Citrus Sinensis ID: 000599

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------1300------1310------1320------1330------1340------1350------1360------1370------1380------1390------1400
MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
cHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccHHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccHHHHccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccc
cHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccEEccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHcHccccHcHcccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccc
MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLlkdnnfkvSQGALQSLASAAVlsgehfklHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAgsyawthrSWRVREEFARTVTSAIGLFSATELTlqrailppilqmlndpnpgvREAAILCIEEMytyagpqfrdelhrhnlpnsmVKDINARLEriqpqirssdglpntFAALEIKtasfnpkksspkaksstretslfggediteKLIEPIKVYSEKELIREFEKIgstlvpdkdwSVRIAAMQRVEGLvlggaadhpcFRGLLKQlvgplstqlsdrrSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNckavrvlpriadcakNDRNAVLRARCCEYALLVLehwpdapeiqrsADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINeedggmhrrhaspsvrergahlsftsqtstasnlsgygtSAIVAMdrssnlssgaslssGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGleisdkqnpstlrsssldlgvdppssrdppfpavvpasnddtnaFMVESTTsglnkgsnrnggmVLSDIITQIqaskdsgklsyhsnteslsslssystrrgseklqeRVSVEENDMREARrfvnphidrqyldasykdgnfrdshnsyipnfqrpllrkhgtgrmsasrrksfddsqlqlgemsnytdgpaslsdalseglspssdwcARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLAdiipscrkpfESYMERILPHVfsrlidpkelvrqpcsttldivsktysvdSLLPALLRSldeqrspkAKLAVIEFAISSLNKhamnsegsgnLGILKLWLAkltplvhdkntkLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQrlkssydpsdvvgtsseeGYAVASKKshyfgryssgsidsdggrkwssmqesnlmtgsmghamsdetKENLYQNfetganadvssktkdltgsntylegfstpridinglrdhlevsegaghnneippeldlnhhkpsaiktnsltdagpsipQILHLmcngndgsptskhGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVlsqydpfrclsVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRisqartgttidasq
meealelarakdtkermagVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTlmevssptiiveragsyawthrsWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIqpqirssdglpNTFAALEIKtasfnpkksspkaksstretslfggeditekliepikvyseKELIREFEkigstlvpdkdwSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIAdcakndrnavLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSrrlfssfdpAIQRIineedggmhrRHASPSVRERGAHLsftsqtstasnlsgYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRgleisdkqnpstLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTtsglnkgsnrnGGMVLSDIITQIQAskdsgklsyhsnteslsslssystrrgseklqervsveendmrearrfvnphidrqyLDASYKDGNFRDSHnsyipnfqrpllrkhgtgrmsasrrksfddsqlqLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTtldivsktysVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAlkqytprieVDLMNYLQSkkerqrlkssydpsdvvgtsseEGYAVAskkshyfgryssgsidsdggrkWSSMQESNLMTGSMGHAMSDETKENLYQNFETganadvssktkdltgsntylegfstpridiNGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVvlsqydpfrCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYAnrisqartgttidasq
MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKvsqgalqslasaavlsgEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNpkksspkakssTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRssnlssgaslssglllsqakslNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLsyhsnteslsslssystrrgseKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
***********************************SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRH*************************************************************GEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMS****RLFSSFDPAIQ*************************************************************************************************************************************************************************I*********************************************************HIDRQYLDASY*********************************************************************DWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL*******AKLAVIEFAISSLNKHAM***GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL******************************************************************************************************YLEGFSTPRIDINGL*******************************************QILHLMCN***********ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS************
MEEALELARAKDTKERMAGVERLHQLLEA****LTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQF***************DINARLERIQPQIR*****************************SSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD*PE*QRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRI*********************************************************************************************************************************************************************************************************************************************DGNFRDSHNS************************************SNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHA*************LWLAKLTP************AITCIISVYTHYDSTAVLNF*************R***Q*******************************************************************************************************************************************************LNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF****ADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT*******************
****************MAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASF*****************LFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEEDG****************************NLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQ*********************KVSAIESMLRGLEISDK*********************DPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQA**************************************ENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKH****************QLQLGEMSNYTDGPASLS**********SDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKK*************************ASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQP*****************************************GGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEEDG********************************YGTSA****DR**************************************************************************SSRDPPFPAV*****************************MVLSDIITQIQ**************************************************************YKDGNFRDSHNSYIPNFQRPLLRKHG*********************MSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTP*IE***********************************************************************************************************************************************LDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS************
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MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1400 2.2.26 [Sep-21-2011]
Q8RWY61439 CLIP-associated protein O yes no 0.992 0.965 0.754 0.0
A1A5G01452 CLIP-associating protein yes no 0.325 0.314 0.282 1e-42
A1A5K21456 CLIP-associating protein N/A no 0.327 0.315 0.279 1e-42
Q4U0G11460 CLIP-associating protein N/A no 0.327 0.313 0.279 4e-42
Q7Z4601538 CLIP-associating protein no no 0.332 0.302 0.25 5e-38
Q9NBD71491 CLIP-associating protein yes no 0.335 0.315 0.218 3e-35
Q80TV81535 CLIP-associating protein no no 0.137 0.125 0.33 1e-28
Q8BRT11286 CLIP-associating protein no no 0.144 0.157 0.312 7e-28
O751221294 CLIP-associating protein no no 0.144 0.156 0.312 7e-28
Q99JD41286 CLIP-associating protein no no 0.144 0.157 0.312 8e-28
>sp|Q8RWY6|CLASP_ARATH CLIP-associated protein OS=Arabidopsis thaliana GN=CLASP PE=1 SV=1 Back     alignment and function desciption
 Score = 2119 bits (5490), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1090/1445 (75%), Positives = 1221/1445 (84%), Gaps = 55/1445 (3%)

Query: 1    MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQG 60
            MEEALE+ARAKDTKERMA VERLHQLLEASRKSL+ AEVTSLVD CLDLLKD+NF+VSQG
Sbjct: 1    MEEALEMARAKDTKERMAAVERLHQLLEASRKSLSPAEVTSLVDSCLDLLKDSNFRVSQG 60

Query: 61   ALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVE 120
            ALQ+LASAAVL+GEH KLH NALVPAVVERLGD+KQPVRDAARRLL TLMEVSSPTIIVE
Sbjct: 61   ALQALASAAVLAGEHLKLHLNALVPAVVERLGDSKQPVRDAARRLLTTLMEVSSPTIIVE 120

Query: 121  RAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAI 180
            RAGSYAW H+SWRVREEFARTVTSAIGLF++TEL LQR IL PILQMLNDPN  VREAAI
Sbjct: 121  RAGSYAWMHKSWRVREEFARTVTSAIGLFASTELPLQRVILAPILQMLNDPNQAVREAAI 180

Query: 181  LCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTA 240
            LCIEEMY   G QFR+EL RH+LP+ MVKDINARLERI+PQ+RS+DG        E+K +
Sbjct: 181  LCIEEMYMQGGSQFREELQRHHLPSYMVKDINARLERIEPQLRSTDGRSAHHVVNEVKAS 240

Query: 241  SFNPKKSSPKAKSSTRETSLFGGE-DITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDW 299
            S NPKKSSP+AK+ TRE SLFGG+ DITEK IEPIKVYSEKELIREFEKI +TLVP+KDW
Sbjct: 241  SVNPKKSSPRAKAPTRENSLFGGDADITEKPIEPIKVYSEKELIREFEKIAATLVPEKDW 300

Query: 300  SVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKE 359
            S+RI+AM+RVEGLV GGA D+ CFRGLLKQLVGPLSTQL+DRRS+IVKQACHLLC LSKE
Sbjct: 301  SMRISAMRRVEGLVAGGATDYSCFRGLLKQLVGPLSTQLADRRSTIVKQACHLLCLLSKE 360

Query: 360  LLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRN 419
            LLGDFEACAE FIPVLFKLVVITVLVIAES+DNCIKTMLRNCKA RVLPRIA+ AK+DRN
Sbjct: 361  LLGDFEACAETFIPVLFKLVVITVLVIAESADNCIKTMLRNCKAARVLPRIAESAKHDRN 420

Query: 420  AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE--------------- 464
            A+LRARCCEYALL LEHWPDAPEIQRS DLYEDLIRCCVADAMSE               
Sbjct: 421  AILRARCCEYALLTLEHWPDAPEIQRSVDLYEDLIRCCVADAMSEVRATARMCYRMFAKT 480

Query: 465  ---RSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGT 521
               RSRRLFSSFDP IQR+INEEDGG+HRRHASPSVRER +  SF SQTS  SNL GYGT
Sbjct: 481  WPDRSRRLFSSFDPVIQRLINEEDGGIHRRHASPSVRERHSQPSF-SQTSAPSNLPGYGT 539

Query: 522  SAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLE 581
            SAIVAMDRSSNLSSG SLSSGLLLSQ+K +NK +ERSLESVL +SKQKVSAIESMLRGL 
Sbjct: 540  SAIVAMDRSSNLSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESMLRGLH 599

Query: 582  ISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNG 641
            ISD+QNP+ LRSSSLDLGVDPPSSRDPPF AV PASN  T++   EST S +NKGSNRNG
Sbjct: 600  ISDRQNPAALRSSSLDLGVDPPSSRDPPFHAVAPASNSHTSSAAAESTHS-INKGSNRNG 658

Query: 642  GMVLSDIITQIQASKDSGKLSYHSN--TESLSSLSSYSTRRGSEKLQERVSVEE-NDMRE 698
            G+ LSDIITQIQASKDSG+ SY  N  +ES  + SS + +RGSE+  ER S+EE ND RE
Sbjct: 659  GLGLSDIITQIQASKDSGRSSYRGNLLSESHPTFSSLTAKRGSER-NERSSLEESNDARE 717

Query: 699  ARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQL 758
             RRF+  H DRQ +D +Y+D  FR+S+ S++PNFQRPLLRK+  GRMSA RR+SFDDSQL
Sbjct: 718  VRRFMAGHFDRQQMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDSQL 777

