Citrus Sinensis ID: 000615
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1389 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PC87 | 1453 | ABC transporter G family | yes | no | 0.974 | 0.931 | 0.697 | 0.0 | |
| Q7PC84 | 1454 | ABC transporter G family | no | no | 0.979 | 0.935 | 0.689 | 0.0 | |
| Q2PCF1 | 1461 | Pleiotropic drug resistan | N/A | no | 0.966 | 0.918 | 0.688 | 0.0 | |
| Q76CU2 | 1434 | Pleiotropic drug resistan | N/A | no | 0.958 | 0.928 | 0.631 | 0.0 | |
| Q8GU89 | 1450 | Pleiotropic drug resistan | yes | no | 0.958 | 0.917 | 0.603 | 0.0 | |
| Q8GU88 | 1444 | Putative pleiotropic drug | yes | no | 0.968 | 0.931 | 0.610 | 0.0 | |
| Q9M9E1 | 1423 | ABC transporter G family | no | no | 0.956 | 0.933 | 0.607 | 0.0 | |
| Q0JLC5 | 1457 | Pleiotropic drug resistan | no | no | 0.956 | 0.912 | 0.621 | 0.0 | |
| A2WSH0 | 1457 | Pleiotropic drug resistan | N/A | no | 0.956 | 0.912 | 0.620 | 0.0 | |
| Q8GU92 | 1464 | Probable pleiotropic drug | no | no | 0.956 | 0.907 | 0.625 | 0.0 |
| >sp|Q7PC87|AB34G_ARATH ABC transporter G family member 34 OS=Arabidopsis thaliana GN=ABCG34 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 2033 bits (5266), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 952/1365 (69%), Positives = 1151/1365 (84%), Gaps = 12/1365 (0%)
Query: 7 DDLARSFSVRGGQSISSGSRRSWASA---SIREVWNAP-DNVFSRSER-QDDEEELRWAA 61
+DL R+ S RG S+ S S RS A A S R+V+ P D+VF RS+R ++D+ ELRWAA
Sbjct: 6 EDLVRTMSGRG--SLGSTSHRSLAGAASKSFRDVFAPPTDDVFGRSDRREEDDVELRWAA 63
Query: 62 IERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKR 121
+ERLPTYDRL+KGML Q + +GK+ +VDV+NLA ++KK L+E ILK VEEDNEKFL+R
Sbjct: 64 LERLPTYDRLRKGMLPQTMVNGKIGLEDVDVTNLAPKEKKHLMEMILKFVEEDNEKFLRR 123
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKK 181
+R RTDRVGIE+PKIEVRY++LSVEGDV +RALPTL NV LN +ES LGL HL+PSKK
Sbjct: 124 LRERTDRVGIEVPKIEVRYENLSVEGDVRSASRALPTLFNVTLNTIESILGLFHLLPSKK 183
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R + ILKD+SGI+KPSRMTLLLGPP +GKTTL+ ALAGKL L+ SG+ITYCGHE EF
Sbjct: 184 RKIEILKDISGIIKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGHEFREF 243
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
VPQ+TCAYISQHDLH GEMTVRE+LDFSGRCLGVGTRY+LL ELSRRE++AGIKPDPEID
Sbjct: 244 VPQKTCAYISQHDLHFGEMTVRESLDFSGRCLGVGTRYQLLTELSRREREAGIKPDPEID 303
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
AFMK++A++GQETSLVTDYVLK+LGLDICADT+VGD MRRGISGGQ+KR+TTGEMLVG A
Sbjct: 304 AFMKSIAISGQETSLVTDYVLKLLGLDICADTLVGDVMRRGISGGQRKRLTTGEMLVGPA 363
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
L+MDEISTGLDSSTTFQICKF++Q+VHI DVTM+++LLQPAPET++LFDDIILLSEGQ
Sbjct: 364 TALFMDEISTGLDSSTTFQICKFMRQLVHIADVTMVISLLQPAPETFELFDDIILLSEGQ 423
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFV 481
IVYQG RDNVLEFFE+MGFKCPERKG+ADFLQEVTSKKDQEQYW R+ PY Y+ V DF
Sbjct: 424 IVYQGSRDNVLEFFEYMGFKCPERKGIADFLQEVTSKKDQEQYWNRREHPYSYVSVHDFS 483
Query: 482 EGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFV 541
GF SFH GQQ+AS+ RVPYDK++ HPA+LV +KYGIS +LF+ACF REWLLMKRNSFV
Sbjct: 484 SGFNSFHAGQQLASEFRVPYDKAKTHPAALVTQKYGISNKDLFKACFDREWLLMKRNSFV 543
Query: 542 YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLR 601
Y+FKT Q+T MSLI MTVYFRTEM VG + G +++GALFFSL+N+MFNG AE A TV+R
Sbjct: 544 YVFKTVQITIMSLIAMTVYFRTEMHVGTVQDGQKFYGALFFSLINLMFNGMAELAFTVMR 603
Query: 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLA 661
LP+F+KQRD LFYP WAFALP +LL+IP+S+++S IW+ALTYYTIG+ P+A+RFF+Q LA
Sbjct: 604 LPVFFKQRDFLFYPPWAFALPGFLLKIPLSLIESVIWIALTYYTIGFAPSAARFFRQLLA 663
Query: 662 FFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYIS 721
+F ++ M+L L+R + A+GRTEVI+N+ GT LL++ LGGF+++KDDI +L W YY S
Sbjct: 664 YFCVNQMALSLFRFLGALGRTEVIANSGGTLALLVVFVLGGFIISKDDIPSWLTWCYYTS 723
Query: 722 PMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGY 781
PMMYGQT+L++NEFL RW + N D IN T+G+VLLK RGF TE W+WI +GAL G+
Sbjct: 724 PMMYGQTALVINEFLDERWGSPNNDTRINAKTVGEVLLKSRGFFTEPYWFWICIGALLGF 783
Query: 782 SFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNV 841
+ LFNF +I AL YLNP+G+S +T + E+G+ + H G + +S+ + G
Sbjct: 784 TVLFNFCYIIALMYLNPLGNSKATTVVEEGKDKHKGSHSGTGGSVVELTSTSSHGP---- 839
Query: 842 TNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGV 901
+GM+LPFQPLSL F+N++Y+VDMPAEMK +GV DRLQLL V G FRPGVLTAL+GV
Sbjct: 840 -KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQGVEGDRLQLLRDVGGAFRPGVLTALVGV 898
Query: 902 SGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL 961
SGAGKTTLMDVLAGRKTGGY+EG I ISGYPKNQ TFARVSGYCEQNDIHSP+VTVYESL
Sbjct: 899 SGAGKTTLMDVLAGRKTGGYVEGSINISGYPKNQATFARVSGYCEQNDIHSPHVTVYESL 958
Query: 962 LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021
+YSAWLRLS+D+DTK R+MFV+EVMELVELK L +S+VGLPGV GLSTEQRKRLTIAVEL
Sbjct: 959 IYSAWLRLSADIDTKTREMFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLTIAVEL 1018
Query: 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081
VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDELLL+K
Sbjct: 1019 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELLLMK 1078
Query: 1082 RGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEV 1141
RGG+VIYAG LGH S KL+EYFEA+ GVPKIK+ YNPATWML+V+ S+E+Q+ +DFA++
Sbjct: 1079 RGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIKDGYNPATWMLDVTTPSMESQMSVDFAQI 1138
Query: 1142 YADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNA 1201
+ +SS+++RN+ELIKELSTPPPGS+DLYF TKY+QPF TQ +ACFWK YWS WR PQYNA
Sbjct: 1139 FVNSSVNRRNQELIKELSTPPPGSNDLYFRTKYAQPFSTQTKACFWKMYWSNWRYPQYNA 1198
Query: 1202 IRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVER 1261
IRF MT+VI + FGL++W G K K+QDL N FGAMY+ +FLG +NA +V P + +ER
Sbjct: 1199 IRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNNFFGAMYAAVLFLGATNAATVQPAVAIER 1258
Query: 1262 TVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFM 1321
TV+YRE+AAGM++A+PYA++QVAVEI+Y ++Q+ VY LILY+MIG+ W + KF F+Y+M
Sbjct: 1259 TVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGYDWTVVKFFWFYYYM 1318
Query: 1322 WASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
F+ FTLYGMM+VALTP Q+A I LSFFLS WNLFSGFL+ R
Sbjct: 1319 LTCFVYFTLYGMMLVALTPNYQIAGICLSFFLSFWNLFSGFLIPR 1363
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7PC84|AB39G_ARATH ABC transporter G family member 39 OS=Arabidopsis thaliana GN=ABCG39 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 2020 bits (5233), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 945/1370 (68%), Positives = 1145/1370 (83%), Gaps = 10/1370 (0%)
Query: 1 MSATVADDLARSFSVRGGQSISSGSRRSW--ASASIREVW-NAPDNVFSRSER-QDDEEE 56
M+A + D ++ G S++S S RS AS S R+V+ D VF RSER ++D+ E
Sbjct: 1 MAAMLGRDEDPVGALSGRVSLASTSHRSLVGASKSFRDVFMPQTDEVFGRSERREEDDME 60
Query: 57 LRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNE 116
LRWAAIERLPT+DRL+KGML Q +GK+ ++D++ L +DKK L+E IL VEEDNE
Sbjct: 61 LRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDKKHLMEMILSFVEEDNE 120
Query: 117 KFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHL 176
KFL+ +R RTDRVGIE+PKIEVRY+++SVEGDV +RALPTL NV LN LES LG HL
Sbjct: 121 KFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLFNVTLNTLESILGFFHL 180
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
+PSK++ ++ILKD+SGIVKPSRMTLLLGPP +GKTTL+ ALAGKL L+ SG+ITYCGH
Sbjct: 181 LPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGKLDDTLQMSGRITYCGH 240
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
E EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+L++ELSRREK+ GIKP
Sbjct: 241 EFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQLMSELSRREKEEGIKP 300
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
DP+IDAFMK++A++GQETSLVTDYVLKILGLDICAD + GD MRRGISGGQKKR+TTGEM
Sbjct: 301 DPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMRRGISGGQKKRLTTGEM 360
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
LVG A L+MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++LLQPAPET++LFDDIIL
Sbjct: 361 LVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISLLQPAPETFELFDDIIL 420
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIP 476
LSEGQIVYQGPRDNVLEFFE+ GF+CPERKGVADFLQEVTSKKDQEQYW ++ QPY Y+
Sbjct: 421 LSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKDQEQYWNKREQPYNYVS 480
Query: 477 VSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMK 536
VSDF GF +FH GQ++ S+ RVPYDK++ H A+LV +KYGIS WELF+ACF REWLLMK
Sbjct: 481 VSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISNWELFKACFDREWLLMK 540
Query: 537 RNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENA 596
RNSFVY+FKT Q+T MSLI MTVY RTEM VG + G +++GA+FFSL+N+MFNG AE A
Sbjct: 541 RNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAMFFSLINVMFNGLAELA 600
Query: 597 MTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFF 656
TV+RLP+FYKQRD LFYP WAFALP WLL+IP+S+++S IW+ LTYYTIG+ P+A+RFF
Sbjct: 601 FTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIGLTYYTIGFAPSAARFF 660
Query: 657 KQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRW 716
+Q LA+F ++ M+L L+R + A+GRTEVISN++GTF LLI+ +LGGF++AKDDI P++ W
Sbjct: 661 RQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTLGGFIIAKDDIRPWMTW 720
Query: 717 GYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVG 776
YY+SPMMYGQT++++NEFL RW + N D IN T+G+VLLK RGF TE W+WI +
Sbjct: 721 AYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLKSRGFFTEPYWFWICIV 780
Query: 777 ALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVG 836
AL G+S LFN +I AL YLNP+G+S +TV+EE +KQ+ EG + + SSS
Sbjct: 781 ALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRGTEGSVVELNSSS---- 836
Query: 837 AAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896
RGM+LPFQPLSL F+N++Y+VDMP+EMK +GV DRLQLL V G FRPG+LT
Sbjct: 837 --NKGPKRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRLQLLRDVGGAFRPGILT 894
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956
AL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFARVSGYCEQNDIHSP+VT
Sbjct: 895 ALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFARVSGYCEQNDIHSPHVT 954
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
VYESL+YSAWLRLS+D+D K R++FV+EVMELVELK L +S+VGLPGV GLSTEQRKRLT
Sbjct: 955 VYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVGLPGVDGLSTEQRKRLT 1014
Query: 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDE
Sbjct: 1015 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDE 1074
Query: 1077 LLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGI 1136
LLL+KRGG+VIYAG LGH S KL+EYFEAV GVPKI + YNPATWML+V+ S+E+Q+ +
Sbjct: 1075 LLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPATWMLDVTTPSMESQMSL 1134
Query: 1137 DFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRN 1196
DFA+++++SSL++RN+ELIK+LSTPPPGS D+YF TKY+Q F TQ +ACFWKQYWSYWR+
Sbjct: 1135 DFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFSTQTKACFWKQYWSYWRH 1194
Query: 1197 PQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPV 1256
PQYNAIRF MT+VI + FGLI+W G KT +QDL N FGAMY+ +FLG NA +V P
Sbjct: 1195 PQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYAAVLFLGALNAATVQPA 1254
Query: 1257 ICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCL 1316
I +ERTV+YRE+AAGM++A+PYA++QVAVEI+Y ++Q+ VY LILY+MIG W + KF
Sbjct: 1255 IAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLILYSMIGCNWTMAKFLW 1314
Query: 1317 FFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
F+Y+M SFI FTLYGMM++ALTP Q+A I +SFFLS+WNLFSGFL+ R
Sbjct: 1315 FYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFSGFLIPR 1364
|
May be a general defense protein. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q2PCF1|PDR2_NICPL Pleiotropic drug resistance protein 2 OS=Nicotiana plumbaginifolia GN=PDR2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1972 bits (5109), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 938/1362 (68%), Positives = 1138/1362 (83%), Gaps = 20/1362 (1%)
Query: 21 ISSGSR-RSW-ASASIREVWNAPDNVFS-------RSERQDDEEELRWAAIERLPTYDRL 71
+ S SR SW +S SIREV+ +VF R +++E+EL+WAAI+RLPTY+RL
Sbjct: 13 LRSNSRMSSWRSSQSIREVFGGSSDVFMKNYSTRWREMAEEEEKELKWAAIDRLPTYNRL 72
Query: 72 KKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGI 131
+KGM+ +V+ +G+VV HEVD++ L QDKK L+ESILK+VE+DNE+FL+R+R+RTDRVGI
Sbjct: 73 RKGMMKEVMSNGRVVHHEVDMTKLGNQDKKVLMESILKVVEDDNEQFLRRLRNRTDRVGI 132
Query: 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVS 191
EIPKIEVR+ +LSV GD +VGTRALPTLLN LN +E+ LGL+HL PSKKR V+IL+DVS
Sbjct: 133 EIPKIEVRFQNLSVGGDAYVGTRALPTLLNSTLNTIEAVLGLIHLSPSKKRVVKILEDVS 192
Query: 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
GI++PSRMTLLLGPPG+GKTT + ALAGK KDLR +GKITYCGHE +EFVPQRT AYIS
Sbjct: 193 GIIRPSRMTLLLGPPGSGKTTFLKALAGKSEKDLRVNGKITYCGHEFHEFVPQRTSAYIS 252
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
QHDLHHGEMTVRETLDF+GRCLGVGTRY+LL ELSRREK+AGI PDP+IDAFMKA A+ G
Sbjct: 253 QHDLHHGEMTVRETLDFAGRCLGVGTRYDLLVELSRREKEAGIMPDPQIDAFMKATAIDG 312
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
QETSL+TDYVLKILGLDICAD MVGD+MRRGISGGQKKRVTTGEMLVG A +MDEIS
Sbjct: 313 QETSLITDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKAFFMDEISK 372
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
GLDSSTT+QI KF++QMVHI D+TM+++LLQPAPET+DLFDD+I+LSEGQIVYQGPR+NV
Sbjct: 373 GLDSSTTYQIVKFMRQMVHINDITMVISLLQPAPETFDLFDDVIVLSEGQIVYQGPRENV 432
Query: 432 LEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 491
LEFFE+MGF+CPERK +ADFL EVTSKKDQEQYWFRK++PY YI V +F E F SF +G+
Sbjct: 433 LEFFEYMGFRCPERKAIADFLLEVTSKKDQEQYWFRKSRPYVYISVPEFSESFNSFQIGE 492
Query: 492 QIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF 551
QI +L +PYDK H A+LVK KYGIS WELF++CF REWLLMKR+SF+YIFKT Q+T
Sbjct: 493 QIIEELTIPYDKYSVHRAALVKNKYGISSWELFKSCFTREWLLMKRSSFLYIFKTTQITI 552
Query: 552 MSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDH 611
M+ I +TV+ RT+M G + ++++GALFFSL+N+MFNG E AMTV RLP+F+KQR+
Sbjct: 553 MATIALTVFLRTQMKAGTVKDSAKFWGALFFSLINVMFNGMQELAMTVFRLPVFFKQRNS 612
Query: 612 LFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLP 671
LFYP+WAFALPIW+L+IPIS+++S IW+ LTYYTIG+ PAASRFFKQ LAF +H M+L
Sbjct: 613 LFYPAWAFALPIWVLKIPISLVESAIWIILTYYTIGFAPAASRFFKQLLAFIGVHQMALS 672
Query: 672 LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731
L+R +AA GRT+V++NTLGTF LL++ LGGF+++KDDI+ ++ WGYY+SPMMYGQ ++
Sbjct: 673 LFRFIAAAGRTQVVANTLGTFTLLMVFILGGFIVSKDDIQDWMIWGYYLSPMMYGQNAIA 732
Query: 732 VNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIA 791
+NEFL RW A +QPT+GK LL RG T +WYWI +GAL G+S LFN LFIA
Sbjct: 733 INEFLDDRWSAPTNG---SQPTVGKTLLHARGLFTTESWYWISIGALFGFSLLFNVLFIA 789
Query: 792 ALAYLNPIGDSNSTVIEEDGEKQRASGHEAE---GMQMA-VRSSSKT---VGAAQNVTNR 844
AL +LNPIGD+ + + E+G+K E +QMA RS + T + N + +
Sbjct: 790 ALTFLNPIGDTKAVKV-ENGDKNNRRPQETAIVGDIQMAPTRSQANTSSVIPFPNNESRK 848
Query: 845 GMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGA 904
GMILPFQPLSL F++++Y+VDMPAEMKT+GV E+RLQLL SG FRPG+LTAL+GVSGA
Sbjct: 849 GMILPFQPLSLAFNHVNYYVDMPAEMKTQGVEEERLQLLRDASGAFRPGILTALVGVSGA 908
Query: 905 GKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
GKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFARVSGYCEQNDIHSPYVTVYESLLYS
Sbjct: 909 GKTTLMDVLAGRKTGGYIEGSINISGYPKNQTTFARVSGYCEQNDIHSPYVTVYESLLYS 968
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
AWLRL+SDV T+ RKMFV+EVMELVELK L +++VGLPGV GLSTEQRKRLT AVELVAN
Sbjct: 969 AWLRLASDVKTETRKMFVEEVMELVELKLLRNALVGLPGVDGLSTEQRKRLTTAVELVAN 1028
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
PSIIFMDEPTSGLDARAAAIVMRTVR TVDTGRTVVCTIHQPSIDIFEAFDELLL+K GG
Sbjct: 1029 PSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELLLMKIGG 1088
Query: 1085 RVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYAD 1144
+VIYAGPLGH SHKL+EYFE +PGVPKI+E+ NPATWML+VS+ S+E QL +DFAEVYA+
Sbjct: 1089 QVIYAGPLGHRSHKLVEYFETIPGVPKIRESDNPATWMLDVSSSSMEAQLVVDFAEVYAN 1148
Query: 1145 SSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRF 1204
S+L+QRN+ LIKELSTP S DLYFPT+YSQ F+TQ +ACFWKQ+WSYWRN QYNAIRF
Sbjct: 1149 SNLYQRNQLLIKELSTPATCSKDLYFPTQYSQSFITQCKACFWKQHWSYWRNSQYNAIRF 1208
Query: 1205 GMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVY 1264
MT++I I FG+I+W+KG + +QQDL NL GA Y+ +FLG +NA +V V+ +ERTV+
Sbjct: 1209 FMTVIIGILFGVIFWNKGNQIHRQQDLLNLLGATYAAVMFLGATNASAVQSVVAIERTVF 1268
Query: 1265 YRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWAS 1324
YRERAAGM++ +PYA AQVA+E IYV++Q+ VY L+L++MIG++W KF F+YF++
Sbjct: 1269 YRERAAGMYSELPYAFAQVAIETIYVAIQTFVYSLLLFSMIGYQWTAVKFFYFYYFIFMC 1328
Query: 1325 FIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
F F++YGMM+VALTPG Q+A IV+SFFLS WNLFSGFL+ R
Sbjct: 1329 FTYFSMYGMMVVALTPGYQIAAIVMSFFLSFWNLFSGFLIPR 1370
|
May be a general defense protein. Nicotiana plumbaginifolia (taxid: 4092) |
| >sp|Q76CU2|PDR1_TOBAC Pleiotropic drug resistance protein 1 OS=Nicotiana tabacum GN=PDR1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1776 bits (4600), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 849/1345 (63%), Positives = 1054/1345 (78%), Gaps = 14/1345 (1%)
Query: 24 GSRRSWASASIREVW-NAPDNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLE 81
GS R A+ +W N +FSRS R +DDEE L+WAA+E+LPT+DRL+KG+L
Sbjct: 16 GSTRGSLRANSNSIWRNNGVEIFSRSSRDEDDEEALKWAALEKLPTFDRLRKGLLF---- 71
Query: 82 DGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYD 141
+ EVD+++L Q++K LLE ++K+ +EDNEKFL ++++R DRVGI++P IEVRY+
Sbjct: 72 GSQGAAAEVDINDLGFQERKNLLERLVKVADEDNEKFLLKLKNRIDRVGIDLPTIEVRYE 131
Query: 142 HLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTL 201
HL+++ D +VG+R+LPT +N N +E+ L LH++ S+KR + ILKD+SGI+KP RMTL
Sbjct: 132 HLNIDADAYVGSRSLPTFMNFMTNFVETLLNSLHILSSRKRQLTILKDISGIIKPCRMTL 191
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261
LLGPP +GKTTL+LALAGKL L+ +GK++Y GHEL+EFVPQRT AYISQHDLH GEMT
Sbjct: 192 LLGPPSSGKTTLLLALAGKLDPALKVTGKVSYNGHELHEFVPQRTAAYISQHDLHIGEMT 251
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
VRETL+FS RC GVG+R+E+LAELSRREK A IKPD +ID +MKA A GQE ++VTDYV
Sbjct: 252 VRETLEFSARCQGVGSRFEMLAELSRREKAANIKPDADIDIYMKAAATEGQEANVVTDYV 311
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
LKILGLDICADTMVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSSTT+ I
Sbjct: 312 LKILGLDICADTMVGDDMIRGISGGQKKRVTTGEMLVGPSKALFMDEISTGLDSSTTYSI 371
Query: 382 CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFK 441
L+Q V IL T +++LLQPAPETY+LFDDIILLS+G IVYQGPRD+VLEFFE MGFK
Sbjct: 372 VNSLRQSVQILKGTAVISLLQPAPETYNLFDDIILLSDGYIVYQGPRDDVLEFFESMGFK 431
Query: 442 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPY 501
CP+RKGVADFLQEVTSKKDQ+QYW ++N+PYR+I +F E ++SFH+G+++ +L P+
Sbjct: 432 CPQRKGVADFLQEVTSKKDQQQYWSKRNEPYRFITSKEFAEAYQSFHVGRKLGDELATPF 491
Query: 502 DKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYF 561
DK++ HPA+L EKYGI K EL + C RE LLMKRNSFVY+FK QLT M+LI MT++F
Sbjct: 492 DKTKCHPAALTNEKYGIGKKELLKVCTERELLLMKRNSFVYMFKFSQLTIMALITMTLFF 551
Query: 562 RTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFAL 621
RTEM + G Y GALFF ++ IMFNG +E AMT+ +LP+FYKQRD LF+PSWA+A+
Sbjct: 552 RTEMPRDTTDDGGIYAGALFFVVIMIMFNGMSELAMTIFKLPVFYKQRDLLFFPSWAYAI 611
Query: 622 PIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681
P W+L+IP+++++ +WV LTYY IG+DP +RF KQFL ++ M+ ++R + AVGR
Sbjct: 612 PSWILKIPVTLVEVGLWVILTYYVIGFDPNITRFLKQFLLLIVVNQMASGMFRFIGAVGR 671
Query: 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
T +++T G+F LL+ +LGGFV+++DD++ + WGY+ISPMMY S+LVNEF G +W+
Sbjct: 672 TMGVASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWN 731
Query: 742 AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGD 801
+ P N+ T+G ++K RGF E+ WYWIGVGAL G++ +FNF + ALAYLNP D
Sbjct: 732 --HIVPGGNE-TLGSTVVKSRGFFPEAYWYWIGVGALVGFTVVFNFCYSLALAYLNPF-D 787
Query: 802 SNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMS 861
V+ EDGE A E Q+ ++ +QN +GM+LPF+P S+TFD++
Sbjct: 788 KPQAVLPEDGEN--AENGEVSS-QITSTDGGDSISESQN-NKKGMVLPFEPHSITFDDVV 843
Query: 862 YFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 921
Y VDMP EMK +G GEDRL LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY
Sbjct: 844 YSVDMPQEMKEQGAGEDRLVLLKGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 903
Query: 922 IEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMF 981
I+G+IKISGYPK QETFAR+SGYCEQNDIHSPYVTVYESL+YSAWLRL DVD K RKMF
Sbjct: 904 IDGEIKISGYPKKQETFARISGYCEQNDIHSPYVTVYESLVYSAWLRLPQDVDEKTRKMF 963
Query: 982 VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
VDEVMELVEL L ++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA
Sbjct: 964 VDEVMELVELGPLRSALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1023
Query: 1042 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIE 1101
AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG+ IY GPLG S LI+
Sbjct: 1024 AAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIK 1083
Query: 1102 YFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTP 1161
YFE+ PGV KIKE YNPATWMLEV+ + E LGIDF EVY +S L++RNK LI EL P
Sbjct: 1084 YFESNPGVAKIKEGYNPATWMLEVTASAQEMMLGIDFTEVYKNSDLYRRNKALISELGVP 1143
Query: 1162 PPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDK 1221
PGS DL+F T+YSQ F TQ AC WKQ+WSYWRNP Y A+RF T IA+ FG ++WD
Sbjct: 1144 RPGSKDLHFETQYSQSFWTQCVACLWKQHWSYWRNPAYTAVRFIFTTFIALIFGTMFWDL 1203
Query: 1222 GQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALA 1281
G K SK QDL N G+MY+ +FLG NA SV PV+ +ERTV+YRERAAGM++A+PYA
Sbjct: 1204 GTKVSKSQDLLNAMGSMYAAVLFLGVQNASSVQPVVAIERTVFYRERAAGMYSAIPYAFG 1263
Query: 1282 QVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPG 1341
QV++EI Y+ VQSV Y +I+YAMIGF+W++GKF + + M+ + + FT YGMM VA+TP
Sbjct: 1264 QVSIEIPYIFVQSVFYGIIVYAMIGFEWDVGKFFWYLFIMFFTLLYFTFYGMMGVAVTPN 1323
Query: 1342 QQVATIVLSFFLSVWNLFSGFLVAR 1366
Q VA+IV +FF VWNLFSGF++ R
