cols=20 Identities=60% Similarity=0.738 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.+.+
T Consensus 19 I~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999899999999964
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.28 E-value=0.014 Score=30.35 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.27 E-value=0.012 Score=30.77 Aligned_cols=19 Identities=37% Similarity=0.396 Sum_probs=10.0
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9997579999467997570
Q 000562 858 TALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~La 876 (1419)
+.+.||+|+||||+..+++
T Consensus 36 lll~Gp~G~GKTt~~~~la 54 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALL 54 (252)
T ss_dssp EEEECSTTSSHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9988999998899999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.25 E-value=0.029 Score=28.25 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++|+|-|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.24 E-value=0.011 Score=30.94 Aligned_cols=26 Identities=35% Similarity=0.613 Sum_probs=21.4
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 748829999757999946799757099
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+|+. .+||+|...||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.21 E-value=0.013 Score=30.48 Aligned_cols=23 Identities=35% Similarity=0.343 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+.|+|++||||||+-+.||.+.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 88998899998899999999994
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.20 E-value=0.019 Score=29.42 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.+++|++.+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.17 E-value=0.0033 Score=34.31 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=12.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.15 E-value=0.015 Score=30.09 Aligned_cols=21 Identities=38% Similarity=0.631 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.14 E-value=0.018 Score=29.65 Aligned_cols=21 Identities=38% Similarity=0.726 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|..+||||||+++|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=94.14 E-value=0.026 Score=28.61 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEC
Q ss_conf 99998699995799999997394999970019999793389999983189982
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVS 215 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~ 215 (1419)
-++|+|-|.+|||||+++|++-- +....++..+..|.-.++.|+
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~---------~~~~~ypf~ti~pn~gvv~v~ 47 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG---------IEAANYPFCTIEPNTGVVPMP 47 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC---------------CCCCCCCCSSEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC---------CCCCCCCCCCCCCCEEEEECC
T ss_conf 48888999998899999997799---------741369988877845899643
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.14 E-value=0.011 Score=30.94 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=22.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48829999757999946799757099
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.+.++.|+||+||||||+-+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.12 E-value=0.016 Score=29.82 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.013 Score=30.44 Aligned_cols=29 Identities=28% Similarity=0.307 Sum_probs=25.4
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 36874882999975799994679975709
Q 000562 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 849 s~~~~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
.|-+.+|+++.|.|++|+|||+|..-++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.08 E-value=0.057 Score=26.36 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=26.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 621003687488299997579999467997570998
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 844 iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+|..... -.|.-+.+.|+||+|||||...|..+-
T Consensus 5 ~~H~~~v~-~~g~gvli~G~sG~GKS~lal~l~~~G 39 (177)
T d1knxa2 5 QIHGVLLE-VFGVGVLLTGRSGIGKSECALDLINKN 39 (177)
T ss_dssp EEEEEEEE-ETTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred EEEEEEEE-ECCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 17899999-999999998189999899999999859
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.08 E-value=0.018 Score=29.66 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8299997579999467997570998
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.-.++|-|+.||||||+++.|+...
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.047 Score=26.92 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=13.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999961
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.06 E-value=0.014 Score=30.22 Aligned_cols=24 Identities=46% Similarity=0.414 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
..++.++||+|+||||.+--||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.06 E-value=0.014 Score=30.33 Aligned_cols=153 Identities=17% Similarity=0.146 Sum_probs=74.0
Q ss_pred EEEEEECCEEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 03687488299997579999467997570998-89638889999790277001123589972588789983399999998
Q 000562 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK-TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 926 (1419)
Q Consensus 848 vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~-~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~L~f~ 926 (1419)
+.|-+.+|.++.|.|++|+|||+|..-++... ..+. ...|+.- ..+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~-------------------~~~~is~------e~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKE-------------------RAILFAY------EESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC-------------------CEEEEES------SSCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------------CCCEEEC------CCCHHHHHHHH
T ss_conf 5689869849999918999999999999999987232-------------------4411212------67999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCEEECCCC---CCCHH
Q ss_conf 661299978599999999999999199653377323788888899999999999999-62999510409999---99999
Q 000562 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL-VANPSIVFMDEPTS---GLDAR 1002 (1419)
Q Consensus 927 a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~glSgGqrkrl~ia~~L-~~~p~il~lDEPTs---GLD~~ 1002 (1419)
..+. .+ .. +. ...+.....+... ......+. .-.|...+ -.+|.+++.|--+. +.+..