Query: 759  QLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKV 818
            Q+G++SN+ DGPASL++AL++GL+ SSDWCARV+AFN+L++LLQQGPKG QEVIQ+FEKV
Sbjct: 778  QIGDISNFVDGPASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFEKV 837

Query: 819  MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPC 878
            MKLF +HLDDPHHKVAQAALSTLAD+IPSCRKPFESYMER+LPHVFSRLIDPKE+VRQPC
Sbjct: 838  MKLFLRHLDDPHHKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQPC 897

Query: 879  STTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 938
            S+TL+IVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAI+S N++A N E SGN GIL
Sbjct: 898  SSTLEIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSGIL 957

Query: 939  KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 998
            KLWLAKLTPL  DKNTKLKEA+ITCIISVY HYDS  +LN+ILSLSVEEQNSLRRALKQY
Sbjct: 958  KLWLAKLTPLTRDKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALKQY 1017

Query: 999  TPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSD 1058
            TPRIEVDL+NY+QSKKE+QR+K SYDPSD +GTSSEEGYA ASKK+ + GRYS GSIDSD
Sbjct: 1018 TPRIEVDLLNYMQSKKEKQRIK-SYDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSIDSD 1076

Query: 1059 GGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETG---ANADVSSKTKDLT----GSN 1111
             GRKWSS QE  ++TG +G  +S  T+E LYQN  TG   A+  ++ K  D T    G N
Sbjct: 1077 SGRKWSSSQEPTMITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAGQN 1136

Query: 1112 T--------------YLEGFSTPRIDINGLR----DHLEVSEGAGHNNEIPPELDLNHHK 1153
            +               L+  S P ++ NGL     D LE      H NE+  ELDL H+ 
Sbjct: 1137 SISRTSPNGSSENIEILDDLSPPHLEKNGLNLTSVDSLE----GRHENEVSRELDLGHYM 1192

Query: 1154 PSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQI 1213
             ++IK N+  ++GPSIPQILH++   +    +SK   LQQLI+ASVAN+ S+WTKYFNQI
Sbjct: 1193 LTSIKVNTTPESGPSIPQILHMINGSDGSPSSSKKSGLQQLIEASVANEESVWTKYFNQI 1252

Query: 1214 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEA 1273
            LT VLEVLDD D S++E+ALSLI+EMLK+QKD MEDSVEIVIEKLLHV+KD VPKVS EA
Sbjct: 1253 LTVVLEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKLLHVSKDTVPKVSTEA 1312

Query: 1274 EHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1333
            E CLT VLSQYDPFRCLSVIVPLLVTEDEKTLV CINCLTKLVGRLSQEELM QL SFLP
Sbjct: 1313 EQCLTTVLSQYDPFRCLSVIVPLLVTEDEKTLVACINCLTKLVGRLSQEELMDQLSSFLP 1372

Query: 1334 ALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTG 1393
            A+FEAFG+QSADVRKTVVFCLVDIYIMLGKAFLPYLE LNSTQ+RLVTIYANRISQAR G
Sbjct: 1373 AVFEAFGSQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNSTQVRLVTIYANRISQARNG 1432

Query: 1394 TTIDA 1398
              IDA
Sbjct: 1433 APIDA 1437
Cortical microtubule plus-end tracking protein required for cell morphogenesis and cell division. Promotes the stabilization of dynamic microtubules during mitosis. Regulates microtubule-cortex attachment, thereby contributing to self-organization of cortical microtubules and subsequent cell shape.
Arabidopsis thaliana (taxid: 3702)
>sp|A1A5G0|CLAP1_XENTR CLIP-associating protein 1 OS=Xenopus tropicalis GN=clasp1 PE=1 SV=1 Back     alignment and function description
>sp|A1A5K2|CLA1B_XENLA CLIP-associating protein 1-B OS=Xenopus laevis GN=clasp1b PE=1 SV=1 Back     alignment and function description
>sp|Q4U0G1|CLA1A_XENLA CLIP-associating protein 1-A OS=Xenopus laevis GN=clasp1-a PE=2 SV=2 Back     alignment and function description
>sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9NBD7|CLASP_DROME CLIP-associating protein OS=Drosophila melanogaster GN=chb PE=1 SV=1 Back     alignment and function description
>sp|Q80TV8|CLAP1_MOUSE CLIP-associating protein 1 OS=Mus musculus GN=Clasp1 PE=1 SV=2 Back     alignment and function description
>sp|Q8BRT1|CLAP2_MOUSE CLIP-associating protein 2 OS=Mus musculus GN=Clasp2 PE=1 SV=1 Back     alignment and function description
>sp|O75122|CLAP2_HUMAN CLIP-associating protein 2 OS=Homo sapiens GN=CLASP2 PE=1 SV=2 Back     alignment and function description
>sp|Q99JD4|CLAP2_RAT CLIP-associating protein 2 OS=Rattus norvegicus GN=Clasp2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1400
2240699691426 predicted protein [Populus trichocarpa] 0.997 0.978 0.830 0.0
2254378851440 PREDICTED: CLIP-associating protein-like 0.995 0.967 0.804 0.0
3565050941440 PREDICTED: uncharacterized protein LOC10 0.996 0.968 0.795 0.0
3565723171444 PREDICTED: uncharacterized protein LOC10 0.997 0.967 0.794 0.0
2555602731384 conserved hypothetical protein [Ricinus 0.954 0.965 0.812 0.0
3565481191428 PREDICTED: uncharacterized protein LOC10 0.987 0.968 0.768 0.0
4494437461442 PREDICTED: CLIP-associating protein 1-li 0.997 0.968 0.759 0.0
3565372721436 PREDICTED: uncharacterized protein LOC10 0.992 0.967 0.766 0.0
425702861439 CLIP-associated protein [Arabidopsis tha 0.992 0.965 0.754 0.0
2978321141439 hypothetical protein ARALYDRAFT_899844 [ 0.996 0.969 0.753 0.0
>gi|224069969|ref|XP_002303094.1| predicted protein [Populus trichocarpa] gi|222844820|gb|EEE82367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 2349 bits (6087), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1187/1429 (83%), Positives = 1277/1429 (89%), Gaps = 33/1429 (2%)

Query: 1    MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQG 60
            MEEALELARAKDTKERMAGVERLHQLLEA RKSL+S+E TSLVDCCLDLLKDNNFKVSQG
Sbjct: 1    MEEALELARAKDTKERMAGVERLHQLLEACRKSLSSSETTSLVDCCLDLLKDNNFKVSQG 60

Query: 61   ALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVE 120
            ALQ+LASAAVLSG++FKLHFNALVPAVVERLGD KQPVRDAARRLLLTLMEVSSPTIIVE
Sbjct: 61   ALQALASAAVLSGDYFKLHFNALVPAVVERLGDGKQPVRDAARRLLLTLMEVSSPTIIVE 120

Query: 121  RAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAI 180
            RAGS+AWTHRSWRVREEFARTVTSAI LF++TEL LQRAILPPILQMLNDPNPGVREAAI
Sbjct: 121  RAGSFAWTHRSWRVREEFARTVTSAINLFASTELPLQRAILPPILQMLNDPNPGVREAAI 180

Query: 181  LCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTA 240
            LCIEEMY+ AGPQFRDELHRH+LPNSM+KDINARLERI+PQ+R SDGL   FA +E+K  
Sbjct: 181  LCIEEMYSQAGPQFRDELHRHHLPNSMMKDINARLERIEPQVRPSDGLGGNFAPVEMKPT 240

Query: 241  SFNPKKSSPKAKSSTRETSLFGGE-DITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDW 299
            S + KKSSPKAKSSTRE SLFG E D+TEK IEPIKVYSEKELIREFEKI +TLVP+KDW
Sbjct: 241  SLHSKKSSPKAKSSTREISLFGAESDVTEKPIEPIKVYSEKELIREFEKIAATLVPEKDW 300

Query: 300  SVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKE 359
            ++RIAAMQRVEGLVLGGA D+PCFRGLLKQ VGPL+TQLSDRRSS+VKQACHLLCFLSK+
Sbjct: 301  TIRIAAMQRVEGLVLGGATDYPCFRGLLKQFVGPLNTQLSDRRSSVVKQACHLLCFLSKD 360

Query: 360  LLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRN 419
            LLGDFEACAEMFIP LFKLVVITVLVIAES+DNCIKTMLRNCK  RVLPRIADCAKNDR 
Sbjct: 361  LLGDFEACAEMFIPALFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKNDRA 420

Query: 420  AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE--------------- 464
            AVLRARCCEYALL+LEHWPDAPEIQRSADLYEDLIRCCVADAMSE               
Sbjct: 421  AVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAMSEVRSTARMCYRMFAKT 480

Query: 465  ---RSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGT 521
               RSRRLF SFDP IQRI+NEEDGG+HRRHASPS+R+R A  SFT Q S AS++ GYGT
Sbjct: 481  WPERSRRLFMSFDPVIQRIVNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGT 540

Query: 522  SAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLE 581
            SAIVAMDR+S+LSSG SLSSGLLLSQAKSL K TERSLESVL+ASKQKV+AIESMLRGLE
Sbjct: 541  SAIVAMDRTSSLSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKVTAIESMLRGLE 600

Query: 582  ISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNG 641
            +SDKQNPS LRSSSLDLGVDPPSSRDPPFPA VPASN  TN+   EST SG+ KGSNRNG
Sbjct: 601  LSDKQNPSALRSSSLDLGVDPPSSRDPPFPASVPASNHLTNSLTAESTASGIGKGSNRNG 660

Query: 642  GMVLSDIITQIQASKDSGKLSYHSN--TESLSSLSSYSTRRGSEKLQERVSVEE-NDMRE 698
            G+VLSDIITQIQASKDS KLSY +N   ESL + SSYST+R    + ER SVEE ND+RE
Sbjct: 661  GLVLSDIITQIQASKDSAKLSYRNNMAAESLPTFSSYSTKR----ISERGSVEEDNDIRE 716

