Citrus Sinensis ID: 000591

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400--

MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEEEEEHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccccccccHHHccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHccccEEEcccEEEEEcccEEEEEEEccEEEEEEEcccHHHHHHcc

cccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccHHHHccccccccccEEEEccccccccccccccccHcHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHccHHHHHHccccHHcccccccccccccccHHHHHHHccccccccccccccccEEcccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccHcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHccccHHHcccccccEEEEEccHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHEHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEEEEccccEEEEEEEccccccccccHHHHHHHHHHHHcccccccccccccccccEcccccHHcccccccccccccccccEEEccEEEEEEEccEEEEEEEccccEEEEEEcEEEEEEccc

mkrirddvyggsqfkrplttapprgesyglspqlpgtgagggggagggggagagggsgvggggggmtagmgtsqkltTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGhnnlifgfntflpkgyeitldedeappkktvEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTrflpdtsatslshnipfvrnstqrgnersagipplrqmqmdkhrrrdriatshadrdlsvdrpemddEKLMIKMQKEQRRRAEKEnrdrrnrdqddreiehdnnrdfnlqrfpdkkksikkvegfgansslasyddkdaLKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYsngiikrndLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSkkslcndghvsrsvkiedkdREHKREMEVTKEKDRYKEKYYAKSIQeldlsncqrctpsyrllpddypipsasqrseLGAQVLNDHWvsvtsgsedysfkhmrrnqyeeslfrceDDRFELDMLLESVSSTAKRAEELLNSINenkitletpfhlkdHFSALNLRCIERLygdhgldvmDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNhyksldhrsfyfkqqdsknlsTKSLVAEIKQFKENKQTEDDVLFVIAAghrqpviphleygysdsnihEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFlepmlsvpsrpsdvegaedagkarhsgknnsassmvesdgspgpdgtvnsrqpissgngdentstELNNLCRTAlsngdtitkenvldsdrvyrddlscSALQLEkeqknvdisdkrsGIIIQVAVGervansdaspaigaenshgrtgsemmsaslrpcdaakddlkheanvnpvppsevtqgcdlakptllengalrdgakginyheksvgptkiekeegelspngdfeednfgvygdaavktlpkakhgvesrqyqsknekglqhqvvggendadaddedsgnasvagddasgsesagdeysreeheeeedverddvdgkaesegeadgmadqhfvggdcmslpmserfllsvkplakfvpatsveerkdcrvfygndDFYVLFRLHQTLYERIQWAKMNTTGaemkrrtskeascSDLYARFMTALYNLldgsidnakfeDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYeesrkpgkqidSVYYENARVLLHEENIYRiqlssspsrlsIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSaflgkkephAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

mkrirddvyggsqfkrplttapprgeSYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVnkikkrfhndeHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDtsatslshnipfvrnstqrgnersagipplrqmqmdkhrrrdriatshadrdlsvdrpemddeklmikmqkeqrrraekenrdrrnrdqddreiehdnnrdfnlqrfpdkkksikkvegfgansslasydDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYsngiikrndlQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKslcndghvsrsvkiedkdrehkremevtkekdrykekYYAKsiqeldlsncqRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTsgsedysfkhmRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFkenkqtedDVLFVIAAghrqpvipHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDagkarhsgknnsassmvesdgspgpdGTVNSRQPISSGNGDENTSTELNNLCRTalsngdtitkenvldsdrvyRDDLSCSalqlekeqknvdisdkrsGIIIQVAVgervansdaspaiGAENSHGRTGSEMMSASLRPCDAAKDDLKHEAnvnpvppsevtqgcDLAKPTLLENgalrdgakginyheksvgptkiekeegelspngdFEEDNFGVYGDAAVKTLPKAKHgvesrqyqsknekglqhQVVGGENDADADDEDSGNasvagddasgsesagdeysreeheeeedverddvdGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKfvpatsveerkdCRVFYGNDDFYVLFRLHQTLYERIQWAKmnttgaemkrrtskeaSCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEyeesrkpgkqiDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPgtgagggggagggggagagggsgvggggggmtagmgTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQrrraekenrdrrnrdqddreieHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVggendadaddedsgnasVAGDDASGSESAGdeysreeheeeedverddvdGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

*********************************************************************************LTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDE******KTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDT*********************************************************************************************************************************DKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCN********************************KYYAKSIQELDLSNCQRCTPSYRLLPDDY***********GAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLE***********LLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFK************VAEI********TEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPM****************************************************************************IT*ENVLDSDRVYRDDLSCSAL***************SGIIIQVAVG************************************************************************************************************GVYGD*************************************************************************************************FVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTT************SCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEES***GKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLI***

********************************************************************************ALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEIT***************EAI************************************VYSEVASLFEDHADLLEEFTRFL*********************************************************************************************************************************************NQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENID******************************************************ELDLSNCQRCTPSYRLLPDD************GAQVLNDHWVSVTSGSE********RNQYEESLFRCEDDRFELDMLLESVSSTAKRAEEL********************FSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQ**KNLSTKSLVAE****************************HLEYGYSDSNIHEDLYKLVQY****************KLWTTFLEPMLSVPSRPSD****************************************************************************************************************************************************************************************************************************************************************************************************************************************************LSVK**************KDCRVFYGNDDFYVLFRLHQTLYERIQWA**********************YARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLY***************YYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLN***************************************VQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQN*

MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQM**********IATSHADRDLSVDRPEMDDEKLMIKM*********************DREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS**************************************VNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLP*********************QVVGG*********************************************************DGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTT************SCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

**************************************************************************KLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDT****************************************************************************************************************************************IYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENI**************************************************AKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTED***********QPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPS*************************************************************************************************************************************************************************************************************************************************************************************************************************************************PMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFE****LSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVGGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPExxxxxxxxxxxxxxxxxxxxxxxxxxxxDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLxxxxxxxxxxxxxxxxxxxxxKITLETPFHLKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQNL

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1402	2.2.26 [Sep-21-2011]
Q9LFQ3		1367	Paired amphipathic helix	yes	no	0.922	0.946	0.585	0.0
Q9SRH9		1372	Paired amphipathic helix	no	no	0.939	0.959	0.591	0.0
O04539		1326	Paired amphipathic helix	no	no	0.876	0.926	0.506	0.0
O48686		1330	Paired amphipathic helix	no	no	0.893	0.941	0.508	0.0
Q9XIE1		1162	Paired amphipathic helix	no	no	0.400	0.483	0.407	1e-128
Q9XIK6		1173	Paired amphipathic helix	no	no	0.236	0.282	0.591	1e-111
Q96ST3		1273	Paired amphipathic helix	yes	no	0.229	0.252	0.358	8e-55
Q60520		1274	Paired amphipathic helix	yes	no	0.229	0.252	0.352	1e-54
Q62141		1098	Paired amphipathic helix	no	no	0.233	0.298	0.347	4e-51
O75182		1162	Paired amphipathic helix	no	no	0.233	0.282	0.322	6e-47

>sp\|Q9LFQ3\|SNL2_ARATH Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2	Back alignment and function desciption

 Score = 1572 bits (4070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 824/1408 (58%), Positives = 1027/1408 (72%), Gaps = 114/1408 (8%)

Query: 1    MKRIRDDVYG-GSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGV 59
            MKRIRDD+Y  GSQFKRPL ++  RGESY  SP   G                       
Sbjct: 1    MKRIRDDIYATGSQFKRPLGSS--RGESYEQSPITGGGSI-------------------- 38

Query: 60   GGGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGV 119
                     G   +QKLTT DALTYLKEVK+MFQDQR+KYDMFLEVMKDFKAQ+TDT+GV
Sbjct: 39   -------GEGGINTQKLTTDDALTYLKEVKEMFQDQRDKYDMFLEVMKDFKAQKTDTSGV 91

Query: 120  IARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHND 179
            I+RVK+LFKGHNNLIFGFNTFLPKG+EITLD+ EAP KKTVEFEEAI+FVNKIK RF ++
Sbjct: 92   ISRVKELFKGHNNLIFGFNTFLPKGFEITLDDVEAPSKKTVEFEEAISFVNKIKTRFQHN 151