T Consensus 74 ~~~~--~~--~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YSWG--MD--FE-------EM-ERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HTTS--CC--HH-------HH-HHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HHCC--CC--HH-------HH-HHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 9829--98--69-------98-5458617997300-----01017999-9999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCC---------CHHHHHHCCEEEEEE
Q ss_conf 9999999999998-6599899991687---------778997317498990
Q 000562 1003 AAAIVMRTVRNIV-NTGRTIVCTIHQP---------SIDIFESFDELLFMK 1043 (1419)
Q Consensus 1003 ~a~~i~~~lr~l~-~~g~tvi~tiHqp---------s~~i~~~fD~illL~ 1043 (1419)
.....+..+.+++ +.+.+++++.|.. +..+....|-++.|.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.05 E-value=0.02 Score=29.34 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=18.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 687488299997579999467997570
Q 000562 850 GAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 850 ~~~~pG~~~ai~G~sGaGKTTLl~~La 876 (1419)
|-+..|.++.+.|++|+|||||.-.++
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~ 81 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAV 81 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 986663369996488748899999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.04 E-value=0.017 Score=29.79 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|-|.+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.03 E-value=0.02 Score=29.27 Aligned_cols=49 Identities=24% Similarity=0.429 Sum_probs=30.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHH
Q ss_conf 99998699995799999997394999970019999793389999983189982677778899999999
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~~~~v~G~I~~nG~~~~~~~~~~~~ayv~Q~d~~~~~lTVrEtL 230 (1419)
+++|-|++|||||||...|.-.+... .| ....++.++.+|.+ +|-.|-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~~-------------~~~~v~~iS~DdfY---~t~~~r~ 77 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---YG-------------GEKSIGYASIDDFY---LTHEDQL 77 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---HG-------------GGSCEEEEEGGGGB---CCHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---HC-------------CCCCEEEECCCCCC---CCHHHHH
T ss_conf 99837998788999999999999987---27-------------78606763567777---8889999
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.02 E-value=0.017 Score=29.77 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+|++||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999989999999998
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.99 E-value=0.024 Score=28.73 Aligned_cols=28 Identities=32% Similarity=0.331 Sum_probs=18.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9759999869999579999999739499
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.|.+.++-|+-||||||+.+.|+-++..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7689999899888699999999999971
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.98 E-value=0.017 Score=29.69 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=12.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998699995799999997394
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.+.+++||+|+||||.+--||-++
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899998999998899999999999
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.02 Score=29.35 Aligned_cols=23 Identities=35% Similarity=0.401 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.95 E-value=0.021 Score=29.19 Aligned_cols=29 Identities=41% Similarity=0.594 Sum_probs=24.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39759999869999579999999739499
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.|+=++++.||.||||||+|.++...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.93 E-value=0.036 Score=27.69 Aligned_cols=34 Identities=24% Similarity=0.153 Sum_probs=22.0
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 31041476739759999869999579999999739
Q 000562 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 150 iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.++. +...-.|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.018 Score=29.56 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.85 E-value=0.017 Score=29.75 Aligned_cols=22 Identities=41% Similarity=0.576 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997579999467997570998
Q 000562 858 TALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+.++|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.83 E-value=0.061 Score=26.20 Aligned_cols=31 Identities=26% Similarity=0.151 Sum_probs=24.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 3687488299997579999467997570998
Q 000562 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 849 s~~~~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+...-.|.-+.++|+||+|||||...|..+-
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~g 38 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQRG 38 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHCC
T ss_conf 9999999999998089999899999999859
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.02 Score=29.35 Aligned_cols=26 Identities=42% Similarity=0.507 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48829999757999946799757099
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.|.+++|-|+.||||||+.+.|...
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.76 E-value=0.021 Score=29.14 Aligned_cols=20 Identities=15% Similarity=0.411 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.76 E-value=0.028 Score=28.40 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=24.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 739759999869999579999999739499
Q 000562 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 158 i~pG~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.+||.++++-|+-|||||||.+.++..+..
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 799829999668776588999998764223
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.75 E-value=0.0037 Score=33.97 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++++|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.74 E-value=0.02 Score=29.22 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++.|.|++||||||+.+.|+.+
T Consensus 3 iivi~G~~GsGKTT~~~~La~~ 24 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999898998989999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.029 Score=28.23 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999898993999999998188
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.72 E-value=0.021 Score=29.20 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+|++||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.70 E-value=0.019 Score=29.38 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999975799994679975709
Q 000562 856 VLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
-++||.|++||||||+.+.|..
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999989887789999999998
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.70 E-value=0.02 Score=29.31 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.021 Score=29.19 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.68 E-value=0.011 Score=31.07 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989997809999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.67 E-value=0.013 Score=30.53 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
.++++|++|+|||||++.+.+...
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~~ 41 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASEDI 41 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999899999999964877
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.62 E-value=0.028 Score=28.34 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.022 Score=29.06 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 82999975799994679975709988
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
+.+++|-|+.||||||+++.|+....
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.029 Score=28.29 Aligned_cols=23 Identities=48% Similarity=0.777 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++|+|+.++|||||||.|+|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99988999997999999980998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.52 E-value=0.026 Score=28.58 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699995799999997
Q 000562 163 LTLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~La 182 (1419)
+.+|.|++||||||..+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.51 E-value=0.026 Score=28.61 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=19.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6874882999975799994679975709
Q 000562 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 850 ~~~~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
|-++.|.++-+-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.47 E-value=0.017 Score=29.67 Aligned_cols=20 Identities=50% Similarity=0.684 Sum_probs=9.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997579999467997570
Q 000562 857 LTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~La 876 (1419)
+++++||+|+||||.+-=||
T Consensus 14 vi~lvGptGvGKTTTiAKLA 33 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLA 33 (211)
T ss_dssp EEEEECSCCC----HHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998999999899999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.44 E-value=0.021 Score=29.18 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++++|++|+|||||++.+.+..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989899999997197
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.44 E-value=0.025 Score=28.70 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=13.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.40 E-value=0.024 Score=28.80 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.023 Score=28.84 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.++|++||||||..+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.025 Score=28.63 Aligned_cols=21 Identities=33% Similarity=0.659 Sum_probs=15.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.027 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.455 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.32 E-value=0.032 Score=28.01 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999957999999973
Q 000562 163 LTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG 183 (1419)
+++|.|++||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.31 E-value=0.023 Score=28.84 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.026 Score=28.52 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.30 E-value=0.025 Score=28.63 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.29 E-value=0.026 Score=28.52 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+|++||||||+-+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.29 E-value=0.028 Score=28.37 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=12.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.++|+|.-+||||||+++|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.28 E-value=0.027 Score=28.44 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8829999757999946799757099
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+..+.|.|++|+|||||+..++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.03 Score=28.17 Aligned_cols=21 Identities=24% Similarity=0.466 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.024 Score=28.73 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.27 E-value=0.027 Score=28.48 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299997579999467997570998
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-.+.|+|++||||||+-..|+.+.