Query: 699  ARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQL 758
             RRF NPH+DRQY+D  YKD N+RDSH+S+IPNFQRPLLRKH  GRMSA RRKSFDDSQL
Sbjct: 717  PRRFANPHVDRQYMDTPYKDLNYRDSHSSHIPNFQRPLLRKHVAGRMSAGRRKSFDDSQL 776

Query: 759  QLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKV 818
             LGE+S+Y +GPASLSDALSEGLSPSSDW ARV+AFNYL SLLQQGPKG+QEVIQNFEKV
Sbjct: 777  SLGEVSSYVEGPASLSDALSEGLSPSSDWNARVAAFNYLHSLLQQGPKGVQEVIQNFEKV 836

Query: 819  MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPC 878
            MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPC
Sbjct: 837  MKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPC 896

Query: 879  STTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGIL 938
            STTL+IVSKTY VD LLPALLRSLDEQRSPKAKLAVIEFA+SS NKHAMNSEGSGN GIL
Sbjct: 897  STTLEIVSKTYGVDILLPALLRSLDEQRSPKAKLAVIEFALSSFNKHAMNSEGSGNTGIL 956

Query: 939  KLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQY 998
            KLWLAKLTPLVHDKNTKLKEAAITCIISVY+H+DS AVLNFILSLSVEEQNSLRRALKQY
Sbjct: 957  KLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSIAVLNFILSLSVEEQNSLRRALKQY 1016

Query: 999  TPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSD 1058
            TPRIEVDLMN++QSKKERQR KSSYDPSDVVGTSSEEGY  ASKKSHYFGRYS GS+DSD
Sbjct: 1017 TPRIEVDLMNFVQSKKERQRSKSSYDPSDVVGTSSEEGYIGASKKSHYFGRYSGGSVDSD 1076

Query: 1059 GGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADV-SSKTKD---LTGSNTYL 1114
            GGRKWSS QES L++GS+G A  DET+ENLYQNFET +N DV SSK +D   + GS    
Sbjct: 1077 GGRKWSSTQESTLISGSIGQAAPDETQENLYQNFETSSNTDVYSSKNRDSNYVVGSTGLN 1136

Query: 1115 EGFSTPRID--INGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQI 1172
             G    R++   NGL     ++ G GH+N +  ELDLN+HKP+A+K NSL D GPSIPQI
Sbjct: 1137 LGSRPGRLENMDNGLNFEGLLTPGYGHDNNVLSELDLNNHKPAAVKINSLADTGPSIPQI 1196

Query: 1173 LHLMCNGNDGSPT-SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREV 1231
            LHL+CNGND SPT SK GALQQLI+AS+AND S+W+KYFNQILTAVLEVLDD+DSS+RE+
Sbjct: 1197 LHLICNGNDESPTSSKRGALQQLIEASMANDPSVWSKYFNQILTAVLEVLDDSDSSIREL 1256

Query: 1232 ALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLS 1291
             LSLI EMLKNQKD MEDS+EI IEKLLHVT+D VPKVSNEAEHCLTV LSQYDPFRCLS
Sbjct: 1257 TLSLIVEMLKNQKDAMEDSIEIAIEKLLHVTEDIVPKVSNEAEHCLTVALSQYDPFRCLS 1316

Query: 1292 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVV 1351
            VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELM QLPSFLPALFEAFGNQSADVRKTVV
Sbjct: 1317 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMVQLPSFLPALFEAFGNQSADVRKTVV 1376

Query: 1352 FCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRISQARTGTTIDASQ 1400
            FCLVDIYIMLGKAFLP+LE LNSTQLRLVTIYANRISQARTGT IDAS 
Sbjct: 1377 FCLVDIYIMLGKAFLPHLEGLNSTQLRLVTIYANRISQARTGTAIDASH 1425

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225437885|ref|XP_002265367.1| PREDICTED: CLIP-associating protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356505094|ref|XP_003521327.1| PREDICTED: uncharacterized protein LOC100796697 [Glycine max] Back     alignment and taxonomy information
>gi|356572317|ref|XP_003554315.1| PREDICTED: uncharacterized protein LOC100820523 [Glycine max] Back     alignment and taxonomy information
>gi|255560273|ref|XP_002521154.1| conserved hypothetical protein [Ricinus communis] gi|223539723|gb|EEF41305.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356548119|ref|XP_003542451.1| PREDICTED: uncharacterized protein LOC100801377 [Glycine max] Back     alignment and taxonomy information
>gi|449443746|ref|XP_004139638.1| PREDICTED: CLIP-associating protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356537272|ref|XP_003537153.1| PREDICTED: uncharacterized protein LOC100775793 [Glycine max] Back     alignment and taxonomy information
>gi|42570286|ref|NP_849997.2| CLIP-associated protein [Arabidopsis thaliana] gi|20259452|gb|AAM13846.1| unknown protein [Arabidopsis thaliana] gi|330251886|gb|AEC06980.1| CLIP-associated protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297832114|ref|XP_002883939.1| hypothetical protein ARALYDRAFT_899844 [Arabidopsis lyrata subsp. lyrata] gi|297329779|gb|EFH60198.1| hypothetical protein ARALYDRAFT_899844 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1400
TAIR|locus:20615991439 CLASP "CLIP-associated protein 0.605 0.589 0.564 0.0
UNIPROTKB|A1A5K21456 clasp1b "CLIP-associating prot 0.445 0.427 0.228 1.5e-74
ZFIN|ZDB-GENE-040426-23431529 clasp2 "cytoplasmic linker ass 0.449 0.411 0.218 2.1e-74
UNIPROTKB|G3N2Y51539 G3N2Y5 "Uncharacterized protei 0.165 0.150 0.306 7e-71
UNIPROTKB|Q4U0G11460 clasp1-a "CLIP-associating pro 0.452 0.434 0.219 1.5e-70
UNIPROTKB|E7EW491514 CLASP2 "CLIP-associating prote 0.442 0.409 0.241 1.7e-70
UNIPROTKB|E1BQ151540 CLASP2 "Uncharacterized protei 0.442 0.402 0.241 2.5e-68
UNIPROTKB|A1A5G01452 clasp1 "CLIP-associating prote 0.165 0.159 0.306 1.3e-65
UNIPROTKB|E1BSR31469 E1BSR3 "Uncharacterized protei 0.451 0.430 0.233 1.1e-64
UNIPROTKB|Q7Z4601538 CLASP1 "CLIP-associating prote 0.267 0.243 0.269 4.2e-63
TAIR|locus:2061599 CLASP "CLIP-associated protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2309 (817.9 bits), Expect = 0., Sum P(2) = 0.
 Identities = 497/880 (56%), Positives = 616/880 (70%)

Query:   459 ADAMSERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSG 518
             A    +RSRRLFSSFDP IQR+INEEDGG+HRRHASPSVRER +  SF SQTS  SNL G
Sbjct:   478 AKTWPDRSRRLFSSFDPVIQRLINEEDGGIHRRHASPSVRERHSQPSF-SQTSAPSNLPG 536

Query:   519 YGTSAIVAMDRXXXXXXXXXXXXXXXXXXXXXXNKATERSLESVLNASKQKVSAIESMLR 578
             YGTSAIVAMDR                      NK +ERSLESVL +SKQKVSAIESMLR
Sbjct:   537 YGTSAIVAMDRSSNLSSGGSLSSGLLLSQSKDVNKGSERSLESVLQSSKQKVSAIESMLR 596

Query:   579 GLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSN 638
             GL ISD+QNP+ LRSSSLDLGVDPPSSRDPPF AV PASN  T++   EST S +NKGSN
Sbjct:   597 GLHISDRQNPAALRSSSLDLGVDPPSSRDPPFHAVAPASNSHTSSAAAESTHS-INKGSN 655

Query:   639 RNGGMVLSDIITQIQASKDSGKLXXXXXXXXXXX-XXXXXXXXXXXKLQERVSVEE-NDM 696
             RNGG+ LSDIITQIQASKDSG+                        +  ER S+EE ND 
Sbjct:   656 RNGGLGLSDIITQIQASKDSGRSSYRGNLLSESHPTFSSLTAKRGSERNERSSLEESNDA 715

Query:   697 REARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDS 756
             RE RRF+  H DRQ +D +Y+D  FR+S+ S++PNFQRPLLRK+  GRMSA RR+SFDDS
Sbjct:   716 REVRRFMAGHFDRQQMDTAYRDLTFRESNASHVPNFQRPLLRKNVGGRMSAGRRRSFDDS 775

Query:   757 QLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFE 816
             QLQ+G++SN+ DGPASL++AL++GL+ SSDWCARV+AFN+L++LLQQGPKG QEVIQ+FE
Sbjct:   776 QLQIGDISNFVDGPASLNEALNDGLNSSSDWCARVAAFNFLQTLLQQGPKGAQEVIQSFE 835

Query:   817 KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQ 876
             KVMKLF +HLDDPHHKVAQAALSTLAD+IPSCRKPFESYMER+LPHVFSRLIDPKE+VRQ
Sbjct:   836 KVMKLFLRHLDDPHHKVAQAALSTLADLIPSCRKPFESYMERVLPHVFSRLIDPKEVVRQ 895

Query:   877 PCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 936
             PCS+TL+IVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAI+S N++A N E SGN G
Sbjct:   896 PCSSTLEIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNRYAGNPEISGNSG 955

Query:   937 ILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALK 996
             ILKLWLAKLTPL  DKNTKLKEA+ITCIISVY HYDS  +LN+ILSLSVEEQNSLRRALK
Sbjct:   956 ILKLWLAKLTPLTRDKNTKLKEASITCIISVYNHYDSAGLLNYILSLSVEEQNSLRRALK 1015

Query:   997 QYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSID 1056
             QYTPRIEVDL+NY+QSKKE+QR+KS YDPSD +GTSSEEGYA ASKK+ + GRYS GSID
Sbjct:  1016 QYTPRIEVDLLNYMQSKKEKQRIKS-YDPSDAIGTSSEEGYAGASKKNIFLGRYSGGSID 1074