Query: 180  EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPF 239
            E VYKSFLEILNMYRK++KDI EVY+EV++LFEDH+DLLEEFTRFLPD+ A      +  
Sbjct: 152  ELVYKSFLEILNMYRKDNKDITEVYNEVSTLFEDHSDLLEEFTRFLPDSLAPHTEAQL-- 209

Query: 240  VRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKE 299
            +R+  QR ++R +G P +R+M M+K RRR+R   S  DRD SVDR +++D+K M+KM ++
Sbjct: 210  LRSQAQRYDDRGSGPPLVRRMFMEKDRRRERTVASRGDRDHSVDRSDLNDDKSMVKMHRD 269

Query: 300  QRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDK 359
            QR+R +K+NR+RR+RD +D E E DN     LQ F +K+KS +++EGF A S  AS+ +K
Sbjct: 270  QRKRVDKDNRERRSRDLEDGEAEQDN-----LQHFSEKRKSSRRMEGFEAYSGPASHSEK 324

Query: 360  DALKSIYNQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418
            + LKS+YNQ F+FC+KVKE+LCS DDYQAFLKCL+++SNGII+R DLQNLV+D+LGK+ D
Sbjct: 325  NNLKSMYNQAFLFCEKVKERLCSQDDYQAFLKCLNMFSNGIIQRKDLQNLVSDVLGKFPD 384

Query: 419  LMDEFNHFFERCENIDGF--LAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKD 476
            LMDEFN FFERCE+IDGF  LAGVMSKKSL ++ ++SRSVK E+KDREHKR++E  KEK+
Sbjct: 385  LMDEFNQFFERCESIDGFQHLAGVMSKKSLGSEENLSRSVKGEEKDREHKRDVEAAKEKE 444

Query: 477  RYKEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGS 536
            R K+KY  KSIQELDLS+C+RCTPSYRLLP DYPIPS   R + GA VLNDHWVSVTSGS
Sbjct: 445  RSKDKYMGKSIQELDLSDCERCTPSYRLLPPDYPIPSVRHRQKSGAAVLNDHWVSVTSGS 504

Query: 537  EDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFH 596
            EDYSFKHMRRNQYEESLFRCEDDRFELDMLLESV S AK AEELLN I + KI+ E  F 
Sbjct: 505  EDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVGSAAKSAEELLNIIIDKKISFEGSFR 564

Query: 597  LKDHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKV 656
            ++DHF+ALNLRCIERLYGDHGLDV D++RKNPA ALPV+LTRLKQKQ+EWTKCR  FN V
Sbjct: 565  IEDHFTALNLRCIERLYGDHGLDVTDLIRKNPAAALPVILTRLKQKQDEWTKCREGFNVV 624

Query: 657  WAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQ 716
            WA++YAKNHYKSLDHRSFYFKQQDSKNLS K+LV+E+K  KE  Q EDDV+  I+AG+RQ
Sbjct: 625  WADVYAKNHYKSLDHRSFYFKQQDSKNLSAKALVSEVKDLKEKSQKEDDVVLSISAGYRQ 684

Query: 717  PVIPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSD 776
            P+IPHLEY Y D  IHEDL+KLVQ+SCEE+CSTK+Q  K +KLW  FLE ML V  R   
Sbjct: 685  PIIPHLEYDYLDRAIHEDLFKLVQFSCEEICSTKEQTGKVLKLWANFLELMLDVAPRAKG 744

Query: 777  VEGAEDAGKARH-----SGKNNSASSMVESDGSPGPDGTVNSRQPISSGNGDENTSTELN 831
             +  ED  + +H     SG+ N +S  +          ++ SRQ   + NGD + S+ ++
Sbjct: 745  SDSVEDVVETQHQRAFTSGEANESSDAI----------SLVSRQLKFATNGDVHASSGVS 794

Query: 832  NLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISD---KRSGIIIQVA 888
                T L N D+  KEN+ D D   +D  +C+    EK QK+ +I +   KRSG      
Sbjct: 795  KHGETGLLNRDSSGKENLKDGDLANKDVATCA----EKPQKDQEIGNGAAKRSG-----D 845

Query: 889  VGERVANSDASPAIGAENSHGRTGSEMMSASL----RPCDAAKDDLKHEANVNPVPPSEV 944
            V ERVA S +S   G EN++G+ GS   S S     +P +A          ++ V   + 
Sbjct: 846  VDERVATSSSSFPSGVENNNGKVGSRDSSGSRGILSKPSEA----------IDKVDSIQH 895

Query: 945  TQGCDLAKPTLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDA 1004
            TQG D+ +  +L NG   D +K  + +++S GP+KIEKEEGELSP GD  EDNF VY D 
Sbjct: 896  TQGVDIGRIIVLGNGLQSDTSKANSNYDESGGPSKIEKEEGELSPVGD-SEDNFVVYEDR 954

Query: 1005 AVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAG 1064
             +K   K +H VE+     ++                       +AS AG+DASG+ES G
Sbjct: 955  ELKATAKTEHSVEAEGENDEDADDEDGD----------------DASEAGEDASGTESIG 998

Query: 1065 DEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAK 1124
            DE S++++  EE+ E D++DGKAESEGEA+GM + H +    +  P SER LLSVKPL+K
Sbjct: 999  DECSQDDNGVEEEGEHDEIDGKAESEGEAEGM-ESHLIEDKGL-FPSSERVLLSVKPLSK 1056

Query: 1125 FVPATSV--EERKDCRVFYGNDDFYVLFRLHQT------------LYERIQWAKMNTTGA 1170
             + A ++  E++KD RVFYGNDDFYVLFRLH+             LYERI  AK   +G+
Sbjct: 1057 HIAAAALVDEKKKDSRVFYGNDDFYVLFRLHRVSAIDSYDLLSHILYERILSAKTYCSGS 1116

Query: 1171 EMKRRTSKEASCSDLYARFMTALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYR 1230
            EMK R +K+    D YARFM AL++LL+GS +N+KFEDECRAIIGNQSYVLFTL+KL+Y+
Sbjct: 1117 EMKLRNTKDTCSPDPYARFMNALFSLLNGSAENSKFEDECRAIIGNQSYVLFTLEKLIYK 1176

Query: 1231 LCKQLQTVAADEMDNKLIQLYEYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPS 1290
            L KQLQ V AD+MDNKL+QLYEYE SR+PG+  DSVYYENAR+LLHEENIYR++ SSSPS
Sbjct: 1177 LVKQLQAVVADDMDNKLLQLYEYENSRRPGRVFDSVYYENARILLHEENIYRLECSSSPS 1236

Query: 1291 RLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDE 1350
            RLSIQLMDN+IEKP+A+AV+M+P F +YL N+FLS   GKKE   +VL+RN R + GLD+
Sbjct: 1237 RLSIQLMDNIIEKPDAYAVSMEPTFTSYLQNEFLSNSSGKKELQDIVLQRNMRGYNGLDD 1296

Query: 1351 LSAACMAMEGVQLVNGLECRIACNSYKV 1378
            L+ AC AMEGVQ++NGLEC+++C+SYK+
Sbjct: 1297 LAVACKAMEGVQVINGLECKMSCSSYKI 1324

Acts as a transcriptional repressor. Plays roles in regulating gene expression and genome stability.
Arabidopsis thaliana (taxid: 3702)

>sp\|Q9SRH9\|SNL1_ARATH Paired amphipathic helix protein Sin3-like 1 OS=Arabidopsis thaliana GN=SNL1 PE=1 SV=2	Back alignment and function description

>sp\|O04539\|SNL4_ARATH Paired amphipathic helix protein Sin3-like 4 OS=Arabidopsis thaliana GN=SNL4 PE=3 SV=3	Back alignment and function description

>sp\|O48686\|SNL3_ARATH Paired amphipathic helix protein Sin3-like 3 OS=Arabidopsis thaliana GN=SNL3 PE=1 SV=3	Back alignment and function description