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.25 E-value=0.021 Score=29.14 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.23 E-value=0.03 Score=28.14 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+..++++||+|+||||.+-=||.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.19 E-value=0.034 Score=27.83 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=16.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+.+++||+|+||||.+--||-++.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.025 Score=28.63 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999869999579999999739
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-+++|.|.-||||||||+-|...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEEECCCCCHHHHHHHHHHC
T ss_conf 88998648889999999999856
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.12 E-value=0.029 Score=28.28 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+||+|.+.+|||||+++|+|-+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.11 E-value=0.03 Score=28.13 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.11 E-value=0.023 Score=28.91 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=13.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
+++|-|..||||||+++.|+.++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.05 E-value=0.033 Score=27.86 Aligned_cols=25 Identities=48% Similarity=0.731 Sum_probs=22.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 5999986999957999999973949
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
...++.||||+||||+.++||..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 4499987999988899999999987
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.05 E-value=0.028 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.415 Sum_probs=12.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999957999999973
Q 000562 163 LTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG 183 (1419)
-++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.02 E-value=0.026 Score=28.55 Aligned_cols=23 Identities=39% Similarity=0.554 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++.+.+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.028 Score=28.38 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.93 E-value=0.035 Score=27.76 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++++|...||||||+|+|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.92 E-value=0.046 Score=26.97 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
++++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.91 E-value=0.033 Score=27.93 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
++||-|++|||||||-+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.88 E-value=0.035 Score=27.75 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++++|..+||||||+|+|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.83 E-value=0.034 Score=27.79 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.+.+.
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999829
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.76 E-value=0.02 Score=29.33 Aligned_cols=20 Identities=45% Similarity=0.594 Sum_probs=13.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999988733
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.75 E-value=0.035 Score=27.71 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.|+|++||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.71 E-value=0.052 Score=26.65 Aligned_cols=34 Identities=29% Similarity=0.153 Sum_probs=26.1
Q ss_pred EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 62100368748829999757999946799757099
Q 000562 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 844 iL~~vs~~~~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
-++. +...-.|.-+.+.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.026 Score=28.54 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.65 E-value=0.039 Score=27.45 Aligned_cols=49 Identities=8% Similarity=0.133 Sum_probs=26.1
Q ss_pred HCCCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHHH
Q ss_conf 0799484986698899-9899999999999998615995999984591489
Q 000562 322 VGPARVLFMDEISNGL-DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1419)
Q Consensus 322 ~~~~~vlllDEpTsGL-Ds~ta~~I~~~Lr~~~~~~~~t~iisl~qp~~e~ 371 (1419)
+...+++++||.-.=. +..+...++..+.... ..++.++++-..++.+.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~-~~~~~iiits~~~p~~l 144 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLY-LLEKQIILASDRHPQKL 144 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHH-HTTCEEEEEESSCGGGC
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH-HCCCEEEEECCCCCHHC
T ss_conf 762130101126550586577889999999876-31663899548751001
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=92.65 E-value=0.043 Score=27.18 Aligned_cols=40 Identities=30% Similarity=0.283 Sum_probs=25.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEEEECCC
Q ss_conf 882999975799994679975709988-9638889999790
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 893 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~~-~~~~~G~i~i~G~ 893 (1419)
+...++++||+|+||||.+-=||.+.. .+..-+=|..|-+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~ 50 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 50 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 99899998999998899999999999977990699960133
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.044 Score=27.07 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++-+.+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~ 26 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGT 26 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989979899999997099
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.64 E-value=0.038 Score=27.50 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|.+|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999298999999973
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.61 E-value=0.032 Score=27.97 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++.+.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~ 26 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKK 26 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999919899999997198
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.043 Score=27.16 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
+++++|.+|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.60 E-value=0.04 Score=27.39 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=16.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++|+|.+|+|||||++.+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.60 E-value=0.068 Score=25.88 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
-++++|+..+|||||++.|.|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 89999724886999999997041
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.59 E-value=0.022 Score=29.08 Aligned_cols=20 Identities=35% Similarity=0.609 Sum_probs=12.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|.+|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.038 Score=27.51 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 599998699995799999997394
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.++.|+||.++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=92.53 E-value=0.041 Score=27.32 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 767397599998699995799999997394
Q 000562 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 156 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
|-+++|++|.+.||||||||||+..++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 996673589980577747899999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.034 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.51 E-value=0.036 Score=27.68 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999757999946799757099
Q 000562 858 TALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.|.||+|+||||+.++++..
T Consensus 48 lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999789997487999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.48 E-value=0.041 Score=27.33 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=22.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.-.+++++||+|+||||.+--||-++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.038 Score=27.50 Aligned_cols=21 Identities=33% Similarity=0.466 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.46 E-value=0.031 Score=28.04 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.-.++++|.+|+|||||++.+.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.46 E-value=0.024 Score=28.82 Aligned_cols=21 Identities=43% Similarity=0.562 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998789999998448
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.43 E-value=0.033 Score=27.93 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+++|+|.+|+|||||++.+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.38 E-value=0.038 Score=27.48 Aligned_cols=21 Identities=43% Similarity=0.653 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999757999946799757099
Q 000562 858 TALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.+.||+|+||||+.++|+..
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~ 58 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASE 58 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 898799997388999999850
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.047 Score=26.89 Aligned_cols=18 Identities=33% Similarity=0.542 Sum_probs=11.5
Q ss_pred CEEEEEECCCCCCHHHHH
Q ss_conf 829999757999946799
Q 000562 855 GVLTALVGVSGAGKTTLM 872 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl 872 (1419)
+.++.|-|+.|+||||++
T Consensus 163 ~~~~vI~G~pGTGKTt~i 180 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTV 180 (359)
T ss_dssp BSEEEEECCTTSTHHHHH
T ss_pred CCEEEEECCCCCCCEEHH
T ss_conf 885999768988752169
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.038 Score=27.47 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++|+|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.34 E-value=0.044 Score=27.07 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88299997579999467997570998
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.|.++++-|+-||||||+.+.|+.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L 27 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKL 27 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 76899998998886999999999999
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.33 E-value=0.064 Score=26.06 Aligned_cols=28 Identities=36% Similarity=0.505 Sum_probs=24.3
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 7488299997579999467997570998
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.+|.--+|++|.-.||||||++.|.+..