Query:  1057 SDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANA--DV-SSKTKDLTGSNTY 1113
             SD GRKWSS QE  ++TG +G  +S  T+E LYQN  TG ++  D+ + K  D T ++  
Sbjct:  1075 SDSGRKWSSSQEPTMITGGVGQNVSSGTQEKLYQNVRTGISSASDLLNPKDSDYTFASAG 1134

Query:  1114 LEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELD---LNHHKPSAIKTNSLTDAGPSIP 1170
                 S  R   NG  +++E+ +        PP L+   LN     +++     +    + 
Sbjct:  1135 QNSIS--RTSPNGSSENIEILDDLS-----PPHLEKNGLNLTSVDSLEGRHENEVSREL- 1186

Query:  1171 QILHLMCNGNDGSPTSKHG-ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVR 1229
              + H M      + T + G ++ Q++     +D S  +       + + ++++ + ++  
Sbjct:  1187 DLGHYMLTSIKVNTTPESGPSIPQILHMINGSDGSPSSSK----KSGLQQLIEASVANEE 1242

Query:  1230 EVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRC 1289
              V     N++L    +V++D    + E  L +  + +    +  E  + +V+ +      
Sbjct:  1243 SVWTKYFNQILTVVLEVLDDEDFSIKELALSLISEMLKSQKDAMEDSVEIVIEKL--LHV 1300

Query:  1290 LSVIVPLLVTEDEKTLVTCIN------CLTKLVGRLSQEE 1323
                 VP + TE E+ L T ++      CL+ +V  L  E+
Sbjct:  1301 SKDTVPKVSTEAEQCLTTVLSQYDPFRCLSVIVPLLVTED 1340
GO:0005737 "cytoplasm" evidence=ISM
GO:0005886 "plasma membrane" evidence=IDA
GO:0005876 "spindle microtubule" evidence=IDA
GO:0007026 "negative regulation of microtubule depolymerization" evidence=IMP
GO:0007067 "mitosis" evidence=IMP
GO:0009524 "phragmoplast" evidence=IDA
GO:0016049 "cell growth" evidence=RCA;IMP
GO:0050821 "protein stabilization" evidence=IMP
GO:0051010 "microtubule plus-end binding" evidence=IDA
GO:0043622 "cortical microtubule organization" evidence=IDA;IMP
GO:0005829 "cytosol" evidence=RCA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005938 "cell cortex" evidence=IDA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009832 "plant-type cell wall biogenesis" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0030243 "cellulose metabolic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
UNIPROTKB|A1A5K2 clasp1b "CLIP-associating protein 1-B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2343 clasp2 "cytoplasmic linker associated protein 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3N2Y5 G3N2Y5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q4U0G1 clasp1-a "CLIP-associating protein 1-A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E7EW49 CLASP2 "CLIP-associating protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BQ15 CLASP2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A1A5G0 clasp1 "CLIP-associating protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|E1BSR3 E1BSR3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z460 CLASP1 "CLIP-associating protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8RWY6CLASP_ARATHNo assigned EC number0.75430.99280.9659yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1400
pfam12348228 pfam12348, CLASP_N, CLASP N terminal 1e-51
pfam1351355 pfam13513, HEAT_EZ, HEAT-like repeat 9e-05
pfam0298531 pfam02985, HEAT, HEAT repeat 3e-04
pfam12348228 pfam12348, CLASP_N, CLASP N terminal 0.002
>gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal Back     alignment and domain information 
 Score =  181 bits (461), Expect = 1e-51
 Identities = 51/228 (22%), Positives = 97/228 (42%), Gaps = 27/228 (11%)

Query: 282 LIREFEKIGSTLV---PDKDWSVRIAAMQRVEGLVLGGAAD--HPCFRGLLKQLVGPLST 336
           L  +FE++         +++W  R  A+ ++  ++ G A +     F   LKQL+  +  
Sbjct: 1   LDDKFEEMLPAFEGKETEQNWDAREKAIIKLRSIIKGNAPEDYPSEFLAGLKQLLEGILK 60

Query: 337 QLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKT 396
            LS  R+++    CHLL  L+ +L    +  AE+ +P L KL   T  +I+++++  +  
Sbjct: 61  ALSSLRTTLSSTGCHLLKELAIQLGHHLDPFAEILLPTLLKLCGDTKKIISQNANQAVAD 120

Query: 397 MLRNCKAV-RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD-APEIQRSA--DLYED 452
           +L N     R+  +    A  D+N   R     +  ++L         I+     DLYE 
Sbjct: 121 ILSNVSYTPRLELQHISAALQDKNVQPREYSAIWLKILLIRHGHHKSHIEHHGGLDLYEK 180

Query: 453 LIRCCVADAMS------------------ERSRRLFSSFDPAIQRIIN 482
            ++  + DA                     R++ L SS DP +++ + 
Sbjct: 181 SLKKGLEDANPGVRETARSTFWEFFRVWPARAKSLLSSLDPNVRKALE 228