>sp\|Q9XIE1\|SNL5_ARATH Paired amphipathic helix protein Sin3-like 5 OS=Arabidopsis thaliana GN=SNL5 PE=2 SV=3	Back alignment and function description

>sp\|Q9XIK6\|SNL6_ARATH Paired amphipathic helix protein Sin3-like 6 OS=Arabidopsis thaliana GN=SNL6 PE=3 SV=2	Back alignment and function description

>sp\|Q96ST3\|SIN3A_HUMAN Paired amphipathic helix protein Sin3a OS=Homo sapiens GN=SIN3A PE=1 SV=2	Back alignment and function description

>sp\|Q60520\|SIN3A_MOUSE Paired amphipathic helix protein Sin3a OS=Mus musculus GN=Sin3a PE=1 SV=3	Back alignment and function description

>sp\|Q62141\|SIN3B_MOUSE Paired amphipathic helix protein Sin3b OS=Mus musculus GN=Sin3b PE=1 SV=2	Back alignment and function description

>sp\|O75182\|SIN3B_HUMAN Paired amphipathic helix protein Sin3b OS=Homo sapiens GN=SIN3B PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1402
359488765		1395	PREDICTED: paired amphipathic helix prot	0.957	0.962	0.672	0.0
255552758		1289	conserved hypothetical protein [Ricinus	0.910	0.990	0.700	0.0
296087759		1359	unnamed protein product [Vitis vinifera]	0.932	0.961	0.661	0.0
356550937		1371	PREDICTED: paired amphipathic helix prot	0.939	0.960	0.666	0.0
356573426		1383	PREDICTED: paired amphipathic helix prot	0.945	0.958	0.672	0.0
297832804		1378	hypothetical protein ARALYDRAFT_477381 [	0.938	0.955	0.600	0.0
334187689		1355	paired amphipathic helix protein Sin3-li	0.922	0.954	0.590	0.0
297811635		1372	hypothetical protein ARALYDRAFT_488346 [	0.930	0.950	0.594	0.0
145358042		1367	paired amphipathic helix protein Sin3-li	0.922	0.946	0.585	0.0
357496209		1404	Paired amphipathic helix protein Sin3 [M	0.945	0.944	0.633	0.0

>gi\|359488765\|ref\|XP_002281791.2\| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Vitis vinifera]	Back alignment and taxonomy information

 Score = 1772 bits (4590), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 933/1387 (67%), Positives = 1099/1387 (79%), Gaps = 44/1387 (3%)

Query: 1    MKRIRDDVYGGSQFKRPLTTAPPRGESYGLSPQLPGTGAGGGGGAGGGGGAGAGGGSGVG 60
            MKR+RDD Y GSQFKRP  ++  RG+SYG  PQ+PG G GGGGG                
Sbjct: 1    MKRLRDDGYVGSQFKRPYGSS--RGDSYG-QPQIPGGGGGGGGGG--------------- 42

Query: 61   GGGGGMTAGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVI 120
                    G G+  KLTT+DALTYLKEVK+MFQDQREKYD FLEVMKDFKAQRTDTAGVI
Sbjct: 43   -----GGGGGGSMPKLTTTDALTYLKEVKEMFQDQREKYDTFLEVMKDFKAQRTDTAGVI 97

Query: 121  ARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAITFVNKIKKRFHNDE 180
            ARVK+LFKGHNNLIFGFNTFLPKGYEITL EDE PPKKTVEFEEAI FVNKIKKRF ND+
Sbjct: 98   ARVKELFKGHNNLIFGFNTFLPKGYEITLPEDEPPPKKTVEFEEAINFVNKIKKRFQNDD 157

Query: 181  HVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIPFV 240
            HVYKSFL+ILNMYR+E+KDI+EVY EVA LF DH DLLEEF RFLP++SA   + ++P+ 
Sbjct: 158  HVYKSFLDILNMYRRENKDIHEVYREVAVLFSDHKDLLEEFVRFLPESSAMHSAQHLPYG 217

Query: 241  RNSTQRGNERSAGIPPLRQMQMDKHR-RRDRIATSHADRDLSVDRPEMDDEKLMIKMQKE 299
            RN+ QR +ER++  P LRQM +DK R  RD+I  SHADRD S+ R ++DD+K M+K+ KE
Sbjct: 218  RNTIQRYDERNSSTPTLRQMHVDKQRCWRDKIIPSHADRDSSIYRTDLDDDKAMMKIHKE 277

Query: 300  QRRRAEKENRDRRNRDQDDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDK 359
            Q+RR EKENRDRRNRDQDDRE  H+NNRDFNLQR P+K+KS +KVEGFGAN  LASYDDK
Sbjct: 278  QKRRTEKENRDRRNRDQDDREPSHENNRDFNLQRLPEKRKSSRKVEGFGANPILASYDDK 337

Query: 360  DALKSIYNQGFIFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418
            DALKS+ NQ FIFC+KVKEKLCS DDYQAFLKCLHIYS  II R++LQ LV DLLGKY D
Sbjct: 338  DALKSMCNQEFIFCEKVKEKLCSMDDYQAFLKCLHIYSKEIISRSELQTLVADLLGKYPD 397

Query: 419  LMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRY 478
            LMD FN F ERCENIDGFLAGVM+KKSL ++GH+SRS++ E+KD+E KREME  KEKDR 
Sbjct: 398  LMDGFNEFLERCENIDGFLAGVMNKKSLWDEGHLSRSMRAEEKDKEQKREMEGAKEKDRC 457

Query: 479  KEKYYAKSIQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSED 538
            +EKY  KSIQELDLSNC+RCTPSYRLLP+DYPI  A +RSELGAQVLND WVSVTSGSED
Sbjct: 458  REKYMGKSIQELDLSNCERCTPSYRLLPEDYPIAIAKERSELGAQVLNDQWVSVTSGSED 517

Query: 539  YSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLK 598
            YSFKHMRRNQYEESLFRCEDDRFELDMLLESV+S AK AE+LLNSI++N +   +P  ++
Sbjct: 518  YSFKHMRRNQYEESLFRCEDDRFELDMLLESVTSAAKHAEDLLNSISDNSVG--SPIQIE 575

Query: 599  DHFSALNLRCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWA 658
             H + LNLRCI+RLYGDH LD +D LRKN ++ALPV+L+RLKQK EEW++CRSDFNKVWA
Sbjct: 576  GHLTVLNLRCIDRLYGDHALDALDTLRKNTSLALPVILSRLKQKHEEWSRCRSDFNKVWA 635

Query: 659  EIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPV 718
            EIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIK+ KE KQ EDD+L  IAAG+R+ V
Sbjct: 636  EIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEEKQNEDDMLLAIAAGNRRFV 695

Query: 719  IPHLEYGYSDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVE 778
             P+LE+ YSD NIH+DLYKLVQYSCEE+C+T +QLNK M+LWTTFLEPML VPSR    E
Sbjct: 696  NPNLEFEYSDVNIHDDLYKLVQYSCEEVCTTNEQLNKVMRLWTTFLEPMLGVPSRVDREE 755

Query: 779  GAEDAGKARHSGKNNSASSMVESDGSPGPDGTV-NSRQPISSGNGDENTSTELNNLCRTA 837
            GAED  KARH    +SASS  E DGSPG +  V NS+QP  + NGDEN   E  N CR +
Sbjct: 756  GAEDVAKARHGAVKSSASSTGERDGSPGAEAAVMNSKQPNLASNGDENAIPESANSCRAS 815

Query: 838  LSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSD 897
            L NGD++ K++  DS  + +DD      +LEKE KNV  ++K SG  IQV  GE++ +S+
Sbjct: 816  LVNGDSLPKDD-HDSSHISKDD----PPRLEKELKNVAATEKISGFNIQVGSGEQLIDSN 870

Query: 898  ASPAIGAENSHGRTGSEMMSASL----RPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKP 953
            AS A GAEN+ GR   E+MS  +    RP + A +    EA+ +       ++G D+ + 
Sbjct: 871  ASLATGAENNLGRAHMEVMSGHVSTPSRPGNVAIE----EAHEHKPGFDASSEGGDVMRT 926