Sbjct: 1324 QNVASIVAAFFYGVWNLFSGFIIPR 1348
|
May be a general defense protein. Nicotiana tabacum (taxid: 4097) |
| >sp|Q8GU89|PDR4_ORYSJ Pleiotropic drug resistance protein 4 OS=Oryza sativa subsp. japonica GN=PDR4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1741 bits (4508), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 820/1359 (60%), Positives = 1055/1359 (77%), Gaps = 28/1359 (2%)
Query: 32 ASIRE---VWNAPDNVFSRS-----ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDG 83
AS+R +W + +VFSRS + DDEE LRWAA+ERLPTYDR+++G+L EDG
Sbjct: 9 ASLRREGSMWRSGGDVFSRSSSRFQDEDDDEEALRWAALERLPTYDRVRRGILAVSSEDG 68
Query: 84 KV--VKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYD 141
K EVDV L ++ + L+E +++ ++D+E+FL ++R R DRVGI+ P IEVR++
Sbjct: 69 GAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFLLKLRERMDRVGIDYPTIEVRFE 128
Query: 142 HLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTL 201
+L VE DVHVG R LPTLLN N +E+ LH++P+KK+ + +L DVSGI+KP RMTL
Sbjct: 129 NLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHILPNKKQPMTVLHDVSGIIKPRRMTL 188
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261
LLGPPG+GKTTL+LALAGKL KDL+ SGK+TY GH ++EFVP+RT AYISQHDLH GEMT
Sbjct: 189 LLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNGHGMHEFVPERTAAYISQHDLHIGEMT 248
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
VRETL FS RC GVGTRYE+L EL+RREK A IKPD +ID +MKA A+ GQE+S+VTDY+
Sbjct: 249 VRETLAFSARCQGVGTRYEMLTELARREKAANIKPDHDIDIYMKASAMGGQESSVVTDYI 308
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
LKILGLDICADT+VG+EM RGISGGQ+KRVTTGEMLVG A L+MDEISTGLDSSTT+QI
Sbjct: 309 LKILGLDICADTVVGNEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTYQI 368
Query: 382 CKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFK 441
L+Q +HIL T +++LLQPAPETY+LFDDIILLS+GQ+VYQGPR++VLEFFE MGF+
Sbjct: 369 VNSLRQTIHILGGTAVISLLQPAPETYNLFDDIILLSDGQVVYQGPREHVLEFFEFMGFR 428
Query: 442 CPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPY 501
CP RKGVADFLQEVTS+KDQ QYW R+++PYR++PV F + F+SFH+G+ I ++L P+
Sbjct: 429 CPARKGVADFLQEVTSRKDQGQYWCRRDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPF 488
Query: 502 DKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYF 561
D++++HPA+L KYG+S+ EL +A RE LLMKRN+F+YIFK LT M+LI MT +F
Sbjct: 489 DRTRSHPAALATSKYGVSRKELLKATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFF 548
Query: 562 RTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFAL 621
RT M D + G Y GAL+F+L +MFNGFAE AMTV++LP+F+KQRD LF+P+WA+ +
Sbjct: 549 RTSMR-HDRDYGMIYLGALYFALDTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTI 607
Query: 622 PIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681
P W+L+IPI+ L+ ++V +TYY IG+DP+ SRFFKQ+L +++ MS L+R +A +GR
Sbjct: 608 PSWILQIPITFLEVGVYVFITYYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGR 667
Query: 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWD 741
V+S+T G LL +LGGF++A+ D++ + WGY+ISP+ Y Q ++ NEFLG W
Sbjct: 668 DMVVSHTFGPLSLLAFAALGGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 742 AQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGD 801
++ T+G +LK RG TE+ WYWIG+GAL GY+ LFN L+ AL+ L+P D
Sbjct: 728 QILPGENV---TLGVSVLKSRGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTD 784
Query: 802 SNSTVIEE--------------DGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMI 847
S++++ E+ +G+K S + + +S A + + +GM+
Sbjct: 785 SHASMSEDALKEKHANLTGEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMV 844
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
LPF PLS++F+++ Y VDMP MK +G+ EDRL LL VSG FRPGVLTALMGVSGAGKT
Sbjct: 845 LPFAPLSISFNDVRYSVDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKT 904
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967
TLMDVLAGRKTGGYIEGDI+ISGYPK QETFAR+SGYCEQNDIHSP+VTVYESL++SAWL
Sbjct: 905 TLMDVLAGRKTGGYIEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWL 964
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027
RL S+VD++ RKMF++EVM+LVEL SL ++VGLPGVSGLSTEQRKRLTIAVELVANPSI
Sbjct: 965 RLPSEVDSEARKMFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSI 1024
Query: 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
IFMDEPTSGLDARAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGG I
Sbjct: 1025 IFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEI 1084
Query: 1088 YAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSL 1147
Y GP+G S KLIEYFE + GV +IK+ YNPATWMLEV++ + E LG+DF+E+Y S L
Sbjct: 1085 YVGPVGQNSSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSEL 1144
Query: 1148 HQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMT 1207
+QRNKELI+ELSTPPPGS+DL FPT+YS+ F+TQ AC WKQ WSYWRNP Y A+R T
Sbjct: 1145 YQRNKELIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFT 1204
Query: 1208 LVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRE 1267
+VIA+ FG ++W+ G +T KQQDL N G+MY+ +++G N+ SV PV+ VERTV+YRE
Sbjct: 1205 IVIALMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRE 1264
Query: 1268 RAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFII 1327
RAAGM++A PYA QVA+E+ Y+ VQ+++Y +++Y+MIGF+W + KF + +FM+ + +
Sbjct: 1265 RAAGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLY 1324
Query: 1328 FTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
FT YGMM V LTP + +A I+ S F +VWNLFSG+L+ R
Sbjct: 1325 FTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPR 1363
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GU88|PDR7_ORYSJ Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1724 bits (4465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1370 (61%), Positives = 1054/1370 (76%), Gaps = 25/1370 (1%)
Query: 8 DLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQ-DDEEELRWAAIERLP 66
D+ R SV G + SW S R + F RS R+ DDEE L+WAAIE+LP
Sbjct: 2 DIVRMGSVASGGGSVRRTASSWRGTSGRS------DAFGRSVREEDDEEALKWAAIEKLP 55
Query: 67 TYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRT 126
TYDR++KG+L G V EVD+ L +Q+++ L+E +++ EEDNE+FL ++R R
Sbjct: 56 TYDRMRKGILTA----GGV--EEVDIGGLGLQERRNLIERLVRTAEEDNERFLLKLRDRM 109
Query: 127 DRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRI 186
+RVGI+ P IEVR+++LS++ + +VG R +PT N N + L + +V S KR + I
Sbjct: 110 ERVGIDNPTIEVRFENLSIDAEAYVGNRGIPTFTNFFSNKIMDVLSAMRIVSSGKRPISI 169
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+SGI++P RM+LLLGPPG+GKT+L+LALAGKL L+ SG++TY GH+++EFVPQRT
Sbjct: 170 LHDISGIIRPGRMSLLLGPPGSGKTSLLLALAGKLDSTLKVSGRVTYNGHDMDEFVPQRT 229
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
AYI QHDLH GEMTVRETL FS RC GVGTRY++L ELSRREK+A IKPDP+ID +MKA
Sbjct: 230 SAYIGQHDLHIGEMTVRETLAFSARCQGVGTRYDMLTELSRREKEASIKPDPDIDVYMKA 289
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
++V GQE S+VTDY+LKILGL+ICADTMVGD M RGISGGQKKRVTTGEMLVG A L+M
Sbjct: 290 ISVEGQE-SVVTDYILKILGLEICADTMVGDAMIRGISGGQKKRVTTGEMLVGPAKALFM 348
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
DEISTGLDSSTT+QI L+Q VHIL T ++ALLQPAPETYDLFDDI+LLSEGQIVYQG
Sbjct: 349 DEISTGLDSSTTYQIVNSLRQSVHILGGTALIALLQPAPETYDLFDDIVLLSEGQIVYQG 408
Query: 427 PRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKS 486
PR+N+LEFFE MGFKCPERKGVADFLQEVTS+KDQ QYW R+++PYRYI V+DF E FK
Sbjct: 409 PRENILEFFEAMGFKCPERKGVADFLQEVTSRKDQHQYWCRRDEPYRYISVNDFSEAFKE 468
Query: 487 FHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKT 546
FH+G+ + S+LRVP+D+++ HPA+L +YGISK EL +ACF+REWLLMKRNSFVYIFK
Sbjct: 469 FHVGRNLGSELRVPFDRTRNHPAALTTSRYGISKMELTKACFSREWLLMKRNSFVYIFKI 528
Query: 547 FQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFY 606
QL + I MTV+ RT+M + G+ + GA+F L+ +FNGFAE AM++ +LPIFY
Sbjct: 529 LQLIILGSIGMTVFLRTKMHRRSVEDGAIFLGAMFLGLVTHLFNGFAELAMSIAKLPIFY 588
Query: 607 KQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIH 666
KQRD LFYPSWA+ALP W+L+IPIS L+ +W+ +TYY +G+DP RFF+ ++ I
Sbjct: 589 KQRDLLFYPSWAYALPTWVLKIPISFLECAVWICMTYYVMGFDPNIERFFRHYVLLVLIS 648
Query: 667 NMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYG 726
M+ L+RL+AA+GR V+++T G+F LI++ LGGF++++++I+ + WGY+ SP+MY
Sbjct: 649 QMASGLFRLLAALGREMVVADTFGSFAQLILLVLGGFLISRENIKKWWIWGYWSSPLMYA 708
Query: 727 QTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFN 786
Q ++ VNEFLG W+ + DP+ + T+G +LK+RG ++NWYWIGVGAL GY LFN
Sbjct: 709 QNAIAVNEFLGHSWN-KVVDPTQSNDTLGVQVLKVRGIFVDANWYWIGVGALLGYIMLFN 767
Query: 787 FLFIAALAYLNPIGDSNSTVIEEDGEKQRA--SGHEAEGMQMAVRSSSKTVGA------- 837
LFI L +L+P+G + V EE+ ++ +G E + + S + A
Sbjct: 768 ILFILFLEWLDPLGKGQAVVSEEELREKHVNRTGENVELLTLGTDSQNSPSDANAGRGEI 827
Query: 838 -AQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896
+ RGM+LPF PLS+TFDN+ Y VDMP EMK +GV EDRL LL VSG FRPGVLT
Sbjct: 828 TGADTRKRGMVLPFTPLSITFDNIRYSVDMPQEMKDKGVTEDRLLLLKGVSGAFRPGVLT 887
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956
ALMGVSGAGKTTLMDVLAGRKTGGYIEGDI ISGYPK QETFAR++GYCEQNDIHSP+VT
Sbjct: 888 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDISISGYPKKQETFARIAGYCEQNDIHSPHVT 947
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
VYESLLYSAWLRL S+VD++ RKMFV+EVMELVEL SL ++VGLPGV+GLSTEQRKRLT
Sbjct: 948 VYESLLYSAWLRLPSEVDSEARKMFVEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLT 1007
Query: 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076
IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE
Sbjct: 1008 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1067
Query: 1077 LLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGI 1136
L L+KRGG IY GPLGH S LI YFE + GV KIK+ YNPATWMLEV+ ++ E+ LGI
Sbjct: 1068 LFLMKRGGEEIYVGPLGHNSCHLINYFEGIQGVRKIKDGYNPATWMLEVTTLAQEDILGI 1127
Query: 1137 DFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRN 1196
+FAEVY +S L+QRNK LI ELSTPPPGS+DL+FPT++SQPF TQ AC WKQ+ SYWRN
Sbjct: 1128 NFAEVYRNSDLYQRNKTLISELSTPPPGSTDLHFPTQFSQPFFTQCMACLWKQHKSYWRN 1187
Query: 1197 PQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPV 1256
P Y A R T VIA+ FG I+ + G+K +K+ DL N G+MY+ +F+G N +V P+
Sbjct: 1188 PSYTATRIFFTTVIALIFGTIFLNLGKKINKRLDLFNSLGSMYAAVLFIGIQNGQTVQPI 1247
Query: 1257 ICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCL 1316
+ VERTV+YRE+AAGM++A+PYA AQV +EI ++ +Q+VVY LI+Y++IGF W + KF
Sbjct: 1248 VDVERTVFYREKAAGMYSALPYAFAQVLIEIPHIFLQTVVYGLIVYSLIGFDWTVEKFFW 1307
Query: 1317 FFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
+ +FM+ +F+ FT YGMM VA+TP +A IV + F +WN+F+GFL+ R
Sbjct: 1308 YMFFMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPR 1357
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q9M9E1|AB40G_ARATH ABC transporter G family member 40 OS=Arabidopsis thaliana GN=ABCG40 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1723 bits (4462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1349 (60%), Positives = 1036/1349 (76%), Gaps = 21/1349 (1%)
Query: 24 GSRRSWASASIRE---VW--NAPDNVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLN 77
G+ AS S+R VW ++ +FSRS R+ DDEE LRWAA+E+LPT+DRL+KG+L
Sbjct: 3 GTSFHQASNSMRRNSSVWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILT 62
Query: 78 QVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIE 137
G + +E+D+ L QD K+LLE ++K+ ++++EK L +++ R DRVGI++P IE
Sbjct: 63 ASHAGGPI--NEIDIQKLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIE 120
Query: 138 VRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPS 197
VR+DHL VE +VHVG RALPT +N N + L LHLVP++K+ IL DVSGIVKP
Sbjct: 121 VRFDHLKVEAEVHVGGRALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPG 180
Query: 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257
RM LLLGPP +GKTTL+LALAGKL ++L+ +G++TY GH +NEFVPQRT AYI Q+D+H
Sbjct: 181 RMALLLGPPSSGKTTLLLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHI 240
Query: 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
GEMTVRET ++ R GVG+RY++L EL+RREK+A IKPDP+ID FMKA++ AG++T+++
Sbjct: 241 GEMTVRETFAYAARFQGVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVM 300
Query: 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
TDY+LKILGL++CADTMVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSST
Sbjct: 301 TDYILKILGLEVCADTMVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSST 360
Query: 378 TFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+QI L+ VHI + T +++LLQPAPET++LFDDIIL++EG+I+Y+GPRD+V+EFFE
Sbjct: 361 TYQIVNSLRNYVHIFNGTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFET 420
Query: 438 MGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDL 497
MGFKCP RKGVADFLQEVTSKKDQ QYW R+++PYR+I V +F E F+SFH+G++I +L
Sbjct: 421 MGFKCPPRKGVADFLQEVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDEL 480
Query: 498 RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICM 557
+P+DK+++HPA+L +KYG+ EL + F+RE+LLMKRNSFVY FK QL M+ + M
Sbjct: 481 ALPFDKTKSHPAALTTKKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTM 540
Query: 558 TVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSW 617
T++FRTEM GS Y GALFF L+ +MFNG +E +MT+ +LP+FYKQRD LFYP+W
Sbjct: 541 TLFFRTEMQKKTEVDGSLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAW 600
Query: 618 AFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVA 677
++LP WLL+IPIS +++ + +TYY IG+DP R FKQ++ ++ M+ L+++VA
Sbjct: 601 VYSLPPWLLKIPISFMEAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVA 660
Query: 678 AVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLG 737
A+GR +++NT G F +L+ +LGG V+++DDI+ + WGY+ISP+MYGQ ++L NEF G
Sbjct: 661 ALGRNMIVANTFGAFAMLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFG 720
Query: 738 GRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797
W ++ S T+G LK RGF + WYWIG GAL G+ LFNF F AL +LN
Sbjct: 721 HSWSRAVENSS---ETLGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLN 777
Query: 798 PIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTF 857
+G + + EE + ++ S V A N RGM+LPF+P S+TF
Sbjct: 778 SLGKPQAVIAEEPASDE---------TELQSARSEGVVEAGAN-KKRGMVLPFEPHSITF 827
Query: 858 DNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917
DN+ Y VDMP EM +G EDRL LL V+G FRPGVLTALMGVSGAGKTTLMDVLAGRK
Sbjct: 828 DNVVYSVDMPQEMIEQGTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRK 887
Query: 918 TGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKK 977
TGGYI+G+I ISGYPKNQ+TFAR+SGYCEQ DIHSP+VTVYESL+YSAWLRL +VD K
Sbjct: 888 TGGYIDGNITISGYPKNQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNK 947
Query: 978 RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
RK+F++EVMELVEL L ++VGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL
Sbjct: 948 RKIFIEEVMELVELTPLRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1007
Query: 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESH 1097
DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL LLKRGG IY GPLGHES
Sbjct: 1008 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHEST 1067
Query: 1098 KLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKE 1157
LI YFE++ G+ KI E YNPATWMLEVS S E LG+DFA+VY +S L++RNKELIKE
Sbjct: 1068 HLINYFESIQGINKITEGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKE 1127
Query: 1158 LSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLI 1217
LS P PGS DLYFPT+YSQ FLTQ A WKQ+WSYWRNP Y A+RF T+ IA+ FG +
Sbjct: 1128 LSQPAPGSKDLYFPTQYSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTM 1187
Query: 1218 YWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMP 1277
+WD G KT +QDL N G+MY+ +FLG NA SV PV+ VERTV+YRE+AAGM++AMP
Sbjct: 1188 FWDLGGKTKTRQDLSNAMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMP 1247
Query: 1278 YALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVA 1337
YA AQV +EI YV VQ++VY LI+YAMIGF+W KF + +FM+ SF+ FT YGMM VA
Sbjct: 1248 YAFAQVFIEIPYVLVQAIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVA 1307
Query: 1338 LTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
+TP +A++V S F +WNLFSGFL+ R
Sbjct: 1308 MTPNHHIASVVSSAFYGIWNLFSGFLIPR 1336
|
May be a general defense protein (By similarity). Functions as a pump to exclude Pb(2+) ions and/or Pb(2+)-containing toxic compounds from the cytoplasm. Contributes to Pb(2+) ions resistance. Confers some resistance to the terpene sclareol. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0JLC5|PDR3_ORYSJ Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1722 bits (4460), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 837/1347 (62%), Positives = 1033/1347 (76%), Gaps = 18/1347 (1%)
Query: 37 VWNAPDNVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGML---NQVLEDGKVVKHEVDV 92
+W D+VFSRS R+ DDEE LRWAA+E+LPTYDR+++ +L K VDV
Sbjct: 26 MWRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDV 85
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
L ++++ LLE ++++ +EDNEKFL +++ R DRVGI++P IEVR++HL E +V VG
Sbjct: 86 HGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVG 145
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
LPT+LN N LE A L ++P++K+++ +L DVSGI+KP RMTLLLGPPG+GKTT
Sbjct: 146 NSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTT 205
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAG+LGKDL+ASGK+TY GH + EFVP+RT AYISQHDLH GEMTVRETL FS RC
Sbjct: 206 LLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARC 265
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVG+R+++L ELSRREK A IKPD +IDAFMKA A+ GQE ++ TDY+LKILGL+ICAD
Sbjct: 266 QGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICAD 325
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
TMVGDEM RGISGGQ+KRVTTGEMLVG A L+MDEISTGLDSSTTFQI L+Q VHIL
Sbjct: 326 TMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHIL 385
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
T +++LLQPAPETY+LFDDIILLS+GQIVYQGPR++VLEFFE MGFKCP+RKGVADFL
Sbjct: 386 GGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESMGFKCPDRKGVADFL 445
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQ QYW R ++PYR++ V +FV F+SFH G+ IA++L VP+DKS++HPA+L
Sbjct: 446 QEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALA 505
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+YG EL +A RE LLMKRNSFVY+F+TFQL +SLI MT++FRT+M +
Sbjct: 506 TTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTS 565
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
G Y GALFF +L IMFNGF+E A+TV +LP+F+KQRD LFYP+W++ +P W+L+IPI+
Sbjct: 566 GGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITF 625
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
++ +V LTYY IG+D FFKQ+L +I+ M+ L+R + R +++N +F
Sbjct: 626 IEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASF 685
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+LLI M LGGF++A++ ++ + WGY+ISPMMY Q ++ VNE +G W+ + N+
Sbjct: 686 MLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNE- 744
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGE 812
T+G +LK RG E+ WYWIG GA+ G++ LFN LF AL YL P G+S +V EE+ +
Sbjct: 745 TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELK 804
Query: 813 KQRA-------------SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDN 859
++RA SG M + S V VT RGM+LPF PLSL+FDN
Sbjct: 805 EKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDN 864
Query: 860 MSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
+ Y VDMP EMK +GV +DRL+LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 865 VRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 924
Query: 920 GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK 979
GYIEG I ISGYPK QETFARVSGYCEQNDIHSP VTVYESLL+SAWLRL DVD+ RK
Sbjct: 925 GYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRK 984
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
MF++EVMELVELKSL D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 985 MFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1044
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKL 1099
RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGG IYAGPLGH S +L
Sbjct: 1045 RAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSEL 1104
Query: 1100 IEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELS 1159
I+YFE++PGV KIK+ YNPATWMLEV+ I E LG+DF+++Y S L+QRNK LIK+LS
Sbjct: 1105 IKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLS 1164
Query: 1160 TPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 1219
P P SSDLYFPT+YSQ LTQ AC WKQ SYWRNP YNA+RF T VIA+ FG I+W
Sbjct: 1165 QPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFW 1224
Query: 1220 DKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYA 1279
D G K +K QDL N G+MY+ +F+G N SV PV+ VERTV+YRERAAGM++A PYA
Sbjct: 1225 DLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYA 1284
Query: 1280 LAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALT 1339
QV +EI Y VQ+ VY +I+YAMIGF+W KF + +FM + + FT YGMM V LT
Sbjct: 1285 FGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLT 1344
Query: 1340 PGQQVATIVLSFFLSVWNLFSGFLVAR 1366
P +A+IV S F ++WNLFSGF++ R
Sbjct: 1345 PNYHIASIVSSAFYAIWNLFSGFVIPR 1371
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|A2WSH0|PDR3_ORYSI Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 1720 bits (4454), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1347 (62%), Positives = 1032/1347 (76%), Gaps = 18/1347 (1%)
Query: 37 VWNAPDNVFSRSERQ-DDEEELRWAAIERLPTYDRLKKGML---NQVLEDGKVVKHEVDV 92
+W D+VFSRS R+ DDEE LRWAA+E+LPTYDR+++ +L K VDV
Sbjct: 26 MWRRGDDVFSRSSREEDDEEALRWAALEKLPTYDRVRRAILPLGGDDGAGDGGGKGVVDV 85
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
L ++++ LLE ++++ +EDNEKFL +++ R DRVGI++P IEVR++HL E +V VG
Sbjct: 86 HGLGPRERRALLERLVRVADEDNEKFLLKLKDRVDRVGIDMPTIEVRFEHLEAEAEVRVG 145
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
LPT+LN N LE A L ++P++K+++ +L DVSGI+KP RMTLLLGPPG+GKTT
Sbjct: 146 NSGLPTVLNSITNTLEEAGNALGILPNRKQTMPVLHDVSGIIKPRRMTLLLGPPGSGKTT 205
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAG+LGKDL+ASGK+TY GH + EFVP+RT AYISQHDLH GEMTVRETL FS RC
Sbjct: 206 LLLALAGRLGKDLKASGKVTYNGHGMEEFVPERTAAYISQHDLHIGEMTVRETLAFSARC 265