This region is found at the N terminal of CLIP-associated proteins (CLASPs). CLASPs are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules. In yeast, Drosophila, and Xenopus, a single CLASP orthologue is present. In mammals, a second paralogue (CLASP2) exists which has some functional overlap with CLASP1. Length = 228
>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat Back     alignment and domain information
>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat Back     alignment and domain information
>gnl|CDD|221541 pfam12348, CLASP_N, CLASP N terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1400
KOG2956516 consensus CLIP-associating protein [General functi 100.0
KOG1820815 consensus Microtubule-associated protein [Cytoskel 99.94
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.91
PF12348228 CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi 99.82
KOG1820815 consensus Microtubule-associated protein [Cytoskel 99.81
KOG18241233 consensus TATA-binding protein-interacting protein 99.65
KOG1242 569 consensus Protein containing adaptin N-terminal re 99.62
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.56
KOG21711075 consensus Karyopherin (importin) beta 3 [Nuclear s 99.48
KOG18241233 consensus TATA-binding protein-interacting protein 99.42
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 99.17
KOG1242569 consensus Protein containing adaptin N-terminal re 99.15
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 99.13
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 99.11
KOG2933334 consensus Uncharacterized conserved protein [Funct 99.09
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.86
KOG2023885 consensus Nuclear transport receptor Karyopherin-b 98.8
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 98.75
KOG2933334 consensus Uncharacterized conserved protein [Funct 98.67
KOG0915 1702 consensus Uncharacterized conserved protein [Funct 98.53
PTZ00429746 beta-adaptin; Provisional 98.49
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.48
KOG2956516 consensus CLIP-associating protein [General functi 98.46
KOG0212675 consensus Uncharacterized conserved protein [Funct 98.42
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.3
PTZ00429746 beta-adaptin; Provisional 98.3
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.29
KOG02131172 consensus Splicing factor 3b, subunit 1 [RNA proce 98.21
KOG09151702 consensus Uncharacterized conserved protein [Funct 98.18
KOG1241859 consensus Karyopherin (importin) beta 1 [Nuclear s 98.18
PRK13800897 putative oxidoreductase/HEAT repeat-containing pro 98.17
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 98.17
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 98.14
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 98.08
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 98.06
PRK09687280 putative lyase; Provisional 98.01
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.85
PRK09687280 putative lyase; Provisional 97.84
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.79
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 97.76
COG5215858 KAP95 Karyopherin (importin) beta [Intracellular t 97.73
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.67
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 97.64
KOG1060968 consensus Vesicle coat complex AP-3, beta subunit 97.62
PF05004309 IFRD: Interferon-related developmental regulator ( 97.56
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.55
PF1275597 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region 97.52
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 97.47
COG5181975 HSH155 U2 snRNP spliceosome subunit [RNA processin 97.36
KOG0211759 consensus Protein phosphatase 2A regulatory subuni 97.34
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 97.26
PF05004309 IFRD: Interferon-related developmental regulator ( 97.23
KOG1060 968 consensus Vesicle coat complex AP-3, beta subunit 97.13
KOG1248 1176 consensus Uncharacterized conserved protein [Funct 97.12
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 97.05
KOG1062866 consensus Vesicle coat complex AP-1, gamma subunit 96.99
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 96.96
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 96.63
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 96.63
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.55
KOG0166514 consensus Karyopherin (importin) alpha [Intracellu 96.5
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.5
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 96.49
KOG12401431 consensus Protein kinase containing WD40 repeats [ 96.48
KOG45241014 consensus Uncharacterized conserved protein [Funct 96.46
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.39
PF0298531 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re 96.38
KOG12401431 consensus Protein kinase containing WD40 repeats [ 96.35
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 96.3
PF05804708 KAP: Kinesin-associated protein (KAP) 96.29
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 96.27
PF1364688 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I 96.24
KOG1243 690 consensus Protein kinase [General function predict 96.2
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 96.12
PF12717178 Cnd1: non-SMC mitotic condensation complex subunit 95.91
KOG01681051 consensus Putative ubiquitin fusion degradation pr 95.86
PF1351355 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O 95.81
KOG19671030 consensus DNA repair/transcription protein Mms19 [ 95.78
PF14500262 MMS19_N: Dos2-interacting transcription regulator 95.7
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 95.68
PLN030761780 ARF guanine nucleotide exchange factor (ARF-GEF); 95.65
PF12231 372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.6
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.53
COG5096757 Vesicle coat complex, various subunits [Intracellu 95.53
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.45
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 95.39
cd03568144 VHS_STAM VHS domain family, STAM subfamily; member 95.27
PF04118307 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do 95.23
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 95.19
KOG1059 877 consensus Vesicle coat complex AP-3, delta subunit 95.19
PF12231372 Rif1_N: Rap1-interacting factor 1 N terminal; Inte 95.13
KOG2025 892 consensus Chromosome condensation complex Condensi 95.13
PF13251182 DUF4042: Domain of unknown function (DUF4042) 95.08
KOG2259823 consensus Uncharacterized conserved protein [Funct 95.06
COG5240 898 SEC21 Vesicle coat complex COPI, gamma subunit [In 94.88
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 94.74
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 94.7
COG5064526 SRP1 Karyopherin (importin) alpha [Intracellular t 94.44
PF12460415 MMS19_C: RNAPII transcription regulator C-terminal 94.41
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 94.39
KOG1059877 consensus Vesicle coat complex AP-3, delta subunit 94.33
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 94.33
PF12719 298 Cnd3: Nuclear condensing complex subunits, C-term 94.21
KOG2274 1005 consensus Predicted importin 9 [Intracellular traf 94.14
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 94.13
KOG4653982 consensus Uncharacterized conserved protein [Funct 94.1
cd03569142 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s 94.1
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 93.96
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 93.91
KOG2032533 consensus Uncharacterized conserved protein [Funct 93.89
COG5240898 SEC21 Vesicle coat complex COPI, gamma subunit [In 93.81
cd03561133 VHS VHS domain family; The VHS domain is present i 93.65
PF10274183 ParcG: Parkin co-regulated protein; InterPro: IPR0 93.64
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.54
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 93.54
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 93.31
KOG1243690 consensus Protein kinase [General function predict 93.3
KOG2032533 consensus Uncharacterized conserved protein [Funct 93.27
PF11640155 TAN: Telomere-length maintenance and DNA damage re 93.18
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 93.15
KOG2149 393 consensus Uncharacterized conserved protein [Funct 93.13
COG1413335 FOG: HEAT repeat [Energy production and conversion 93.07
KOG0392 1549 consensus SNF2 family DNA-dependent ATPase domain- 93.05
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 93.04
TIGR02270 410 conserved hypothetical protein. Members are found 93.03
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 92.98
TIGR02270 410 conserved hypothetical protein. Members are found 92.93
cd03565141 VHS_Tom1 VHS domain family, Tom1 subfamily; The VH 92.88
KOG2259 823 consensus Uncharacterized conserved protein [Funct 92.69
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 92.58
PF08623169 TIP120: TATA-binding protein interacting (TIP20); 92.51
PF14500262 MMS19_N: Dos2-interacting transcription regulator 92.45
KOG0168 1051 consensus Putative ubiquitin fusion degradation pr 92.44
PLN03076 1780 ARF guanine nucleotide exchange factor (ARF-GEF); 92.37
KOG4653982 consensus Uncharacterized conserved protein [Funct 92.31
PF08167165 RIX1: rRNA processing/ribosome biogenesis 92.27
KOG18371621 consensus Uncharacterized conserved protein [Funct 92.13
KOG1058948 consensus Vesicle coat complex COPI, beta subunit 92.13
KOG1020 1692 consensus Sister chromatid cohesion protein SCC2/N 92.03
KOG1077938 consensus Vesicle coat complex AP-2, alpha subunit 92.0
cd00197115 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil 91.86
KOG4535 728 consensus HEAT and armadillo repeat-containing pro 91.78
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 91.78
PF12719298 Cnd3: Nuclear condensing complex subunits, C-term 91.73
KOG2137 700 consensus Protein kinase [Signal transduction mech 91.7
PF1036392 DUF2435: Protein of unknown function (DUF2435) 91.67
KOG4825666 consensus Component of synaptic membrane glycine-, 91.66
KOG0803 1312 consensus Predicted E3 ubiquitin ligase [Posttrans 91.62
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 91.46
KOG1525 1266 consensus Sister chromatid cohesion complex Cohesi 91.15
cd03561133 VHS VHS domain family; The VHS domain is present i 90.88
PF1036392 DUF2435: Protein of unknown function (DUF2435) 90.4
PF05918 556 API5: Apoptosis inhibitory protein 5 (API5); Inter 90.37
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 90.25
KOG2149393 consensus Uncharacterized conserved protein [Funct 90.16
KOG2199462 consensus Signal transducing adaptor protein STAM/ 90.11
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 89.88
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 89.64
KOG2025892 consensus Chromosome condensation complex Condensi 89.49
COG5096 757 Vesicle coat complex, various subunits [Intracellu 89.12
KOG04141251 consensus Chromosome condensation complex Condensi 88.65
PF05918556 API5: Apoptosis inhibitory protein 5 (API5); Inter 88.64
PF05536 543 Neurochondrin: Neurochondrin 88.63
COG5218 885 YCG1 Chromosome condensation complex Condensin, su 88.53
KOG2160342 consensus Armadillo/beta-catenin-like repeat-conta 87.56
KOG1991 1010 consensus Nuclear transport receptor RANBP7/RANBP8 87.53
COG1413335 FOG: HEAT repeat [Energy production and conversion 87.51
PF10521282 DUF2454: Protein of unknown function (DUF2454); In 87.33
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 87.33
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 87.28
PF1276542 Cohesin_HEAT: HEAT repeat associated with sister c 87.16
KOG08031312 consensus Predicted E3 ubiquitin ligase [Posttrans 87.01
PF04388 668 Hamartin: Hamartin protein; InterPro: IPR007483 Th 86.83
cd03572122 ENTH_epsin_related ENTH domain, Epsin Related fami 86.54
KOG2549576 consensus Transcription initiation factor TFIID, s 86.49
PF12783168 Sec7_N: Guanine nucleotide exchange factor in Golg 86.26
cd08050343 TAF6 TATA Binding Protein (TBP) Associated Factor 86.12
KOG4535728 consensus HEAT and armadillo repeat-containing pro 85.93
COG5095450 TAF6 Transcription initiation factor TFIID, subuni 85.47
KOG4224 550 consensus Armadillo repeat protein VAC8 required f 85.0
PF12830187 Nipped-B_C: Sister chromatid cohesion C-terminus 84.96
KOG1078865 consensus Vesicle coat complex COPI, gamma subunit 84.92
KOG04131529 consensus Uncharacterized conserved protein relate 84.37
PF11698119 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 84.34
smart00802107 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. 83.63
KOG0946 970 consensus ER-Golgi vesicle-tethering protein p115 83.49
PF08064107 UME: UME (NUC010) domain; InterPro: IPR012993 This 82.72
KOG2549576 consensus Transcription initiation factor TFIID, s 82.64
KOG1087470 consensus Cytosolic sorting protein GGA2/TOM1 [Int 82.31
KOG04141251 consensus Chromosome condensation complex Condensi 81.98
PF14664 371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 81.56
PF14664371 RICTOR_N: Rapamycin-insensitive companion of mTOR, 81.45
PF08161198 NUC173: NUC173 domain; InterPro: IPR012978 This is 80.85
PF08506370 Cse1: Cse1; InterPro: IPR013713 The exchange of ma 80.78
PF12074339 DUF3554: Domain of unknown function (DUF3554); Int 80.74
KOG1061734 consensus Vesicle coat complex AP-1/AP-2/AP-4, bet 80.65
KOG1943 1133 consensus Beta-tubulin folding cofactor D [Posttra 80.61
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=9.6e-48  Score=433.63  Aligned_cols=506  Identities=24%  Similarity=0.343  Sum_probs=386.3

Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhhC-
Q 000599          790 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI-  868 (1400)
Q Consensus       790 R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klg-  868 (1400)
                      ..+|+..|..++..-.-..    .++..+.+.+.+-+.+.+-+...   +++..++..+...+..|+..=+-.+|.|.| 
T Consensus         2 k~~~~~~l~~~i~d~~~~~----~~~k~~~~~~~~~~~e~~~~~~l---~~~S~~~rt~~srls~w~~l~l~k~~~k~g~   74 (516)
T KOG2956|consen    2 KREGIKNLNQIITDPNLCP----LEIKNIGDTLNRLLAEGNNTLVL---ETISIFVKTHYSRLSNWLKLALGKLFAKKGA   74 (516)
T ss_pred             cchhhhhhhhhhcccccCh----HHHHHHhhhHHHhhhcccceeee---ehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3567777777776532221    36778888888888887776543   999999999999999999999999999998 


Q ss_pred             CchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccC---CCchhHHHHHHHHHHHHhhhhcCCCCCCCcchHHHHHHhh
Q 000599          869 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL  945 (1400)
Q Consensus       869 D~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~---~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i  945 (1400)
                      +....+.+..-.....+...|++-.|+. +|.++.+.   ..||.|...++|++.++.+|. ..+...+....+.++.|+
T Consensus        75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~-~~g~s~~t~~~~~s~rkm  152 (516)
T KOG2956|consen   75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYP-ERGTSPNTKETKAAIRKM  152 (516)
T ss_pred             HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhccccccc-ccCCCCCCCcchhhhhhc
Confidence            9999999999999999999999999999 99999875   479999999999999999874 444455678889999999


Q ss_pred             cccccC-CCHH-HHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHHhhhcchhHHHHHHHhhhhhhhcccCCCC
Q 000599          946 TPLVHD-KNTK-LKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY 1023 (1400)
Q Consensus       946 ~~l~~d-ks~~-vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1023 (1400)
                      .+|+.| +... +-......+.++|..+ -..|......|++.++++..+.++.              +..++.    .+
T Consensus       153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~~~--------------n~~~~~----~~  213 (516)
T KOG2956|consen  153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSLQS--------------NGIDNG----SP  213 (516)
T ss_pred             cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHHHh--------------hCcCCC----CC
Confidence            999988 4433 4455566677777777 3358888888999999997665552              221110    11


Q ss_pred             CCCCC-CCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccchhhcccccCCCCCCccchHHHhhhccCCCCcCCCc
Q 000599         1024 DPSDV-VGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS 1102 (1400)
Q Consensus      1024 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (1400)
                      ++... .+..+...+...+-........+.++.                          .++.+..    +         
T Consensus       214 ~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~--------------------------~~~~~~~----~---------  254 (516)
T KOG2956|consen  214 SPSAEKERFDSSNNKPSLPLSPPEEEKPGLGST--------------------------KVNPEEL----R---------  254 (516)
T ss_pred             CchhhhcccccccccccccCCChhhcccCCCcc--------------------------ccCcccc----c---------
Confidence            01000 000000000000000000000000000                          0000000    0         