T Consensus 5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 5 VQPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 9997089999724886999999997041
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.044 Score=27.11 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=14.2
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.052 Score=26.63 Aligned_cols=23 Identities=39% Similarity=0.704 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
++.++|.+|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989929999999997286
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=0.08 Score=25.45 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++++|.+|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.26 E-value=0.045 Score=27.01 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=16.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||+|++-+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.23 E-value=0.045 Score=27.04 Aligned_cols=25 Identities=32% Similarity=0.457 Sum_probs=21.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8829999757999946799757099
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.|..+++-|+.||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.22 E-value=0.11 Score=24.56 Aligned_cols=24 Identities=17% Similarity=0.320 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
--.++++|.+|+|||||++-+.+.
T Consensus 5 ~~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 5 ELRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEEECCTTTTHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 379999998997899999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.039 Score=27.42 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++-+.+..
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989939999999997199
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.043 Score=27.16 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.15 E-value=0.048 Score=26.87 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
++||.|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999888887889999999998
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.14 E-value=0.048 Score=26.87 Aligned_cols=23 Identities=35% Similarity=0.380 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.-+.+.||+|+|||++.++||..
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 07998896999889999998620
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.13 E-value=0.042 Score=27.21 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=28.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCC
Q ss_conf 999975799994679975709988963888999979027700112358997258
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQN 910 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~~~~~~G~i~i~G~~~~~~~~~~~~gyv~Q~ 910 (1419)
-+.++||||+|||-|.+.||+...-. -+..++. +|.. .|||-.+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP----Fv~~daT-----~fTe-aGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP----FIKVEAT-----KFTE-VGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC----EEEEEGG-----GGC-----CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCC----EEEEECC-----EEEE-CCEEECC
T ss_conf 47998999988999999999873898----8986255-----1141-1111044
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.12 E-value=0.044 Score=27.12 Aligned_cols=20 Identities=20% Similarity=0.406 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|.+|+|||||++.+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999799698999999973
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.056 Score=26.43 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.1
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8829999757999946799757099
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
|...+.++||+|.|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.09 E-value=0.041 Score=27.27 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.06 E-value=0.033 Score=27.90 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=18.2
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 13104147673975999986999957999999
Q 000562 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLA 180 (1419)
Q Consensus 149 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~ 180 (1419)
.++++.. | -++|.|++||||||.|-.
T Consensus 18 ~~v~~~~-----g-~~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 18 EAVRTTE-----G-PLLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHCCS-----S-CEEEEECTTSCHHHHHHH
T ss_pred HHHHCCC-----C-CEEEEECCCCCHHHHHHH
T ss_conf 9982999-----9-989995298668999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.045 Score=27.01 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++.++|.+|+|||||++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.05 E-value=0.05 Score=26.76 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.03 E-value=0.056 Score=26.45 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=20.1
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 874882999975799994679975709
Q 000562 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 851 ~~~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.00 E-value=0.058 Score=26.33 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.7
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 74882999975799994679975709
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
.+||.+++|-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.00 E-value=0.04 Score=27.36 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHH
Q ss_conf 999986999957999999
Q 000562 163 LTLLLGPPSSGKTTLLLA 180 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~ 180 (1419)
-++|.|+|||||||.|-.
T Consensus 16 ~~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEEECCCTTSCHHHHHHH
T ss_pred CEEEEEECCCCHHHHHHH
T ss_conf 989996288438999999
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.98 E-value=0.052 Score=26.62 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999869999579999999739
Q 000562 163 LTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
-++++|.+|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.048 Score=26.87 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|+|++|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.051 Score=26.69 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.89 E-value=0.053 Score=26.60 Aligned_cols=20 Identities=40% Similarity=0.341 Sum_probs=11.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
.+++|++++|||||+++|.+
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99994789849999999999
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.84 E-value=0.046 Score=27.00 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.81 E-value=0.054 Score=26.54 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=13.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999986999957999999973
Q 000562 163 LTLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG 183 (1419)
-++|+|.+|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.066 Score=25.99 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
-.+++++||+|+||||.+-=||.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 979999899999989999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.79 E-value=0.064 Score=26.06 Aligned_cols=18 Identities=56% Similarity=0.632 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999579999999
Q 000562 164 TLLLGPPSSGKTTLLLAL 181 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~L 181 (1419)
.+|+|+.|+|||||..+|
T Consensus 5 v~iiGh~~~GKTtL~e~l 22 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEAL 22 (267)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999948898099999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.043 Score=27.15 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999999997999999999739
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.048 Score=26.86 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++|+|.+|+|||||++-+.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~~~ 29 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTNA 29 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999979999999997498
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.73 E-value=0.043 Score=27.13 Aligned_cols=20 Identities=30% Similarity=0.405 Sum_probs=11.8
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|++|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.73 E-value=0.048 Score=26.86 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.69 E-value=0.044 Score=27.09 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=20.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
-+++++|.+|+|||||++.+.+.