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVG+R+++L ELSRREK A IKPD +IDAFMKA A+ GQE ++ TDY+LKILGL+ICAD
Sbjct: 266 QGVGSRFDMLTELSRREKAANIKPDADIDAFMKAAAMGGQEANVNTDYILKILGLEICAD 325
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
TMVGDEM RGISGGQ+KRVTTGEMLVG A L+MDEISTGLDSSTTFQI L+Q VHIL
Sbjct: 326 TMVGDEMLRGISGGQRKRVTTGEMLVGPARALFMDEISTGLDSSTTFQIVNSLRQTVHIL 385
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
T +++LLQPAPETY+LFDDIILLS+GQIVYQGPR++VLEFFE GFKCP+RKGVADFL
Sbjct: 386 GGTAVISLLQPAPETYNLFDDIILLSDGQIVYQGPREDVLEFFESTGFKCPDRKGVADFL 445
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQ QYW R ++PYR++ V +FV F+SFH G+ IA++L VP+DKS++HPA+L
Sbjct: 446 QEVTSKKDQRQYWARHDKPYRFVTVKEFVSAFQSFHTGRAIANELAVPFDKSKSHPAALA 505
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+YG EL +A RE LLMKRNSFVY+F+TFQL +SLI MT++FRT+M +
Sbjct: 506 TTRYGAPGKELLKANIDREILLMKRNSFVYMFRTFQLMVVSLIAMTLFFRTKMKRDSVTS 565
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
G Y GALFF +L IMFNGF+E A+TV +LP+F+KQRD LFYP+W++ +P W+L+IPI+
Sbjct: 566 GGIYMGALFFGVLMIMFNGFSELALTVFKLPVFFKQRDLLFYPAWSYTIPSWILKIPITF 625
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
++ +V LTYY IG+D FFKQ+L +I+ M+ L+R + R +++N +F
Sbjct: 626 IEVGGYVFLTYYVIGFDSNVGSFFKQYLLMLAINQMAGSLFRFIGGAARNMIVANVFASF 685
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+LLI M LGGF++A++ ++ + WGY+ISPMMY Q ++ VNE +G W+ + N+
Sbjct: 686 MLLIFMVLGGFILAREQVKKWWIWGYWISPMMYAQNAISVNELMGHSWNKIVNSSASNE- 744
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGE 812
T+G +LK RG E+ WYWIG GA+ G++ LFN LF AL YL P G+S +V EE+ +
Sbjct: 745 TLGVQVLKSRGVFPEARWYWIGFGAMIGFTILFNALFTLALTYLRPYGNSRQSVSEEELK 804
Query: 813 KQRA-------------SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDN 859
++RA SG M + S V VT RGM+LPF PLSL+FDN
Sbjct: 805 EKRANLNGEIVGDVHLSSGSTRRPMGNGTENDSTIVDDDTEVTQRGMVLPFTPLSLSFDN 864
Query: 860 MSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
+ Y VDMP EMK +GV +DRL+LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGRKTG
Sbjct: 865 VRYSVDMPQEMKAQGVADDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 924
Query: 920 GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK 979
GYIEG I ISGYPK QETFARVSGYCEQNDIHSP VTVYESLL+SAWLRL DVD+ RK
Sbjct: 925 GYIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPEDVDSNTRK 984
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
MF++EVMELVELKSL D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA
Sbjct: 985 MFIEEVMELVELKSLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1044
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKL 1099
RAAAIVMRTVRNTV+TGRTVVCTIHQPSIDIFEAFDEL L+KRGG IYAGPLGH S +L
Sbjct: 1045 RAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYAGPLGHHSSEL 1104
Query: 1100 IEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELS 1159
I+YFE++PGV KIK+ YNPATWMLEV+ I E LG+DF+++Y S L+QRNK LIK+LS
Sbjct: 1105 IKYFESIPGVSKIKDGYNPATWMLEVTTIGQEQALGVDFSDIYKKSELYQRNKALIKDLS 1164
Query: 1160 TPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 1219
P P SSDLYFPT+YSQ LTQ AC WKQ SYWRNP YNA+RF T VIA+ FG I+W
Sbjct: 1165 QPAPDSSDLYFPTQYSQSSLTQCMACLWKQNLSYWRNPPYNAVRFFFTTVIALLFGTIFW 1224
Query: 1220 DKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYA 1279
D G K +K QDL N G+MY+ +F+G N SV PV+ VERTV+YRERAAGM++A PYA
Sbjct: 1225 DLGGKVTKSQDLFNAMGSMYAAVLFIGVMNCTSVQPVVAVERTVFYRERAAGMYSAFPYA 1284
Query: 1280 LAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALT 1339
QV +EI Y VQ+ VY +I+YAMIGF+W KF + +FM + + FT YGMM V LT
Sbjct: 1285 FGQVVIEIPYTLVQATVYGIIVYAMIGFEWTAAKFFWYLFFMVFTLLYFTFYGMMAVGLT 1344
Query: 1340 PGQQVATIVLSFFLSVWNLFSGFLVAR 1366
P +A+IV S F ++WNLFSGF++ R
Sbjct: 1345 PNYHIASIVSSAFYAIWNLFSGFVIPR 1371
|
May be a general defense protein. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8GU92|PDR2_ORYSJ Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1716 bits (4444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 844/1350 (62%), Positives = 1044/1350 (77%), Gaps = 22/1350 (1%)
Query: 38 WNAPDNVFSRS-------ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVV---K 87
W+A + VFSRS + +DDEE LRWAA+E+LPTYDR+++ +L V E G K
Sbjct: 30 WSADNGVFSRSRASSSGEDGEDDEEALRWAALEKLPTYDRVRRAVLPVVEEGGGGGEAGK 89
Query: 88 HEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEG 147
VDV +L Q+++ LLE ++++ E+DNE+FL +++ R DRVGI+IP IEVR++HL E
Sbjct: 90 KVVDVLSLGPQERRALLERLVRVAEDDNERFLLKLKERIDRVGIDIPTIEVRFEHLEAEA 149
Query: 148 DVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPG 207
+V VG LPT+LN N LE A L ++P+KK+++ IL DVSGIVKP RMTLLLGPPG
Sbjct: 150 EVRVGNSGLPTVLNSMTNKLEGAANALGILPNKKQTMPILHDVSGIVKPRRMTLLLGPPG 209
Query: 208 AGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267
+GKTTL+LALAG+LGKD++ SG++TY GH++ +FVPQRT AYISQHDLH GEMTVRETL
Sbjct: 210 SGKTTLLLALAGRLGKDIKFSGQVTYNGHQMEDFVPQRTAAYISQHDLHIGEMTVRETLS 269
Query: 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327
FS RC GVG+R+++L ELSRREK A IKPD +IDAFMKA A+ GQET+L+TDY+LKILGL
Sbjct: 270 FSARCQGVGSRFDMLTELSRREKAANIKPDADIDAFMKASAMEGQETNLITDYILKILGL 329
Query: 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ 387
DICADTMVGD+M RGISGGQ+KRVTTGEMLVG AN L+MDEISTGLDSSTTFQI K L+Q
Sbjct: 330 DICADTMVGDDMVRGISGGQRKRVTTGEMLVGPANALFMDEISTGLDSSTTFQIVKSLRQ 389
Query: 388 MVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKG 447
+HIL T +++LLQPAPETYDLFDDIILLS+GQIVYQGPR+ VLEFFE MGFKCPERKG
Sbjct: 390 AIHILGGTAVISLLQPAPETYDLFDDIILLSDGQIVYQGPREGVLEFFELMGFKCPERKG 449
Query: 448 VADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAH 507
VADFLQEVTS+KDQ+QYW + ++PYRY+PV DF F+SFH G+ IA++L P+DKS+ H
Sbjct: 450 VADFLQEVTSRKDQKQYWMQHDKPYRYVPVKDFASAFQSFHTGKSIANELATPFDKSKNH 509
Query: 508 PASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567
PA+L +YG+S EL +A RE+LLMKRNSFVYIF+ QL +S I MTV+FRT+M
Sbjct: 510 PAALTTSRYGVSAMELLKANIDREFLLMKRNSFVYIFRACQLMVVSAIAMTVFFRTKMHR 569
Query: 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLR 627
+ G + GALFFS++ IMFNG +E +T+ +LP+F+KQRD LF+P+W + +P W+L+
Sbjct: 570 DSVTDGVIFMGALFFSVMMIMFNGLSELPLTIFKLPVFFKQRDLLFFPAWTYTIPSWILK 629
Query: 628 IPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISN 687
IP+S ++ +V ++YY IG+DP+A RFFKQ+L +I+ M+ L+R V R +++N
Sbjct: 630 IPMSFIEVGGFVFMSYYVIGFDPSAGRFFKQYLLMLAINQMAAALFRFVGGAARNMIVAN 689
Query: 688 TLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDP 747
G+F+LLI M LGGF++ ++ ++ + WGY+ISPMMY Q ++ VNEFLG WD + +
Sbjct: 690 VFGSFMLLIFMVLGGFILVREKVKKWWIWGYWISPMMYAQNAISVNEFLGHSWD-KVLNN 748
Query: 748 SINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807
S++ T+G L+ RG E+ WYWIG GAL G+ LFN LF AL YL P G S +V
Sbjct: 749 SLSNETLGVQALRSRGVFPEAKWYWIGFGALLGFIMLFNGLFTLALTYLKPYGKSQPSVS 808
Query: 808 EEDGEKQRASGHE--------AEGMQMAVRSSSKT---VGAAQNVTNRGMILPFQPLSLT 856
EE+ ++++A+ + A +A+ +++T + T RGM+LPF PLSLT
Sbjct: 809 EEELKEKQANINGNVLDVDTMASSTNLAIVDNTETSSEIADNSQPTQRGMVLPFAPLSLT 868
Query: 857 FDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916
FDN+ Y VDMP EMK G+ EDRL+LL VSG FRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 869 FDNIKYSVDMPQEMKAHGIVEDRLELLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGR 928
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
KTGGYIEG+I ISGYPK QETFARVSGYCEQNDIHSP VTV ESLL+SAWLRL DVD+
Sbjct: 929 KTGGYIEGNITISGYPKKQETFARVSGYCEQNDIHSPQVTVSESLLFSAWLRLPKDVDSN 988
Query: 977 KRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
RKMF++EVMELVELK L D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 989 TRKMFIEEVMELVELKPLRDALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 1096
LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL L+KRGG IY GPLGH+S
Sbjct: 1049 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGHQS 1108
Query: 1097 HKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIK 1156
+LI+YFE + GV +IK+ YNPATWMLEVS IS E LG+DF ++Y S L QRNK LI+
Sbjct: 1109 SELIKYFEGIKGVSRIKDGYNPATWMLEVSTISQEQALGVDFCDIYRKSELFQRNKALIQ 1168
Query: 1157 ELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGL 1216
ELSTPPPGSS+LYFPTKYS FL Q AC WK + SYWRNP YNAIR T VIA+ FG
Sbjct: 1169 ELSTPPPGSSELYFPTKYSLSFLNQCLACLWKMHLSYWRNPPYNAIRLFFTTVIALLFGT 1228
Query: 1217 IYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAM 1276
I+WD G KT K QDL N G+MYS +F+G N+ SV PV+ VERTV+YRERAAGM++A
Sbjct: 1229 IFWDLGGKTGKSQDLFNAMGSMYSAVLFIGVLNSQSVQPVVSVERTVFYRERAAGMYSAF 1288
Query: 1277 PYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIV 1336
PYA QVA+E Y VQS++Y +I+Y+MIGFKW KF + +FM+ +F+ FT YGMM V
Sbjct: 1289 PYAFGQVAIEFPYTLVQSIIYGIIVYSMIGFKWTAAKFFWYLFFMFFTFLYFTFYGMMAV 1348
Query: 1337 ALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
LTP VA+IV S F +WNLFSGF++ R
Sbjct: 1349 GLTPSYHVASIVSSAFYGIWNLFSGFIIPR 1378
|
May be a general defense protein. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1389 | ||||||
| 359481989 | 1434 | PREDICTED: pleiotropic drug resistance p | 0.948 | 0.919 | 0.749 | 0.0 | |
| 224069796 | 1463 | predicted protein [Populus trichocarpa] | 0.963 | 0.914 | 0.737 | 0.0 | |
| 356572530 | 1437 | PREDICTED: ABC transporter G family memb | 0.966 | 0.934 | 0.710 | 0.0 | |
| 147794195 | 1456 | hypothetical protein VITISV_025837 [Viti | 0.944 | 0.901 | 0.719 | 0.0 | |
| 359486907 | 1449 | PREDICTED: pleiotropic drug resistance p | 0.970 | 0.930 | 0.709 | 0.0 | |
| 255587046 | 1437 | ATP-binding cassette transporter, putati | 0.947 | 0.915 | 0.725 | 0.0 | |
| 359486942 | 1447 | PREDICTED: pleiotropic drug resistance p | 0.966 | 0.927 | 0.707 | 0.0 | |
| 359486909 | 1437 | PREDICTED: pleiotropic drug resistance p | 0.961 | 0.929 | 0.708 | 0.0 | |
| 359486905 | 1442 | PREDICTED: pleiotropic drug resistance p | 0.965 | 0.929 | 0.707 | 0.0 | |
| 449511856 | 1455 | PREDICTED: ABC transporter G family memb | 0.978 | 0.934 | 0.702 | 0.0 |
| >gi|359481989|ref|XP_002277172.2| PREDICTED: pleiotropic drug resistance protein 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2152 bits (5575), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 997/1331 (74%), Positives = 1171/1331 (87%), Gaps = 13/1331 (0%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML QVL++G+VV +VDV+ L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 AVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRA 155
VQDKK+L+ESILK+VE+DNEKFL R+R RTDRVGIE PKIEVRY +LS+EGDV+VG+RA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLHRLRDRTDRVGIETPKIEVRYQNLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLML 215
LPTLLN LN +E+ LGL+HL PSKKR ++ILKDVSGIVKPSRMTLLLGPP +GKTTL+L
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLL 206
Query: 216 ALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
ALAGKL DL+ SGK+TYCGHEL+EF+PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV
Sbjct: 207 ALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 266
Query: 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335
GTRYE+LAELSRRE++AGIKPDPEIDAFMKA A++GQETSLVTDYVLKILGLDICAD MV
Sbjct: 267 GTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSGQETSLVTDYVLKILGLDICADIMV 326
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395
GD+MRRGISGGQKKRVTTGEMLVG A VL MDEISTGLDSSTTFQI KF++QMVHI+DVT
Sbjct: 327 GDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQIVKFMRQMVHIMDVT 386
Query: 396 MIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
MI++LLQPAPETYDLFDDIILLS+GQIVYQGPR+NVLEFFE+MGF+CPERKGVADFLQEV
Sbjct: 387 MIISLLQPAPETYDLFDDIILLSDGQIVYQGPRENVLEFFEYMGFRCPERKGVADFLQEV 446
Query: 456 TSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEK 515
TSKKDQEQYW+++NQPY + V DFVE F SFH+GQQ++++L VPYDK++ HPA+LV EK
Sbjct: 447 TSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQQLSAELSVPYDKTRTHPAALVTEK 506
Query: 516 YGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSR 575
YGIS +ELF+ACFAREWLLMKRNSFVYIFKT Q+T MSLI +TV+ RT+M G + G +
Sbjct: 507 YGISNYELFKACFAREWLLMKRNSFVYIFKTTQITIMSLIALTVFLRTQMPHGTLADGGK 566
Query: 576 YFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDS 635
+FGALFFSL+N+MFNG AE AMTV RLP+F+KQRD LFYP+WAFALPIW+LRIP+S ++S
Sbjct: 567 FFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDFLFYPAWAFALPIWVLRIPLSFMES 626
Query: 636 TIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILL 695
IW+ LTYYTIG+ PAASRFF+QFLAFF IH M+L L+R +AAVGRT+V++NTLGTF LL
Sbjct: 627 GIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALSLFRFIAAVGRTQVVANTLGTFTLL 686
Query: 696 IMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIG 755
++ LGGF+++K+DIEPF+ WGYYISPMMYGQ ++++NEFL RW A N D N+PT+G
Sbjct: 687 MVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIVMNEFLDKRWAAPNTDSRFNEPTVG 746
Query: 756 KVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQR 815
KVLLK RGF + W+WI V AL +S LFN LF+AAL +LNP+GD+ + ++
Sbjct: 747 KVLLKSRGFFVDEYWFWICVVALLAFSLLFNVLFVAALTFLNPLGDTKNAILN------- 799
Query: 816 ASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGV 875
EG MAV +SS+ VG+A+N RGM+LPFQPLSL F++++YFVDMPAEMK++GV
Sbjct: 800 ------EGTDMAVINSSEIVGSAENAPKRGMVLPFQPLSLAFEHVNYFVDMPAEMKSQGV 853
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
EDRLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ
Sbjct: 854 EEDRLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQ 913
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
+TFARVSGYCEQNDIHSPYVTV+ESLLYSAWLRLSSDVDT+ RKMFV+EVMELVELK L
Sbjct: 914 KTFARVSGYCEQNDIHSPYVTVHESLLYSAWLRLSSDVDTQTRKMFVEEVMELVELKPLR 973
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
DS+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT
Sbjct: 974 DSLVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1033
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEA 1115
GRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAGPLG SHKL+EYFEA+PGVPKIKE
Sbjct: 1034 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRHSHKLVEYFEAIPGVPKIKEG 1093
Query: 1116 YNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYS 1175
NPATWML VS SVE Q+ +DFAE+YA+SSL+QRN+ELIKELSTPPP S DLYFPT++S
Sbjct: 1094 SNPATWMLVVSASSVEAQMEVDFAEIYANSSLYQRNQELIKELSTPPPASKDLYFPTEFS 1153
Query: 1176 QPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLF 1235
QPF TQ +ACFWKQ+WSYWRNPQYNAIRF MT+VI FG+I+W+KG++T+KQQDL NL
Sbjct: 1154 QPFSTQCKACFWKQHWSYWRNPQYNAIRFFMTIVIGALFGVIFWNKGEQTTKQQDLMNLL 1213
Query: 1236 GAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSV 1295
GAMY+ +FLG +NA +V ++ +ERTV+YRERAAGM++ +PYA AQV++E IYV++Q++
Sbjct: 1214 GAMYAAVLFLGATNASAVQSIVAIERTVFYRERAAGMYSPLPYAFAQVSIEAIYVAIQTI 1273
Query: 1296 VYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSV 1355
VY L+LY+MIGF W++GKF F+Y++ FI FT+YGMM+VALTPG Q+A IV+SFFLS
Sbjct: 1274 VYTLLLYSMIGFDWKVGKFLWFYYYILMCFIYFTMYGMMVVALTPGHQIAAIVMSFFLSF 1333
Query: 1356 WNLFSGFLVAR 1366
WNLFSGFL+ R
Sbjct: 1334 WNLFSGFLIPR 1344
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224069796|ref|XP_002326416.1| predicted protein [Populus trichocarpa] gi|222833609|gb|EEE72086.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 2095 bits (5427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 993/1346 (73%), Positives = 1177/1346 (87%), Gaps = 8/1346 (0%)
Query: 29 WASASIREVWNAPDNVFS-----RSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDG 83
WASASIRE W AP +VFS R ++ DDEEELRWAAIERLPTYDR++KG+L QVL++G
Sbjct: 27 WASASIREAWTAPVDVFSQNSGRRQQQMDDEEELRWAAIERLPTYDRMRKGVLRQVLDNG 86
Query: 84 KVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHL 143
++V+ EVDV+ L +QDKK+L+E+IL++VEEDNEKFL+R+R RTDRVGIEIPKIEVR+ HL
Sbjct: 87 RMVQSEVDVTRLGMQDKKQLMENILRVVEEDNEKFLRRVRDRTDRVGIEIPKIEVRFQHL 146
Query: 144 SVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLL 203
SVEG+V VG+RALPTLLN LN +ES LGL+ L PSKKR+V+IL+D+SGIVKPSRM LLL
Sbjct: 147 SVEGEVFVGSRALPTLLNATLNAVESILGLVGLAPSKKRTVQILQDISGIVKPSRMALLL 206
Query: 204 GPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263
GPP +GKTT+++ALAGKL ++LR+SGKITYCGHEL EFVPQR+CAYISQHDLH+GEMTVR
Sbjct: 207 GPPSSGKTTMLMALAGKLHRELRSSGKITYCGHELKEFVPQRSCAYISQHDLHYGEMTVR 266
Query: 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323
ETLDFSGRCLGVGTRYELLAELSRREK+AGIKPDPEIDAFMKA A++GQE SLVTDY LK
Sbjct: 267 ETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMSGQEHSLVTDYTLK 326
Query: 324 ILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK 383
ILGLDICAD +VG++M+RGISGGQKKRVTTGEMLVG A VL MDEISTGLDS+TTFQICK
Sbjct: 327 ILGLDICADILVGNDMKRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSATTFQICK 386
Query: 384 FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
F++QMVH +DVTMIV+LLQPAPET++LFDDIILLSEGQ+VYQGPR++VLEFFEHMGF+CP
Sbjct: 387 FMRQMVHTMDVTMIVSLLQPAPETFELFDDIILLSEGQVVYQGPREHVLEFFEHMGFRCP 446
Query: 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK 503
+RKG ADFLQEVTSKKDQEQYWFRKN PYR+I V +FV GF SFH+GQQ+ASDLR PYDK
Sbjct: 447 DRKGAADFLQEVTSKKDQEQYWFRKNIPYRFISVLEFVRGFNSFHVGQQLASDLRTPYDK 506
Query: 504 SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRT 563
S+AHPA+LV EKYGIS WELFRACF+REWLLMKRNSF+YIFKT Q+T MS+I TV+FRT
Sbjct: 507 SRAHPAALVTEKYGISNWELFRACFSREWLLMKRNSFLYIFKTTQITIMSIIAFTVFFRT 566
Query: 564 EMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPI 623
EM VG + GG ++FGALFFSL+N+MFNG AE +MTV RLP+FYKQRD LF+P+WAF LPI
Sbjct: 567 EMKVGTVLGGQKFFGALFFSLVNVMFNGMAELSMTVFRLPVFYKQRDFLFFPAWAFGLPI 626
Query: 624 WLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTE 683
W+LRIP+S+++S IW+ +TYYTIG+ P+ASRFF+QFLAFF IH M+L L+R +AAVGRT+
Sbjct: 627 WVLRIPLSLMESAIWIIITYYTIGFAPSASRFFRQFLAFFCIHQMALALFRFIAAVGRTQ 686
Query: 684 VISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQ 743
V++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPMMYGQ ++++NEFL RW
Sbjct: 687 VVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYSSPMMYGQNAIVMNEFLDERWSVN 746
Query: 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSN 803
N D + T+GKVLLK RGF T+ W+WI +GAL G+S LFN LFI AL +LNP+GDS
Sbjct: 747 NTDSNFAGETVGKVLLKARGFFTDDYWFWICIGALFGFSLLFNVLFIVALTFLNPLGDSK 806
Query: 804 STVIEEDGEKQR--ASGHE-AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNM 860
+ V+++D +K + +SG + AEG+ MA R+S++ GA N T RGM+LPFQPLSL F+++
Sbjct: 807 AVVVDDDAKKNKKTSSGQQRAEGIPMATRNSTEIGGAVDNSTKRGMVLPFQPLSLAFNHV 866
Query: 861 SYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG 920
SY+VDMP EMK++G+ E+RLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGG
Sbjct: 867 SYYVDMPDEMKSQGIDEERLQLLRDVSGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGG 926
Query: 921 YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKM 980
YIEG I ISGYPKNQETFARVSGYCEQNDIHSP VTVYESLLYSAWLRLS D+DTK RKM
Sbjct: 927 YIEGSINISGYPKNQETFARVSGYCEQNDIHSPRVTVYESLLYSAWLRLSKDIDTKTRKM 986
Query: 981 FVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
FV+EVMELVEL L D++VGLPG+ GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR
Sbjct: 987 FVEEVMELVELNPLRDALVGLPGLDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1046
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLI 1100
AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAG LGH SHKLI
Sbjct: 1047 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGSLGHRSHKLI 1106
Query: 1101 EYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELST 1160
EYFEAVPGVPKI++AYNPATWMLE+S S+E QL +DFAE YA+SSL+QRN+E+IKELST
Sbjct: 1107 EYFEAVPGVPKIRDAYNPATWMLEISAPSMEAQLDVDFAEQYANSSLYQRNQEIIKELST 1166
Query: 1161 PPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWD 1220
P PGS DLYF T+YSQ FLTQ +ACFWKQ+WSYWRNP+YNAIR MTL I I FGLI+WD
Sbjct: 1167 PAPGSKDLYFRTQYSQTFLTQCKACFWKQHWSYWRNPRYNAIRLFMTLAIGIIFGLIFWD 1226
Query: 1221 KGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYAL 1280
KGQKT QQDL N+FGAMY+ +FLG +NA V +I +ERTV+YRERAAGM++ +PYA
Sbjct: 1227 KGQKTFSQQDLLNVFGAMYAAVLFLGATNAAGVQSIIAIERTVFYRERAAGMYSPLPYAF 1286
Query: 1281 AQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTP 1340
AQVA+E IYV+VQ++VY ++L++M+GF+W KF F+YF++ F+ FTL+GMM+VALTP
Sbjct: 1287 AQVAIEAIYVAVQTIVYSILLFSMMGFEWTAAKFLWFYYFIFMCFVYFTLFGMMVVALTP 1346
Query: 1341 GQQVATIVLSFFLSVWNLFSGFLVAR 1366
Q+A I +SFF S WNLFSGFL+ R
Sbjct: 1347 APQIAAICMSFFTSFWNLFSGFLLPR 1372
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572530|ref|XP_003554421.1| PREDICTED: ABC transporter G family member 39-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 2091 bits (5418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 973/1369 (71%), Positives = 1160/1369 (84%), Gaps = 26/1369 (1%)
Query: 2 SATVADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSER---QDDEEELR 58
SA DDLA +S+ SRRSW +AS R+ W A +VF+ S R +DDEEEL+
Sbjct: 3 SALAGDDLA----------VSTSSRRSWTTASFRDAWTAAPDVFNVSGRHVYEDDEEELK 52
Query: 59 WAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKF 118
WAAI+RLPT++R++KG+L VL+DG V+ EVDVSNL + DKK L++SILKIVEEDNEKF
Sbjct: 53 WAAIDRLPTFERMRKGVLKHVLDDGHVMLDEVDVSNLCLHDKKLLIDSILKIVEEDNEKF 112
Query: 119 LKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVP 178
L+R+R+R DRVGIEIPKIEVR ++LSVEGDVHVG+RALPTLLN LN ES LG+ HL P
Sbjct: 113 LRRLRNRVDRVGIEIPKIEVRCENLSVEGDVHVGSRALPTLLNATLNAFESVLGMFHLAP 172
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
SKKR ++ILKDVSGIVKPSRMTLLLGPP +GKTTL+LALAGKL +DLR SG+ITYCGHEL
Sbjct: 173 SKKREIQILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDRDLRVSGRITYCGHEL 232
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
NEFVPQ+TCAYISQHD+H+GEMTVRETLDFSGRCLGVGTRYE L ELSRRE++AGIKPDP
Sbjct: 233 NEFVPQKTCAYISQHDIHYGEMTVRETLDFSGRCLGVGTRYEALVELSRREREAGIKPDP 292
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
EIDAFMKA+A++GQ+T+LVTDYVLKILGLDICAD +VGDEMRRGISGGQKKRVTTGEMLV
Sbjct: 293 EIDAFMKAIALSGQKTNLVTDYVLKILGLDICADIVVGDEMRRGISGGQKKRVTTGEMLV 352