Q ss_pred             cccCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCcccCCCCCCccccccCCCCCCCCHHHHHHHhhcCCCC
Q 000599         1103 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 1182 (1400)
Q Consensus      1103 ~~~~~~~s~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ll~~l~~~~~~ 1182 (1400)
                         .         +.++.+...  .     ....+..+.++..+              .+.|+.+.|.++|++++.+.  
T Consensus       255 ---~---------~n~~~~~~~--l-----~e~~~~~~~~~~~p--------------~~~~~~~~v~~~l~~~~g~e--  299 (516)
T KOG2956|consen  255 ---L---------SNETERLSR--L-----EEYSTDDSMDQLTP--------------NSVDQSALVADLLKEISGSE--  299 (516)
T ss_pred             ---c---------ccchhhhhh--c-----hhhccCcchhhCCC--------------CCcchhHHHHHHHHhccCcc--
Confidence               0         000000000  0     00111111111111              12234456889999998883  


Q ss_pred             ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Q 000599         1183 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 1261 (1400)
Q Consensus      1183 ~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d-~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~ 1261 (1400)
                      ..++++.|+.+|..++.++++.+|++||++||..++++|.| .++.+++.||++|++||++|+.+|.+|+|+.++|+|++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea  379 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA  379 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence            26899999999999999999999999999999999999999 77889999999999999999999999999999999999


Q ss_pred             hcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000599         1262 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1341 (1400)
Q Consensus      1262 ~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d 1341 (1400)
                      ++|++++|.+.|++++.+++..+.|.+||.+|+++|.+.++++.+.||||+++++++++.|+|...+|+|+|+++++|+.
T Consensus       380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S  459 (516)
T KOG2956|consen  380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS  459 (516)
T ss_pred             HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence            99999999999999888888888999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHhh-hhcchhhhhhcHHHHHHHHHHHHhhhhcccCcccC
Q 000599         1342 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1397 (1400)
Q Consensus      1342 ~~seVRkaAv~~lv~~~~~lg-e~~~p~l~~L~~s~~kll~~yi~r~~~~~~~~~~~ 1397 (1400)
                      +++.|||+||||||++|..+| ++|+|||..|+.+|++|||+||+|+++.++|+++|
T Consensus       460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~  516 (516)
T KOG2956|consen  460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD  516 (516)
T ss_pred             chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence            999999999999999999999 69999999999999999999999999999999875

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] Back     alignment and domain information
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2933 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2956 consensus CLIP-associating protein [General function prediction only] Back     alignment and domain information
>KOG0212 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PTZ00429 beta-adaptin; Provisional Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0915 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PRK09687 putative lyase; Provisional Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] Back     alignment and domain information
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1248 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG4524 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B Back     alignment and domain information
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein) Back     alignment and domain information
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans) Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13251 DUF4042: Domain of unknown function (DUF4042) Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] Back     alignment and domain information
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting) Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG1243 consensus Protein kinase [General function prediction only] Back     alignment and domain information
>KOG2032 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs) Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>TIGR02270 conserved hypothetical protein Back     alignment and domain information
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein Back     alignment and domain information
>KOG2259 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription [] Back     alignment and domain information
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II Back     alignment and domain information
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional Back     alignment and domain information
>KOG4653 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>KOG1837 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] Back     alignment and domain information
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain Back     alignment and domain information
>KOG2137 consensus Protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule) Back     alignment and domain information
>PF10363 DUF2435: Protein of unknown function (DUF2435) Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG2149 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning] Back     alignment and domain information
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1413 FOG: HEAT repeat [Energy production and conversion] Back     alignment and domain information
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [] Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion Back     alignment and domain information
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor Back     alignment and domain information
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal Back     alignment and domain information
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex Back     alignment and domain information
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only] Back     alignment and domain information
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus Back     alignment and domain information
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown] Back     alignment and domain information
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1 Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [] Back     alignment and domain information
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term Back     alignment and domain information
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [] Back     alignment and domain information
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane Back     alignment and domain information
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised Back     alignment and domain information
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1400
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 5e-39
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 1e-23
2of3_A266 ZYG-9; multifunctional macromolecule, kinetochore, 5e-12
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 8e-35
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 6e-27
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 8e-19
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 1e-04
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 2e-32
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 2e-13
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 1e-06
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 2e-31
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 1e-08
4ffb_C278 Protein STU2; tubulin fold, heat repeats, cytoskel 6e-08
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 4e-15
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-14
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-09
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 9e-09
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-08
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-07
1u6g_C1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 3e-07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 5e-07
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 1e-04
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 2e-04
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 5e-15
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 3e-10
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 7e-09
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 8e-08
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-07
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 8e-07
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 4e-05
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 6e-05
1b3u_A 588 Protein (protein phosphatase PP2A); scaffold prote 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-15
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
1vt4_I1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 5e-10
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-08
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 4e-08
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 8e-08
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 1e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 9e-05
4fdd_A852 Transportin-1; heat repeats, karyopherin, nuclear 2e-04
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 3e-04
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 8e-04
2iw3_A 986 Elongation factor 3A; acetylation, ATP-binding, pr 3e-09
2iw3_A986 Elongation factor 3A; acetylation, ATP-binding, pr 7e-05
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 2e-08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 7e-08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 8e-08
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 4e-05
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 3e-04
2bpt_A 861 Importin beta-1 subunit; nuclear transport, nucleo 4e-04
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 2e-06
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 4e-05
1oyz_A280 Hypothetical protein YIBA; structural genomics, PS 3e-04
2db0_A253 253AA long hypothetical protein; heat repeats, hel 2e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-06
2db0_A253 253AA long hypothetical protein; heat repeats, hel 3e-05
2db0_A253 253AA long hypothetical protein; heat repeats, hel 6e-04
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 3e-06
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 2e-04
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 1e-05
3ltm_A211 Alpha-REP4; protein engineering, heat-like repeat, 2e-04
1qgr_A 876 Protein (importin beta subunit); transport recepto 2e-05
1qgr_A876 Protein (importin beta subunit); transport recepto 9e-05
1qgr_A 876 Protein (importin beta subunit); transport recepto 2e-04
1qgr_A876 Protein (importin beta subunit); transport recepto 2e-04
3ltj_A201 Alpharep-4; protein engineering, heat-like repeat, 3e-05
1lrv_A244 LRV, leucine-rich repeat variant; leucine-rich rep 3e-04
1te4_A131 Conserved protein MTH187; methanobacterium thermoa 8e-04
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
 Score =  145 bits (367), Expect = 5e-39
 Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 9/212 (4%)

Query: 11  KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASA-A 69
           KD K+ +A ++ L +L + S +SL S     L  C L    + N       L+       
Sbjct: 58  KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTL-RFFETNPAALIKVLELCKVIVE 116

Query: 70  VLSGEHFKL---HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYA 126
           ++      +     +A VP ++ + G+AK  +R + R ++  L +V  P  +       A
Sbjct: 117 LIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD-A 175

Query: 127 WTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEM 186
              ++ R R E    +   I     + L    ++   +   + D +  VR AAI  +   
Sbjct: 176 LKSKNARQRSECLLVIEYYITNAGISPLKS-LSVEKTVAPFVGDKDVNVRNAAINVLVAC 234

Query: 187 YTYAGPQFRDELHRHNLPNSMVKDINARLERI 218
           + + G Q         + +     +  R++R 
Sbjct: 235 FKFEGDQMWKAA--GRMADKDKSLVEERIKRT 264
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 Back     alignment and structure
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} Length = 278 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 Back     alignment and structure
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 Back     alignment and structure
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244 Back     alignment and structure
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1400
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-20
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-16
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-12
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-11
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 1e-10
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 2e-09
d1u6gc_ 1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 3e-09
d1u6gc_1207 a.118.1.2 (C:) Cullin-associated NEDD8-dissociated 6e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-08
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 4e-07
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 2e-06
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-05
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 1e-04
d1b3ua_588 a.118.1.2 (A:) Constant regulatory domain of prote 0.001
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-08
d1qbkb_ 888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 2e-07
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 8e-07
d1qbkb_888 a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi 4e-05
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 6e-07
d2vglb_579 a.118.1.10 (B:) Adaptin beta subunit N-terminal fr 2e-04
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 9e-07
d2bpta1 861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 2e-06
d2bpta1861 a.118.1.1 (A:1-861) Importin beta {Baker's yeast ( 0.003
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 7e-06
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 4e-05
d1ibrb_458 a.118.1.1 (B:) Importin beta {Human (Homo sapiens) 4e-04
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 9e-06
d2vgla_584 a.118.1.10 (A:) Adaptin alpha C subunit N-terminal 3e-05
d1qgra_ 876 a.118.1.1 (A:) Importin beta {Human (Homo sapiens) 2e-05
d1lrva_233 a.118.1.5 (A:) Leucine-rich repeat variant {Azotob 4e-05
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (237), Expect = 2e-20
 Identities = 121/1015 (11%), Positives = 268/1015 (26%), Gaps = 67/1015 (6%)

Query: 5   LELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQS 64
           LE   + D   R      L   L+     L       +V   L LL+D N +V   A++ 
Sbjct: 9   LEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKC 68

Query: 65  LASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI------- 117
           L        E+       +V  +   +   K+ +RD +   L T++    P         
Sbjct: 69  LGPLVSKVKEY---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAA 125

Query: 118 -----IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPN 172
                I  R  S         V+ E    +   +       +    +IL  +L  L  P 
Sbjct: 126 NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPR 185

Query: 173 PGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSS--DGLPN 230
             VR+  I+ +  +    G     +L  H L + + K+ +    R   Q  ++      +
Sbjct: 186 LAVRKRTIIALGHLVMSCGNIVFVDLIEHLL-SELSKNDSMSTTRTYIQCIAAISRQAGH 244

Query: 231 TFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIG 290
                  K      K  +       RE  +   E    +  + +  +           I 
Sbjct: 245 RIGEYLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-------TIIN 296

Query: 291 STLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQAC 350
             L             +  +   +         +G   +           RR++      
Sbjct: 297 ICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAA-----A 351

Query: 351 HLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRI 410
             L  +            +   P L          +     +   ++L+  + V+     
Sbjct: 352 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCD 411

Query: 411 ADCAKNDRNAVLRAR----CCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERS 466
            D  +     +   +        AL            Q   ++  +L+            
Sbjct: 412 PDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIP 471