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 28999998990889999999719
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.68 E-value=0.056 Score=26.41 Aligned_cols=23 Identities=39% Similarity=0.472 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 59999869999579999999739
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
+-++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.67 E-value=0.057 Score=26.39 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.62 E-value=0.051 Score=26.71 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-+|++|.-.+|||||++.|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.58 E-value=0.05 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=13.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997579999467997570
Q 000562 857 LTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~La 876 (1419)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.57 E-value=0.031 Score=28.09 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~ 27 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGE 27 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999908899999998498
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.56 E-value=0.061 Score=26.20 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=13.5
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|.+|+|||||++.+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999970
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.56 E-value=0.06 Score=26.23 Aligned_cols=18 Identities=44% Similarity=0.691 Sum_probs=9.3
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999579999999
Q 000562 164 TLLLGPPSSGKTTLLLAL 181 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~L 181 (1419)
++++|.+|+|||||++-+
T Consensus 9 illlG~~~vGKTsll~~~ 26 (221)
T d1azta2 9 LLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999889999989
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.54 E-value=0.064 Score=26.07 Aligned_cols=20 Identities=35% Similarity=0.320 Sum_probs=9.9
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699995799999997
Q 000562 163 LTLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~La 182 (1419)
+++|.|+.||||||..+.|+
T Consensus 3 iIgiTG~igSGKsTva~~l~ 22 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIM 22 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99997999988999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=91.49 E-value=0.061 Score=26.20 Aligned_cols=20 Identities=55% Similarity=0.762 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99997579999467997570
Q 000562 857 LTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~La 876 (1419)
-+||+|+.|+|||||.+.|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.48 E-value=0.074 Score=25.65 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHH---HCCCCC
Q ss_conf 59999869999579999999---739499
Q 000562 162 RLTLLLGPPSSGKTTLLLAL---AGRLGH 187 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~L---aG~l~~ 187 (1419)
+-.+++|+.|||||||..+| +|....
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCCC
T ss_conf 29999958989989999999996485340
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.053 Score=26.61 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.42 E-value=0.038 Score=27.48 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.42 E-value=0.065 Score=26.04 Aligned_cols=21 Identities=38% Similarity=0.637 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.065 Score=26.03 Aligned_cols=26 Identities=23% Similarity=0.241 Sum_probs=22.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 59999869999579999999739499
Q 000562 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 162 ~~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
+..++=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=91.34 E-value=0.06 Score=26.25 Aligned_cols=21 Identities=48% Similarity=0.608 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999757999946799757099
Q 000562 858 TALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.+.||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.31 E-value=0.061 Score=26.18 Aligned_cols=29 Identities=41% Similarity=0.647 Sum_probs=24.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 73975999986999957999999973949
Q 000562 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 158 i~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+++..-+++.||||+|||+|.+++|+.++
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=0.073 Score=25.71 Aligned_cols=24 Identities=38% Similarity=0.440 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
-.+|+||||.|||++...|+-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.28 E-value=0.067 Score=25.94 Aligned_cols=22 Identities=55% Similarity=0.848 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|-|.-||||||+++.|..+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~ 23 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGA 23 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999899878999999999999
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=91.24 E-value=0.082 Score=25.36 Aligned_cols=28 Identities=46% Similarity=0.571 Sum_probs=23.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3975999986999957999999973949
Q 000562 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+|.-..+++||+|+|||.+.+.|+-.+.
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l~ 78 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATLF 78 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 8766999978886248999999999835
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.23 E-value=0.053 Score=26.57 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++.+.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 89999989909899999998499
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.23 E-value=0.067 Score=25.93 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|+|.+|+|||||++-+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998994999999999739
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.063 Score=26.08 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
++.|+|.+|+|||||++.+.+..
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~~ 26 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKDQ 26 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999989938899999997199
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.19 E-value=0.064 Score=26.07 Aligned_cols=22 Identities=23% Similarity=0.481 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+.+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.18 E-value=0.061 Score=26.19 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|+|.+|+|||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999993989999999829
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.069 Score=25.83 Aligned_cols=18 Identities=50% Similarity=0.730 Sum_probs=11.1
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999869999579999999
Q 000562 164 TLLLGPPSSGKTTLLLAL 181 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~L 181 (1419)
++++|.+|+|||||++-+
T Consensus 5 ivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEECSTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
T ss_conf 999989999989999988
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.072 Score=25.75 Aligned_cols=27 Identities=48% Similarity=0.772 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 975999986999957999999973949
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
+-+-+++.||||+|||+|.++++....
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 886468766998883089999998748
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.12 E-value=0.084 Score=25.31 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4882999975799994679975709
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
+|---++++|..++|||||++.|..
T Consensus 1 k~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 1 KPHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971999994789849999999999
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.07 E-value=0.077 Score=25.56 Aligned_cols=25 Identities=28% Similarity=0.246 Sum_probs=20.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8299997579999467997570998
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
...+.|.||+|.||||+++.++...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8816888989998999999999997
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.06 E-value=0.037 Score=27.57 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.0
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 829999757999946799757099
Q 000562 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 855 G~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+-.+||+|-+.+|||||+++|++-
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 737999789999899999999778
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.06 E-value=0.062 Score=26.15 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299997579999467997570998
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-.+.++|++|+|||||++.+.+..
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 799999999987899999984488
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.068 Score=25.90 Aligned_cols=21 Identities=33% Similarity=0.564 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.066 Score=25.97 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|++|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.91 E-value=0.076 Score=25.59 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=24.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC---CCCCEEEEEEEECCC
Q ss_conf 29999757999946799757099---889638889999790
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR---KTGGIIEGDIYISGY 893 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~---~~~~~~~G~i~i~G~ 893 (1419)
-++.++|.+|+|||||++-+..- .|.|...-.+.+++.
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~ 47 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKV 47 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCE
T ss_conf 77999989999889999989509827888867899997769
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.83 E-value=0.072 Score=25.74 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|+|.+|+|||||++-+.+.
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.77 E-value=0.08 Score=25.43 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+...
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995889999999729
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.76 E-value=0.08 Score=25.45 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=18.5
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 299997579999467997570
Q 000562 856 VLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~La 876 (1419)
-++.++|.+|+|||||++-+.