Query: 954  TLLENGALRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAK 1013
             +  NG L +G K   YH +SVGP+KIEKEEGELSPNGDFEEDNF VYGDA+ + +P AK
Sbjct: 927  VISANGVLSEGTKLNKYHAESVGPSKIEKEEGELSPNGDFEEDNFVVYGDASTQAVPLAK 986

Query: 1014 HGVESRQYQSKNEKGLQHQVVGGENDADADDEDSGNASVAGDDASGSESAGDEYSREEHE 1073
            H  E RQ+Q+ + +    QV GGEN ADADDEDS N S AG+D S SESAGDE SR E E
Sbjct: 987  HSSERRQFQAGDGQERDCQVAGGENGADADDEDSENVSEAGEDVSASESAGDECSRGEQE 1046

Query: 1074 EEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSV-- 1131
            EEED E D++DGKAESEGEADG+AD +FVGG+ + LP+SERFL +VKPLAK V A+S+  
Sbjct: 1047 EEEDAEHDELDGKAESEGEADGVADANFVGGNGVILPLSERFLPTVKPLAKHV-ASSLHD 1105

Query: 1132 EERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMT 1191
            +E+ D RVFYGND FYVLFRLH+ LYERI  AK+N+T AEMK R SK+ +  D Y+RFM+
Sbjct: 1106 KEKNDSRVFYGNDTFYVLFRLHRVLYERILSAKVNSTSAEMKWRASKDTNPPDFYSRFMS 1165

Query: 1192 ALYNLLDGSIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLY 1251
            ALYNLLDGS DNAKFED+CRAI+GNQSYVLFTLDKL+Y+L KQLQTVA DEMDNKL+QLY
Sbjct: 1166 ALYNLLDGSSDNAKFEDDCRAILGNQSYVLFTLDKLIYKLVKQLQTVATDEMDNKLLQLY 1225

Query: 1252 EYEESRKPGKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTM 1311
            +YE+SR+ GK +DSVY+ENA V LH++NIYR + SSSPSRLSIQLMD+  EKPE  AV+M
Sbjct: 1226 DYEKSRRSGKFVDSVYHENACVFLHDDNIYRFEYSSSPSRLSIQLMDSGSEKPEVVAVSM 1285

Query: 1312 DPNFAAYLLNDFLSAFLGKKEPHAVVLRRNKRRFEGLDELSAACMAMEGVQLVNGLECRI 1371
            DPNFAAYL NDFLS+   KKEP  ++L+RNK ++ GLD+LSA C+AME V LVNGLEC+I
Sbjct: 1286 DPNFAAYLHNDFLSSRPSKKEPLGIMLQRNKHKYGGLDDLSATCLAMEDVHLVNGLECKI 1345

Query: 1372 ACNSYKV 1378
            AC S K+
Sbjct: 1346 ACTSSKI 1352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255552758\|ref\|XP_002517422.1\| conserved hypothetical protein [Ricinus communis] gi\|223543433\|gb\|EEF44964.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|296087759\|emb\|CBI35015.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356550937\|ref\|XP_003543838.1\| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|356573426\|ref\|XP_003554862.1\| PREDICTED: paired amphipathic helix protein Sin3-like 2-like [Glycine max]	Back alignment and taxonomy information

>gi\|297832804\|ref\|XP_002884284.1\| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata] gi\|297330124\|gb\|EFH60543.1\| hypothetical protein ARALYDRAFT_477381 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334187689\|ref\|NP_001190311.1\| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] gi\|332004723\|gb\|AED92106.1\| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297811635\|ref\|XP_002873701.1\| hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata] gi\|297319538\|gb\|EFH49960.1\| hypothetical protein ARALYDRAFT_488346 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|145358042\|ref\|NP_197006.2\| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana] gi\|296439819\|sp\|Q9LFQ3.2\|SNL2_ARATH RecName: Full=Paired amphipathic helix protein Sin3-like 2 gi\|332004722\|gb\|AED92105.1\| paired amphipathic helix protein Sin3-like 2 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357496209\|ref\|XP_003618393.1\| Paired amphipathic helix protein Sin3 [Medicago truncatula] gi\|355493408\|gb\|AES74611.1\| Paired amphipathic helix protein Sin3 [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1402
TAIR\|locus:2100277		1372	SNL1 "AT3G01320" [Arabidopsis	0.895	0.915	0.581	0.0
TAIR\|locus:2147845		1367	SNL2 "AT5G15020" [Arabidopsis	0.601	0.617	0.613	2.2e-286
DICTYBASE\|DDB_G0281045		1934	DDB_G0281045 "paired amphipath	0.236	0.171	0.365	9.4e-106
RGD\|1311598		1282	Sin3a "SIN3 transcription regu	0.211	0.230	0.367	1.4e-98
UNIPROTKB\|F1SJ69		1227	SIN3A "Uncharacterized protein	0.211	0.241	0.367	2.3e-98
UNIPROTKB\|F1MTR3		1274	SIN3A "Uncharacterized protein	0.211	0.232	0.367	4.6e-98
UNIPROTKB\|J9P8L1		1274	SIN3A "Uncharacterized protein	0.211	0.232	0.367	1.4e-97
ZFIN\|ZDB-GENE-070620-3		1276	sin3aa "SIN3 homolog A, transc	0.223	0.245	0.355	3.5e-97
MGI\|MGI:107157		1274	Sin3a "transcriptional regulat	0.211	0.232	0.367	8.2e-97
UNIPROTKB\|Q96ST3		1273	SIN3A "Paired amphipathic heli	0.211	0.232	0.367	1.3e-96

TAIR\|locus:2100277 SNL1 "AT3G01320" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3638 (1285.7 bits), Expect = 0., Sum P(2) = 0.
 Identities = 758/1303 (58%), Positives = 926/1303 (71%)

Query:    73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNN 132
             SQKLTT+DAL+YL+EVK+MFQDQREKYD FLEVMKDFKAQRTDT GVIARVK+LFKGHNN
Sbjct:    50 SQKLTTNDALSYLREVKEMFQDQREKYDRFLEVMKDFKAQRTDTGGVIARVKELFKGHNN 109

Query:   133 LIFGFNTFLPKGYEITL-DEDEAPPKKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILN 191
             LI+GFNTFLPKGYEITL +ED+A PKKTVEFE+AI FVNKIK RF +DEHVYKSFLEILN
Sbjct:   110 LIYGFNTFLPKGYEITLIEEDDALPKKTVEFEQAINFVNKIKMRFKHDEHVYKSFLEILN 169

Query:   192 MYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHNIP-FVRNSTQRGNER 250
             MYRKE+K+I EVY+EV+ LF+ H DLLE+FTRFLP   A+  SH+     R+  Q+ ++R
Sbjct:   170 MYRKENKEIKEVYNEVSILFQGHLDLLEQFTRFLP---ASLPSHSAAQHSRSQAQQYSDR 226

Query:   251 SAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQXXXXXXXXXX 310
              +  P L QMQ++K RRR+R      D   SV+R +++D+K M+K+Q+EQ          
Sbjct:   227 GSDPPLLHQMQVEKERRRERAVALRGD--YSVERYDLNDDKTMVKIQREQRKRLDKENRA 284

Query:   311 XXXXXXXXXXXXHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGF 370
                          DN     L  FP+K+KS ++ E   A S  AS+ +KD LKS+Y Q F
Sbjct:   285 RRGRDLDDREAGQDN-----LHHFPEKRKSSRRAEALEAYSGSASHSEKDNLKSMYKQAF 339

Query:   371 IFCDKVKEKLCS-DDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFER 429
             +FC+KVK++LCS DDYQ FLKCL+I+SNGII+R DLQNLV+DLLGK+ DLMDEFN FFER
Sbjct:   340 VFCEKVKDRLCSQDDYQTFLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQFFER 399

Query:   430 CENI-DGF--LAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKS 486
             CE+I DGF  LAGVMSKK   ++  +SR +K+E+K+ EHK E+E  KE ++ K++Y  KS
Sbjct:   400 CESITDGFQRLAGVMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKETEQCKKEYMGKS 459

Query:   487 IQELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRR 546
             IQELDLS+C+ CTPSYRLLP DYPIP ASQRSELGA+VLNDHWVSVTSGSEDYSFKHMRR
Sbjct:   460 IQELDLSDCECCTPSYRLLPADYPIPIASQRSELGAEVLNDHWVSVTSGSEDYSFKHMRR 519

Query:   547 NQYEESLFRCEDDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSALNL 606
             NQYEESLFRCEDDRFELDMLLESVSS A+ AE LLN I E KI+    F ++DHF+ALNL
Sbjct:   520 NQYEESLFRCEDDRFELDMLLESVSSAARSAESLLNIITEKKISFSGSFRIEDHFTALNL 579

Query:   607 RCIERLYGDHGLDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRSDFNKVWAEIYAKNHY 666
             RCIERLYGDHGLDV+DIL KNPA ALPV+LTRLKQKQ EW KCR DF+KVWA +YAKNHY
Sbjct:   580 RCIERLYGDHGLDVIDILNKNPATALPVILTRLKQKQGEWKKCRDDFDKVWANVYAKNHY 639

Query:   667 KSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPHLEYGY 726
             KSLDHRSFYFKQQDSKNLS KSL+AEIK+ KE  Q +DDVL  I+AG+RQP+ P+LEY Y
Sbjct:   640 KSLDHRSFYFKQQDSKNLSAKSLLAEIKELKEKSQNDDDVLLSISAGYRQPINPNLEYEY 699

Query:   727 SDSNIHEDLYKLVQYSCEEMCSTKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAG-K 785
              +  IHED++K+VQ+SCEE+CSTK+QL+K ++LW  FLE +L VP R    +  ED    
Sbjct:   700 LNRAIHEDMFKVVQFSCEELCSTKEQLSKVLRLWENFLEAVLGVPPRAKGTDLVEDVVIN 759

Query:   786 ARHSGKNNSASSMVESDGSPGPD-GTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTI 844
              +    N+S S   E+  S G D   + SR+  S+ NGDEN+S+         L N D+ 
Sbjct:   760 PKTLDVNHSTSPNGEAAVSSGGDTARLASRKLKSAANGDENSSSGTFKH-GIGLLNKDST 818

Query:   845 TKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKRSGIIIQVAVGERVANSDASPAIGA 904
              KEN+ D +   RD ++CSA++ +KEQ+  + ++KR G  I + + ER A S  S   GA
Sbjct:   819 GKENLEDVEIANRDGVACSAVKPQKEQETGNEAEKRFGKPIPMDISERAAISSISIPSGA 878

Query:   905 ENSHGRTGSEMMSAS----LRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGA 960
             EN+H   G E++  +     +P D   D + H+  V+ +     TQG D+    +L NG 
Sbjct:   879 ENNHCVVGKEVLPGAHEIQAKPSDTLTD-IHHD--VDSIETVHSTQGGDVGNSIVLANGL 935

Query:   961 LRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQ 1020
               D +KG    +   GP++ EKEEGELSPNGDFE DNFGVY D          HGV+S  
Sbjct:   936 RSDSSKGTRNSDDPEGPSRNEKEEGELSPNGDFE-DNFGVYKD----------HGVKST- 983

Query:  1021 YQSKNEKGLQHQVVXXXXXXXXXXXXXXXXXVAGDDASGSESAGXXXXXXXXXXXXXXXX 1080
               SK E   + +V                   A + ASG+ES G                
Sbjct:   984 --SKPENSAEAEVEADAEVENEDDADDVDSENASE-ASGTESGGDVCSQDEDREEENGEH 1040

Query:  1081 XXXXGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVKPLAKFVPATSVEER-KDCRV 1139
                 GKAESEGEA+GM D H + G+   LP SER LLSV+PL+K V A   +ER KD +V
Sbjct:  1041 DEIDGKAESEGEAEGM-DPHLLEGESELLPQSERVLLSVRPLSKHVAAVLCDERTKDLQV 1099

Query:  1140 FYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDG 1199
             FYGNDDFYVLFRLHQ LYERI +AK N +G E+K +  K+ +  D YARFM  LY LLDG
Sbjct:  1100 FYGNDDFYVLFRLHQILYERILYAKRNCSGGELKSKNLKDTNAGDPYARFMRVLYGLLDG 1159

Query:  1200 SIDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKP 1259
             S +N KFEDECRAIIGNQSYVLFTLDKL+YRL KQLQ + ADEMDNKL+QLYEYE+SRKP
Sbjct:  1160 SAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQLYEYEKSRKP 1219

Query:  1260 GKQIDSVYYENARVLLHEENIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYL 1319
             G+ IDSVYYEN RVL+HEENIYR++ SS PSRLSIQLMDN+IEKPEA+AV+MDP FA+Y+
Sbjct:  1220 GRVIDSVYYENVRVLVHEENIYRLECSSLPSRLSIQLMDNIIEKPEAYAVSMDPTFASYM 1279

Query:  1320 LNDFLSAFLGKKEP-HAVVLRRNKRRFEGLDELSAACMAMEGV 1361
               + LS   GKKE  H +VL+RN     GL +L  A   +E V
Sbjct:  1280 QTELLSVSSGKKEEGHDIVLQRN---LTGLYDLCKAMEGVEVV 1319

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

GO:0010048 "vernalization response" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

TAIR\|locus:2147845 SNL2 "AT5G15020" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

DICTYBASE\|DDB_G0281045 DDB_G0281045 "paired amphipathic helix (PAH) containing protein" [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