Query: 467 RRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVA 526
             +     P I   +N++    + +       +  + L       +      +  + +  
Sbjct: 472 VLV-----PGIIFSLNDKSSSSNLKI------DALSCLYVILCNHSPQVFHPHVQALVPP 520

Query: 527 MDRSSNLSSGASLSSGLLLSQA--KSLNKATERSLESVLNASKQKVSAIESMLRGLEISD 584
           +            S  LL++Q   K +    + S        K   +     L+  +I  
Sbjct: 521 VVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQ 580

Query: 585 KQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMV 644
           +     +      +     +        +        N     +T   L   +     + 
Sbjct: 581 EVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKID 640

Query: 645 LSDIITQIQASKDSGKLSYHSNT--ESLSSLSSYSTRRGSEKLQERVSVEENDMREARRF 702
           L  ++ +      S            +LS+L               +    +++      
Sbjct: 641 LRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISE 700

Query: 703 VNPHIDRQYLDASYKDGNFRDSHNS-YIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLG 761
            + H+ +  +           S  S    +    L+    +  +      +  D    L 
Sbjct: 701 SDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAMLDFFQALV 760

Query: 762 EMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKL 821
                  G   L   L+  +   S       ++  +   +    +   +       V+  
Sbjct: 761 VTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEG---PAVVGQ 817

Query: 822 FFQHLDDPHH--KVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCS 879
           F Q + +      +   AL +L ++              +   +      P E V+   S
Sbjct: 818 FIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSG---QLELKSVILEAFSSPSEEVKSAAS 874

Query: 880 TTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK 939
             L  +S   ++   LP +L+ +  Q   +         + SL +   ++   G    ++
Sbjct: 875 YALGSISV-GNLPEYLPFVLQEITSQPKRQ------YLLLHSLKEIISSASVVGLKPYVE 927

Query: 940 LWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRA 994
              A L           +     C +   T  D   +L  +    +   +  R +
Sbjct: 928 NIWALLLKHCECAEEGTRNVVAEC-LGKLTLIDPETLLPRLKGYLISGSSYARSS 981
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 876 Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1400
d1u6gc_1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 100.0
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.93
d1b3ua_588 Constant regulatory domain of protein phosphatase 99.88
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.85
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.84
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 99.82
d2bpta1861 Importin beta {Baker's yeast (Saccharomyces cerevi 99.69
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.63
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.6
d2vglb_579 Adaptin beta subunit N-terminal fragment {Human (H 99.51
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.47
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 99.28
d1qgra_876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.2
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 99.12
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 99.01
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.84
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 98.7
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.69
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 98.68
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 98.64
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 98.52
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 98.47
d2vgla_584 Adaptin alpha C subunit N-terminal fragment {Mouse 98.18
d1oyza_276 Hypothetical protein YibA {Escherichia coli [TaxId 97.8
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.75
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 97.54
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 97.45
d1te4a_111 MTH187 {Archaeon Methanobacterium thermoautotrophi 96.87
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.63
d1wa5c_959 Exportin Cse1p {Baker's yeast (Saccharomyces cerev 96.38
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 95.56
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 95.45
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 94.71
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 94.53
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 94.31
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 94.27
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 93.36
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 91.93
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 90.79
d1dvpa1145 Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 90.47
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 89.6
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 86.59
d1lrva_233 Leucine-rich repeat variant {Azotobacter vinelandi 84.8
d1lsha1336 Lipovitellin-phosvitin complex, superhelical domai 81.26
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-28  Score=212.05  Aligned_cols=1064  Identities=15%  Similarity=0.171  Sum_probs=555.2

Q ss_pred             HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88998831999999999999999999952136775869999999996520488243899999999999983145676665
Q 000599            2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN   81 (1400)
Q Consensus         2 e~~le~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~   81 (1400)
                      -.+++++.+.|+..|.-|++.|.+.++......+......+++.+...+.|+|..|+..|+.+|+.++...+.   ..+.
T Consensus         6 ~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~---~~~~   82 (1207)
T d1u6gc_           6 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVE   82 (1207)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHH
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHH
T ss_conf             9999866798872999999999998723014457688999999999996799879999999999999976768---6699


Q ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             3699999983799946999999999999997163------------5899998556531498347999999999999740
Q 000599           82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP------------TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF  149 (1400)
Q Consensus        82 ~ilp~LieKLgD~K~~vre~a~~~L~~l~e~~~p------------~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~i~~f  149 (1400)
                      .+++.|+..+.+.+..+|+.+..+|..+......            ..++..+.....+.+++.++.+++..+...+..|
T Consensus        83 ~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~  162 (1207)
T d1u6gc_          83 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQ  162 (1207)
T ss_dssp             HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             99999999856896326599999999999966320023112788999999999876347777899999999999999875


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHH----H----HHHHCC---CCCHHHHHHHHHHHHHH
Q ss_conf             676404665269989974079994379999999999986217368----9----754019---99956699999999751
Q 000599          150 SATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQF----R----DELHRH---NLPNSMVKDINARLERI  218 (1400)
Q Consensus       150 g~~~l~~~k~~ip~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l----~----~~L~~~---~l~~~~l~~i~~~~~~~  218 (1400)
                      |....+....+++.+...+.|++..||..|+.++..+..+.+...    .    ..+...   ..+..-++.+..- .+.
T Consensus       163 g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l-~~~  241 (1207)
T d1u6gc_         163 GGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAI-SRQ  241 (1207)
T ss_dssp             CSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHH
T ss_conf             6766877999999999880899989999999999999987799879999999999870599889999999999999-987


Q ss_pred             CCCC-CC-CCCCC---CCCHH---HHHCC---------CCCCCCCCCCCCC----CCCCCCCCCCC--CCCCCCCCCCCC
Q ss_conf             7889-99-89998---86101---00101---------3589888983222----45544566899--887545678755
Q 000599          219 QPQI-RS-SDGLP---NTFAA---LEIKT---------ASFNPKKSSPKAK----SSTRETSLFGG--EDITEKLIEPIK  275 (1400)
Q Consensus       219 ~~~~-~~-~~~~~---~~~~~---~~~r~---------~s~~~~r~~~~~~----ss~~~~~~~g~--~~~~~~~v~~i~  275 (1400)
                      .+.. .+ .+...   ..+..   .+.|.         ....|....+-..    ....-...+..  .+..........
T Consensus       242 ~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~  321 (1207)
T d1u6gc_         242 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMD  321 (1207)
T ss_dssp             SSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC----------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             61546777999999999882586177789999999999986746544559999999999874073000346788776555


Q ss_pred             CCCHHHHHHHHHHHHHH-C--CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf             57747799999987510-0--89989789999999999987059999501788699989989854165136999999999
Q 000599          276 VYSEKELIREFEKIGST-L--VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHL  352 (1400)
Q Consensus       276 i~s~~dl~~~l~ki~~~-l--~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~l~~~l~Dlrs~Vv~~Ac~~  352 (1400)
                      . ...   +........ +  ..+..|+.|..+.+.|..++.....   .+...+..+...+...+.|.+..|...++.+
T Consensus       322 ~-~~~---~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~---~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~  394 (1207)
T d1u6gc_         322 A-DGG---DDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE---MLPEFYKTVSPALISRFKEREENVKADVFHA  394 (1207)
T ss_dssp             ------------------------CTTHHHHHHHHHHHHHHTTCCT---THHHHHTTTHHHHHSTTSCSSSHHHHHHHHH
T ss_pred             H-HCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             4-011---01356678887522013389999999999868988899---9999999999999998459854899999999


Q ss_pred             HHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCC------CCHH
Q ss_conf             9999999645-------------------28999999999999984011479999999999999972797------0128
Q 000599          353 LCFLSKELLG-------------------DFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA------VRVL  407 (1400)
Q Consensus       353 l~~la~~L~~-------------------~f~~~a~~~lp~Ll~~~~~~k~vi~~sa~~al~~ii~~~~~------~rll  407 (1400)
                      +..+....+.                   .+..+...+++.+.+.+.+....++..+..++..++...+.      ..++
T Consensus       395 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l~~~~  474 (1207)
T d1u6gc_         395 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLV  474 (1207)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHH
T ss_pred             HHHHHHHCCCHHHHHHCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             99999730321255515488876302699999876999999999864886567888999999999972257777667567


Q ss_pred             HHHHHHHHHCC--CHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHC
Q ss_conf             99999963079--9878999999999998619996000013899999999971899969999998207999999975301
Q 000599          408 PRIADCAKNDR--NAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEED  485 (1400)
Q Consensus       408 ~~i~~~l~~~K--n~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e~A~~l~~~l~~~~qk~L~~~~  485 (1400)
                      +.+...+. ++  ...+|..++.++..++...... .+..++..+.+.+..++.|.+.......+..++.- .+.+....
T Consensus       475 ~~i~~~l~-~~~~~~~~~~~al~~l~~l~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~i~~~al~~~~~l-~~~l~~~~  551 (1207)
T d1u6gc_         475 PGIIFSLN-DKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQL-VKVIRPLD  551 (1207)
T ss_dssp             HHHHHHTT-CSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHHCCSS
T ss_pred             HHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHC
T ss_conf             89999976-02641688899999999998722678-89999876334688887123088999999999988-98750001


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             98865568873222476554465565566778998640110134555678987673033677532210000024677533
Q 000599          486 GGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNA  565 (1400)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~rs~~~v~~a  565 (1400)
                              .+.                     +.        +          + ...+   .+.....-.    .....
T Consensus       552 --------~~~---------------------~~--------~----------~-~~~~---~~l~~~~~~----~l~~~  576 (1207)
T d1u6gc_         552 --------QPS---------------------SF--------D----------A-TPYI---KDLFTCTIK----RLKAA  576 (1207)
T ss_dssp             --------SCC---------------------CC--------C----------C-HHHH---HHHHHHHHH----HHSCS
T ss_pred             --------CCH---------------------HH--------H----------H-HHHH---HHHHHHHHH----HHHHC
T ss_conf             --------102---------------------55--------4----------4-7889---999999999----98731