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
G A L+MDEISTGLDSSTTFQICKF++QMVH++DVTM+++LLQPAPET++LFDDIILLS
Sbjct: 353 GPAKALFMDEISTGLDSSTTFQICKFMRQMVHVMDVTMVISLLQPAPETFELFDDIILLS 412
Query: 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVS 478
EGQIVYQGPR+N LEFFEHMGFKCPERKGV DFLQEVTSKKDQ+QYW RK++PYRY+ VS
Sbjct: 413 EGQIVYQGPRENGLEFFEHMGFKCPERKGVTDFLQEVTSKKDQQQYWSRKDEPYRYVSVS 472
Query: 479 DFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRN 538
+FV+ F SF +G+Q+A++L VPYDK QAHPA+LVK+KYGI+ WELF+ACF+REWLLMKR+
Sbjct: 473 EFVQAFSSFDIGEQLATELGVPYDKRQAHPAALVKDKYGITNWELFKACFSREWLLMKRS 532
Query: 539 SFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMT 598
SFVYIFKT Q+T MS+I TV+ RTEMSVG + G ++FGALFFSL+N+MFNG AE +MT
Sbjct: 533 SFVYIFKTTQITIMSIITFTVFLRTEMSVGTVEDGQKFFGALFFSLINVMFNGMAELSMT 592
Query: 599 VLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658
V RLP+FYKQRD FYP+WAF LPIWLLRIP+SI++S IW+ALTYYTIG+ P+ASRF +Q
Sbjct: 593 VFRLPVFYKQRDFRFYPAWAFGLPIWLLRIPLSIMESGIWIALTYYTIGFAPSASRFIRQ 652
Query: 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGY 718
FLA F+IH M+L L+R +AA GRT V++NTLGT L ++ LGGFV+AKDDIEP++ WGY
Sbjct: 653 FLALFAIHQMALSLFRFLAAAGRTLVVANTLGTLSLQLVFVLGGFVIAKDDIEPWMMWGY 712
Query: 719 YISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGAL 778
Y+SPMMYGQ ++++NEFL RW N DP IN PT+GKVLLK RGF TE W+WI +GAL
Sbjct: 713 YLSPMMYGQNAIVMNEFLDKRWSKPNTDPRINAPTVGKVLLKSRGFYTEEYWFWICIGAL 772
Query: 779 TGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAA 838
G+S LFN LFI AL YLNP+G S + + + EG MAV+ SS+ +
Sbjct: 773 LGFSLLFNLLFIVALTYLNPLGYSKAVIAD-------------EGTDMAVKESSEMASSL 819
Query: 839 QNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898
RGM+LPFQPLSL F+++SY+VDMPAEM++ G+ +DRLQLL VSG FRPG+LTAL
Sbjct: 820 NQEPRRGMVLPFQPLSLAFNHISYYVDMPAEMRSRGINKDRLQLLQDVSGAFRPGILTAL 879
Query: 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958
+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFAR+SGYCEQNDIHSP+VTVY
Sbjct: 880 VGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPHVTVY 939
Query: 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA 1018
ESLL+SAWLRL SDV+ +KRKMFV+EVMELVEL + D++VGLPGV GLSTEQRKRLTIA
Sbjct: 940 ESLLFSAWLRLPSDVNAQKRKMFVEEVMELVELNQIRDALVGLPGVDGLSTEQRKRLTIA 999
Query: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078
VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE+L
Sbjct: 1000 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEIL 1059
Query: 1079 LLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDF 1138
L+KRGG+VIYAGPLG SHKLIEYFE +PGVPKIK+ YNPA+WML++S+ ++E L +DF
Sbjct: 1060 LMKRGGQVIYAGPLGRHSHKLIEYFEGIPGVPKIKDGYNPASWMLDISSTTMEANLEVDF 1119
Query: 1139 AEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQ 1198
AE+YA S+L++RN+ELI+ELSTP P S DL+FPTKYSQ F Q +A FWKQYWSYWR PQ
Sbjct: 1120 AEIYAKSTLYRRNQELIEELSTPVPDSKDLHFPTKYSQSFFVQCKANFWKQYWSYWRYPQ 1179
Query: 1199 YNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVIC 1258
YNA+RF MT+V+ + FG+I+W+K +KT KQQDL NL G MY+ +FLG NA SV PV+
Sbjct: 1180 YNAVRFFMTIVVGVMFGVIFWNKAKKTHKQQDLMNLLGGMYAAMLFLGAMNASSVQPVVA 1239
Query: 1259 VERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFF 1318
+ERT++YRERAAGM++A+PYA QVA+E IY ++Q+ VY LILY+MIGF W+ F F+
Sbjct: 1240 IERTIFYRERAAGMYSALPYAFGQVAIEAIYNAIQTAVYSLILYSMIGFDWKATSFFWFY 1299
Query: 1319 YFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARS 1367
Y++ F+ FTLYGMMIVALTPG QVA I +SFFLS WNLFSGF++ R+
Sbjct: 1300 YYILMCFMYFTLYGMMIVALTPGHQVAAICMSFFLSFWNLFSGFIIPRT 1348
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147794195|emb|CAN77838.1| hypothetical protein VITISV_025837 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2083 bits (5398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 978/1359 (71%), Positives = 1152/1359 (84%), Gaps = 47/1359 (3%)
Query: 36 EVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNL 95
EVW AP +VF+RS RQDDEEELRWAAIERLPTYDRL++GML QVL++G+VV +VDV+ L
Sbjct: 27 EVWTAPPDVFNRSGRQDDEEELRWAAIERLPTYDRLRRGMLRQVLDNGRVVTDDVDVTKL 86
Query: 96 AVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRA 155
VQDKK+L+ESILK+VE+DNEKFL R+R RTDRVGIE PKIEVRY++LS+EGDV+VG+RA
Sbjct: 87 GVQDKKQLMESILKVVEDDNEKFLXRLRDRTDRVGIETPKIEVRYENLSIEGDVYVGSRA 146
Query: 156 LPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPS------------------ 197
LPTLLN LN +E+ LGL+HL PSKKR ++ILKDVSGIVKP
Sbjct: 147 LPTLLNATLNTIEAVLGLIHLAPSKKRKIQILKDVSGIVKPFKMVFIFCLAMAFTHHFLI 206
Query: 198 ------RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYIS 251
RMTLLLGPP +GKTTL+LALAGKL DL+ SGK+TYCGHEL+EF+PQRTCAYIS
Sbjct: 207 FDMVIFRMTLLLGPPSSGKTTLLLALAGKLDHDLKVSGKVTYCGHELDEFIPQRTCAYIS 266
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
QHDLHHGEMTVRETLDFSGRCLGVGTRYE+LAELSRRE++AGIKPDPEIDAFMKA A++G
Sbjct: 267 QHDLHHGEMTVRETLDFSGRCLGVGTRYEMLAELSRREREAGIKPDPEIDAFMKATAMSG 326
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
QETSLVTDYVLKILGLDICAD MVGD+MRRGISGGQKKRVTTGEMLVG A VL MDEIS
Sbjct: 327 QETSLVTDYVLKILGLDICADIMVGDDMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISY 386
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNV 431
+ F C QPAPETYDLFDDIILLS+GQIVYQGPR+NV
Sbjct: 387 RVGQFHHFPDC-------------------QPAPETYDLFDDIILLSDGQIVYQGPRENV 427
Query: 432 LEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQ 491
LEFFE+MGF+CPERKGVADFLQEVTSKKDQEQYW+++NQPY + V DFVE F SFH+GQ
Sbjct: 428 LEFFEYMGFRCPERKGVADFLQEVTSKKDQEQYWYKRNQPYTHASVPDFVEAFNSFHVGQ 487
Query: 492 QIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF 551
Q++++L VPYDK++ HPA+LV EKYGIS +ELF+ACFAREWLLMKRNSFVYIFKT Q+T
Sbjct: 488 QLSAELSVPYDKTRTHPAALVTEKYGISNYELFKACFAREWLLMKRNSFVYIFKTTQITI 547
Query: 552 MSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDH 611
MSLI +TV+ RT+M G + G ++FGALFFSL+N+MFNG AE AMTV RLP+F+KQRD
Sbjct: 548 MSLIALTVFLRTQMPHGTLADGGKFFGALFFSLINVMFNGMAELAMTVFRLPVFFKQRDF 607
Query: 612 LFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLP 671
LFYP+WAFA+PIW+LRIP+S ++S IW+ LTYYTIG+ PAASRFF+QFLAFF IH M+L
Sbjct: 608 LFYPAWAFAMPIWVLRIPLSFMESGIWIILTYYTIGFAPAASRFFRQFLAFFGIHQMALS 667
Query: 672 LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLL 731
L+R +AAVGRT+V++NTLGTF LL++ LGGF+++K+DIEPF+ WGYYISPMMYGQ +++
Sbjct: 668 LFRFIAAVGRTQVVANTLGTFTLLMVFVLGGFIISKNDIEPFMIWGYYISPMMYGQNAIV 727
Query: 732 VNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIA 791
+NEFL RW A N D N+PT+GKVLLK RGF + W+WI V AL +S LFN LF+A
Sbjct: 728 MNEFLDKRWAAPNTDSRFNEPTVGKVLLKSRGFFVDEYWFWICVXALLAFSLLFNVLFVA 787
Query: 792 ALAYLNPIGDSNSTVI--EEDGEKQRASG--HEAEGMQMAVRSSSKTVGAAQNVTNRGMI 847
AL +LNP+GD+ + ++ E+D K +AS H EG MAV +SS+ VG+A+N RGM+
Sbjct: 788 ALTFLNPLGDTKNAILNEEDDKNKNKASSGQHSTEGTDMAVINSSEIVGSAENAPKRGMV 847
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
LPFQPLSL F++++YFVDMPAEMK++GV EDRLQLL VSG FRPG+LTAL+GVSGAGKT
Sbjct: 848 LPFQPLSLAFEHVNYFVDMPAEMKSQGVEEDRLQLLRDVSGAFRPGILTALVGVSGAGKT 907
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967
TLMDVLAGRKTGGYIEG I ISGYPKNQ+TFARVSGYCEQNDIHSPYVTV+ESLLYSAWL
Sbjct: 908 TLMDVLAGRKTGGYIEGSISISGYPKNQKTFARVSGYCEQNDIHSPYVTVHESLLYSAWL 967
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027
RLSSDVDT+ RKMFV+EVMELVELK L DS+VGLPGV GLSTEQRKRLTIAVELVANPSI
Sbjct: 968 RLSSDVDTQTRKMFVEEVMELVELKPLRDSLVGLPGVDGLSTEQRKRLTIAVELVANPSI 1027
Query: 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+VI
Sbjct: 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI 1087
Query: 1088 YAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSL 1147
YAGPLG SHKL+EYFEA+PGVPKIKE NPATWML VS SVE Q+ +DFAE+YA+SSL
Sbjct: 1088 YAGPLGRHSHKLVEYFEAIPGVPKIKEGSNPATWMLVVSASSVEAQMEVDFAEIYANSSL 1147
Query: 1148 HQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMT 1207
+QRN+ELIKELSTPPP S DLYFPT++SQPF TQ +ACFWKQ+WSYWRNPQYNAIRF MT
Sbjct: 1148 YQRNQELIKELSTPPPXSKDLYFPTEFSQPFSTQCKACFWKQHWSYWRNPQYNAIRFFMT 1207
Query: 1208 LVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRE 1267
+VI FG+I+W+KG++T+KQQDL NL GAMY+ +FLG +NA +V ++ +ERTV+YRE
Sbjct: 1208 IVIGALFGVIFWNKGEQTTKQQDLMNLLGAMYAAVLFLGATNASAVQSIVAIERTVFYRE 1267
Query: 1268 RAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFII 1327
RAAGM++ +PYA AQV++E IYV++Q++VY L+LY+MIGF W++GKF F+Y++ FI
Sbjct: 1268 RAAGMYSPLPYAFAQVSIEAIYVAIQTIVYTLLLYSMIGFDWKVGKFLWFYYYILMCFIY 1327
Query: 1328 FTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
FT+YGMM+VALTPG Q+A IV+SFFLS WNLFSGFL+ R
Sbjct: 1328 FTMYGMMVVALTPGHQIAAIVMSFFLSFWNLFSGFLIPR 1366
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486907|ref|XP_002267345.2| PREDICTED: pleiotropic drug resistance protein 2-like isoform 1 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2081 bits (5393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 962/1356 (70%), Positives = 1161/1356 (85%), Gaps = 8/1356 (0%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A N D I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPF 850
AL YL+P+GDS S +I+E+ E++ E + V+ ++ T T RGM+LPF
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEKSEKQKTRESTKSVVKDANHT------PTKRGMVLPF 843
Query: 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910
QPLSL F++++Y+VDMPA MK++G+ DRLQLL SG FRPG+ AL+GVSGAGKTTLM
Sbjct: 844 QPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLM 903
Query: 911 DVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970
DVLAGRKTGGYIEG I ISGYPKNQ TFAR+SGYCEQNDIHSP VTVYESL+YSAWLRL+
Sbjct: 904 DVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLA 963
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
DV + R++FV+EVMELVEL L D++VGLPG+ GLSTEQRKRLT+AVELVANPSI+FM
Sbjct: 964 PDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFM 1023
Query: 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
DEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG++IYAG
Sbjct: 1024 DEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAG 1083
Query: 1091 PLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQR 1150
LG SHKL+EYFEAVPGVPK+++ NPATWMLE+S+ +VE QLG+DFAE+YA S L+QR
Sbjct: 1084 ALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQR 1143
Query: 1151 NKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVI 1210
N+ELIKELSTP PGS DLYFPTKYSQ F++Q +ACFWKQ+WSYWRNP YNAIRF +T++I
Sbjct: 1144 NQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHWSYWRNPPYNAIRFFLTIII 1203
Query: 1211 AIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAA 1270
+ FG+I+W+KG+KT K+QDL NL GAM+S FLG +N SV PV+ +ERTV+YRERAA
Sbjct: 1204 GVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTSSVQPVVAIERTVFYRERAA 1263
Query: 1271 GMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTL 1330
GM++A+PYA AQVA+E IYV++Q++VY L+LY+M+GF W + KF F+Y++ FI FTL
Sbjct: 1264 GMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTL 1323
Query: 1331 YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
YGMMIVALTP Q+A IV+SFFLS WNLF+GFL+ R
Sbjct: 1324 YGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPR 1359
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255587046|ref|XP_002534113.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223525836|gb|EEF28273.1| ATP-binding cassette transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 2078 bits (5385), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 965/1331 (72%), Positives = 1158/1331 (87%), Gaps = 15/1331 (1%)
Query: 38 WNAPDNVFSRSERQDDEEELR-WAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLA 96
W + + VF+RS+R++++EE WAAIERLPTY R++KGML QVL++G V++ EVD+ L
Sbjct: 30 WTSGNGVFNRSQRREEDEEELRWAAIERLPTYRRMRKGMLRQVLDNGSVIESEVDLRKLG 89
Query: 97 VQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRAL 156
+QDKK+L+ESILK E+DNEKFL R+R R DRVGI+IPKIEVR++HLSV GDVHVG+RAL
Sbjct: 90 LQDKKKLMESILKDAEDDNEKFLTRLRERADRVGIDIPKIEVRFEHLSVGGDVHVGSRAL 149
Query: 157 PTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLA 216
PTLLN LN +E+ LGL+ L PSKKR ++IL+D+SGIV+PSRMTLLLGPPGAGKTTL+LA
Sbjct: 150 PTLLNATLNSVETVLGLIGLAPSKKRRIQILQDLSGIVRPSRMTLLLGPPGAGKTTLLLA 209
Query: 217 LAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVG 276
LAGKL +DLR GKITYCGHEL+EF+PQRTCAYISQHD+HHGEMTVRET DFSGRCLGVG
Sbjct: 210 LAGKLDQDLRKLGKITYCGHELHEFIPQRTCAYISQHDVHHGEMTVRETFDFSGRCLGVG 269
Query: 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336
TRYE+LAELSRREK +GIKPD EIDAFMKA A++GQ+TSLVTDYVLK+LGLDICAD +VG
Sbjct: 270 TRYEMLAELSRREKASGIKPDSEIDAFMKATALSGQKTSLVTDYVLKLLGLDICADIVVG 329
Query: 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTM 396
D+MRRGISGGQKKRVTTGEMLVG A VL MDEISTGLDSSTTFQIC+F++QMVHI+D+TM
Sbjct: 330 DQMRRGISGGQKKRVTTGEMLVGPAKVLLMDEISTGLDSSTTFQICRFMRQMVHIMDITM 389
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
I++LLQPAPET++LFDD+ILLS+GQIVYQGPR+N+LEFFE+MGF+CPERKGVADFLQEVT
Sbjct: 390 IISLLQPAPETFELFDDVILLSDGQIVYQGPRENILEFFEYMGFRCPERKGVADFLQEVT 449
Query: 457 SKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKY 516
SKKDQEQYW++K+QPY +I V DFV+GF SFH+GQQ+ASDL VPY+KS+AHPA+LV +KY
Sbjct: 450 SKKDQEQYWYKKDQPYSFISVPDFVQGFSSFHIGQQLASDLSVPYNKSRAHPAALVMDKY 509
Query: 517 GISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576
GIS WELF+ACF+REWLLMKRNSFVYIFKT Q+T MS+I TV+ RTEM VG + G ++
Sbjct: 510 GISNWELFKACFSREWLLMKRNSFVYIFKTVQITIMSIIAFTVFLRTEMKVGTVADGQKF 569
Query: 577 FGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDST 636
+GALFFSL+N+MFNG AE A+T+ RLP+++KQRD LFYP+WAFALPIW+LRIP+S L+S
Sbjct: 570 YGALFFSLINVMFNGMAELALTMFRLPVYFKQRDFLFYPAWAFALPIWVLRIPLSFLESG 629
Query: 637 IWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLI 696
IW+ LTYYTIG+ PAASRFF+QFL FF IH M+L L+R +AAVGRTE+++NTLGTF LL+
Sbjct: 630 IWILLTYYTIGFAPAASRFFRQFLTFFGIHQMALSLFRFIAAVGRTEIVANTLGTFTLLL 689
Query: 697 MMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGK 756
+ LGGF++A++DI P++ WGYY+SPMMYGQ ++++NEFL RW A N DP I+ PT+GK
Sbjct: 690 VFVLGGFIIAREDIAPWMIWGYYVSPMMYGQNAIVMNEFLDERWSAPNPDPRIDAPTVGK 749
Query: 757 VLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRA 816
VLLK RGF T+ W+WI VGAL G+S LFN LFIAAL +LNP+G+S +++
Sbjct: 750 VLLKARGFFTDDYWFWICVGALFGFSLLFNILFIAALTFLNPLGNSKGHIVD-------- 801
Query: 817 SGHEAEGMQMAVRSSSKTVGAAQNVTN-RGMILPFQPLSLTFDNMSYFVDMPAEMKTEGV 875
EG MAVR+SS VGA + +T+ RGM+LPFQPLSL F+ ++Y+VDMPAEMK EGV
Sbjct: 802 -----EGTDMAVRNSSDGVGAERLMTSKRGMVLPFQPLSLAFNLVNYYVDMPAEMKKEGV 856
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
E RLQLL VSG FRPG+LTAL+GVSGAGKTTLMDVLAGRKT GYI+G I ISGYPKNQ
Sbjct: 857 QEKRLQLLRDVSGSFRPGILTALVGVSGAGKTTLMDVLAGRKTTGYIDGSINISGYPKNQ 916
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
TFARVSGYCEQNDIHSP+VTVYESLLYSAWLRLS DVDTK RKMF++E+M+LVEL +
Sbjct: 917 ATFARVSGYCEQNDIHSPHVTVYESLLYSAWLRLSKDVDTKMRKMFIEEIMDLVELDPIR 976
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D++VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT
Sbjct: 977 DALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1036
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEA 1115
GRTVVCTIHQPSIDIFEAFDELLL+KRGG+VIYAGPLG SHKLIEYFEA+PGVPKIK+
Sbjct: 1037 GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPLGRFSHKLIEYFEAIPGVPKIKDG 1096
Query: 1116 YNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYS 1175
YNPATWML++S S+E QL +DFAE+Y +SSL+QRN+ELIKELS PP GS DLY PTKYS
Sbjct: 1097 YNPATWMLDISTSSMETQLNVDFAEIYVNSSLYQRNQELIKELSIPPSGSKDLYLPTKYS 1156
Query: 1176 QPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLF 1235
Q FL Q +ACFWK +WSYWRNPQYNAIRF +T++I FGLI+W+KGQK KQQDL NL
Sbjct: 1157 QSFLVQCKACFWKHHWSYWRNPQYNAIRFFLTVIIGTLFGLIFWNKGQKIGKQQDLMNLL 1216
Query: 1236 GAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSV 1295
GA+YS FLG N SV PV+ +ERTV+YRERAAGM++A+PYA AQVA+E+IY+++Q+V
Sbjct: 1217 GAIYSAVFFLGACNTSSVQPVVAIERTVFYRERAAGMYSALPYAFAQVAIEVIYIAIQTV 1276
Query: 1296 VYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSV 1355
VY LIL++MIGF+W++GKF FFYF++ SF+ FTLYGMM+VALTP Q+A IV+SFF+S+
Sbjct: 1277 VYTLILFSMIGFEWKVGKFLWFFYFLFMSFVYFTLYGMMVVALTPNHQIAAIVMSFFISL 1336
Query: 1356 WNLFSGFLVAR 1366
WN+F+GF++ R
Sbjct: 1337 WNMFTGFIIPR 1347
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486942|ref|XP_002265628.2| PREDICTED: pleiotropic drug resistance protein 2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2074 bits (5373), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 964/1362 (70%), Positives = 1157/1362 (84%), Gaps = 20/1362 (1%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S+ SGSRRSWASASIREV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSTSSRS-KSLGSGSRRSWASASIREVVSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEV ++HLS+EGD +VGTRALPTLLN +N +E LGL+ L PSKKR V+ILKDV
Sbjct: 130 VEIPKIEVWFEHLSIEGDAYVGTRALPTLLNFTMNFIEGILGLIRLSPSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK+AGIKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKEAGIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLKILGLDICAD +VGD+MRRGISGG+KKRVT GEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKILGLDICADIVVGDDMRRGISGGEKKRVTIGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQ+ KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQVVKFMRQMVHIMEVTMIISLLQPAPETYDLFDGIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCPERKGVADFLQEVTS+KDQEQYWFRKN+PYRYI V +FV+ F SFH+G
Sbjct: 430 ILEFFESIGFKCPERKGVADFLQEVTSRKDQEQYWFRKNEPYRYISVPEFVQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ D +PYD+S+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDFGIPYDRSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGLAELALTIFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIGY PAASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGYAPAASRFFRQLLAFFVVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT +++NTL TF LL++ LGGFV++KDDI+P++ WGYY SPMMYGQ +L
Sbjct: 670 SLFRFIAALGRTLIVANTLATFTLLLVSVLGGFVVSKDDIKPWMIWGYYASPMMYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW N I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSTPNIYTRIPEPTVGKALLKARGMFVDGYWYWISVGALLGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAA-----QNVTNRG 845
AAL YL+P+GDS S +I+ EG+ M VR++ + A +T RG
Sbjct: 790 AALTYLDPLGDSKSVIID-------------EGIDMEVRNTRENTKAVVKDANHALTKRG 836
Query: 846 MILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAG 905
M+LPFQPLSL F++++Y+VDMPA MK++G D LQLL SG FRPG+L AL+GVSGAG
Sbjct: 837 MVLPFQPLSLAFEHVNYYVDMPAGMKSQGNEADHLQLLRDASGAFRPGILMALVGVSGAG 896
Query: 906 KTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSA 965
KTTLMDVLAGRKT GYIEG I ISGYPKNQ TFAR+SGYCEQ DIHSP VTVYESL+YSA
Sbjct: 897 KTTLMDVLAGRKTSGYIEGSISISGYPKNQATFARISGYCEQTDIHSPNVTVYESLVYSA 956
Query: 966 WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025
WLRL+ DV + R++FV+EVM+LVEL L +++VGLPG+ GLSTEQRKRLT+AVELVANP
Sbjct: 957 WLRLAPDVKKETRQVFVEEVMDLVELHPLRNALVGLPGIDGLSTEQRKRLTVAVELVANP 1016
Query: 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
SIIFMDEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG+
Sbjct: 1017 SIIFMDEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQ 1076
Query: 1086 VIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADS 1145
+IYAGPLG SHKL+EYFEAVPGVPK+++ NPATWMLE+S+ +VE QLG+DFAE+YA S
Sbjct: 1077 IIYAGPLGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKS 1136
Query: 1146 SLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFG 1205
L+QRN+E IKELSTP PGS DLYFPTKYSQ F+TQ +ACFWKQ+WSYWRNP YNA+RF
Sbjct: 1137 ELYQRNQEFIKELSTPSPGSKDLYFPTKYSQSFITQCKACFWKQHWSYWRNPPYNALRFF 1196
Query: 1206 MTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYY 1265
+T++I + FGLI+W++G++T K+QDL NL GAM++ FLG +NA SV P++ +ERTV+Y
Sbjct: 1197 LTIIIGVLFGLIFWNEGEQTDKEQDLINLLGAMFAAVFFLGATNAASVQPIVAIERTVFY 1256
Query: 1266 RERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASF 1325
RERAAGM++A+PYA AQVA+E IY+++Q+ VY L+LY+MIGF W + KF F+Y++ F
Sbjct: 1257 RERAAGMYSALPYAFAQVAIEAIYITIQTFVYTLLLYSMIGFYWRVDKFLWFYYYLLMCF 1316
Query: 1326 IIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARS 1367
I FTLYGMMIVALTP Q+A I++SFFLS WNLFSGFL+ R+
Sbjct: 1317 IYFTLYGMMIVALTPNHQIAAILMSFFLSFWNLFSGFLIPRT 1358
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486909|ref|XP_003633487.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 3 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2071 bits (5366), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 961/1356 (70%), Positives = 1159/1356 (85%), Gaps = 20/1356 (1%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A N D I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAPNIDQRIPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 789
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPF 850
AL YL+P+GDS S +I+E+ E++ V+ ++ T T RGM+LPF
Sbjct: 790 VALTYLDPLGDSKSVIIDEENEEK------------IVKDANHT------PTKRGMVLPF 831
Query: 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910
QPLSL F++++Y+VDMPA MK++G+ DRLQLL SG FRPG+ AL+GVSGAGKTTLM
Sbjct: 832 QPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLM 891
Query: 911 DVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970
DVLAGRKTGGYIEG I ISGYPKNQ TFAR+SGYCEQNDIHSP VTVYESL+YSAWLRL+
Sbjct: 892 DVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLA 951
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
DV + R++FV+EVMELVEL L D++VGLPG+ GLSTEQRKRLT+AVELVANPSI+FM
Sbjct: 952 PDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFM 1011
Query: 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
DEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG++IYAG
Sbjct: 1012 DEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAG 1071
Query: 1091 PLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQR 1150
LG SHKL+EYFEAVPGVPK+++ NPATWMLE+S+ +VE QLG+DFAE+YA S L+QR