RGD\|1311598 Sin3a "SIN3 transcription regulator homolog A (yeast)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SJ69 SIN3A "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MTR3 SIN3A "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P8L1 SIN3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-070620-3 sin3aa "SIN3 homolog A, transcription regulator (yeast) a" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:107157 Sin3a "transcriptional regulator, SIN3A (yeast)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96ST3 SIN3A "Paired amphipathic helix protein Sin3a" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LFQ3	SNL2_ARATH	No assigned EC number	0.5852	0.9229	0.9465	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1402
pfam08295		101	pfam08295, Sin3_corepress, Sin3 family co-represso	7e-50
smart00761		102	smart00761, HDAC_interact, Histone deacetylase (HD	1e-45
COG5602		1163	COG5602, SIN3, Histone deacetylase complex, SIN3 c	8e-45
COG5602		1163	COG5602, SIN3, Histone deacetylase complex, SIN3 c	5e-36
pfam02671		47	pfam02671, PAH, Paired amphipathic helix repeat	1e-16
pfam02671		47	pfam02671, PAH, Paired amphipathic helix repeat	2e-16
pfam02671		47	pfam02671, PAH, Paired amphipathic helix repeat	2e-10
COG5602		1163	COG5602, SIN3, Histone deacetylase complex, SIN3 c	5e-10
COG5602		1163	COG5602, SIN3, Histone deacetylase complex, SIN3 c	3e-07
pfam07172		91	pfam07172, GRP, Glycine rich protein family	1e-06
pfam07172		91	pfam07172, GRP, Glycine rich protein family	3e-06
pfam07172		91	pfam07172, GRP, Glycine rich protein family	4e-06
pfam13488		46	pfam13488, Gly-zipper_Omp, Glycine zipper	1e-05
PRK06958		182	PRK06958, PRK06958, single-stranded DNA-binding pr	2e-05
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-05
pfam07172		91	pfam07172, GRP, Glycine rich protein family	3e-05
pfam10439		65	pfam10439, Bacteriocin_IIc, Bacteriocin class II w	4e-05
pfam10439		65	pfam10439, Bacteriocin_IIc, Bacteriocin class II w	5e-05
pfam13441		45	pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	5e-05
pfam12810		248	pfam12810, Gly_rich, Glycine rich protein	5e-05
PLN03138		796	PLN03138, PLN03138, Protein TOC75; Provisional	7e-05
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	8e-05
pfam10439		65	pfam10439, Bacteriocin_IIc, Bacteriocin class II w	8e-05
pfam13436		116	pfam13436, Gly-zipper_OmpA, Glycine-zipper contain	9e-05
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-04
pfam13441		45	pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	1e-04
PLN03138		796	PLN03138, PLN03138, Protein TOC75; Provisional	1e-04
PHA00370		297	PHA00370, III, attachment protein	1e-04
pfam07172		91	pfam07172, GRP, Glycine rich protein family	2e-04
PRK06958		182	PRK06958, PRK06958, single-stranded DNA-binding pr	2e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	2e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-04
pfam10439		65	pfam10439, Bacteriocin_IIc, Bacteriocin class II w	3e-04
pfam12810		248	pfam12810, Gly_rich, Glycine rich protein	3e-04
PHA00370		297	PHA00370, III, attachment protein	3e-04
pfam02084		239	pfam02084, Bindin, Bindin	3e-04
pfam05433		42	pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom	3e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	3e-04
PLN03138		796	PLN03138, PLN03138, Protein TOC75; Provisional	4e-04
PRK06958		182	PRK06958, PRK06958, single-stranded DNA-binding pr	5e-04
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-04
pfam10439		65	pfam10439, Bacteriocin_IIc, Bacteriocin class II w	5e-04
pfam07172		91	pfam07172, GRP, Glycine rich protein family	6e-04
pfam13441		45	pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	6e-04
pfam07172		91	pfam07172, GRP, Glycine rich protein family	7e-04
PRK07772		186	PRK07772, PRK07772, single-stranded DNA-binding pr	8e-04
PRK13875		440	PRK13875, PRK13875, conjugal transfer protein TrbL	8e-04
pfam07172		91	pfam07172, GRP, Glycine rich protein family	0.001
PRK06958		182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.001
pfam13436		116	pfam13436, Gly-zipper_OmpA, Glycine-zipper contain	0.001
PRK06958		182	PRK06958, PRK06958, single-stranded DNA-binding pr	0.002
pfam05433		42	pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom	0.002
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
PRK07772		186	PRK07772, PRK07772, single-stranded DNA-binding pr	0.002
PRK07772		186	PRK07772, PRK07772, single-stranded DNA-binding pr	0.002
PRK13875		440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.002
pfam09579		81	pfam09579, Spore_YtfJ, Sporulation protein YtfJ (S	0.002
pfam10961		91	pfam10961, DUF2763, Protein of unknown function (D	0.002
pfam10961		91	pfam10961, DUF2763, Protein of unknown function (D	0.002
PTZ00146		293	PTZ00146, PTZ00146, fibrillarin; Provisional	0.003
pfam13441		45	pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	0.003
pfam05433		42	pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom	0.003
PRK07772		186	PRK07772, PRK07772, single-stranded DNA-binding pr	0.003
pfam05433		42	pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM dom	0.004
PRK13875		440	PRK13875, PRK13875, conjugal transfer protein TrbL	0.004
COG4371		334	COG4371, COG4371, Predicted membrane protein [Func	0.004
pfam07466		280	pfam07466, DUF1517, Protein of unknown function (D	0.004

>gnl\|CDD\|191990 pfam08295, Sin3_corepress, Sin3 family co-repressor	Back alignment and domain information

 Score =  170 bits (434), Expect = 7e-50
 Identities = 58/96 (60%), Positives = 68/96 (70%)

Query: 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESL 553
           NC+R  PSYRLLP   P P  S R EL  +VLND WVSV + SED  FK  R+NQYEE+L
Sbjct: 1   NCERLGPSYRLLPKSEPNPPCSGRDELCKEVLNDTWVSVPTWSEDSGFKAHRKNQYEEAL 60

Query: 554 FRCEDDRFELDMLLESVSSTAKRAEELLNSINENKI 589
           FRCED+RFELDM++ES  ST K  EELLN I++   
Sbjct: 61  FRCEDERFELDMVIESNRSTIKLLEELLNKISDMSD 96

This domain is found on transcriptional regulators. It forms interactions with histone deacetylases. Length = 101

>gnl\|CDD\|214808 smart00761, HDAC_interact, Histone deacetylase (HDAC) interacting	Back alignment and domain information

>gnl\|CDD\|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|202341 pfam02671, PAH, Paired amphipathic helix repeat	Back alignment and domain information

>gnl\|CDD\|202341 pfam02671, PAH, Paired amphipathic helix repeat	Back alignment and domain information

>gnl\|CDD\|202341 pfam02671, PAH, Paired amphipathic helix repeat	Back alignment and domain information

>gnl\|CDD\|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|205666 pfam13488, Gly-zipper_Omp, Glycine zipper	Back alignment and domain information

>gnl\|CDD\|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide	Back alignment and domain information

>gnl\|CDD\|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide	Back alignment and domain information

>gnl\|CDD\|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	Back alignment and domain information

>gnl\|CDD\|221784 pfam12810, Gly_rich, Glycine rich protein	Back alignment and domain information

>gnl\|CDD\|215598 PLN03138, PLN03138, Protein TOC75; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide	Back alignment and domain information

>gnl\|CDD\|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like membrane domain	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	Back alignment and domain information

>gnl\|CDD\|215598 PLN03138, PLN03138, Protein TOC75; Provisional	Back alignment and domain information

>gnl\|CDD\|164795 PHA00370, III, attachment protein	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide	Back alignment and domain information

>gnl\|CDD\|221784 pfam12810, Gly_rich, Glycine rich protein	Back alignment and domain information

>gnl\|CDD\|164795 PHA00370, III, attachment protein	Back alignment and domain information

>gnl\|CDD\|216868 pfam02084, Bindin, Bindin	Back alignment and domain information

>gnl\|CDD\|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|215598 PLN03138, PLN03138, Protein TOC75; Provisional	Back alignment and domain information

>gnl\|CDD\|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|220755 pfam10439, Bacteriocin_IIc, Bacteriocin class II with double-glycine leader peptide	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	Back alignment and domain information

>gnl\|CDD\|219320 pfam07172, GRP, Glycine rich protein family	Back alignment and domain information

>gnl\|CDD\|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like membrane domain	Back alignment and domain information

>gnl\|CDD\|180777 PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	Back alignment and domain information

>gnl\|CDD\|204270 pfam09579, Spore_YtfJ, Sporulation protein YtfJ (Spore_YtfJ)	Back alignment and domain information

>gnl\|CDD\|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763)	Back alignment and domain information

>gnl\|CDD\|220915 pfam10961, DUF2763, Protein of unknown function (DUF2763)	Back alignment and domain information

>gnl\|CDD\|240291 PTZ00146, PTZ00146, fibrillarin; Provisional	Back alignment and domain information

>gnl\|CDD\|222132 pfam13441, Gly-zipper_YMGG, YMGG-like Gly-zipper	Back alignment and domain information

>gnl\|CDD\|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain	Back alignment and domain information

>gnl\|CDD\|236092 PRK07772, PRK07772, single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>gnl\|CDD\|203250 pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain	Back alignment and domain information

>gnl\|CDD\|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional	Back alignment and domain information

>gnl\|CDD\|226808 COG4371, COG4371, Predicted membrane protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|219420 pfam07466, DUF1517, Protein of unknown function (DUF1517)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1402
COG5602		1163	SIN3 Histone deacetylase complex, SIN3 component [	100.0
smart00761		102	HDAC_interact Histone deacetylase (HDAC) interacti	100.0
PF08295		101	Sin3_corepress: Sin3 family co-repressor; InterPro	100.0
KOG4204		231	consensus Histone deacetylase complex, SIN3 compon	100.0
KOG4204		231	consensus Histone deacetylase complex, SIN3 compon	99.81
COG5602		1163	SIN3 Histone deacetylase complex, SIN3 component [	99.77
PF02671		47	PAH: Paired amphipathic helix repeat; InterPro: IP	99.32
PF02671		47	PAH: Paired amphipathic helix repeat; InterPro: IP	99.23
PTZ00146		293	fibrillarin; Provisional	95.15
KOG3915		641	consensus Transcription regulator dachshund, conta	93.68
KOG3973		465	consensus Uncharacterized conserved glycine-rich p	93.44
PLN03138		796	Protein TOC75; Provisional	92.36
KOG3973		465	consensus Uncharacterized conserved glycine-rich p	91.81
PLN03138		796	Protein TOC75; Provisional	91.08
PHA00370		297	III attachment protein	90.22
KOG3915		641	consensus Transcription regulator dachshund, conta	89.03
PHA00370		297	III attachment protein	87.69
PF02084		238	Bindin: Bindin; InterPro: IPR000775 Bindin, the ma	83.74
COG4371		334	Predicted membrane protein [Function unknown]	82.07
PRK06958		182	single-stranded DNA-binding protein; Provisional	80.79