T Consensus 3 iKivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
T ss_conf 899999899999899999884
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.73 E-value=0.096 Score=24.93 Aligned_cols=20 Identities=35% Similarity=0.370 Sum_probs=10.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
.+++|++.+|||||+++|.+
T Consensus 6 i~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99995889809999999999
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.69 E-value=0.074 Score=25.66 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999757999946799757099
Q 000562 858 TALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+.+-||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.65 E-value=0.082 Score=25.37 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=24.9
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 67397599998699995799999997394
Q 000562 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 157 ~i~pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.+-.|+-.+|.|++|+|||||+..++...
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 64578755686799988789999999977
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.58 E-value=0.072 Score=25.72 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.081 Score=25.42 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.41 E-value=0.089 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||+|++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.091 Score=25.07 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
+++++|.+|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.094 Score=24.98 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.18 E-value=0.097 Score=24.91 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++.++|.+|+|||||++-+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.17 E-value=0.12 Score=24.22 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
-.++.||+|+||||+.+.++..+-
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l~ 49 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYLL 49 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 798889998759999999998210
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=90.12 E-value=0.14 Score=23.92 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=19.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 97599998699995799999997394
Q 000562 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 160 pG~~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.+-..+|+|-|.+|||||+|+|.|+-
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 75278998667544355542542661
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.06 E-value=0.13 Score=24.19 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
..++-||||+||||+.++++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 598888998758999999999846
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.04 E-value=0.086 Score=25.25 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++.++|.+|+|||||++-+.+.
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998995989999999709
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.86 E-value=0.1 Score=24.77 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|.+|+|||+|++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.73 E-value=0.099 Score=24.85 Aligned_cols=72 Identities=19% Similarity=0.295 Sum_probs=39.1
Q ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 99951040999999999999999999999865998999916877789973174989906979999379998625899999
Q 000562 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYF 1065 (1419)
Q Consensus 986 ~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~fD~illL~~gG~~vy~G~~g~~~~~~~~yF 1065 (1419)
+.+++++||.-. +...+...+...+... .....++++.++.+ .+... +.++ -+.+.+.|+.. .++..+.
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~-~~~~~~i~~~~~~~-~i~~~-----l~sr-~~~i~~~~~~~--~~i~~~l 169 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELY-SNSTRFAFACNQSN-KIIEP-----LQSQ-CAILRYSKLSD--EDVLKRL 169 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHT-TTTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred CEEEEEEECCCC-CCHHHHHHHHHHCCCC-CCCEEEEECCCCHH-HHHHH-----HHHH-HHHHHHCCCCH--HHHHHHH
T ss_conf 359999824432-3215778775201123-33336653147430-21067-----8877-77765313322--4567888
Q ss_pred HHC
Q ss_conf 864
Q 000562 1066 EAV 1068 (1419)
Q Consensus 1066 ~~~ 1068 (1419)
..+
T Consensus 170 ~~i 172 (224)
T d1sxjb2 170 LQI 172 (224)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 777
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.1 Score=24.70 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
+++++|.+|+|||||++-+.+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~ 27 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNK 27 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999969999999997199
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.64 E-value=0.091 Score=25.08 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 299997579999467997570998
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
-.+||+|-+.+|||||+++|++-.
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=89.47 E-value=0.16 Score=23.56 Aligned_cols=25 Identities=24% Similarity=0.086 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.+.|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=89.40 E-value=0.12 Score=24.23 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
-.+.+||+|+|||-|.++||..++
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 324418998637899999986443
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.23 E-value=0.098 Score=24.88 Aligned_cols=25 Identities=32% Similarity=0.465 Sum_probs=21.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4882999975799994679975709
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
+|.--+|++|.-++|||||++.|.+
T Consensus 1 kp~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 1 KPHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 9971899995889809999999999
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.18 E-value=0.12 Score=24.40 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
++.|-|.-|||||||++-|.....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899864888999999999985678
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.11 E-value=0.17 Score=23.41 Aligned_cols=28 Identities=25% Similarity=0.527 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4882999975799994679975709988
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
..+-.++++|.+.+|||||+|.|.|++.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 7752789986675443555425426615
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.10 E-value=0.13 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+++++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.06 E-value=0.12 Score=24.26 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
++.++|.+|+|||||++-+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999995989999999729
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.88 E-value=0.067 Score=25.94 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999757999946799757099
Q 000562 857 LTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
.+.+.||+|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.59 E-value=0.13 Score=24.08 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=39.7
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEE-EECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHHHH
Q ss_conf 9951040999999999999999999999865998999-916877789973174989906979999379998625899999
Q 000562 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC-TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYF 1065 (1419)
Q Consensus 987 p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~-tiHqps~~i~~~fD~illL~~gG~~vy~G~~g~~~~~~~~yF 1065 (1419)
.+++++||.- .+.......+.+.+... ...++++ +.+++. .+... +.++ ...+.+-|+.. .++.++.
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~--~~~~~~~~~~~~~~-~i~~~-----i~sr-~~~i~~~~~~~--~~i~~~l 167 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERY--TKNTRFCVLANYAH-KLTPA-----LLSQ-CTRFRFQPLPQ--EAIERRI 167 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHT--TTTEEEEEEESCGG-GSCHH-----HHTT-SEEEECCCCCH--HHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHC--CCCEEECCCCCCHH-HHHHH-----HHHH-HHHHCCCCCCC--CCCCCCC
T ss_conf 1899996632-00023789999886311--20023201267087-75999-----9988-75401235652--0001102
Q ss_pred HHC
Q ss_conf 864
Q 000562 1066 EAV 1068 (1419)
Q Consensus 1066 ~~~ 1068 (1419)
..+
T Consensus 168 ~~I 170 (227)
T d1sxjc2 168 ANV 170 (227)
T ss_dssp HHH
T ss_pred CCC
T ss_conf 122
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.54 E-value=0.13 Score=24.13 Aligned_cols=21 Identities=33% Similarity=0.328 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
.+++|++.+|||||+..|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.38 E-value=0.13 Score=24.01 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
+++.||||+||||+.++++-.+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.37 E-value=0.17 Score=23.34 Aligned_cols=22 Identities=41% Similarity=0.756 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998699995799999997394
Q 000562 164 TLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
.+++||||.|||++...|+-++
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 3998358754479999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.07 E-value=0.13 Score=24.00 Aligned_cols=29 Identities=38% Similarity=0.527 Sum_probs=25.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 76739759999869999579999999739
Q 000562 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 156 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
|-++.|++|.+.||+|+|||||+..++..