Sbjct: 1072 ALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQR 1131
Query: 1151 NKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVI 1210
N+ELIKELSTP PGS DLYFPTKYSQ F++Q +ACFWKQ+WSYWRNP YNAIRF +T++I
Sbjct: 1132 NQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHWSYWRNPPYNAIRFFLTIII 1191
Query: 1211 AIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAA 1270
+ FG+I+W+KG+KT K+QDL NL GAM+S FLG +N SV PV+ +ERTV+YRERAA
Sbjct: 1192 GVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTSSVQPVVAIERTVFYRERAA 1251
Query: 1271 GMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTL 1330
GM++A+PYA AQVA+E IYV++Q++VY L+LY+M+GF W + KF F+Y++ FI FTL
Sbjct: 1252 GMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTL 1311
Query: 1331 YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
YGMMIVALTP Q+A IV+SFFLS WNLF+GFL+ R
Sbjct: 1312 YGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPR 1347
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359486905|ref|XP_003633486.1| PREDICTED: pleiotropic drug resistance protein 2-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 2068 bits (5359), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 960/1356 (70%), Positives = 1160/1356 (85%), Gaps = 15/1356 (1%)
Query: 11 RSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIERLPTYDR 70
RS S R +S++SGSRRSWASASI EV +A +VF +S R+DDEEEL+WAAIERLPT++R
Sbjct: 12 RSMSSRR-KSLASGSRRSWASASILEVLSAQGDVF-QSRREDDEEELKWAAIERLPTFER 69
Query: 71 LKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130
L+KGML QVL+DGKVV EVD +NL +Q++K L+ESILK+VEEDNEKFL R+R RTDRVG
Sbjct: 70 LRKGMLKQVLDDGKVVHEEVDFTNLGMQERKHLIESILKVVEEDNEKFLLRLRERTDRVG 129
Query: 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190
+EIPKIEVR++HLSVEGD +VGTRALPTLLN +N +E LGL+ L SKKR V+ILKDV
Sbjct: 130 VEIPKIEVRFEHLSVEGDAYVGTRALPTLLNSTMNFIEGILGLIRLSSSKKRVVKILKDV 189
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
SGIVKPSRMTLLLGPP +GKTTL+ ALAGK+ KDLR GKITYCGHEL+EFVPQRTCAYI
Sbjct: 190 SGIVKPSRMTLLLGPPASGKTTLLQALAGKMDKDLRMEGKITYCGHELSEFVPQRTCAYI 249
Query: 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVA 310
SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK++ IKPDPEIDAFMKA A+A
Sbjct: 250 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKESAIKPDPEIDAFMKATAMA 309
Query: 311 GQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370
GQETSLVTDYVLK+LGLDICAD ++GD+MRRGISGG+KKRVTTGEMLVG A L+MDEIS
Sbjct: 310 GQETSLVTDYVLKMLGLDICADIVLGDDMRRGISGGEKKRVTTGEMLVGPAKALFMDEIS 369
Query: 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
TGLDSSTTFQI KF++QMVHI++VTMI++LLQPAPETYDLFD IILL EGQIVYQGPR+N
Sbjct: 370 TGLDSSTTFQIVKFMRQMVHIMEVTMIISLLQPAPETYDLFDAIILLCEGQIVYQGPREN 429
Query: 431 VLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490
+LEFFE +GFKCP+RKGVADFLQEVTS+K+QEQYWFR N+PY+YI V +F + F SFH+G
Sbjct: 430 ILEFFESVGFKCPKRKGVADFLQEVTSRKEQEQYWFRHNEPYKYISVPEFAQHFNSFHIG 489
Query: 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLT 550
Q+++ DL +PY+KS+ HPA+LV EKYGIS WELF+ACFAREWLLMKRNSF+YIFKT Q+T
Sbjct: 490 QKLSDDLGIPYNKSRTHPAALVTEKYGISNWELFKACFAREWLLMKRNSFIYIFKTTQIT 549
Query: 551 FMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610
MS+I MTV+FRTEM G + G +++GALF+SL+N+MFNG AE A+T+ RLP+F+KQRD
Sbjct: 550 IMSVIAMTVFFRTEMKHGQLQDGVKFYGALFYSLINVMFNGMAELALTLFRLPVFFKQRD 609
Query: 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSL 670
LFYP+WAFALPIW+LRIP+S+++S IW+ LTYYTIG+ P+ASRFF+Q LAFF +H M+L
Sbjct: 610 FLFYPAWAFALPIWVLRIPLSLMESGIWIILTYYTIGFAPSASRFFRQLLAFFGVHQMAL 669
Query: 671 PLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730
L+R +AA+GRT++++NTLGTF LL++ LGGF++AKDDIEP++ WGYY SPM YGQ +L
Sbjct: 670 SLFRFIAALGRTQIVANTLGTFTLLLVFVLGGFIVAKDDIEPWMIWGYYASPMTYGQNAL 729
Query: 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFI 790
++NEFL RW A I +PT+GK LLK RG + WYWI VGAL G+S LFN FI
Sbjct: 730 VINEFLDDRWSAVR----IPEPTVGKALLKARGMFVDGYWYWICVGALMGFSLLFNICFI 785
Query: 791 AALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPF 850
AL YL+P+GDS S +I+E+ E++ + E + V+ ++ T T RGM+LPF
Sbjct: 786 VALTYLDPLGDSKSVIIDEENEEK---SEKQESTKSVVKDANHT------PTKRGMVLPF 836
Query: 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910
QPLSL F++++Y+VDMPA MK++G+ DRLQLL SG FRPG+ AL+GVSGAGKTTLM
Sbjct: 837 QPLSLAFEHVNYYVDMPAGMKSQGIEADRLQLLRDASGAFRPGIQIALVGVSGAGKTTLM 896
Query: 911 DVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970
DVLAGRKTGGYIEG I ISGYPKNQ TFAR+SGYCEQNDIHSP VTVYESL+YSAWLRL+
Sbjct: 897 DVLAGRKTGGYIEGSISISGYPKNQATFARISGYCEQNDIHSPNVTVYESLVYSAWLRLA 956
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
DV + R++FV+EVMELVEL L D++VGLPG+ GLSTEQRKRLT+AVELVANPSI+FM
Sbjct: 957 PDVKKETRQVFVEEVMELVELHPLRDALVGLPGIHGLSTEQRKRLTVAVELVANPSILFM 1016
Query: 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
DEPT+GLDARAAA+VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG++IYAG
Sbjct: 1017 DEPTTGLDARAAAVVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQIIYAG 1076
Query: 1091 PLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQR 1150
LG SHKL+EYFEAVPGVPK+++ NPATWMLE+S+ +VE QLG+DFAE+YA S L+QR
Sbjct: 1077 ALGRNSHKLVEYFEAVPGVPKVRDGQNPATWMLEISSAAVEAQLGVDFAEIYAKSELYQR 1136
Query: 1151 NKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVI 1210
N+ELIKELSTP PGS DLYFPTKYSQ F++Q +ACFWKQ+WSYWRNP YNAIRF +T++I
Sbjct: 1137 NQELIKELSTPSPGSKDLYFPTKYSQSFISQCKACFWKQHWSYWRNPPYNAIRFFLTIII 1196
Query: 1211 AIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAA 1270
+ FG+I+W+KG+KT K+QDL NL GAM+S FLG +N SV PV+ +ERTV+YRERAA
Sbjct: 1197 GVLFGVIFWNKGEKTDKEQDLINLLGAMFSAVFFLGATNTSSVQPVVAIERTVFYRERAA 1256
Query: 1271 GMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTL 1330
GM++A+PYA AQVA+E IYV++Q++VY L+LY+M+GF W + KF F+Y++ FI FTL
Sbjct: 1257 GMYSALPYAFAQVAIEAIYVAIQTLVYSLLLYSMMGFYWRVDKFLWFYYYLLMCFIYFTL 1316
Query: 1331 YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
YGMMIVALTP Q+A IV+SFFLS WNLF+GFL+ R
Sbjct: 1317 YGMMIVALTPNHQIAAIVMSFFLSFWNLFAGFLIPR 1352
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511856|ref|XP_004164072.1| PREDICTED: ABC transporter G family member 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 2062 bits (5342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 957/1362 (70%), Positives = 1172/1362 (86%), Gaps = 3/1362 (0%)
Query: 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRSERQDDEEELRWAAIER 64
VADDLARS S R S +S S+RSWA+ASIREVW A +VFSRS RQ+DEEEL+WAA+ER
Sbjct: 7 VADDLARSMSRR---SWASASQRSWATASIREVWQAQPDVFSRSGRQEDEEELKWAALER 63
Query: 65 LPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRH 124
LPTYDRL+KGML VL++G+VV EVDV+ + +Q+K++L+ES+LKI+EEDNEKFL+R+R
Sbjct: 64 LPTYDRLRKGMLKHVLDNGRVVHDEVDVTKIGMQEKQQLMESMLKIIEEDNEKFLRRLRD 123
Query: 125 RTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSV 184
RTDRVGIE+PK+EVRY+HL+VEG++HVG+RALPTLLNV LN+ ES LGL+ L PS+KR +
Sbjct: 124 RTDRVGIEMPKVEVRYEHLAVEGELHVGSRALPTLLNVFLNIAESVLGLVRLAPSRKRKI 183
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ILKD+SGIVKPSRMTLLLGPP +GKTT + ALAGKL +L+ +GKITYCGHE EFVPQ
Sbjct: 184 QILKDISGIVKPSRMTLLLGPPSSGKTTFLRALAGKLENNLKETGKITYCGHEFKEFVPQ 243
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT AYISQHDLH+ EMTVRET DFSGRC GVGTRYE+L ELSRREK+AGIKPDPEIDAFM
Sbjct: 244 RTSAYISQHDLHNWEMTVRETFDFSGRCQGVGTRYEMLEELSRREKEAGIKPDPEIDAFM 303
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
KA++V+GQ T+L TDYVLKILGLDICAD +VG+EMRRGISGGQ+KRVTTGEMLVG A L
Sbjct: 304 KAISVSGQRTNLFTDYVLKILGLDICADIIVGNEMRRGISGGQRKRVTTGEMLVGPAKGL 363
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+MDEISTGLDSSTTFQICKF+KQMVHI+DVTMI++LLQPAPET+DLFDD+ILLSEG++VY
Sbjct: 364 FMDEISTGLDSSTTFQICKFMKQMVHIMDVTMIISLLQPAPETFDLFDDVILLSEGEVVY 423
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGF 484
QGPR+NVLEFFE MGFKCPERKGVADFLQEVTSKKDQEQYWF+K+QPYRY+ V +F++GF
Sbjct: 424 QGPRENVLEFFEFMGFKCPERKGVADFLQEVTSKKDQEQYWFKKSQPYRYVSVPEFIQGF 483
Query: 485 KSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544
K FH+GQ++ ++L VP+DK HPA+LV +KYG+S W+LFRA F+REWLLMKRNSF+YIF
Sbjct: 484 KKFHIGQRLNTELGVPFDKRSTHPAALVTQKYGLSNWQLFRALFSREWLLMKRNSFIYIF 543
Query: 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPI 604
KT Q+T MSLI MTV+FRTEM G + GG +Y GALFFSL+N+MFNG AE A+T+ RLP+
Sbjct: 544 KTVQITIMSLITMTVFFRTEMKPGTLEGGGKYLGALFFSLINMMFNGMAELALTITRLPV 603
Query: 605 FYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFS 664
FYKQRD LF+P WAF LPIW+LRIP+S+++S IW+ LTYYTIG+ PAASRFF+QFLA+F
Sbjct: 604 FYKQRDSLFFPGWAFGLPIWVLRIPLSLMESGIWIGLTYYTIGFAPAASRFFRQFLAYFG 663
Query: 665 IHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMM 724
IH M+L L+R +AA GR +VI++T+G+F LLI+ LGGF++AK DIEP++ WGYYISPMM
Sbjct: 664 IHQMALSLFRFIAAAGRVQVIASTMGSFTLLIVFVLGGFIIAKGDIEPWMIWGYYISPMM 723
Query: 725 YGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784
YGQ ++++NEFL RW+ + +P + T+GKV+L R F T + YWI VGAL G+SFL
Sbjct: 724 YGQNAIVINEFLDDRWNKDSSNPLLRGTTVGKVILASRDFYTTNKMYWICVGALFGFSFL 783
Query: 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNR 844
FN LFI AL +LNP+GDS S + +E +K+ + G+QM SS + + +
Sbjct: 784 FNILFIMALTFLNPLGDSRSAIADEANDKKNNPYSSSRGIQMQPIKSSNAANNSNSTEKK 843
Query: 845 GMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGA 904
GM+LPFQPLSL F++++Y+VDMPAEMK++G+ +DRLQLL VSG FRPGVLTAL+GVSGA
Sbjct: 844 GMVLPFQPLSLAFNHVNYYVDMPAEMKSQGIDDDRLQLLRDVSGAFRPGVLTALVGVSGA 903
Query: 905 GKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
GKTTLMDVLAGRKTGGYIEG I ISGYPKNQETFARVSGYCEQNDIHSP++TVYES+LYS
Sbjct: 904 GKTTLMDVLAGRKTGGYIEGSINISGYPKNQETFARVSGYCEQNDIHSPHLTVYESVLYS 963
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
AWLRL S V+T+ RKMFV+EVMELVEL L +++VGLPG+ GLSTEQRKRLTIAVELVAN
Sbjct: 964 AWLRLPSSVNTETRKMFVEEVMELVELNPLREALVGLPGIDGLSTEQRKRLTIAVELVAN 1023
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE+FDEL L+KRGG
Sbjct: 1024 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMKRGG 1083
Query: 1085 RVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYAD 1144
+VIYAG LGH+SH+L+EYFE+VPGVPKIK+ YNPATWMLEV+ SVE QL +DFA++YA+
Sbjct: 1084 QVIYAGSLGHQSHRLVEYFESVPGVPKIKDGYNPATWMLEVTASSVETQLDVDFADIYAN 1143
Query: 1145 SSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRF 1204
S+L+QRN+ELI ELS PPPGS DL+FPTKYSQ F QF+ACFWK Y SYWRNP+YNA+RF
Sbjct: 1144 SALYQRNQELIAELSQPPPGSEDLHFPTKYSQTFTVQFKACFWKWYRSYWRNPRYNAVRF 1203
Query: 1205 GMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVY 1264
MT++I + FGLI+W+KG+KT K+QDL+N GAMY+ +FLG SNA ++ PV+ +ERTV+
Sbjct: 1204 FMTVMIGLLFGLIFWNKGEKTEKEQDLRNFLGAMYAAILFLGASNASAIQPVVSIERTVF 1263
Query: 1265 YRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWAS 1324
YRERAAGM++ +PYA +QVA+E+IY ++Q+++Y L+L++M+GF+W+ F F+YF+
Sbjct: 1264 YRERAAGMYSPLPYAFSQVAIEVIYNAIQTIIYSLLLFSMMGFQWKASNFFWFYYFILMC 1323
Query: 1325 FIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
F+ FT++GMMI+ALTPG Q+A I +SFFLS WNLFSGF+V R
Sbjct: 1324 FVYFTMFGMMIIALTPGPQIAAIAMSFFLSFWNLFSGFMVPR 1365
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1389 | ||||||
| TAIR|locus:2044893 | 1453 | ABCG34 "ATP-binding cassette G | 0.954 | 0.912 | 0.687 | 0.0 | |
| TAIR|locus:2019693 | 1454 | ABCG39 "ATP-binding cassette G | 0.949 | 0.907 | 0.688 | 0.0 | |
| TAIR|locus:2196593 | 1423 | ABCG40 "ATP-binding cassette G | 0.946 | 0.924 | 0.600 | 0.0 | |
| TAIR|locus:2025931 | 1469 | PEN3 "PENETRATION 3" [Arabidop | 0.951 | 0.899 | 0.584 | 0.0 | |
| TAIR|locus:2037703 | 1442 | ABCG35 "ATP-binding cassette G | 0.944 | 0.909 | 0.574 | 0.0 | |
| TAIR|locus:2039523 | 1420 | ABCG32 "ATP-binding cassette G | 0.951 | 0.930 | 0.550 | 0.0 | |
| TAIR|locus:2049867 | 1413 | ABCG33 "ATP-binding cassette G | 0.941 | 0.925 | 0.512 | 0.0 | |
| TAIR|locus:2084081 | 1450 | ABCG37 "ATP-binding cassette G | 0.938 | 0.899 | 0.518 | 0.0 | |
| TAIR|locus:2045683 | 1426 | ABCG31 "ATP-binding cassette G | 0.546 | 0.532 | 0.500 | 0.0 | |
| TAIR|locus:2094952 | 1416 | ABCG29 "ATP-binding cassette G | 0.675 | 0.662 | 0.480 | 1.4e-231 |
| TAIR|locus:2044893 ABCG34 "ATP-binding cassette G34" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4943 (1745.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 917/1333 (68%), Positives = 1108/1333 (83%)
Query: 36 EVWNAP-DNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
+V+ P D+VF RS+R ++D+ ELRWAA+ERLPTYDRL+KGML Q + +GK+ +VDV+
Sbjct: 36 DVFAPPTDDVFGRSDRREEDDVELRWAALERLPTYDRLRKGMLPQTMVNGKIGLEDVDVT 95
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
NLA ++KK L+E ILK VEEDNEKFL+R+R RTDRVGIE+PKIEVRY++LSVEGDV +
Sbjct: 96 NLAPKEKKHLMEMILKFVEEDNEKFLRRLRERTDRVGIEVPKIEVRYENLSVEGDVRSAS 155
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPTL NV LN +ES LGL HL+PSKKR + ILKD+SGI+KPSRMTLLLGPP +GKTTL
Sbjct: 156 RALPTLFNVTLNTIESILGLFHLLPSKKRKIEILKDISGIIKPSRMTLLLGPPSSGKTTL 215
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+ ALAGKL L+ SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE+LDFSGRCL
Sbjct: 216 LQALAGKLDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVRESLDFSGRCL 275
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVGTRY+LL ELSRRE++AGIKPDPEIDAFMK++A++GQETSLVTDYVLK+LGLDICADT
Sbjct: 276 GVGTRYQLLTELSRREREAGIKPDPEIDAFMKSIAISGQETSLVTDYVLKLLGLDICADT 335
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
+VGD MRRGISGGQ+KR+TTGEMLVG A L+MDEISTGLDSSTTFQICKF++Q+VHI D
Sbjct: 336 LVGDVMRRGISGGQRKRLTTGEMLVGPATALFMDEISTGLDSSTTFQICKFMRQLVHIAD 395
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
VTM+++LLQPAPET++LFDDIILLSEGQIVYQG RDNVLEFFE+MGFKCPERKG+ADFLQ
Sbjct: 396 VTMVISLLQPAPETFELFDDIILLSEGQIVYQGSRDNVLEFFEYMGFKCPERKGIADFLQ 455
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQEQYW R+ PY Y+ V DF GF SFH GQQ+AS+ RVPYDK++ HPA+LV
Sbjct: 456 EVTSKKDQEQYWNRREHPYSYVSVHDFSSGFNSFHAGQQLASEFRVPYDKAKTHPAALVT 515
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
+KYGIS +LF+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTVYFRTEM VG + G
Sbjct: 516 QKYGISNKDLFKACFDREWLLMKRNSFVYVFKTVQITIMSLIAMTVYFRTEMHVGTVQDG 575
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
+++GALFFSL+N+MFNG AE A TV+RLP+F+KQRD LFYP WAFALP +LL+IP+S++
Sbjct: 576 QKFYGALFFSLINLMFNGMAELAFTVMRLPVFFKQRDFLFYPPWAFALPGFLLKIPLSLI 635
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
+S IW+ALTYYTIG+ P+A+RFF+Q LA+F ++ M+L L+R + A+GRTEVI+N+ GT
Sbjct: 636 ESVIWIALTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGALGRTEVIANSGGTLA 695
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
LL++ LGGF+++KDDI +L W YY SPMMYGQT+L++NEFL RW + N D IN T
Sbjct: 696 LLVVFVLGGFIISKDDIPSWLTWCYYTSPMMYGQTALVINEFLDERWGSPNNDTRINAKT 755
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+G+VLLK RGF TE W+WI +GAL G++ NP+G+S +T + E+G+
Sbjct: 756 VGEVLLKSRGFFTEPYWFWICIGALLGFTVLFNFCYIIALMYLNPLGNSKATTVVEEGKD 815
Query: 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTE 873
+ H G + +S+ + G +GM+LPFQPLSL F+N++Y+VDMPAEMK +
Sbjct: 816 KHKGSHSGTGGSVVELTSTSSHGP-----KKGMVLPFQPLSLAFNNVNYYVDMPAEMKAQ 870
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933
GV DRLQLL V G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGGY+EG I ISGYPK
Sbjct: 871 GVEGDRLQLLRDVGGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYVEGSINISGYPK 930
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
NQ TFARVSGYCEQNDIHSP+VTVYESL+YSAWLRLS+D+DTK R+MFV+EVMELVELK
Sbjct: 931 NQATFARVSGYCEQNDIHSPHVTVYESLIYSAWLRLSADIDTKTREMFVEEVMELVELKP 990
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L +S+VGLPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 991 LRNSIVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1050
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIK 1113
DTGRTVVCTIHQPSIDIFE+FDELLL+KRGG+VIYAG LGH S KL+EYFEA+ GVPKIK
Sbjct: 1051 DTGRTVVCTIHQPSIDIFESFDELLLMKRGGQVIYAGTLGHHSQKLVEYFEAIEGVPKIK 1110
Query: 1114 EAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTK 1173
+ YNPATWML+V+ S+E+Q+ +DFA+++ +SS+++RN+ELIKELSTPPPGS+DLYF TK
Sbjct: 1111 DGYNPATWMLDVTTPSMESQMSVDFAQIFVNSSVNRRNQELIKELSTPPPGSNDLYFRTK 1170
Query: 1174 YSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQN 1233
Y+QPF TQ +ACFWK YWS WR PQYNAIRF MT+VI + FGL++W G K K+QDL N
Sbjct: 1171 YAQPFSTQTKACFWKMYWSNWRYPQYNAIRFLMTVVIGVLFGLLFWQTGTKIEKEQDLNN 1230
Query: 1234 LFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXX 1293
FGAMY+ +FLG +NA +V P + +ERTV+YRE+AAGM++A+PYA++QVA
Sbjct: 1231 FFGAMYAAVLFLGATNAATVQPAVAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQ 1290
Query: 1294 XXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFL 1353
+MIG+ W + KF F+Y+M F+ FTLYGMM+VALTP Q+A I LSFFL
Sbjct: 1291 TGVYTLILYSMIGYDWTVVKFFWFYYYMLTCFVYFTLYGMMLVALTPNYQIAGICLSFFL 1350
Query: 1354 SVWNLFSGFLVAR 1366
S WNLFSGFL+ R
Sbjct: 1351 SFWNLFSGFLIPR 1363
|
|
| TAIR|locus:2019693 ABCG39 "ATP-binding cassette G39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4934 (1741.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 913/1326 (68%), Positives = 1100/1326 (82%)
Query: 42 DNVFSRSER-QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDK 100
D VF RSER ++D+ ELRWAAIERLPT+DRL+KGML Q +GK+ ++D++ L +DK
Sbjct: 45 DEVFGRSERREEDDMELRWAAIERLPTFDRLRKGMLPQTSANGKIELEDIDLTRLEPKDK 104
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
K L+E IL VEEDNEKFL+ +R RTDRVGIE+PKIEVRY+++SVEGDV +RALPTL
Sbjct: 105 KHLMEMILSFVEEDNEKFLRDLRERTDRVGIEVPKIEVRYENISVEGDVRSASRALPTLF 164
Query: 161 NVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220
NV LN LES LG HL+PSK++ ++ILKD+SGIVKPSRMTLLLGPP +GKTTL+ ALAGK
Sbjct: 165 NVTLNTLESILGFFHLLPSKRKKIQILKDISGIVKPSRMTLLLGPPSSGKTTLLQALAGK 224
Query: 221 LGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE 280
L L+ SG+ITYCGHE EFVPQ+TCAYISQHDLH GEMTVRE LDFSGRCLGVG+RY+
Sbjct: 225 LDDTLQMSGRITYCGHEFREFVPQKTCAYISQHDLHFGEMTVREILDFSGRCLGVGSRYQ 284
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
L++ELSRREK+ GIKPDP+IDAFMK++A++GQETSLVTDYVLKILGLDICAD + GD MR
Sbjct: 285 LMSELSRREKEEGIKPDPKIDAFMKSIAISGQETSLVTDYVLKILGLDICADILAGDVMR 344
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RGISGGQKKR+TTGEMLVG A L+MDEISTGLDSSTTFQICKF++Q+VHI DVTMI++L
Sbjct: 345 RGISGGQKKRLTTGEMLVGPARALFMDEISTGLDSSTTFQICKFMRQLVHISDVTMIISL 404
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKD 460
LQPAPET++LFDDIILLSEGQIVYQGPRDNVLEFFE+ GF+CPERKGVADFLQEVTSKKD
Sbjct: 405 LQPAPETFELFDDIILLSEGQIVYQGPRDNVLEFFEYFGFQCPERKGVADFLQEVTSKKD 464
Query: 461 QEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISK 520
QEQYW ++ QPY Y+ VSDF GF +FH GQ++ S+ RVPYDK++ H A+LV +KYGIS
Sbjct: 465 QEQYWNKREQPYNYVSVSDFSSGFSTFHTGQKLTSEFRVPYDKAKTHSAALVTQKYGISN 524
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
WELF+ACF REWLLMKRNSFVY+FKT Q+T MSLI MTVY RTEM VG + G +++GA+
Sbjct: 525 WELFKACFDREWLLMKRNSFVYVFKTVQITIMSLITMTVYLRTEMHVGTVRDGQKFYGAM 584
Query: 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640
FFSL+N+MFNG AE A TV+RLP+FYKQRD LFYP WAFALP WLL+IP+S+++S IW+
Sbjct: 585 FFSLINVMFNGLAELAFTVMRLPVFYKQRDFLFYPPWAFALPAWLLKIPLSLIESGIWIG 644
Query: 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSL 700
LTYYTIG+ P+A+RFF+Q LA+F ++ M+L L+R + A+GRTEVISN++GTF LLI+ +L
Sbjct: 645 LTYYTIGFAPSAARFFRQLLAYFCVNQMALSLFRFLGAIGRTEVISNSIGTFTLLIVFTL 704
Query: 701 GGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLK 760
GGF++AKDDI P++ W YY+SPMMYGQT++++NEFL RW + N D IN T+G+VLLK
Sbjct: 705 GGFIIAKDDIRPWMTWAYYMSPMMYGQTAIVMNEFLDERWSSPNYDTRINAKTVGEVLLK 764
Query: 761 IRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASGHE 820
RGF TE W+WI + AL G+S NP+G+S +TV+EE +KQ+
Sbjct: 765 SRGFFTEPYWFWICIVALLGFSLLFNLFYILALMYLNPLGNSKATVVEEGKDKQKGENRG 824
Query: 821 AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRL 880
EG + + SSS G RGM+LPFQPLSL F+N++Y+VDMP+EMK +GV DRL
Sbjct: 825 TEGSVVELNSSSNK-GP-----KRGMVLPFQPLSLAFNNVNYYVDMPSEMKAQGVEGDRL 878
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
QLL V G FRPG+LTAL+GVSGAGKTTLMDVLAGRKTGGYIEG I ISGYPKNQ TFAR
Sbjct: 879 QLLRDVGGAFRPGILTALVGVSGAGKTTLMDVLAGRKTGGYIEGSISISGYPKNQTTFAR 938
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
VSGYCEQNDIHSP+VTVYESL+YSAWLRLS+D+D K R++FV+EVMELVELK L +S+VG
Sbjct: 939 VSGYCEQNDIHSPHVTVYESLIYSAWLRLSTDIDIKTRELFVEEVMELVELKPLRNSIVG 998
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
LPGV GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV
Sbjct: 999 LPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1058
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPAT 1120
CTIHQPSIDIFE+FDELLL+KRGG+VIYAG LGH S KL+EYFEAV GVPKI + YNPAT
Sbjct: 1059 CTIHQPSIDIFESFDELLLMKRGGQVIYAGSLGHHSQKLVEYFEAVEGVPKINDGYNPAT 1118
Query: 1121 WMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLT 1180
WML+V+ S+E+Q+ +DFA+++++SSL++RN+ELIK+LSTPPPGS D+YF TKY+Q F T
Sbjct: 1119 WMLDVTTPSMESQMSLDFAQIFSNSSLYRRNQELIKDLSTPPPGSKDVYFKTKYAQSFST 1178
Query: 1181 QFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYS 1240
Q +ACFWKQYWSYWR+PQYNAIRF MT+VI + FGLI+W G KT +QDL N FGAMY+
Sbjct: 1179 QTKACFWKQYWSYWRHPQYNAIRFLMTVVIGVLFGLIFWQIGTKTENEQDLNNFFGAMYA 1238
Query: 1241 ICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXX 1300
+FLG NA +V P I +ERTV+YRE+AAGM++A+PYA++QVA
Sbjct: 1239 AVLFLGALNAATVQPAIAIERTVFYREKAAGMYSAIPYAISQVAVEIMYNTIQTGVYTLI 1298
Query: 1301 XXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFS 1360
+MIG W + KF F+Y+M SFI FTLYGMM++ALTP Q+A I +SFFLS+WNLFS
Sbjct: 1299 LYSMIGCNWTMAKFLWFYYYMLTSFIYFTLYGMMLMALTPNYQIAGICMSFFLSLWNLFS 1358
Query: 1361 GFLVAR 1366
GFL+ R
Sbjct: 1359 GFLIPR 1364
|
|
| TAIR|locus:2196593 ABCG40 "ATP-binding cassette G40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4211 (1487.4 bits), Expect = 0., Sum P(2) = 0.