>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

Probab=100.00  E-value=1.3e-147  Score=1305.92  Aligned_cols=926  Identities=29%  Similarity=0.433  Sum_probs=675.9

Q ss_pred             CCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHhccChhhhhhhhccCCccccc
Q 000591           68 AGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEI  147 (1402)
Q Consensus        68 ~g~~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkgHpdLI~GFN~FLP~gy~I  147 (1402)
                      +.....++|+|+||++||++||.+|..+|++|+.||+||+|||+|.|||+|||+||+.||+|+|+||+|||+|||+||+|
T Consensus       118 p~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYki  197 (1163)
T COG5602         118 PPRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKI  197 (1163)
T ss_pred             CCCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEE
Confidence            45667789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCC--------------------------------------------CC-------------CCCcccHHHHHHHHH
Q 000591          148 TLDEDE--------------------------------------------AP-------------PKKTVEFEEAITFVN  170 (1402)
Q Consensus       148 ~l~~de--------------------------------------------~P-------------p~~~vef~~Ai~FVn  170 (1402)
                      +++.+.                                            ||             ++..+.|++||.|||
T Consensus       198 e~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vn  277 (1163)
T COG5602         198 EGSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVN  277 (1163)
T ss_pred             EEecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHH
Confidence            875210                                            00             023467999999999


Q ss_pred             HHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCc--CCCCccccCCcccCC
Q 000591          171 KIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSL--SHNIPFVRNSTQRGN  248 (1402)
Q Consensus       171 KVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~~hpDLL~eF~~FLP~~~~~~~--~~~~~~~~~~~~~~~  248 (1402)
                      +||.||+++|+.|..||++|+.||..+++|++||++|+.||+++|||+++|..|||+......  +.+++.+        
T Consensus       278 kVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~aq~p--------  349 (1163)
T COG5602         278 KVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANAQKP--------  349 (1163)
T ss_pred             HHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccccccccccccCCC--------
Confidence            999999999999999999999999999999999999999999999999999999999865432  1111110        


Q ss_pred             CCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccCcc
Q 000591          249 ERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRD  328 (1402)
Q Consensus       249 ~r~~~~P~~~q~~~~K~~~~~r~~~s~~~~~~sv~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~~~~~~~~~~~~~  328 (1402)
                        +..+|+...+...+.- +.++.+++..     ..|..     .           .+..+-| .          +-..+
T Consensus       350 --~~~lPPiG~Fs~p~~a-~~~~~ps~~~-----~~p~~-----~-----------~~~~~~r-~----------d~~~S  394 (1163)
T COG5602         350 --SKRLPPIGSFSLPTAA-PEQNRPSLLW-----ESPRS-----I-----------SNISRYR-A----------DLLTS  394 (1163)
T ss_pred             --cccCCCCCCCCCCCcc-cccCChHHhh-----cCcch-----h-----------ccccccc-c----------chhhh
Confidence              1223333222111100 0000000000     00000     0           0000000 0          00000


Q ss_pred             cccccCCCCccccccccCCCCCCCCCcccchhhhhhhhhhhhhHHHHHHhhcC-hHHHHHHHHHHHhhhcCCCCHHHHHH
Q 000591          329 FNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQN  407 (1402)
Q Consensus       329 ~~~~~~~~k~~~~~~~~~~~~~P~~s~~d~~~a~k~~~~eEl~FFdKVKk~L~-~~~Y~eFLKcLnLYsQeIIsr~ELv~  407 (1402)
                      +..+-.|.+.         . .|...          ..++.-.||++||.+|. ...|++||||||||+|+||++++||+
T Consensus       395 ~s~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lve  454 (1163)
T COG5602         395 FSRNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVE  454 (1163)
T ss_pred             hhhhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            1111011100         0 11110          01122279999999999 99999999999999999999999999


Q ss_pred             HHHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCcccccccccchhhhhhhhhHhHhhhhhhhhhhhccc
Q 000591          408 LVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSI  487 (1402)
Q Consensus       408 lV~~fLG~~pDLm~~Fk~FLg~~e~~d~~~~g~~s~~~l~~~g~~~~~~~~e~~~r~~~~~~d~~~eR~~~~~k~~~kp~  487 (1402)
                      ++-.|||.+.+||.|||+|++|.+...                   .|+                             +.
T Consensus       455 r~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~~-----------------------------~~  486 (1163)
T COG5602         455 RLFAFLGSNEELIRWFKAFINYSEPEK-------------------EPL-----------------------------RE  486 (1163)
T ss_pred             HHHHHhcCcHHHHHHHHHHhccCCCCC-------------------CCc-----------------------------cc
Confidence            999999999999999999999975210                   000                             00


Q ss_pred             cccccCCCcccCcccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHHhhccccchhHHHH
Q 000591          488 QELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDML  566 (1402)
Q Consensus       488 ~elDls~c~r~gpSYR~LPk~~~~~~cSgR~eLc~~VLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfElDm~  566 (1402)
                      ...||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+
T Consensus       487 ~~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~  566 (1163)
T COG5602         487 TRKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRH  566 (1163)
T ss_pred             cccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHH
Confidence            246889999999999999999999999999999999999999999 6999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccccCCCccccccc----hhHHHHHHHHhhC-CCHHHHHHHHHhCcCcchhHHHHHHHH
Q 000591          567 LESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQ  641 (1402)
Q Consensus       567 IE~~~~tI~~Le~l~~ki~~~~~~~~~~~~l~~~L----~~i~~R~I~rIYG-d~g~evie~L~knP~~AlPVVL~RLKQ  641 (1402)
                      ||++.+||+.|+.++++|..|...++..+.|.++|    .+||+++|++||| +||.+||++|+++|++|+||||+|||+
T Consensus       567 Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~  646 (1163)
T COG5602         567 IEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM  646 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            99999999999999999999998888888888766    5899999999999 799999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHhhhhhccccccchhhhhhcccchhHHHHHHHHHHHhhhccchhHHHHhhCCCCCCCCC
Q 000591          642 KQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPH  721 (1402)
Q Consensus       642 K~eEWr~aq~e~nKvWrev~~KNy~KSLDHq~~~FKq~DkK~lssK~Lv~EIe~i~eeq~~edd~l~~~~~g~~~~~~P~  721 (1402)
                      |++|||+|||+|||+||+|.+|||+|||||||++||+.|||.|++|.||.||+.++.++-.-  . +      +....-+
T Consensus       647 Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~--~-~------~~k~~fq  717 (1163)
T COG5602         647 KDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV--S-I------DDKKVFQ  717 (1163)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee--e-c------Cccccce
Confidence            99999999999999999999999999999999999999999999999999999766543211  0 0      1112348


Q ss_pred             ceeecCChhHHHHHHHHHHHhhhccc-CCHHHHHHHHHHHHHhhhccCCCCCCCCCCcchhhhcccccCCCCCCCCcccc
Q 000591          722 LEYGYSDSNIHEDLYKLVQYSCEEMC-STKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVE  800 (1402)
Q Consensus       722 l~f~y~D~~I~~D~~~Li~~~~~~~~-~s~e~~~ki~~~~~~Fl~~fF~i~~r~~~~~~~ed~~~~~~~~~~~~~~~~~~  800 (1402)
                      +.|.|+|.-|+.|++.|..-..-.++ -+..+++++..+++.||..||++-.--     .+..+-....     .  |..
T Consensus       718 f~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~~-----n--v~~  785 (1163)
T COG5602         718 FVFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERLL-----N--VKG  785 (1163)
T ss_pred             eeeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhhc-----c--ccc
Confidence            89999999999999998764433332 245789999999999999999854210     1111100000     0  000