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~ 83 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVAN 83 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98666336999648874889999999998
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.97 E-value=0.16 Score=23.47 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999869999579999999739
Q 000562 164 TLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
++++|..|+|||||++-+...
T Consensus 5 iv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999889999999679
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=87.90 E-value=0.24 Score=22.40 Aligned_cols=30 Identities=37% Similarity=0.458 Sum_probs=24.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 673975999986999957999999973949
Q 000562 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 157 ~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.-.|.-..++.||||+|||.|.++|++++.
T Consensus 119 ~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 119 HRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 436886388877998508899999999863
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.82 E-value=0.25 Score=22.26 Aligned_cols=25 Identities=36% Similarity=0.498 Sum_probs=13.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 7488299997579999467997570
Q 000562 852 FRPGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 852 ~~pG~~~ai~G~sGaGKTTLl~~La 876 (1419)
+-.|+..+|.|++|.|||+|+..++
T Consensus 65 igkGQr~~If~~~g~GKt~l~~~i~ 89 (276)
T d2jdid3 65 YAKGGKIGLFGGAGVGKTVLIMELI 89 (276)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 3678877766799989899999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.74 E-value=0.16 Score=23.53 Aligned_cols=97 Identities=11% Similarity=0.181 Sum_probs=51.9
Q ss_pred HHCCCCCEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHC-CEE-EEEECCCEEEEECCCCCCHH-
Q ss_conf 629995104099999-99999999999999998659989999168777899731-749-89906979999379998625-
Q 000562 984 VANPSIVFMDEPTSG-LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF-DEL-LFMKRGGELIYAGPLGSKSC- 1059 (1419)
Q Consensus 984 ~~~p~il~lDEPTsG-LD~~~a~~i~~~lr~l~~~g~tvi~tiHqps~~i~~~f-D~i-llL~~gG~~vy~G~~g~~~~- 1059 (1419)
..+..++++|+--.= -+......+..++-...+.|+.+|+|...|..++ ... +++ --|. +|-++.-.|..+...
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l-~~~~~dL~SRL~-~g~~~~i~p~d~~~~~ 172 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL-DGVSDRLVSRFE-GGILVEIELDNKTRFK 172 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC-TTSCHHHHHHHH-TSEEEECCCCHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHC-CCCCHHHHHHHH-CCEEEEECCCCHHHHH
T ss_conf 76213010112655058657788999999987631663899548751001-343267888861-8568997888279999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 899999864898889999887644110
Q 000562 1060 ELIKYFEAVEGVPKIRPGYNPAAWMLE 1086 (1419)
Q Consensus 1060 ~~~~yF~~~~g~~~~~~~~NpA~~~le 1086 (1419)
-+..+++.. |. .+++ +.++|+++
T Consensus 173 iL~~~a~~r-gl-~l~~--~v~~yl~~ 195 (213)
T d1l8qa2 173 IIKEKLKEF-NL-ELRK--EVIDYLLE 195 (213)
T ss_dssp HHHHHHHHT-TC-CCCH--HHHHHHHH
T ss_pred HHHHHHHHC-CC-CCCH--HHHHHHHH
T ss_conf 999999982-99-9999--99999998
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.69 E-value=0.16 Score=23.49 Aligned_cols=21 Identities=43% Similarity=0.790 Sum_probs=15.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 998699995799999997394
Q 000562 165 LLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 165 ~ilGp~GsGKSTLL~~LaG~l 185 (1419)
+|+|+||.|||++...|+-++
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 687999988999999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.45 E-value=0.18 Score=23.16 Aligned_cols=31 Identities=45% Similarity=0.621 Sum_probs=27.5
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7673975999986999957999999973949
Q 000562 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 156 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
|-++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.28 E-value=0.2 Score=22.87 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=21.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 48829999757999946799757099
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
+|.-...++||+|+|||.|.+.|+..
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~ 76 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAAT 76 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 87669999788862489999999998
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.21 Score=22.74 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 29999757999946799757099
Q 000562 856 VLTALVGVSGAGKTTLMDVLAGR 878 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag~ 878 (1419)
..++|=|.-||||||+++.|+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~ 25 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 19999899888599999999998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.69 E-value=0.21 Score=22.71 Aligned_cols=27 Identities=26% Similarity=0.127 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 488299997579999467997570998
Q 000562 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 853 ~pG~~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
..+..+.+.||+|.|||++..+|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.69 E-value=0.22 Score=22.58 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99986999957999999973
Q 000562 164 TLLLGPPSSGKTTLLLALAG 183 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~LaG 183 (1419)
++++|..|+|||||++-+..