Identities = 800/1333 (60%), Positives = 1007/1333 (75%)
Query: 37 VWNAPDN--VFSRSERQ-DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVS 93
VW +FSRS R+ DDEE LRWAA+E+LPT+DRL+KG+L G + +E+D+
Sbjct: 19 VWKKDSGREIFSRSSREEDDEEALRWAALEKLPTFDRLRKGILTASHAGGPI--NEIDIQ 76
Query: 94 NLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT 153
L QD K+LLE ++K+ ++++EK L +++ R DRVGI++P IEVR+DHL VE +VHVG
Sbjct: 77 KLGFQDTKKLLERLIKVGDDEHEKLLWKLKKRIDRVGIDLPTIEVRFDHLKVEAEVHVGG 136
Query: 154 RALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTL 213
RALPT +N N + L LHLVP++K+ IL DVSGIVKP RM LLLGPP +GKTTL
Sbjct: 137 RALPTFVNFISNFADKFLNTLHLVPNRKKKFTILNDVSGIVKPGRMALLLGPPSSGKTTL 196
Query: 214 MLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCL 273
+LALAGKL ++L+ +G++TY GH +NEFVPQRT AYI Q+D+H GEMTVRET ++ R
Sbjct: 197 LLALAGKLDQELKQTGRVTYNGHGMNEFVPQRTAAYIGQNDVHIGEMTVRETFAYAARFQ 256
Query: 274 GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333
GVG+RY++L EL+RREK+A IKPDP+ID FMKA++ AG++T+++TDY+LKILGL++CADT
Sbjct: 257 GVGSRYDMLTELARREKEANIKPDPDIDIFMKAMSTAGEKTNVMTDYILKILGLEVCADT 316
Query: 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD 393
MVGD+M RGISGGQKKRVTTGEMLVG + L+MDEISTGLDSSTT+QI L+ VHI +
Sbjct: 317 MVGDDMLRGISGGQKKRVTTGEMLVGPSRALFMDEISTGLDSSTTYQIVNSLRNYVHIFN 376
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
T +++LLQPAPET++LFDDIIL++EG+I+Y+GPRD+V+EFFE MGFKCP RKGVADFLQ
Sbjct: 377 GTALISLLQPAPETFNLFDDIILIAEGEIIYEGPRDHVVEFFETMGFKCPPRKGVADFLQ 436
Query: 454 EVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVK 513
EVTSKKDQ QYW R+++PYR+I V +F E F+SFH+G++I +L +P+DK+++HPA+L
Sbjct: 437 EVTSKKDQMQYWARRDEPYRFIRVREFAEAFQSFHVGRRIGDELALPFDKTKSHPAALTT 496
Query: 514 EKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573
+KYG+ EL + F+RE+LLMKRNSFVY FK QL M+ + MT++FRTEM G
Sbjct: 497 KKYGVGIKELVKTSFSREYLLMKRNSFVYYFKFGQLLVMAFLTMTLFFRTEMQKKTEVDG 556
Query: 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISIL 633
S Y GALFF L+ +MFNG +E +MT+ +LP+FYKQRD LFYP+W ++LP WLL+IPIS +
Sbjct: 557 SLYTGALFFILMMLMFNGMSELSMTIAKLPVFYKQRDLLFYPAWVYSLPPWLLKIPISFM 616
Query: 634 DSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFI 693
++ + +TYY IG+DP R FKQ++ ++ M+ L+++VAA+GR +++NT G F
Sbjct: 617 EAALTTFITYYVIGFDPNVGRLFKQYILLVLMNQMASALFKMVAALGRNMIVANTFGAFA 676
Query: 694 LLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPT 753
+L+ +LGG V+++DDI+ + WGY+ISP+MYGQ ++L NEF G W ++ S T
Sbjct: 677 MLVFFALGGVVLSRDDIKKWWIWGYWISPIMYGQNAILANEFFGHSWSRAVENSS---ET 733
Query: 754 IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+G LK RGF + WYWIG GAL G+ N +G + + EE
Sbjct: 734 LGVTFLKSRGFLPHAYWYWIGTGALLGFVVLFNFGFTLALTFLNSLGKPQAVIAEEP--- 790
Query: 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTE 873
+ E E +Q A RS V A N RGM+LPF+P S+TFDN+ Y VDMP EM +
Sbjct: 791 ---ASDETE-LQSA-RSEG-VVEAGAN-KKRGMVLPFEPHSITFDNVVYSVDMPQEMIEQ 843
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933
G EDRL LL V+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI+G+I ISGYPK
Sbjct: 844 GTQEDRLVLLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIDGNITISGYPK 903
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
NQ+TFAR+SGYCEQ DIHSP+VTVYESL+YSAWLRL +VD KRK+F++EVMELVEL
Sbjct: 904 NQQTFARISGYCEQTDIHSPHVTVYESLVYSAWLRLPKEVDKNKRKIFIEEVMELVELTP 963
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L ++VGLPG SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV
Sbjct: 964 LRQALVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1023
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIK 1113
DTGRTVVCTIHQPSIDIFEAFDEL LLKRGG IY GPLGHES LI YFE++ G+ KI
Sbjct: 1024 DTGRTVVCTIHQPSIDIFEAFDELFLLKRGGEEIYVGPLGHESTHLINYFESIQGINKIT 1083
Query: 1114 EAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTK 1173
E YNPATWMLEVS S E LG+DFA+VY +S L++RNKELIKELS P PGS DLYFPT+
Sbjct: 1084 EGYNPATWMLEVSTTSQEAALGVDFAQVYKNSELYKRNKELIKELSQPAPGSKDLYFPTQ 1143
Query: 1174 YSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQN 1233
YSQ FLTQ A WKQ+WSYWRNP Y A+RF T+ IA+ FG ++WD G KT +QDL N
Sbjct: 1144 YSQSFLTQCMASLWKQHWSYWRNPPYTAVRFLFTIGIALMFGTMFWDLGGKTKTRQDLSN 1203
Query: 1234 LFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXX 1293
G+MY+ +FLG NA SV PV+ VERTV+YRE+AAGM++AMPYA AQV
Sbjct: 1204 AMGSMYTAVLFLGLQNAASVQPVVNVERTVFYREQAAGMYSAMPYAFAQVFIEIPYVLVQ 1263
Query: 1294 XXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFL 1353
AMIGF+W KF + +FM+ SF+ FT YGMM VA+TP +A++V S F
Sbjct: 1264 AIVYGLIVYAMIGFEWTAVKFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFY 1323
Query: 1354 SVWNLFSGFLVAR 1366
+WNLFSGFL+ R
Sbjct: 1324 GIWNLFSGFLIPR 1336
|
|
| TAIR|locus:2025931 PEN3 "PENETRATION 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4101 (1448.7 bits), Expect = 0., Sum P(2) = 0.
Identities = 789/1350 (58%), Positives = 1008/1350 (74%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQVLED----GKVVKHEVDV 92
+++FS R+ DDEE L+WAAIE+LPTY RL+ ++N V+ED +++ EVDV
Sbjct: 33 EDIFSSGSRRTQSVNDDEEALKWAAIEKLPTYSRLRTTLMNAVVEDDVYGNQLMSKEVDV 92
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
+ L +D+++ ++ + K+ E+DNE+ L ++R+R DRVGI++P +EVRY+HL+++ D + G
Sbjct: 93 TKLDGEDRQKFIDMVFKVAEQDNERILTKLRNRIDRVGIKLPTVEVRYEHLTIKADCYTG 152
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
R+LPTLLNV NM ESALG++ + +KK + ILKD+SG++KP RMTLLLGPP +GKTT
Sbjct: 153 NRSLPTLLNVVRNMGESALGMIGIQFAKKAQLTILKDISGVIKPGRMTLLLGPPSSGKTT 212
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAGKL K L+ SG ITY G++L+EFVP++T AYISQ+DLH G MTV+ETLDFS RC
Sbjct: 213 LLLALAGKLDKSLQVSGDITYNGYQLDEFVPRKTSAYISQNDLHVGIMTVKETLDFSARC 272
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVGTRY+LL EL+RREK AGI P+ ++D FMKA A G + SLVTDY LKILGLDIC D
Sbjct: 273 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKNSLVTDYTLKILGLDICKD 332
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGD+M RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTTFQI K L+Q+VH+
Sbjct: 333 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLN 392
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T++++LLQPAPET+DLFDDIIL+SEGQIVYQGPRDN+LEFFE GFKCPERKG ADFL
Sbjct: 393 EATVLMSLLQPAPETFDLFDDIILVSEGQIVYQGPRDNILEFFESFGFKCPERKGTADFL 452
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQEQYW N+PY YIPVS+F +KSFH+G +++++L VP+DKS+ H A+LV
Sbjct: 453 QEVTSKKDQEQYWVNPNRPYHYIPVSEFASRYKSFHVGTKMSNELAVPFDKSRGHKAALV 512
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+KY +SK EL ++C+ +EWLLM+RN+F Y+FKT Q+ ++ I T++ RTEM+ +
Sbjct: 513 FDKYSVSKRELLKSCWDKEWLLMQRNAFFYVFKTVQIVIIAAITSTLFLRTEMNTRNEGD 572
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
+ Y GAL F ++ MFNGFAE AM V RLP+FYKQRD LFYPSW F+LP +LL IP SI
Sbjct: 573 ANLYIGALLFGMIINMFNGFAEMAMMVSRLPVFYKQRDLLFYPSWTFSLPTFLLGIPSSI 632
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
L+ST W+ +TYY+IG+ P ASRFFKQFL F I M+ L+RL+A+V RT +I+NT G
Sbjct: 633 LESTAWMVVTYYSIGFAPDASRFFKQFLLVFLIQQMAASLFRLIASVCRTMMIANTGGAL 692
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
LL++ LGGF++ K I + W Y++SP+ Y L+VNE RW NK S N
Sbjct: 693 TLLLVFLLGGFLLPKGKIPDWWGWAYWVSPLTYAFNGLVVNEMFAPRW--MNKMASSNST 750
Query: 753 T-IGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDG 811
+G ++L + NWYWI VGAL ++ NP+G + EE+
Sbjct: 751 IKLGTMVLNTWDVYHQKNWYWISVGALLCFTALFNILFTLALTYLNPLGKKAGLLPEEEN 810
Query: 812 EK-------QRASGHEAEGMQ--------MAVRSSSKTVGAAQNVTNRGMILPFQPLSLT 856
E R S A+G + M+ S+++ G A N +GM+LPF PL+++
Sbjct: 811 EDADQGKDPMRRSLSTADGNRRGEVAMGRMSRDSAAEASGGAGN--KKGMVLPFTPLAMS 868
Query: 857 FDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916
FD++ YFVDMP EM+ +GV E RLQLL V+G FRPGVLTALMGVSGAGKTTLMDVLAGR
Sbjct: 869 FDDVKYFVDMPGEMRDQGVTETRLQLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGR 928
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
KTGGYIEGD++ISG+PK QETFAR+SGYCEQ DIHSP VTV ESL++SA+LRL +V
Sbjct: 929 KTGGYIEGDVRISGFPKVQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLPKEVGKD 988
Query: 977 KRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
++ MFVD+VMELVEL SL DS+VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSG
Sbjct: 989 EKMMFVDQVMELVELDSLRDSIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1048
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 1096
LDARAAAIVMR VRNTVDTGRTVVCTIHQPSIDIFEAFDEL+L+KRGG+VIYAGPLG S
Sbjct: 1049 LDARAAAIVMRAVRNTVDTGRTVVCTIHQPSIDIFEAFDELMLMKRGGQVIYAGPLGQNS 1108
Query: 1097 HKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIK 1156
HK++EYFE+ PGV KI E YNPATWMLE S+++ E +L +DFAE+Y S+LHQRNK L+K
Sbjct: 1109 HKVVEYFESFPGVSKIPEKYNPATWMLEASSLAAELKLSVDFAELYNQSALHQRNKALVK 1168
Query: 1157 ELSTPPPGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGL 1216
ELS PP G+SDLYF T++SQ QF++C WKQ+W+YWR+P YN +RF TL ++ G
Sbjct: 1169 ELSVPPAGASDLYFATQFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLLIGT 1228
Query: 1217 IYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAM 1276
++W G S DL + GA+Y+ IF+G +N +V P++ VERTV+YRERAAGM++AM
Sbjct: 1229 VFWQIGGNRSNAGDLTMVIGALYAAIIFVGINNCSTVQPMVAVERTVFYRERAAGMYSAM 1288
Query: 1277 PYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIV 1336
PYA++QV AM+GF+W+ KF F + + SF+ +T YGMM V
Sbjct: 1289 PYAISQVTCELPYVLIQTVYYSLIVYAMVGFEWKAEKFFWFVFVSYFSFLYWTYYGMMTV 1348
Query: 1337 ALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
+LTP QQVA+I S F ++NLFSGF + R
Sbjct: 1349 SLTPNQQVASIFASAFYGIFNLFSGFFIPR 1378
|
|
| TAIR|locus:2037703 ABCG35 "ATP-binding cassette G35" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 4060 (1434.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 766/1334 (57%), Positives = 999/1334 (74%)
Query: 42 DNVFSRSERQ-----DDEEELRWAAIERLPTYDRLKKGMLNQVLED----GKVVKHEVDV 92
+++F+ S R+ +DEE L+WA+IE+LPTY+RL+ ++ ++ ED +++ VDV
Sbjct: 31 EDIFNTSSRRTKSVNEDEEALKWASIEKLPTYNRLRTSLMPELGEDDVYGNQILNKAVDV 90
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
+ L +++++ ++ + K+ E+DNE+ L ++R+R DRVGI++P +EVRYDHL+V+ D + G
Sbjct: 91 TKLDGEERQKFIDMVFKVAEQDNERILTKLRNRIDRVGIQLPTVEVRYDHLTVKADCYTG 150
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
R+LP+LLN NM E+ALG++ + +KK + ILKDVSGIVKPSRMTLLLGPP +GKTT
Sbjct: 151 DRSLPSLLNAVRNMGEAALGMIGIRLAKKAQLTILKDVSGIVKPSRMTLLLGPPSSGKTT 210
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAGKL K L SG++TY G+ LNEFVP +T AYISQ+DLH G MTV+ETLDFS RC
Sbjct: 211 LLLALAGKLDKSLDVSGEVTYNGYRLNEFVPIKTSAYISQNDLHVGIMTVKETLDFSARC 270
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVGTRY+LL EL+RREK AGI P+ ++D FMKA A G ++SL+TDY LKILGLDIC D
Sbjct: 271 QGVGTRYDLLNELARREKDAGIFPEADVDLFMKASAAQGVKSSLITDYTLKILGLDICKD 330
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGD+M RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTTFQI K L+Q+VH+
Sbjct: 331 TIVGDDMMRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTFQIVKCLQQIVHLT 390
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T++++LLQPAPET+DLFDDIILLSEGQIVYQGPRD++LEFFE GFKCPERKG ADFL
Sbjct: 391 EATVLISLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESFGFKCPERKGTADFL 450
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQEQYW N+PYRYIPVS+F FK FH+G +++++L VPYDKS++H A+L+
Sbjct: 451 QEVTSKKDQEQYWVDPNRPYRYIPVSEFASSFKKFHVGSKLSNELSVPYDKSKSHKAALM 510
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+KY I K EL ++C+ +EW+LMKRNSF Y+FKT Q+ ++ I T+Y RTEM +
Sbjct: 511 FDKYSIKKTELLKSCWDKEWMLMKRNSFFYVFKTVQIIIIAAITSTLYLRTEMHTRNEID 570
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
+ Y G+L F+++ MFNG AE AMT+ RLP+FYKQRD LF+P W + LP +LL IPISI
Sbjct: 571 ANIYVGSLLFAMIVNMFNGLAEMAMTIQRLPVFYKQRDLLFHPPWTYTLPTFLLGIPISI 630
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
+ST W+ +TYY+IGY P A RFFKQFL F I M+ ++R +A+ RT I+NT G
Sbjct: 631 FESTAWMVVTYYSIGYAPDAERFFKQFLIIFLIQQMAAGIFRFIASTCRTMTIANTGGVL 690
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+LL++ GGF++ + +I + RW Y+ISP+ Y ++ VNE RW NK +
Sbjct: 691 VLLVVFLTGGFLLPRSEIPVWWRWAYWISPLSYAFNAITVNELFAPRW--MNKMSGNSTT 748
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGE 812
+G +L I + NWYWIGVG L G++ +P+G + + + +E+ E
Sbjct: 749 RLGTSVLNIWDVFDDKNWYWIGVGGLLGFTVIFNGFFTLALTYLDPLGKAQAILPKEEDE 808
Query: 813 KQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKT 872
+ A G + + S S +GM+LPF PL+++FD++ YFVDMPAEM+
Sbjct: 809 E--AKGKAGSNKETEMESVS---------AKKGMVLPFTPLAMSFDDVKYFVDMPAEMRE 857
Query: 873 EGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932
+GV E RLQLL V+ FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD+++SG+P
Sbjct: 858 QGVQETRLQLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDVRVSGFP 917
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
K QETFAR+SGYCEQ DIHSP VTV ESL++SA+LRL+ +V + + MFVD+VMELVEL
Sbjct: 918 KKQETFARISGYCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELV 977
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L D++VGLPGV+GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR VRNT
Sbjct: 978 DLRDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNT 1037
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKI 1112
VDTGRTVVCTIHQPSIDIFEAFDELLL+KRGG VIY+GPLG SHK++EYFE+ PGVPKI
Sbjct: 1038 VDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKI 1097
Query: 1113 KEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPT 1172
E YNPATWMLE S+++ E +LG+DFAE+Y S+L QRNK L++ELS PP G++DLYF T
Sbjct: 1098 PEKYNPATWMLEASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFAT 1157
Query: 1173 KYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQ 1232
++SQ QF++C WKQ+W+YWR+P YN +RF TL ++ G ++W G K S QDL
Sbjct: 1158 QFSQNTWGQFKSCLWKQWWTYWRSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLT 1217
Query: 1233 NLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXX 1292
+ GA+Y+ +F+G +N +V P++ VERTV+YRE+AAGM++A+PYA++QV
Sbjct: 1218 MVIGAIYAAVVFVGINNCSTVQPMVAVERTVFYREKAAGMYSAIPYAISQVTCELPYVLI 1277
Query: 1293 XXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFF 1352
+M+GF+W+ KF F + + SF+ +T YGMM V+LTP QQVA+I S F
Sbjct: 1278 QTTYYSLIIYSMVGFEWKASKFLWFIFINYFSFLYWTYYGMMTVSLTPNQQVASIFASAF 1337
Query: 1353 LSVWNLFSGFLVAR 1366
++NLFSGF + R
Sbjct: 1338 YGIFNLFSGFFIPR 1351
|
|
| TAIR|locus:2039523 ABCG32 "ATP-binding cassette G32" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3879 (1370.5 bits), Expect = 0., Sum P(2) = 0.
Identities = 734/1334 (55%), Positives = 976/1334 (73%)
Query: 37 VWNAPDNVFSRS----ERQDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDV 92
+WN+ +N FSRS + +DEEELRWAA++RLPTY R+++G+ ++ + K E+ +
Sbjct: 1 MWNSAENAFSRSTSFKDEIEDEEELRWAALQRLPTYSRIRRGIFRDMVGEPK----EIQI 56
Query: 93 SNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152
NL +++ LL+ ++ VE D E+F R+R R D V ++ PKIEVR+ +L VE VHVG
Sbjct: 57 GNLEASEQRLLLDRLVNSVENDPEQFFARVRKRFDAVDLKFPKIEVRFQNLMVESFVHVG 116
Query: 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212
+RALPT+ N +NM E L +H++ K+ + IL +SG+++PSR+TLLLGPP +GKTT
Sbjct: 117 SRALPTIPNFIINMAEGLLRNIHVIGGKRNKLTILDGISGVIRPSRLTLLLGPPSSGKTT 176
Query: 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRC 272
L+LALAG+LG +L+ SGKITY G++L E + RT AY+SQ D H EMTVR+TL+F+GRC
Sbjct: 177 LLLALAGRLGTNLQTSGKITYNGYDLKEIIAPRTSAYVSQQDWHVAEMTVRQTLEFAGRC 236
Query: 273 LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332
GVG +Y++L EL+RREK AGI PD ++D FMK++A+ G ETSLV +YV+KILGLD CAD
Sbjct: 237 QGVGFKYDMLLELARREKLAGIVPDEDLDIFMKSLALGGMETSLVVEYVMKILGLDTCAD 296
Query: 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392
T+VGDEM +GISGGQKKR+TTGE+LVG A VL+MDEIS GLDSSTT QI +++ H L
Sbjct: 297 TLVGDEMIKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTHQIIMYMRHSTHAL 356
Query: 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ T +++LLQP+PETY+LFDD+IL+SEGQI+YQGPRD VL+FF +GF CP+RK VADFL
Sbjct: 357 EGTTVISLLQPSPETYELFDDVILMSEGQIIYQGPRDEVLDFFSSLGFTCPDRKNVADFL 416
Query: 453 QEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLV 512
QEVTSKKDQ+QYW +PYRY+P F E F+S+ G+++A L VP+DK H A+L
Sbjct: 417 QEVTSKKDQQQYWSVPFRPYRYVPPGKFAEAFRSYPTGKKLAKKLEVPFDKRFNHSAALS 476
Query: 513 KEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572
+YG+ K EL + FA + LMK+N+F+Y+FK QL ++LI MTV+ RT M ++
Sbjct: 477 TSQYGVKKSELLKINFAWQKQLMKQNAFIYVFKFVQLLLVALITMTVFCRTTMHHNTIDD 536
Query: 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632
G+ Y G+L+FS++ I+FNGF E M V +LP+ YK RD FYPSWA+ LP WLL IP SI
Sbjct: 537 GNIYLGSLYFSMVIILFNGFTEVPMLVAKLPVLYKHRDLHFYPSWAYTLPSWLLSIPTSI 596
Query: 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTF 692
++S WVA+TYYTIGYDP SRF +QFL +FS+H MSL L+R++ ++GR +++NT G+F
Sbjct: 597 IESATWVAVTYYTIGYDPLFSRFLQQFLLYFSLHQMSLGLFRVMGSLGRHMIVANTFGSF 656
Query: 693 ILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752
+L++M+LGGF++++D I + WGY+ISP+MY Q + VNEFLG W Q +
Sbjct: 657 AMLVVMTLGGFIISRDSIPSWWIWGYWISPLMYAQNAASVNEFLGHNW--QKTAGNHTSD 714
Query: 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGE 812
++G LLK R + + WYWIGV AL GY+ NP G + V E+ +
Sbjct: 715 SLGLALLKERSLFSGNYWYWIGVAALLGYTVLFNILFTLFLAHLNPWGKFQAVVSREELD 774
Query: 813 KQRASGHEAEGMQMAVRSSSKTVGAAQN--VTNRGMILPFQPLSLTFDNMSYFVDMPAEM 870
+R + + + +R + G+ NRGM+LPFQPLSL+F N++Y+VD+P +
Sbjct: 775 -EREKKRKGDEFVVELREYLQHSGSIHGKYFKNRGMVLPFQPLSLSFSNINYYVDVPLGL 833
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930
K +G+ EDRLQLL +++G FRPGVLTAL+GVSGAGKTTLMDVLAGRKTGG IEGD+ ISG
Sbjct: 834 KEQGILEDRLQLLVNITGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGTIEGDVYISG 893
Query: 931 YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+PK QETFAR+SGYCEQND+HSP +TV ESLL+SA LRL +D+D++ ++ FV EVMELVE
Sbjct: 894 FPKRQETFARISGYCEQNDVHSPCLTVVESLLFSACLRLPADIDSETQRAFVHEVMELVE 953
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L SL+ ++VGLPGV GLSTEQRKRLTIAVELVANPSI+FMDEPTSGLDARAAAIVMRTVR
Sbjct: 954 LTSLSGALVGLPGVDGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1013
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVP 1110
N V+TGRT+VCTIHQPSIDIFE+FDELL +KRGG +IYAGPLG +S +LI+YFE++ GV
Sbjct: 1014 NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGQKSCELIKYFESIEGVQ 1073
Query: 1111 KIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYF 1170
KIK +NPA WML+V+ + E++LG+DFAE+Y +S+L QRNKELI+ LS P + ++ F
Sbjct: 1074 KIKPGHNPAAWMLDVTASTEEHRLGVDFAEIYRNSNLCQRNKELIEVLSKPSNIAKEIEF 1133
Query: 1171 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQD 1230
PT+YSQ +QF AC WKQ SYWRNPQY A+RF T+VI++ G I W G K QQ
Sbjct: 1134 PTRYSQSLYSQFVACLWKQNLSYWRNPQYTAVRFFYTVVISLMLGTICWKFGSKRDTQQQ 1193
Query: 1231 LQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXX 1290
L N G+MY+ +F+G +NA + PV+ +ER V YRERAAGM++A+P+A AQV
Sbjct: 1194 LFNAMGSMYAAVLFIGITNATAAQPVVSIERFVSYRERAAGMYSALPFAFAQVFIEFPYV 1253
Query: 1291 XXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLS 1350
AM F+W KF + +FM+ S + FT YGMM A+TP VA+I+ +
Sbjct: 1254 LAQSTIYSTIFYAMAAFEWSAVKFLWYLFFMYFSIMYFTFYGMMTTAITPNHNVASIIAA 1313
Query: 1351 FFLSVWNLFSGFLV 1364
F +WNLFSGF++
Sbjct: 1314 PFYMLWNLFSGFMI 1327
|
|
| TAIR|locus:2049867 ABCG33 "ATP-binding cassette G33" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3531 (1248.0 bits), Expect = 0., P = 0.