Q ss_pred             cCCCCCCCCCccCCCCCCCCCCCCCCcccccccccccccCCCccccccccccccccccccchhhhhhhhhhccccccccc
Q 000591          801 SDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKR  880 (1402)
Q Consensus       801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  880 (1402)
                      .                   |.+..                 .        .+|..++..   .+|.             
T Consensus       786 ~-------------------ni~g~-----------------k--------~~r~srs~~---~~q~-------------  805 (1163)
T COG5602         786 L-------------------NIDGL-----------------K--------ADRSSRSDE---SAQR-------------  805 (1163)
T ss_pred             c-------------------ccCCc-----------------c--------cccccccch---hhhh-------------
Confidence            0                   00000                 0        000000000   0000             


Q ss_pred             cchhhhhhccccccCCCCCCccccccCCCCCCcccccCCCCCCCccccccccccCCCCCCCCcccccCCCCCcccccccc
Q 000591          881 SGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGA  960 (1402)
Q Consensus       881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  960 (1402)
                             .   ..++                                       +  .+++.  +               
T Consensus       806 -------~---s~vk---------------------------------------s--gn~~q--v---------------  817 (1163)
T COG5602         806 -------Y---SKVK---------------------------------------S--GNLEQ--V---------------  817 (1163)
T ss_pred             -------H---HHhh---------------------------------------c--ccchh--c---------------
Confidence                   0   0000                                       0  00000  0               


Q ss_pred             cccCcccccccccCCCCCcccccccccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCCCCCC
Q 000591          961 LRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDA 1040 (1402)
Q Consensus       961 ~~~~~~~~~~~~~~~~~~k~e~eegelsp~~d~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 1040 (1402)
                           +            +-  +++++     +|                                              
T Consensus       818 -----s------------~q--~de~a-----ie----------------------------------------------  827 (1163)
T COG5602         818 -----S------------KQ--IDEYA-----IE----------------------------------------------  827 (1163)
T ss_pred             -----c------------cC--CchhH-----HH----------------------------------------------
Confidence                 0            00  00000     00                                              


Q ss_pred             CCCccccCCccccCCCCCCCCCCCCccchhhhhhhhcccccccCCcccccCcccCCccccccCCCCCCCCcchhhhcccC
Q 000591         1041 DADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVK 1120 (1402)
Q Consensus      1041 ~~d~e~s~~~s~~g~~~s~ses~~~~~~~~~~~~e~~~~~~~~d~k~es~gea~g~~~~~~~~~~~~~~~~s~~~~~~~k 1120 (1402)
                         ||       ..   +.+.     |                          .|..+.+.-.|.+..            
T Consensus       828 ---de-------~k---~p~h-----p--------------------------d~l~eh~~skgi~en------------  851 (1163)
T COG5602         828 ---DE-------IK---EPTH-----P--------------------------DGLKEHNISKGISEN------------  851 (1163)
T ss_pred             ---HH-------hc---CCCC-----C--------------------------chHHHhhhhhccchh------------
Confidence               00       00   0000     0                          000000000010000            


Q ss_pred             cccccCCCcccccccccceeeecChhHhHHHHHHHHHHHHHHHHHhCchhhhhccccccCCChhHHHHHHHHHHhhccCC
Q 000591         1121 PLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGS 1200 (1402)
Q Consensus      1121 pla~~~~~~~~~~~~~~~lFygN~~~Yvf~RLhqiLyERL~~aK~~~~~~~~k~k~~~d~~~~d~Y~~fL~~l~~LldG~ 1200 (1402)
                        .++        ...+ .||||.+.||||||.-.+||||..+|..-.+..+      ......-|...+.++++|+.|.
T Consensus       852 --ek~--------~i~~-~~fgns~myvffrl~~~~yerLyeik~~~e~vti------~~~~~g~Yen~l~~s~rli~g~  914 (1163)
T COG5602         852 --EKQ--------VIAL-TEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTI------GMMEPGHYENELWDSYRLIFGA  914 (1163)
T ss_pred             --hHH--------HHHH-hhcccceeeeehhhhHhHHHHHHHHHHHHHHhhh------hhcccchhhhHHHHHHHHHhcc
Confidence              011        1123 3999999999999999999999999854433321      1223458999999999999999


Q ss_pred             CCchhhHHHHHhhhCCCceeEeeHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcCCCC-cchHHHHHHHHHhc-CCC
Q 000591         1201 IDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGK-QIDSVYYENARVLL-HEE 1278 (1402)
Q Consensus      1201 ~d~~~fED~~R~mfg~~aY~lFTiDKLI~~ivKQlq~ivsDe~~~~ll~Ly~~E~~R~~~~-~~d~~Y~~~A~~ll-~dE 1278 (1402)
                      +++.+||+.+|..+++++|++||||||.+.|+||+|++++|-+.-.++.||.....-.+.+ ..+++||..+|.|| +||
T Consensus       915 l~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e  994 (1163)
T COG5602         915 LTPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDE  994 (1163)
T ss_pred             ccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchh
Confidence            9999999999999999999999999999999999999999999999999995443322222 46788999999999 899


Q ss_pred             CeEEEEecCCCCeeEEEEecCCCCCcccccccCChHHHHhhhhhhcccccCCCCC----CccccccccccccCchhHHH-
Q 000591         1279 NIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEP----HAVVLRRNKRRFEGLDELSA- 1353 (1402)
Q Consensus      1279 n~yrie~~~~~~~ltIqL~d~~~e~~e~~~~s~~~~~~~Yv~~~fl~~~~~~~~~----~~VFL~Rn~rk~~~~~~~~~- 1353 (1402)
                      +||||.|.+.-.++.||.|-..+=-.+.+.. ....|.+||+ .|--.+++++..    +.+||.||+.+-+....... 
T Consensus       995 ~~Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~-~~~~wkyYV~-sYai~h~TEgi~~~~~k~PFL~R~ie~~~~v~~l~s~ 1072 (1163)
T COG5602         995 ILFRFCWINKFKSFGIQIMKRADLTVDQSLD-TQRVWKYYVQ-SYAIQHLTEGISYKNYKCPFLCRNIEKERTVEQLVSR 1072 (1163)
T ss_pred             heeeeeecchhheeeeeEeeccccccccccC-hHHHHHHHHH-hhccccccccCchhhccchHHHHHHHhhhhHHHHHhh
Confidence            9999999988899999999553211222222 2348999999 999988888643    68899999987652221100 


Q ss_pred             -HHhhccCceeecCceEEEeeCcceeehhhhhhhhhhhccccchhhhh
Q 000591         1354 -ACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQ 1400 (1402)
Q Consensus      1354 -~~~~~~~v~v~ngLEcki~~~s~Kv~y~~~~~~~~~~~~~~~~~~~~ 1400 (1402)
                       .....-.-+...||...+|..|+|+.|  |.-.+--|..+.-||+.+
T Consensus      1073 ~q~~l~~~h~~~s~lq~f~~~dt~k~~~--~pnte~~yi~~s~l~~~~ 1118 (1163)
T COG5602        1073 LQTKLLRSHELVSGLQAFLCLDTFKLLY--LPNTEDSYIDASYLRLRD 1118 (1163)
T ss_pred             hhHHHHHHHHHhccceeeeeeccceeee--ccCCccchhhhhhhhhhh
Confidence             001111124458999999999999999  999999999999999865

>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting	Back alignment and domain information

>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators	Back alignment and domain information

>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]	Back alignment and domain information

>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat	Back alignment and domain information

>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat	Back alignment and domain information

>PTZ00146 fibrillarin; Provisional	Back alignment and domain information

>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]	Back alignment and domain information

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]	Back alignment and domain information

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]	Back alignment and domain information

>PLN03138 Protein TOC75; Provisional	Back alignment and domain information

>PHA00370 III attachment protein	Back alignment and domain information

>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]	Back alignment and domain information

>PHA00370 III attachment protein	Back alignment and domain information

>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]	Back alignment and domain information

>COG4371 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK06958 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

Homologous Structure Templates