T Consensus 5 ivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999888999998840
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.61 E-value=0.21 Score=22.76 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
++.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=86.29 E-value=0.18 Score=23.12 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999986999957999999973949
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~ 186 (1419)
.+.|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.22 E-value=0.3 Score=21.75 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=24.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 76739759999869999579999999739
Q 000562 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1419)
Q Consensus 156 ~~i~pG~~~~ilGp~GsGKSTLL~~LaG~ 184 (1419)
..+-.|+-.+|.|++|+|||||+..++-.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 56367887776679998989999999998
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.89 E-value=0.28 Score=21.96 Aligned_cols=22 Identities=36% Similarity=0.459 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHC
Q ss_conf 2999975799994679975709
Q 000562 856 VLTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 856 ~~~ai~G~sGaGKTTLl~~Lag 877 (1419)
.++||.|.-||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
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| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.81 E-value=0.26 Score=22.14 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=12.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998699995799999997394
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l 185 (1419)
...+.||+++|||+|+++|+..+
T Consensus 106 ~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 106 TIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998589887789999999983
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.76 E-value=0.23 Score=22.55 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9997579999467997570998
Q 000562 858 TALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
...+||||+|||-|.+.||...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 2441899863789999998644
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.66 E-value=0.23 Score=22.56 Aligned_cols=19 Identities=26% Similarity=0.309 Sum_probs=12.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998699995799999997
Q 000562 164 TLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 164 ~~ilGp~GsGKSTLL~~La 182 (1419)
.+|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=85.50 E-value=0.26 Score=22.16 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=13.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHH
Q ss_conf 88299997579999467997570
Q 000562 854 PGVLTALVGVSGAGKTTLMDVLA 876 (1419)
Q Consensus 854 pG~~~ai~G~sGaGKTTLl~~La 876 (1419)
|---++++|.-++|||||++.|.
T Consensus 2 p~iNi~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 2 PHLNLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHH
T ss_conf 95189999447999999999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.45 E-value=0.17 Score=23.36 Aligned_cols=59 Identities=22% Similarity=0.353 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 732378888889999999999999962999510409999999999999999999998659989999168
Q 000562 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1419)
Q Consensus 959 ~~vg~~~~~glSgGqrkrl~ia~~L~~~p~il~lDEPTsGLD~~~a~~i~~~lr~l~~~g~tvi~tiHq 1027 (1419)
.++..||-..++++-..-+. +.+-.+++.| +..|+-+.|...+-.+.+ .+..+++.+..
T Consensus 99 nliDtPGh~dF~~ev~~al~-----~~D~allVVd-a~eGv~~qT~~~~~~a~~----~~~p~i~viNK 157 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAALR-----VTDGALVVVD-TIEGVCVQTETVLRQALG----ERIKPVVVINK 157 (341)
T ss_dssp EEECCCCCCSSCHHHHHHHH-----TCSEEEEEEE-TTTBSCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHH-----HCCCEEEEEE-CCCCCCHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 99737873889999998875-----2372499986-566820469999999987----69986999877
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=85.31 E-value=0.22 Score=22.60 Aligned_cols=25 Identities=24% Similarity=0.129 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999869999579999999739499
Q 000562 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~LaG~l~~ 187 (1419)
.+.|=|+-||||||+++.|+..+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9999888778899999999998734
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.38 E-value=0.34 Score=21.42 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999975799994679975709
Q 000562 857 LTALVGVSGAGKTTLMDVLAG 877 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag 877 (1419)
++.++|..|+|||||++-+..
T Consensus 4 KivllG~~~vGKTsl~~r~~~ 24 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKI 24 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999888999998840
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=84.08 E-value=0.2 Score=22.97 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
-+.|.|+.|.|||||.+.+++..+
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 089988998529999999987379
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.80 E-value=0.23 Score=22.54 Aligned_cols=18 Identities=33% Similarity=0.477 Sum_probs=10.4
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999757999946799757
Q 000562 858 TALVGVSGAGKTTLMDVL 875 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl~~L 875 (1419)
++++|.-++|||||++.|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.08 E-value=0.39 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99997579999467997570998
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~ 879 (1419)
.++|=|+-|+||||+++.|+...
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.96 E-value=0.41 Score=20.88 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=13.4
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998699995799999997
Q 000562 163 LTLLLGPPSSGKTTLLLALA 182 (1419)
Q Consensus 163 ~~~ilGp~GsGKSTLL~~La 182 (1419)
-++++|+.++|||||...|.
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=82.89 E-value=0.22 Score=22.58 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=19.4
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHH
Q ss_conf 7397599998699995799-99-999
Q 000562 158 IRPSRLTLLLGPPSSGKTT-LL-LAL 181 (1419)
Q Consensus 158 i~pG~~~~ilGp~GsGKST-LL-~~L 181 (1419)
+++|+.++|.+|.|||||+ .+ .++
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~ 31 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIV 31 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 64699499997999978799999999
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.87 E-value=0.23 Score=22.55 Aligned_cols=24 Identities=46% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999975799994679975709988
Q 000562 857 LTALVGVSGAGKTTLMDVLAGRKT 880 (1419)
Q Consensus 857 ~~ai~G~sGaGKTTLl~~Lag~~~ 880 (1419)
-..|+|++|.|||++..-|+.+..
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHHH
T ss_conf 967988898867799999999998
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.65 E-value=0.33 Score=21.52 Aligned_cols=20 Identities=30% Similarity=0.564 Sum_probs=16.7
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 39759999869999579999
Q 000562 159 RPSRLTLLLGPPSSGKTTLL 178 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL 178 (1419)
+.|...+..|-||.|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCC
T ss_conf 99988999736879814221
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=81.91 E-value=0.4 Score=20.98 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.3
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 39759999869999579999
Q 000562 159 RPSRLTLLLGPPSSGKTTLL 178 (1419)
Q Consensus 159 ~pG~~~~ilGp~GsGKSTLL 178 (1419)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.53 E-value=0.39 Score=21.07 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHH
Q ss_conf 999757999946799
Q 000562 858 TALVGVSGAGKTTLM 872 (1419)
Q Consensus 858 ~ai~G~sGaGKTTLl 872 (1419)
+.|.|+.|+||||.|
T Consensus 27 ~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 27 LLIMAGAGSGKTRVL 41 (318)
T ss_dssp EEEEECTTSCHHHHH
T ss_pred EEEEECCCCCHHHHH
T ss_conf 899952986689999
|