Identities = 680/1328 (51%), Positives = 925/1328 (69%)
Query: 46 SRSERQD--DEEE--LRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKK 101
SR+E +D DE E L+WA I+RLPT+ RL+ ++++ E + K VDV+ L ++
Sbjct: 10 SRNEHEDGGDEAEHALQWAEIQRLPTFKRLRSSLVDKYGEGTEKGKKVVDVTKLGAMERH 69
Query: 102 RLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT-RALPTLL 160
++E ++K +E DN K LK+IR R +RVG+E P IEVRY+HL VE V +ALPTL
Sbjct: 70 LMIEKLIKHIENDNLKLLKKIRRRMERVGVEFPSIEVRYEHLGVEAACEVVEGKALPTLW 129
Query: 161 NVALNMLESALGLLHL--VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALA 218
N ++ L LL L V + + +++IL DVSGI+ P R+TLLLGPPG GKTTL+ AL+
Sbjct: 130 NSLKHVF---LDLLKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALS 186
Query: 219 GKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR 278
G L +L+ G+I+Y GH LNE VPQ+T AYISQHDLH EMT RET+DFS RC GVG+R
Sbjct: 187 GNLENNLKCYGEISYNGHGLNEVVPQKTSAYISQHDLHIAEMTTRETIDFSARCQGVGSR 246
Query: 279 YELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338
+++ E+S+REK GI PDPEIDA+MKA++V G + SL TDY+LKILGLDICA+T+VG+
Sbjct: 247 TDIMMEVSKREKDGGIIPDPEIDAYMKAISVKGLKRSLQTDYILKILGLDICAETLVGNA 306
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
M+RGISGGQKKR+TT EM+VG L+MDEI+ GLDSST FQI K L+Q+ HI + T+ V
Sbjct: 307 MKRGISGGQKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIIKSLQQVAHITNATVFV 366
Query: 399 ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSK 458
+LLQPAPE+YDLFDDI+L++EG+IVY GPRD+VL+FFE GF+CPERKGVADFLQEV SK
Sbjct: 367 SLLQPAPESYDLFDDIVLMAEGKIVYHGPRDDVLKFFEECGFQCPERKGVADFLQEVISK 426
Query: 459 KDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGI 518
KDQ QYW +N P+ ++ V + FK +G++I L PYD S+ H +L Y +
Sbjct: 427 KDQGQYWLHQNLPHSFVSVDTLSKRFKDLEIGRKIEEALSKPYDISKTHKDALSFNVYSL 486
Query: 519 SKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578
KWELFRAC +RE+LLMKRN FVY+FKTFQL ++I MTV+ RT M + ++G S Y
Sbjct: 487 PKWELFRACISREFLLMKRNYFVYLFKTFQLVLAAIITMTVFIRTRMDIDIIHGNS-YMS 545
Query: 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIW 638
LFF+ + ++ +G E +MTV RL +FYKQ+ FYP+WA+A+P +L+IP+S +S +W
Sbjct: 546 CLFFATVVLLVDGIPELSMTVQRLSVFYKQKQLCFYPAWAYAIPATVLKIPLSFFESLVW 605
Query: 639 VALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMM 698
LTYY IGY P RFF+QF+ F++H S+ ++R +AA+ +T V + T G+F++LI
Sbjct: 606 TCLTYYVIGYTPEPYRFFRQFMILFAVHFTSISMFRCIAAIFQTGVAAMTAGSFVMLITF 665
Query: 699 SLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVL 758
GF + D+ +L+WG++++P+ Y + L VNEFL RW Q P+ T+G+ +
Sbjct: 666 VFAGFAIPYTDMPGWLKWGFWVNPISYAEIGLSVNEFLAPRW--QKMQPT--NVTLGRTI 721
Query: 759 LKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASG 818
L+ RG + + YW+ + AL G + S + ++ + + +
Sbjct: 722 LESRGLNYDDYMYWVSLSALLGLTIIFNTIFTLALSFLKSPTSSRPMISQDKLSELQGTK 781
Query: 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGED 878
+ + SS KT N MILPF+PL++TF +++Y+VD+P EMK +G E
Sbjct: 782 DSSVKKNKPLDSSIKT-----NEDPGKMILPFKPLTITFQDLNYYVDVPVEMKGQGYNEK 836
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+LQLL ++G FRPGVLTALMG+SGAGKTTL+DVLAGRKT GYIEG+I+ISG+ K QETF
Sbjct: 837 KLQLLSEITGAFRPGVLTALMGISGAGKTTLLDVLAGRKTSGYIEGEIRISGFLKVQETF 896
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
ARVSGYCEQ DIHSP +TV ESL+YSAWLRL +++ + + FV +V+E +EL+ + D++
Sbjct: 897 ARVSGYCEQTDIHSPSITVEESLIYSAWLRLVPEINPQTKIRFVKQVLETIELEEIKDAL 956
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
VG+ GVSGLSTEQRKRLT+AVELVANPSIIFMDEPT+GLDARAAAIVMR V+N +TGRT
Sbjct: 957 VGVAGVSGLSTEQRKRLTVAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVAETGRT 1016
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNP 1118
+VCTIHQPSI IFEAFDEL+LLKRGGR+IY+GPLG S +IEYF+ +PGV KI++ YNP
Sbjct: 1017 IVCTIHQPSIHIFEAFDELVLLKRGGRMIYSGPLGQHSSCVIEYFQNIPGVAKIRDKYNP 1076
Query: 1119 ATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPF 1178
ATWMLEV++ SVE +L +DFA++Y +S L++ N EL+KELS P GSSDL+F ++Q +
Sbjct: 1077 ATWMLEVTSESVETELDMDFAKIYNESDLYKNNSELVKELSKPDHGSSDLHFKRTFAQNW 1136
Query: 1179 LTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAM 1238
QF++C WK SYWR+P YN +R G T + + FGL++W++G+K QQ+L + GA+
Sbjct: 1137 WEQFKSCLWKMSLSYWRSPSYNLMRIGHTFISSFIFGLLFWNQGKKIDTQQNLFTVLGAI 1196
Query: 1239 YSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXX 1298
Y + +F+G +N S + ER V YRER AGM++A YALAQV
Sbjct: 1197 YGLVLFVGINNCTSALQYFETERNVMYRERFAGMYSAFAYALAQVVTEIPYIFIQSAEFV 1256
Query: 1299 XXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNL 1358
MIGF K Y M+ + + F M ++++TP VA I+ S F + +N+
Sbjct: 1257 IVIYPMIGFYASFSKVFWSLYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNI 1316
Query: 1359 FSGFLVAR 1366
F+GFL+ +
Sbjct: 1317 FAGFLIPK 1324
|
|
| TAIR|locus:2084081 ABCG37 "ATP-binding cassette G37" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3512 (1241.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 685/1321 (51%), Positives = 913/1321 (69%)
Query: 52 DDEEELRWAAIERLPTYDRLKKGMLNQ----VLEDGKVVKHEVDVSNLAVQDKKRLLESI 107
D E L+WA IERLPT R++ +L+ + E G+ V VDV+ L ++ ++E +
Sbjct: 54 DAEYALQWAEIERLPTVKRMRSTLLDDGDESMTEKGRRV---VDVTKLGAVERHLMIEKL 110
Query: 108 LKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGT-RALPTLLNVALNM 166
+K +E DN K LK+IR R DRVG+E+P IEVRY+ L V + V +ALPTL N A +
Sbjct: 111 IKHIENDNLKLLKKIRRRIDRVGMELPTIEVRYESLKVVAECEVVEGKALPTLWNTAKRV 170
Query: 167 LESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR 226
L S L L + + + I+ DV+GI+KP R+TLLLGPP GKTTL+ AL+G L +L+
Sbjct: 171 L-SELVKLTGAKTHEAKINIINDVNGIIKPGRLTLLLGPPSCGKTTLLKALSGNLENNLK 229
Query: 227 ASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
SG+I+Y GH L+EFVPQ+T AYISQ+DLH EMTVRET+DFS RC GVG+R +++ E+S
Sbjct: 230 CSGEISYNGHRLDEFVPQKTSAYISQYDLHIAEMTVRETVDFSARCQGVGSRTDIMMEVS 289
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+REK+ GI PD E+DA+MKA++V G + SL TDY+LKILGLDICA+ ++GD MRRGISGG
Sbjct: 290 KREKEKGIIPDTEVDAYMKAISVEGLQRSLQTDYILKILGLDICAEILIGDVMRRGISGG 349
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
QKKR+TT EM+VG L+MDEI+ GLDSST FQI K L+Q HI T++V+LLQPAPE
Sbjct: 350 QKKRLTTAEMIVGPTKALFMDEITNGLDSSTAFQIVKSLQQFAHISSATVLVSLLQPAPE 409
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWF 466
+YDLFDDI+L+++G+IVY GPR VL FFE GF+CPERKGVADFLQEV SKKDQ QYW+
Sbjct: 410 SYDLFDDIMLMAKGRIVYHGPRGEVLNFFEDCGFRCPERKGVADFLQEVISKKDQAQYWW 469
Query: 467 RKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRA 526
++ PY ++ V + FK +G++I L PYD+S++H +L Y + WELF A
Sbjct: 470 HEDLPYSFVSVEMLSKKFKDLSIGKKIEDTLSKPYDRSKSHKDALSFSVYSLPNWELFIA 529
Query: 527 CFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLN 586
C +RE+LLMKRN FVYIFKT QL + I MTV+ RT M + ++G S Y ALFF+L+
Sbjct: 530 CISREYLLMKRNYFVYIFKTAQLVMAAFITMTVFIRTRMGIDIIHGNS-YMSALFFALII 588
Query: 587 IMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTI 646
++ +GF E +MT RL +FYKQ+ FYP+WA+A+P +L++P+S +S +W L+YY I
Sbjct: 589 LLVDGFPELSMTAQRLAVFYKQKQLCFYPAWAYAIPATVLKVPLSFFESLVWTCLSYYVI 648
Query: 647 GYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMA 706
GY P ASRFFKQF+ F++H S+ ++R +AA+ +T V S T G+F +L GFV+
Sbjct: 649 GYTPEASRFFKQFILLFAVHFTSISMFRCLAAIFQTVVASITAGSFGILFTFVFAGFVIP 708
Query: 707 KDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFST 766
+ +L+WG++ +P+ YG+ L VNEFL RW+ P N T+G+ +L+ RG
Sbjct: 709 PPSMPAWLKWGFWANPLSYGEIGLSVNEFLAPRWNQMQ--P--NNFTLGRTILQTRGMDY 764
Query: 767 ESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRASGHEAEGMQM 826
YW+ + AL G++ S+ +I +D + G E
Sbjct: 765 NGYMYWVSLCALLGFTVLFNIIFTLALTFLKS-PTSSRAMISQD-KLSELQGTEKSTEDS 822
Query: 827 AVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSV 886
+VR + T + M+LPF+PL++TF +++YFVDMP EM+ +G + +LQLL +
Sbjct: 823 SVRKKT-TDSPVKTEEEDKMVLPFKPLTVTFQDLNYFVDMPVEMRDQGYDQKKLQLLSDI 881
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE 946
+G FRPG+LTALMGVSGAGKTTL+DVLAGRKT GYIEGDI+ISG+PK QETFARVSGYCE
Sbjct: 882 TGAFRPGILTALMGVSGAGKTTLLDVLAGRKTSGYIEGDIRISGFPKVQETFARVSGYCE 941
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q DIHSP +TV ES++YSAWLRL+ ++D + FV +V+E +EL + DS+VG+ GVSG
Sbjct: 942 QTDIHSPNITVEESVIYSAWLRLAPEIDATTKTKFVKQVLETIELDEIKDSLVGVTGVSG 1001
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LSTEQRKRLTIAVELVANPSIIFMDEPT+GLDARAAAIVMR V+N DTGRT+VCTIHQP
Sbjct: 1002 LSTEQRKRLTIAVELVANPSIIFMDEPTTGLDARAAAIVMRAVKNVADTGRTIVCTIHQP 1061
Query: 1067 SIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVS 1126
SIDIFEAFDEL+LLKRGGR+IY GPLG S +IEYFE+VP +PKIK+ +NPATWML+VS
Sbjct: 1062 SIDIFEAFDELVLLKRGGRMIYTGPLGQHSRHIIEYFESVPEIPKIKDNHNPATWMLDVS 1121
Query: 1127 NISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACF 1186
+ SVE +LG+DFA++Y DS+L++RN EL+K+LS P GSSD+ F ++Q + QF++
Sbjct: 1122 SQSVEIELGVDFAKIYHDSALYKRNSELVKQLSQPDSGSSDIQFKRTFAQSWWGQFKSIL 1181
Query: 1187 WKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLG 1246
WK SYWR+P YN +R TLV ++ FG ++W +GQ QQ + +FGA+Y + +FLG
Sbjct: 1182 WKMNLSYWRSPSYNLMRMMHTLVSSLIFGALFWKQGQNLDTQQSMFTVFGAIYGLVLFLG 1241
Query: 1247 TSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIG 1306
+N S + ER V YRER AGM++A YAL QV MIG
Sbjct: 1242 INNCASALQYFETERNVMYRERFAGMYSATAYALGQVVTEIPYIFIQAAEFVIVTYPMIG 1301
Query: 1307 FKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
F K Y M+ S + F M +V++TP VA I+ S F +NLFSGFL+ +
Sbjct: 1302 FYPSAYKVFWSLYSMFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIPQ 1361
Query: 1367 S 1367
+
Sbjct: 1362 T 1362
|
|
| TAIR|locus:2045683 ABCG31 "ATP-binding cassette G31" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2056 (728.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 387/773 (50%), Positives = 539/773 (69%)
Query: 51 QDDEEELRWAAIERLP-----TYDRLKKGMLNQV----LEDGKVVKHEVDVSNLAVQDKK 101
+ DEE+LRWAAI RLP T++ + + Q DG VV+ +DV L D++
Sbjct: 32 EQDEEDLRWAAIGRLPSQRQGTHNAILRRSQTQTQTSGYADGNVVQ-TIDVKKLDRADRE 90
Query: 102 RLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLN 161
L+ L ++DN K L I+ R DRVG+E+PKIEVR+++L++E DV GTRALPTL+N
Sbjct: 91 MLVRQALATSDQDNFKLLSAIKERLDRVGMEVPKIEVRFENLNIEADVQAGTRALPTLVN 150
Query: 162 VALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
V+ + E L L ++ +K + ILKD+SGI+KP RMTLLLGPPG+GK+TL+LALAGKL
Sbjct: 151 VSRDFFERCLSSLRIIKPRKHKLNILKDISGIIKPGRMTLLLGPPGSGKSTLLLALAGKL 210
Query: 222 GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE- 280
K L+ +G ITY G LN+F +RT AYISQ D H E+TVRETLDF+ RC G +
Sbjct: 211 DKSLKKTGNITYNGENLNKFHVKRTSAYISQTDNHIAELTVRETLDFAARCQGASEGFAG 270
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
+ +L+R EK+ GI+P EIDAFMKA +V G++ S+ TDYVLK+LGLD+C+DTMVG++M
Sbjct: 271 YMKDLTRLEKERGIRPSSEIDAFMKAASVKGEKHSVSTDYVLKVLGLDVCSDTMVGNDMM 330
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RG+SGGQ+KRVTTGEM VG L+MDEISTGLDSSTTFQI K ++ VH++D T+++AL
Sbjct: 331 RGVSGGQRKRVTTGEMTVGPRKTLFMDEISTGLDSSTTFQIVKCIRNFVHLMDATVLMAL 390
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKD 460
LQPAPET+DLFDD+ILLSEG +VYQGPR++V+ FFE +GF+ P RKGVADFLQEVTSKKD
Sbjct: 391 LQPAPETFDLFDDLILLSEGYMVYQGPREDVIAFFESLGFRLPPRKGVADFLQEVTSKKD 450
Query: 461 QEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISK 520
Q QYW ++PY++IPVSD F++ G S L P+DK A P++L + K+ IS
Sbjct: 451 QAQYWADPSKPYQFIPVSDIAAAFRNSKYGHAADSKLAAPFDKKSADPSALCRTKFAISG 510
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
WE + CF RE LL+KR+ F+Y F+T Q+ F+ L+ TV+ +T + G+ Y L
Sbjct: 511 WENLKVCFVRELLLIKRHKFLYTFRTCQVGFVGLVTATVFLKTRLHPTSEQFGNEYLSCL 570
Query: 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640
FF L+++MFNGF+E + + RLP+FYKQRD+ F+P+W++++ WLLR+P S+L++ +W
Sbjct: 571 FFGLVHMMFNGFSELPLMISRLPVFYKQRDNSFHPAWSWSIASWLLRVPYSVLEAVVWSG 630
Query: 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSL 700
+ Y+T+G P+A RFF+ L FS+H M+L L+R++A++ R VI+NT G+ +LI+ L
Sbjct: 631 VVYFTVGLAPSAGRFFRYMLLLFSVHQMALGLFRMMASLARDMVIANTFGSAAILIVFLL 690
Query: 701 GGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLK 760
GGFV+ K DI+P+ WG+++SP+ YGQ ++ VNEF RW + +I+ TIG LLK
Sbjct: 691 GGFVIPKADIKPWWVWGFWVSPLSYGQRAIAVNEFTATRWMTPS---AISDTTIGLNLLK 747
Query: 761 IRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEK 813
+R F T WYWIG+ L GY+ NP+ + + V+++ E+
Sbjct: 748 LRSFPTNDYWYWIGIAVLIGYAILFNNVVTLALAYLNPLRKARAVVLDDPNEE 800
|
|
| TAIR|locus:2094952 ABCG29 "ATP-binding cassette G29" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2218 (785.8 bits), Expect = 1.4e-231, Sum P(2) = 1.4e-231
Identities = 468/973 (48%), Positives = 645/973 (66%)
Query: 42 DNVFSR---SERQD-DEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAV 97
+N FSR S D DEE L+WAA+E+LPT+ RL+ +++ ED VDV+ L V
Sbjct: 21 NNHFSRRSGSTIDDHDEEALKWAALEKLPTFARLRTTIIHPH-ED------LVDVTKLGV 73
Query: 98 QDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALP 157
D+++ ++SI K+ EEDNEKFLK+ R+R DRV I++P +EVR++ +++E + H+G RALP
Sbjct: 74 DDRQKFIDSIFKVTEEDNEKFLKKFRNRIDRVRIKLPTVEVRFEKVTIEANCHIGKRALP 133
Query: 158 TLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL 217
TL N ALN+ E L LL +K V IL+DVSGI+KPSRMTLLLGPP +GKTTL+LAL
Sbjct: 134 TLPNAALNIAERGLRLLGFNFTKTTKVTILRDVSGIIKPSRMTLLLGPPSSGKTTLLLAL 193
Query: 218 AGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277
AGKL + L+ +G++TY GH L EFVPQ+T AYISQ+D+H G MTV+ETLDFS RC GVGT
Sbjct: 194 AGKLDQSLKVTGRVTYNGHGLEEFVPQKTSAYISQNDVHVGVMTVQETLDFSARCQGVGT 253
Query: 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337
RY+LL+EL RREK AGI P+PE+D FMK++A ++SL+TDY L+ILGLDIC DT+VGD
Sbjct: 254 RYDLLSELVRREKDAGILPEPEVDLFMKSIAAGNVKSSLITDYTLRILGLDICKDTVVGD 313
Query: 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
EM RGISGGQKKRVTTGEM+VG L+MDEISTGLDSSTT+QI K L+++V D T++
Sbjct: 314 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQEIVRFTDATVL 373
Query: 398 VALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457
++LLQPAPET++LFDDIILLSEGQIVYQGPRD+VL FFE GFKCP+RKG ADFLQEVTS
Sbjct: 374 MSLLQPAPETFELFDDIILLSEGQIVYQGPRDHVLTFFETCGFKCPDRKGTADFLQEVTS 433
Query: 458 KKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYG 517
+KDQEQYW +PY YI VS+F + F++FH+G + DL VPYD+ ++HPASLV +K+
Sbjct: 434 RKDQEQYWADSKKPYSYISVSEFSKRFRTFHVGANLEKDLSVPYDRFKSHPASLVFKKHS 493
Query: 518 ISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYF 577
+ K +LF+ C+ RE LLMKRN+F YI KT Q+ M+LI TVY RTEM + + G+ Y
Sbjct: 494 VPKSQLFKVCWDRELLLMKRNAFFYITKTVQIIIMALIASTVYLRTEMGTKNESDGAVYI 553
Query: 578 GALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTI 637
GAL FS++ MFNGFAE A+ + RLP+FYKQRD LF+P W F+LP +LL IPISI +S +
Sbjct: 554 GALMFSMIVNMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFSLPTFLLGIPISIFESVV 613
Query: 638 WVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIM 697
WV +TYY IG+ P SRF K L F M+ ++R +AA R+ +++NT G ++L++
Sbjct: 614 WVTITYYMIGFAPELSRFLKHLLVIFLTQQMAGGIFRFIAATCRSMILANTGGALVILLL 673
Query: 698 MSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKV 757
LGGF++ + +I + +W Y++SPM Y +L VNE L RW N+ S N ++G
Sbjct: 674 FLLGGFIVPRGEIPKWWKWAYWVSPMAYTYDALTVNEMLAPRWI--NQPSSDNSTSLGLA 731
Query: 758 LLKIRGFSTESNWYWIGVGALTGYSXXXXXXXXXXXXXXNPIGDSNSTVIEEDGEKQRA- 816
+L+I T+ NWYWIGVG + G++ NP+ + V +E+ E+ RA
Sbjct: 732 VLEIFDIFTDPNWYWIGVGGILGFTVLFNILVTLALTFLNPLEKQQAVVSKENTEENRAE 791
Query: 817 SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVG 876
+G +++ + + + N + P + +S D +K E G
Sbjct: 792 NGSKSKSIDVKRGMVLPFTPLTMSFDNVNYYVDM-PKEMKEQGVSK--DKLQLLK-EVTG 847
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPK 933
R +L ++ GV G T LM V AG+ T + + G+ E +ISGY +
Sbjct: 848 VFRPGVLTALMGVSGAGK-TTLMDVL-AGRKTGGYIEGDIRISGFPKRQETFARISGYCE 905
Query: 934 NQETFA-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ + +V+ +++ I+S ++ + + + +R VD V E++EL LK
Sbjct: 906 QNDIHSPQVT--VKESLIYSAFLRLPKEVTKYEKMRF---VDE------VMELVELESLK 954
Query: 993 SLNDSMVGLPGVS 1005
+ G+ G+S
Sbjct: 955 DAVVGLPGITGLS 967
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q7PC87 | AB34G_ARATH | No assigned EC number | 0.6974 | 0.9740 | 0.9311 | yes | no |
| Q2PCF1 | PDR2_NICPL | No assigned EC number | 0.6886 | 0.9661 | 0.9185 | N/A | no |
| O24367 | TUR2_SPIPO | No assigned EC number | 0.6219 | 0.9640 | 0.9292 | N/A | no |
| Q76CU2 | PDR1_TOBAC | No assigned EC number | 0.6312 | 0.9582 | 0.9281 | N/A | no |
| Q949G3 | PDR1_NICPL | No assigned EC number | 0.6089 | 0.9575 | 0.9261 | N/A | no |
| A2WSH0 | PDR3_ORYSI | No assigned EC number | 0.6206 | 0.9568 | 0.9121 | N/A | no |
| Q8GU89 | PDR4_ORYSJ | No assigned EC number | 0.6033 | 0.9582 | 0.9179 | yes | no |
| Q8GU88 | PDR7_ORYSJ | No assigned EC number | 0.6102 | 0.9683 | 0.9314 | yes | no |
| Q9NGP5 | ABCG2_DICDI | No assigned EC number | 0.3060 | 0.8034 | 0.8403 | yes | no |
| Q5W274 | PDR3_TOBAC | No assigned EC number | 0.5243 | 0.9740 | 0.9350 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1389 | |||
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.0 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.0 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-99 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-97 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 8e-79 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 9e-70 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-55 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-53 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 9e-46 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 5e-43 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-41 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 9e-41 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 2e-40 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-39 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-37 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-36 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 6e-35 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 5e-32 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 7e-32 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-29 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-29 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-28 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-26 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-25 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-25 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-23 | |
| pfam08370 | 65 | pfam08370, PDR_assoc, Plant PDR ABC transporter as | 6e-23 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-21 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 3e-21 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-21 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-20 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-20 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 3e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-20 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-19 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-19 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-19 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 3e-19 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 6e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 8e-19 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-18 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-18 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 5e-18 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 7e-18 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-18 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 8e-18 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-17 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-17 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-17 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-17 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 6e-17 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 9e-17 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-16 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-16 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-16 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-15 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-15 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 4e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 5e-15 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-15 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 6e-15 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 7e-15 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 8e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-15 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 8e-15 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 8e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-15 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-15 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-14 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-14 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-14 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-14 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-14 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-14 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 3e-14 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 3e-14 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-14 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-14 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 5e-14 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 5e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-14 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-13 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-13 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-13 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-13 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-13 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-13 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 6e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 7e-13 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 8e-13 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-12 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-12 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-12 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-12 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-12 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-12 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-12 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-12 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 3e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 3e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-12 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-12 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-12 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-12 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 5e-12 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 5e-12 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 5e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 7e-12 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-12 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-11 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-11 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 1e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-11 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 3e-11 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 3e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-11 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-11 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 4e-11 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-11 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-11 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-11 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-11 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-11 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 8e-11 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-11 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 9e-11 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 1e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-10 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 1e-10 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-10 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-10 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-10 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-10 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-10 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 4e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-10 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 5e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 5e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-10 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 5e-10 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-10 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 6e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-10 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-10 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-10 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 8e-10 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 8e-10 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-09 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 1e-09 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 1e-09 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-09 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-09 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-09 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-09 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-09 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-09 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-09 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-09 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 4e-09 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-09 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-09 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 5e-09 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 6e-09 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 7e-09 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 8e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 8e-09 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 9e-09 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-08 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-08 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-08 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-08 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-08 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-08 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-08 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-08 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-08 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-08 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-08 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-08 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 3e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-08 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-08 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-08 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-08 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 5e-08 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-08 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-08 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 6e-08 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 6e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 7e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-08 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-08 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 7e-08 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 7e-08 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 9e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-07 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-07 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-07 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-07 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-07 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-07 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-07 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-07 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-07 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-07 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-07 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 3e-07 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-07 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-07 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 4e-07 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 4e-07 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-07 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-07 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 5e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 5e-07 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-07 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 5e-07 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 5e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 5e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-07 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-07 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 6e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 6e-07 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 6e-07 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 6e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-07 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 6e-07 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-07 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 7e-07 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 8e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-07 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 9e-07 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-06 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 1e-06 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-06 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-06 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 2e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-06 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 3e-06 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-06 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 4e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-06 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-06 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-06 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 5e-06 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 5e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 6e-06 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-06 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 7e-06 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 8e-06 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 9e-06 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 9e-06 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 9e-06 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-05 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 1e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-05 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-05 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 1e-05 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-05 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-05 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-05 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-05 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-05 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-05 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 3e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-05 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-05 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 3e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 3e-05 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 3e-05 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 3e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-05 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 5e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-05 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 5e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 5e-05 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 5e-05 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-05 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 7e-05 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 7e-05 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 7e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-05 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-05 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-04 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-04 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-04 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-04 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 3e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-04 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-04 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-04 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-04 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 3e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-04 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 4e-04 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 4e-04 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-04 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-04 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 4e-04 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-04 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-04 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-04 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 6e-04 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-04 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 6e-04 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 6e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 7e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-04 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 7e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-04 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-04 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 8e-04 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 8e-04 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-04 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 9e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 9e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 0.001 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.001 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 0.001 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 0.001 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 0.001 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 0.001 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 0.001 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 0.001 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 0.002 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.002 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.002 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 0.002 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.002 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.002 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 0.002 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 0.003 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 0.003 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 0.003 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 0.003 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.003 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.003 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 0.004 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.004 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 0.004 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.004 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 0.004 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.004 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 0.004 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 0.004 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.004 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 1981 bits (5134), Expect = 0.0