Q ss_pred             ---HHHCHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ---0000135797---4204454567899976656667888999999999997568888887421123456688778888
Q 000599          566 ---SKQKVSAIES---MLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNR  639 (1400)
Q Consensus       566 ---~~~~~~~~~~---~~~g~~~~~~~~~~~~~s~s~~~~~~~p~s~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~r  639 (1400)
                         ...+..+...   ......  +...               +  .       .+       ..+     +        
T Consensus       577 ~~~~e~~~~al~~l~~l~~~~~--~~~~---------------~--~-------~~-------~~l-----~--------  610 (1207)
T d1u6gc_         577 DIDQEVKERAISCMGQIICNLG--DNLG---------------S--D-------LP-------NTL-----Q--------  610 (1207)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHTG--GGCC---------------T--H-------HH-------HHH-----H--------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH--HHHH---------------H--H-------HH-------HHH-----H--------
T ss_conf             3101788989999998988765--5658---------------8--8-------88-------887-----7--------


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             99876530243100136899888788866567788765457865444343100012366320379864311122233799
Q 000599          640 NGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDG  719 (1400)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  719 (1400)
                              ...    . +.. ..              ..|.     .        ..+.......               
T Consensus       611 --------~l~----~-~l~-~~--------------~~r~-----~--------a~~~l~~i~~---------------  634 (1207)
T d1u6gc_         611 --------IFL----E-RLK-NE--------------ITRL-----T--------TVKALTLIAG---------------  634 (1207)
T ss_dssp             --------HHH----H-HTT-SS--------------SHHH-----H--------HHHHHHHHTT---------------
T ss_pred             --------HHH----H-HHC-CH--------------HHHH-----H--------HHHHHHHHHH---------------
T ss_conf             --------788----8-742-30--------------4579-----9--------9999999987---------------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             87778898888753210002689877665556566421135887766789899688864489999983567999999999
Q 000599          720 NFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRS  799 (1400)
Q Consensus       720 ~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~W~~R~egl~~L~~  799 (1400)
                                                 .+...          ....+..   .+.+.+.. .+.+.+|..|..++..|..
T Consensus       635 ---------------------------~~~~~----------~~~~~l~---~~~~~l~~-~l~~~~~~~r~~al~~L~~  673 (1207)
T d1u6gc_         635 ---------------------------SPLKI----------DLRPVLG---EGVPILAS-FLRKNQRALKLGTLSALDI  673 (1207)
T ss_dssp             ---------------------------CSSCC----------CCHHHHH---HHHHHHHH-HTTSCCHHHHHHHHHHHHH
T ss_pred             ---------------------------HCCCH----------HHHHHHH---HHHHHHHH-HCCCCHHHHHHHHHHHHHH
T ss_conf             ---------------------------31321----------4789998---88889877-5014438899999999999


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCC--HHHHHHH
Q ss_conf             98449986589999899999998752069724799999998875510169870458998899999730796--2555899
Q 000599          800 LLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDP--KELVRQP  877 (1400)
Q Consensus       800 ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klgD~--k~~vr~~  877 (1400)
                      +++.....+..  ..+..++..+...+.|++..+...+++.+..++..++..+..+...+++.++..+.+.  .+.....
T Consensus       674 l~~~~~~~~~~--~~~~~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~~~~~~~~~~~il~~l~~~~~s~l~~~~~~~~  751 (1207)
T d1u6gc_         674 LIKNYSDSLTA--AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA  751 (1207)
T ss_dssp             HHHHCCTTCCH--HHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHH
T ss_pred             HHHHCCCCCHH--HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf             99845421006--7776677763244434407889999999888886263344667888899999986082355546999


Q ss_pred             HHHHHHHHHCCCCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCC-CC-
Q ss_conf             9999999860299021279999852137----99125799999999998552049999887301799999662223-58-
Q 000599          878 CSTTLDIVSKTYSVDSLLPALLRSLDEQ----RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLV-HD-  951 (1400)
Q Consensus       878 ~~~~L~~~~~~~~~~~~l~~l~r~l~~~----~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l~-~d-  951 (1400)
                      ....+..+.....+......+.+.+.+.    .....+...++.+...+........     ......+..++.-. .+ 
T Consensus       752 ~~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-----~~~~~~l~~~l~~~~~~~  826 (1207)
T d1u6gc_         752 MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACP-----KEGPAVVGQFIQDVKNSR  826 (1207)
T ss_dssp             HHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSC-----CCSHHHHTTTTTTTTTTT
T ss_pred             HHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCC
T ss_conf             999999998606665444999999987512543034578899999999999998632-----667999999999884342


Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             99789999999999985106947-------89999840899999999999862061358889998631110003578999
Q 000599          952 KNTKLKEAAITCIISVYTHYDST-------AVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSYD 1024 (1400)
Q Consensus       952 ks~~vR~aA~~~l~~ly~~~~~~-------~~~~~l~~Lp~~~~~~l~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 1024 (1400)
                      .+..+|..|..++..+..+.+..       .+...+.+-.+..+.....+|.......-.....++.+.-+.     .  
T Consensus       827 ~~~~~~~~al~~Lge~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~aAa~aLg~l~~~~~~~~lp~il~~l~~-----~--  899 (1207)
T d1u6gc_         827 STDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITS-----Q--  899 (1207)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCCCSCTHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHS-----C--
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----C--
T ss_conf             259999999999999998525311599999999980899889999999999999976288875999998724-----7--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCC
Q ss_conf             99987888744444566777777778899877889987763000000126679888710257775310478886777666
Q 000599         1025 PSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSSKT 1104 (1400)
Q Consensus      1025 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1104 (1400)
                      +        ...+....--                         .+... +.+...-....+.+.+.+-...+       
T Consensus       900 ~--------~~~~~ll~al-------------------------~ei~~-~~~~~~~~~~~~~i~~~L~~~~~-------  938 (1207)
T d1u6gc_         900 P--------KRQYLLLHSL-------------------------KEIIS-SASVVGLKPYVENIWALLLKHCE-------  938 (1207)
T ss_dssp             G--------GGHHHHHHHH-------------------------HHHHH-SSCSTTTHHHHHHHHHHHTTCCC-------
T ss_pred             C--------HHHHHHHHHH-------------------------HHHHH-HCCHHHHHHHHHHHHHHHHHHHC-------
T ss_conf             3--------5899999999-------------------------99998-54555468789999999998817-------


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf             67889988777888875565664-22222234679999999966679899853223677878999789999841099999
Q 000599         1105 KDLTGSNTYLEGFSTPRIDINGL-RDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDGS 1183 (1400)
Q Consensus      1105 ~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ll~~l~~~~~~~ 1183 (1400)
                                    ++.-+.... .+.   -++.                       ...+....++.+...+.+.   +
T Consensus       939 --------------~~~~~vr~~~a~~---lg~L-----------------------~~~~~~~~lp~L~~~l~~~---~  975 (1207)
T d1u6gc_         939 --------------CAEEGTRNVVAEC---LGKL-----------------------TLIDPETLLPRLKGYLISG---S  975 (1207)
T ss_dssp             --------------CSSTTHHHHHHHH---HHHH-----------------------HHSSGGGTHHHHTTTSSSS---C
T ss_pred             --------------CCCHHHHHHHHHH---HHHH-----------------------HHCCHHHHHHHHHHHHCCC---C
T ss_conf             --------------9718799999999---9988-----------------------7027899999999985799---9


Q ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHC
Q ss_conf             22799999999999830892359998999999999983188947999999999999963445430019999999999945
Q 000599         1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 1263 (1400)
Q Consensus      1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~il~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~ 1263 (1400)
                      +..|..++..+..++.. .......++..++..++..++|++..||..|+.+|..++++.+.-+.+++..++|.|++...
T Consensus       976 ~~~r~~ai~~l~~~~~~-~~~~~~~~l~~li~~ll~~l~d~~~~vR~~al~~l~~~~~~~p~li~~~l~~llp~l~~~t~ 1054 (1207)
T d1u6gc_         976 SYARSSVVTAVKFTISD-HPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLYNETK 1054 (1207)
T ss_dssp             HHHHHHHHHHTGGGCCS-SCCTHHHHHHHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999999999999986-65546789999999999986799989999999999999984869899999999999999851


Q ss_pred             ------------------CCCHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Q ss_conf             ------------------992779999999999999213----9143897421200377324596999999999832298
Q 000599         1264 ------------------DAVPKVSNEAEHCLTVVLSQY----DPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1321 (1400)
Q Consensus      1264 ------------------d~~k~V~~aA~~~l~~i~~~~----~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~ 1321 (1400)
                                        |.+.+++.+|-+|+-+++..+    +....+..+..++.. ++-+++.|.-|+.+++...| 
T Consensus      1055 ~~~e~ir~v~~gp~kh~~d~gl~~rk~a~e~~~~~l~~~~~~~~~~~~~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~- 1132 (1207)
T d1u6gc_        1055 VRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEFLNHVEDGLKD-HYDIKMLTFLMLVRLSTLCP- 1132 (1207)
T ss_dssp             CCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHHSCC-
T ss_pred             CCHHHEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHHCC-
T ss_conf             2564303450589511058858999999999999998755025899999999853565-48899999999999998693-


Q ss_pred             HHHHHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHH
Q ss_conf             899944235699999981599------------877999999999999998512001122211177787
Q 000599         1322 EELMAQLPSFLPALFEAFGNQ------------SADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1378 (1400)
Q Consensus      1322 ~~l~~~l~~liP~l~~~~~d~------------~seVRkaAv~~lv~~~~~lGe~~~p~l~~L~~s~~k 1378 (1400)
                      ..+..+|..++|.+.+-+.-.            .-|..+++..|+.++-.+-+-+.-|.+..+..--++
T Consensus      1133 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~e~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 1201 (1207)
T d1u6gc_        1133 SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAALLTIPEAEKSPLMSEFQSQISS 1201 (1207)
T ss_dssp             HHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHTTSSCSCSSSSSCCCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
T ss_conf             878999999999999997016673504301677999999999999999738985458379999999873
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} Back     information, alignment and structure