Identities = 844/1380 (61%), Positives = 1055/1380 (76%), Gaps = 36/1380 (2%)
Query: 20 SISSGSRRSWASASIREVWNAPDNVFS---RSERQ-----DDEEELRWAAIERLPTYDRL 71
S RRS + + R N D VFS +S R+ +DEE L+WAAIE+LPTY RL
Sbjct: 3 SRGGSMRRSISRSVSRSSRNMED-VFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRL 61
Query: 72 KKGMLNQVLED---GKVVKH-EVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTD 127
+ ++ +E+ G + H EVDV+ L D+++ ++ + K+ EEDNEKFLK+ R+R D
Sbjct: 62 RTSIMKSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRID 121
Query: 128 RVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRIL 187
RVGI++P +EVR++HL+VE D ++G+RALPTL N A N+ ESALG+L + +KK + IL
Sbjct: 122 RVGIKLPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKKTKLTIL 181
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC 247
KD SGI+KPSRMTLLLGPP +GKTTL+LALAGKL L+ SG+ITY G+ LNEFVP++T
Sbjct: 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTS 241
Query: 248 AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAV 307
AYISQ+D+H G MTV+ETLDFS RC GVGTRY+LL+EL+RREK AGI P+ E+D FMKA
Sbjct: 242 AYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKAT 301
Query: 308 AVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMD 367
A+ G ++SL+TDY LKILGLDIC DT+VGDEM RGISGGQKKRVTTGEM+VG L+MD
Sbjct: 302 AMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMD 361
Query: 368 EISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427
EISTGLDSSTT+QI K L+Q+VH+ + T++++LLQPAPET+DLFDDIILLSEGQIVYQGP
Sbjct: 362 EISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGP 421
Query: 428 RDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487
RD++LEFFE GFKCPERKG ADFLQEVTSKKDQEQYW +N+PYRYI VS+F E FKSF
Sbjct: 422 RDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSF 481
Query: 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTF 547
H+G Q+ ++L VP+DKSQ+H A+LV KY + K EL +AC+ +EWLLMKRN+FVY+FKT
Sbjct: 482 HVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTV 541
Query: 548 QLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYK 607
Q+ ++ I TV+ RTEM + G+ Y GAL FS++ MFNGFAE A+ + RLP+FYK
Sbjct: 542 QIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYK 601
Query: 608 QRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHN 667
QRD LF+P W F LP +LL IPISI++S +WV +TYY+IG+ P ASRFFKQ L F I
Sbjct: 602 QRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQ 661
Query: 668 MSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727
M+ ++RL+A+V RT +I+NT G +LL++ LGGF++ K +I + W Y++SP+ YG
Sbjct: 662 MAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGF 721
Query: 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNF 787
+L VNE RW NK S N +G +L I T+ NWYWIGVGAL G++ LFN
Sbjct: 722 NALAVNEMFAPRW--MNKMASDNSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNV 779
Query: 788 LFIAALAYLNPIGDSNSTVIEEDGEK------------QRASGHEAEGMQMAVRSSSK-- 833
LF AL YLNP+G + + EE E+ A G+ + + S+ +
Sbjct: 780 LFTLALTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGL 839
Query: 834 ------TVGAAQNVTN-RGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSV 886
++ AA V RGM+LPF PL+++FD+++YFVDMPAEMK +GV EDRLQLL V
Sbjct: 840 SKNRDSSLEAANGVAPKRGMVLPFTPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREV 899
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE 946
+G FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI+ISG+PK QETFAR+SGYCE
Sbjct: 900 TGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCE 959
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
QNDIHSP VTV ESL+YSA+LRL +V +++ MFVDEVMELVEL +L D++VGLPGV+G
Sbjct: 960 QNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTG 1019
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP
Sbjct: 1020 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1079
Query: 1067 SIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVS 1126
SIDIFEAFDELLL+KRGG+VIY+GPLG SHK+IEYFEA+PGVPKIKE YNPATWMLEVS
Sbjct: 1080 SIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVS 1139
Query: 1127 NISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPTKYSQPFLTQFRACF 1186
+++ E +LGIDFAE Y SSL+QRNK L+KELSTPPPG+SDLYF T+YSQ QF++C
Sbjct: 1140 SLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQFKSCL 1199
Query: 1187 WKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLG 1246
WKQ+W+YWR+P YN +RF TL A+ G I+W G K S DL + GAMY+ +F+G
Sbjct: 1200 WKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVG 1259
Query: 1247 TSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIG 1306
+N +V P++ VERTV+YRERAAGM++A+PYA+AQV EI YV +Q+ Y LI+YAM+
Sbjct: 1260 INNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVA 1319
Query: 1307 FKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVAR 1366
F+W KF F++ + SF+ FT YGMM V+LTP QQVA I + F ++NLFSGF + R
Sbjct: 1320 FEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPR 1379
|
Length = 1470 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 1181 bits (3056), Expect = 0.0
Identities = 399/1323 (30%), Positives = 619/1323 (46%), Gaps = 120/1323 (9%)
Query: 112 EEDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLES 169
E + + ++K R D I K+ V Y +LS G V + PT N L +L
Sbjct: 2 EFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTR 60
Query: 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRAS 228
L ++ ILK + G++KP +T++LG PG+G +TL+ +A G +
Sbjct: 61 GFRKLKK-FRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVE 119
Query: 229 GKITYCGHELNEFVPQRT--CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS 286
G ITY G E Y ++ D+H +TV ETLDF+ RC R + ++
Sbjct: 120 GVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+ + D + GL +T VG++ RG+SGG
Sbjct: 180 YAKH--------------------------IADVYMATYGLSHTRNTKVGNDFVRGVSGG 213
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
++KRV+ E +G A + D + GLDS+T + + LK +ILD T +VA+ Q + +
Sbjct: 214 ERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYW- 465
Y+LFD +I+L EG +Y GP D ++FE MGFKCP+R+ ADFL +TS + Q
Sbjct: 274 AYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPA-ERQIKP 332
Query: 466 -FRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDK----------SQAHPA----- 509
+ K P +F +++ Q+ ++ D+ ++H A
Sbjct: 333 GYEKKVP---RTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKR 389
Query: 510 SLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGD 569
+ Y +S + C AR +L MK N +F F M+LI +V++ + D
Sbjct: 390 TRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSD 449
Query: 570 MNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIP 629
GALFF++L F+ E A PI K R + Y A A+ + IP
Sbjct: 450 ---FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIP 506
Query: 630 ISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTL 689
I++S ++ + Y+ + + A RFF L F L+R + AV +T + T
Sbjct: 507 FKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTP 566
Query: 690 GTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPS- 748
+LL + GF + + + + +W YY++P+ Y SL+VNEF G R++ PS
Sbjct: 567 AAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRRFECSQYVPSG 626
Query: 749 INQPTIG----------------KVL----LKIRGFSTESNWYWIGVGALTGYSFLFNFL 788
+G V LK+ F ++ W G + G++ F F+
Sbjct: 627 GGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFV 685
Query: 789 FIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMIL 848
+I + ++ G +RA + S+S G +L
Sbjct: 686 YILLTEFNKGAKQKGEILVFRRGSLKRAK-------KAGETSASNKNDIE-----AGEVL 733
Query: 849 PFQPLSLTFDNMSYFVDMPAEMKTE-----------GVGEDRLQLLHSVSGVFRPGVLTA 897
L+ D+++ DM E + + +++ +L++V G +PG LTA
Sbjct: 734 GSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTA 793
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
LMG SGAGKTTL++VLA R T G I G ++ +F R GY +Q D+H P TV
Sbjct: 794 LMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTV 853
Query: 958 YESLLYSAWLRLSSDVDTKKRKM-FVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
ESL +SA+LR V +K KM +V+EV++L+E++S D++VG+PG GL+ EQRKRLT
Sbjct: 854 RESLRFSAYLRQPKSV-SKSEKMEYVEEVIKLLEMESYADAVVGVPG-EGLNVEQRKRLT 911
Query: 1017 IAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075
I VELVA P ++F+DEPTSGLD++ A + + +R D G+ ++CTIHQPS +FE FD
Sbjct: 912 IGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFD 971
Query: 1076 ELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLG 1135
LLLL++GG+ +Y G LG SH +I YFE G PK E NPA WMLEV +
Sbjct: 972 RLLLLQKGGQTVYFGDLGENSHTIINYFE-KHGAPKCPEDANPAEWMLEVIGAAPGAHAN 1030
Query: 1136 IDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFPT---KYSQPFLTQFRACFWKQYWS 1192
D+ EV+ +SS +Q K + L + D P KY+ QF+ W+ +
Sbjct: 1031 QDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQ 1090
Query: 1193 YWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAIS 1252
YWR P Y +F +T+ A+F G ++ G Q LQN A++ +
Sbjct: 1091 YWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSL---QGLQNQMFAVFMATVLFNPLIQQY 1147
Query: 1253 VIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWEL- 1311
+ P + RER + F+ + + AQ+ VEI Y V ++ I Y +GF W
Sbjct: 1148 LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNAS 1207
Query: 1312 ------GKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVA 1365
+ LF+ F+ F+ G M+++ P A ++ S ++ F G L
Sbjct: 1208 KTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAP 1267
Query: 1366 RSV 1368
S
Sbjct: 1268 PSR 1270
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = 1e-99
Identities = 113/239 (47%), Positives = 146/239 (61%), Gaps = 47/239 (19%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
LT+ N++Y V + + QLL+++SG +PG LTALMG SGAGKTTL+D
Sbjct: 1 GSVLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLD 51
Query: 912 VLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
VLAGRKT G I G+I I+G P + + F R +GY EQ D+HSP +TV E+L +SA LR
Sbjct: 52 VLAGRKTAGVITGEILINGRPLD-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR--- 107
Query: 972 DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
GLS EQRKRLTI VEL A PSI+F+D
Sbjct: 108 ----------------------------------GLSVEQRKRLTIGVELAAKPSILFLD 133
Query: 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
EPTSGLD++AA ++R ++ D+G+ ++CTIHQPS IFE FD LLLLKRGG+ +Y G
Sbjct: 134 EPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 323 bits (831), Expect = 9e-97
Identities = 161/499 (32%), Positives = 255/499 (51%), Gaps = 26/499 (5%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKNQET 937
R LL +VSGV +PG L A+MG SGAGKTTLM+ LA R G G + ++G P + +
Sbjct: 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKE 96
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
+S Y +Q+D+ P +TV E L++ A LR+ V K+++ VDEV++ + L+ ++
Sbjct: 97 MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANT 156
Query: 998 MVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+G+PG V GLS +RKRL A EL+ +P ++F DEPTSGLD+ A V++ ++ G
Sbjct: 157 RIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKG 216
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAY 1116
+T++CTIHQPS ++FE FD+++L+ GRV Y G + +F + G P E Y
Sbjct: 217 KTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSPDQ----AVPFFSDL-GHP-CPENY 269
Query: 1117 NPATWMLEVSNISVENQLG--------IDFAEVYADSSLHQRNKELIKELSTPPPG---S 1165
NPA + ++V + ++ D +A S + + S G
Sbjct: 270 NPADFYVQVLAVIPGSENESRERIEKICDS---FAVSDIGRDMLVNTNLWSGKAGGLVKD 326
Query: 1166 SDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKT 1225
S+ Y+ + TQF A + + S R+P +R T++ AI GLIY GQ
Sbjct: 327 SENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYL--GQGL 384
Query: 1226 SKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAV 1285
+ Q+ +QN+ GA++ + N VI V E V+ RE +G++ Y LA+
Sbjct: 385 T-QKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIA 443
Query: 1286 EIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVA 1345
E+ + ++ I Y MIG + F F + + + T +G +I +A
Sbjct: 444 ELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMA 503
Query: 1346 TIVLSFFLSVWNLFSGFLV 1364
V F+ + LF GF +
Sbjct: 504 LTVGPPFVIPFLLFGGFFI 522
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 257 bits (659), Expect = 8e-79
Identities = 101/239 (42%), Positives = 146/239 (61%), Gaps = 45/239 (18%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
++L+F N++ V + QLL +VSG +PG LTA+MG SGAGK+TL++
Sbjct: 1 GVTLSFRNLTVTVK-------SSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLN 53
Query: 912 VLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
LAGR+TG + G++ I+G P ++ +F ++ GY Q+DI P +TV E+L+++A LR
Sbjct: 54 ALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--- 110
Query: 972 DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
GLS +RKR++IA+ELV+NPS++F+D
Sbjct: 111 ----------------------------------GLSGGERKRVSIALELVSNPSLLFLD 136
Query: 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
EPTSGLD+ +A VM +R DTGRT++C+IHQPS +IFE FD+LLLL + GRVIY G
Sbjct: 137 EPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 246 bits (631), Expect = 9e-70
Identities = 161/619 (26%), Positives = 281/619 (45%), Gaps = 58/619 (9%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+LK+VSG+ KP + ++G GAGKTTLM ALA + K ++ SG + G ++ +
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
AY+ Q DL +TVRE L F + ++++EK+ +
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQ-------AHLRMPRRVTKKEKRERV---------- 141
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-RGISGGQKKRVTTGEMLVGTANV 363
D VL+ LGL CA+T +G R +G+SGG++KR+ L+ +
Sbjct: 142 --------------DEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L+ DE ++GLDS + + + LK + T+I + QP+ E ++LFD IIL++EG++
Sbjct: 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVA 246
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEG 483
Y G D + FF +G CPE ADF +V + +N+ I +
Sbjct: 247 YLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPG-----SENESRERI--EKICDS 299
Query: 484 FKSFHMGQQIASDLRVPYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSF 540
F +G+ + + + K+ ++ Y S W F A R WL + R+
Sbjct: 300 FAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPL 359
Query: 541 VYIFKTFQLTFMSLICMTVYFRTEMS-VGDMNGGSRYFGALFFSLLNIMF-NGFAENAMT 598
+ + Q +++ +Y ++ G N GALF L N+ F N F +
Sbjct: 360 LLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNIN----GALFLFLTNMTFQNVFP--VIN 413
Query: 599 V--LRLPIFYKQ-RDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655
V LP+F ++ R L+ S A+ L + +P+ I+ ++ ++TY+ IG A+ F
Sbjct: 414 VFTAELPVFLRETRSGLYRVS-AYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472
Query: 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLR 715
+ N++ L++ + ++ T+G ++ + GGF + D I + +
Sbjct: 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFK 532
Query: 716 WGYYISPMMYGQTSLLVNEFLG-GRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIG 774
W Y+S YG LL+N++ + + + + P+ G+V+L+ F ++
Sbjct: 533 WLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETLSFRNAD--LYLD 590
Query: 775 VGALTGYSFLFNFLFIAAL 793
+ L F F L AL
Sbjct: 591 LIGLVILIFFFRLLAYFAL 609
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 2e-55
Identities = 82/212 (38%), Positives = 124/212 (58%), Gaps = 6/212 (2%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETF 938
++L+ VS G + A++G SG+GKTTL+D ++GR GG G I +G P+ + F
Sbjct: 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQF 79
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
+ Y Q+DI P +TV E+L Y+A LRL RK V E V L+ L +
Sbjct: 80 QKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRV----EDVLLRDLALTR 135
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+G V G+S +R+R++IAV+L+ +P ++ +DEPTSGLD+ A ++ T+ R
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRI 195
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V+ TIHQP D+F FD +LLL G ++Y+G
Sbjct: 196 VILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 2e-53
Identities = 140/503 (27%), Positives = 264/503 (52%), Gaps = 52/503 (10%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L+ V+G+ PG + A++G SG+GK+TL++ LAGR G G I + ++ R
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR- 141
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
+G+ Q+DI P++TV E+L++ + LRL + +++ + + V+ + L ++++G
Sbjct: 142 TGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN 201
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
+ G+S +RKR++IA E++ NPS++ +DEPTSGLDA AA ++ T+ + G+T+V
Sbjct: 202 SFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVT 261
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATW 1121
++HQPS +++ FD +L+L GR ++ G + + YFE+V P NPA +
Sbjct: 262 SMHQPSSRVYQMFDSVLVLSE-GRCLFFG----KGSDAMAYFESVGFSPSF--PMNPADF 314
Query: 1122 MLEVSN-------ISVENQLGIDFAEVYADSSL--------------HQRNKELIKELST 1160
+L+++N +S + + + V + ++L Q N + ST
Sbjct: 315 LLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSAST 374
Query: 1161 PPPGSSD-LYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYW 1219
SSD + T ++Q + R+ +++ S +N +R + A+ GL++W
Sbjct: 375 KEHRSSDRISISTWFNQFSILLQRSLKERKHES------FNTLRVFQVIAAALLAGLMWW 428
Query: 1220 DKGQKTSKQQDLQNLFGAMYSICIFLG---TSNAISVIPVICVERTVYYRERAAGMFAAM 1276
S +D+Q+ G ++ I IF G + N++ V P ER ++ +ERA+GM+
Sbjct: 429 H-----SDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFP---QERAIFVKERASGMYTLS 480
Query: 1277 PYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMI- 1335
Y +A++ ++ + +++ + Y M G K ELG F L + ++ G+ +
Sbjct: 481 SYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALG 540
Query: 1336 VALTPGQQVATIV----LSFFLS 1354
A+ ++ +TIV L+F L+
Sbjct: 541 AAIMDAKKASTIVTVTMLAFVLT 563
|
Length = 659 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 9e-46
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 16/275 (5%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KNQETF 938
L VS PG + L+G +GAGKTTL+ +LAG G+I + GY K
Sbjct: 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKV 76
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R GY Q P +TV E+L + A L S + ++R ++E++EL L+ +
Sbjct: 77 RRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEER---IEELLELFGLEDKANKK 133
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
V LS ++RL+IA+ L+ +P ++ +DEPTSGLD + + +R G
Sbjct: 134 V-----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGV 188
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP---LGHESHKLIEYFEAVPGVPKIKEA 1115
+ + E D +++L G++I G L + + +
Sbjct: 189 TILLSTHILEEAEELCDRVIILND-GKIIAEGTPEELKEKFGGKGVIELEPERLELAELL 247
Query: 1116 YNPATWMLEVSNISVENQLGIDFAEVYADSSLHQR 1150
E + L + ++ +
Sbjct: 248 EGLKLVKGEEELAEILEALLEEGVKIESIEVKEPS 282
|
Length = 293 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 5e-43
Identities = 57/216 (26%), Positives = 105/216 (48%), Gaps = 8/216 (3%)
Query: 522 ELFRACFAREWLLMKRNSFV-YIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580
+A RE+L R+ + +++ Q M+L+ TV+ + S+G +N G L
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLN----RPGLL 56
Query: 581 FFSLLNIMFNGFAENAMTVLR-LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWV 639
FFS+L F+ + +R + ++ Y A+ L L+ +PIS+L + I++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 640 ALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMS 699
+ Y+ +G SRFF L + L +AA+ + ++ +G +LL ++
Sbjct: 117 LIVYFMVGLPV--SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 700 LGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735
L GF + D + +L+W YY++P+ Y +L NEF
Sbjct: 175 LSGFFIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 73/250 (29%), Positives = 118/250 (47%), Gaps = 36/250 (14%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
+ + RIL DVS V+ ++ +LG G+GKTTL+ A++G++ SG+I + G
Sbjct: 13 AKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQ 72
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
Q+ AY+ Q D+ +TVRETL ++ A L K +
Sbjct: 73 PRKPDQFQKCVAYVRQDDILLPGLTVRETLTYT-------------AILRLPRKSSDAIR 119
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
++ + L A T +G + +GISGG+++RV+
Sbjct: 120 KKRVE----------------------DVLLRDLALTRIGGNLVKGISGGERRRVSIAVQ 157
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+ VL +DE ++GLDS T + L Q+ + +I+ + QP + + LFD I+L
Sbjct: 158 LLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILL 216
Query: 417 LSEGQIVYQG 426
LS G+IVY G
Sbjct: 217 LSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 164 bits (417), Expect = 9e-41
Identities = 151/590 (25%), Positives = 247/590 (41%), Gaps = 99/590 (16%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
V KK IL +V G VKP +T L+G GAGKTTL+ LA ++ + G G
Sbjct: 769 VKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR 828
Query: 237 ELNE-FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
L+ F QR+ Y+ Q DLH TVRE+L FS +S+ EK
Sbjct: 829 PLDSSF--QRSIGYVQQQDLHLPTSTVRESLRFSAY-------LRQPKSVSKSEK----- 874
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
M+ V + V+K+L ++ AD +VG G++ Q+KR+T G
Sbjct: 875 --------MEYV-----------EEVIKLLEMESYADAVVG-VPGEGLNVEQRKRLTIGV 914
Query: 356 MLVGT-ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
LV +L++DE ++GLDS T + ICK ++++ ++ + QP+ ++ FD +
Sbjct: 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADH-GQAILCTIHQPSAILFEEFDRL 973
Query: 415 ILLSEG-QIVYQGP----RDNVLEFFE-HMGFKCPERKGVADFLQEV-----TSKKDQEQ 463
+LL +G Q VY G ++ +FE H KCPE A+++ EV + +Q
Sbjct: 974 LLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQ-- 1031
Query: 464 YWFRKNQPYRYIPVSDFVEGFKSFHMGQQIAS---DLRVPYDKSQAHPASLVKEKYGISK 520
D+ E +++ Q + + L K++ KY S
Sbjct: 1032 ---------------DYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076
Query: 521 WELFRACFAREWLLMKRNSFVYIFKTFQLT-FMSLICMTVYFRTEMSVGDMNGGSRYFGA 579
W F+ R + R + Y++ F LT F +L +F+ S + G A
Sbjct: 1077 WYQFKLVLWRTFQQYWR-TPDYLYSKFFLTIFAALFIGFTFFKVGTS---LQGLQNQMFA 1132
Query: 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYP-------SW-AFALPIWLLRIPIS 631
+F + ++FN + LP F QRD SW AF + IP +
Sbjct: 1133 VFMAT--VLFNPLIQQY-----LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYN 1185
Query: 632 ILDSTIWVALTYYTIGYDPAASR---------FFKQFLAFFSIHNMSLPLYRLVAAVGRT 682
++ TI+ + YY +G+ AS+ F F ++ +L +V +
Sbjct: 1186 LVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQ--MVISFNPN 1243
Query: 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732
+ L + + + +S G + + F + Y SP Y +LL
Sbjct: 1244 ADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLS 1293
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 2e-40
Identities = 48/189 (25%), Positives = 89/189 (47%), Gaps = 7/189 (3%)
Query: 1180 TQFRACFWKQYWSYWRNPQYNAI-RFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAM 1238
TQ +A +++ WR+P + R L++A+ FG ++ N G +
Sbjct: 1 TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFG----NLDTSLGGLNRPGLL 56
Query: 1239 YSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYV 1298
+ +F S+ + PV ER V RE A+ +++ Y LA++ VE+ +Q+++++
Sbjct: 57 FFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFL 116
Query: 1299 LILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNL 1358
LI+Y M+G +F LF + + + + G+ I AL P + A+ + L L
Sbjct: 117 LIVYFMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLL 174
Query: 1359 FSGFLVARS 1367
SGF +
Sbjct: 175 LSGFFIPVD 183
|
Length = 210 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 3e-39
Identities = 82/302 (27%), Positives = 143/302 (47%), Gaps = 51/302 (16%)
Query: 170 ALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASG 229
+ + +L L VS V+P + LLGP GAGKTTL+ LAG L SG
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SG 60
Query: 230 KITYCGHELNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+I G+++ + + R Y+ Q + E+TVRE L+F R G LS+
Sbjct: 61 EILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYG----------LSK 110
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
E + I + +L++ GL+ A+ V R +SGG
Sbjct: 111 EEAEERI------------------------EELLELFGLEDKANKKV-----RTLSGGM 141
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAP 405
K+R++ L+ +L +DE ++GLD + +I + L+++ VT++++ +L+
Sbjct: 142 KQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE--- 198
Query: 406 ETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKC--PERKGVADFLQEVTSKKDQEQ 463
E +L D +I+L++G+I+ +G + + E F G PER +A+ L+ + K +E+
Sbjct: 199 EAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERLELAELLEGLKLVKGEEE 258
Query: 464 YW 465
Sbjct: 259 LA 260
|
Length = 293 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 138 bits (349), Expect = 5e-37
Identities = 43/91 (47%), Positives = 60/91 (65%)
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT 395
G+E RGISGG++KRV+ E LV A+VL D + GLDSST +I K ++ M +L T
Sbjct: 112 GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTT 171
Query: 396 MIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
V+L Q + E YDLFD +++L EG+ +Y G
Sbjct: 172 TFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 1e-36
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 38/226 (16%)
Query: 870 MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIK 927
T G G ++ +L SGV +PG + ++G G+G +TL+ LA R T G +EGDI
Sbjct: 10 SFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANR-TEGNVSVEGDIH 68
Query: 928 ISGYP--KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+G P + E + Y + D+H P +TV E+L ++ +
Sbjct: 69 YNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK----------------- 111
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+ V G+S +RKR++IA LV+ S++ D T GLD+ A +
Sbjct: 112 ---------GNEFV-----RGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI 157
Query: 1046 MRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
++ +R D T +++Q S +I++ FD++L+L GR IY G
Sbjct: 158 LKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVL-YEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (368), Expect = 6e-35
Identities = 147/629 (23%), Positives = 282/629 (44%), Gaps = 70/629 (11%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG-KLGKDLRASGKITYCGHELNEFV 242
+++L++V+G +P +T L+G GAGKTTLM LAG K G + G I G +
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIRISGFPKKQET 950
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
R Y Q+D+H ++TVRE+L +S A
Sbjct: 951 FARISGYCEQNDIHSPQVTVRESLIYS--------------------------------A 978
Query: 303 FMK-AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
F++ V+ +E + D V++++ LD D +VG G+S Q+KR+T LV
Sbjct: 979 FLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANP 1038
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG- 420
++++MDE ++GLD+ + + ++ V T++ + QP+ + ++ FD+++L+ G
Sbjct: 1039 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097
Query: 421 QIVYQGP----RDNVLEFFE--HMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRY 474
Q++Y GP ++E+FE K E+ A ++ EV+S + +
Sbjct: 1098 QVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGI-------- 1149
Query: 475 IPVSDFVEGFKSFHMGQQ---IASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFARE 531
DF E +KS + Q+ + +L P +Y S W F++C ++
Sbjct: 1150 ----DFAEHYKSSSLYQRNKALVKELSTP---PPGASDLYFATQYSQSTWGQFKSCLWKQ 1202
Query: 532 WLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNG 591
W R+ + + F +L+ T++++ + N + GA++ ++L + N
Sbjct: 1203 WWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINN 1262
Query: 592 FAE-NAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650
+ M + +FY++R Y + +A+ + IP ++ +T + + Y + ++
Sbjct: 1263 CSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEW 1322
Query: 651 AASRFFK-QFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDD 709
A++FF F++FFS + V+ +V + F L + GF + +
Sbjct: 1323 TAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNL-FSGFFIPRPK 1381
Query: 710 IEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI-NQPTIGKVLLKIRGFSTES 768
I + W Y+I P+ + L+V+++ G + K P PTI + G+ +
Sbjct: 1382 IPKWWVWYYWICPVAWTVYGLIVSQY--GDVEDTIKVPGGAPDPTIKWYIQDHYGY--DP 1437
Query: 769 NWYWIGVGALTGYSFLFNFLFIAALAYLN 797
++ L G++ F F+F + LN
Sbjct: 1438 DFMGPVAAVLVGFTVFFAFIFAFCIRTLN 1466
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 123 bits (312), Expect = 5e-32
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 2/91 (2%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VP 243
ILKD SG+VKP M L+LG PG+G +TL+ ALA + ++ G I Y G EF
Sbjct: 22 ILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY 81
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLG 274
Y+S+ D+H +TVRETLDF+ RC G
Sbjct: 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKG 112
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-32
Identities = 142/577 (24%), Positives = 252/577 (43%), Gaps = 85/577 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-GKDLRASGKITYCGHELNEFVPQ 244
IL V+G+ P + +LGP G+GK+TL+ ALAG++ G + +G I + + + +
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNF--TGTILANNRKPTKQILK 140
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
RT +++Q D+ + +TVRETL F + L L+++EK
Sbjct: 141 RT-GFVTQDDILYPHLTVRETLVFC-------SLLRLPKSLTKQEK-------------- 178
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
LV + V+ LGL C +T++G+ RGISGG++KRV+ ++ ++L
Sbjct: 179 ----------ILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE ++GLD++ +++ L + T++ ++ QP+ Y +FD +++LSEG+ ++
Sbjct: 229 ILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLF 287
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQP---------YRY- 474
G + + +FE +GF ADFL ++ + Q + +P Y
Sbjct: 288 FGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347
Query: 475 --------IPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKW-ELFR 525
I +S F + F V ++ H +S ++ IS W F
Sbjct: 348 LAPKVKAAIEMSHFPQANARF-----------VGSASTKEHRSS---DRISISTWFNQFS 393
Query: 526 ACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLL 585
R K SF + FQ+ +L+ +++ + D G LFF +
Sbjct: 394 ILLQRSLKERKHESF-NTLRVFQVIAAALLAGLMWWHS-----DFRDVQDRLGLLFFISI 447
Query: 586 NIMFNGFAENAMTVLRLP----IFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVAL 641
F G + +V P IF K+R Y ++ + + +P+ ++ TI++ +
Sbjct: 448 ---FWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTV 504
Query: 642 TYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLG 701
TY+ G P F L +S L + A ++T+ T +L + G
Sbjct: 505 TYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTG 564
Query: 702 GFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738
GF + K + + W YIS Y LL+N G
Sbjct: 565 GFYVHK--LPSCMAWIKYISTTFY-SYRLLINVQYGE 598
|
Length = 659 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 1e-29
Identities = 71/216 (32%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKN 934
+ + L VS PG+ L+G +GAGKTTLM +LA + G I + P
Sbjct: 11 GKKRALDGVSLTLGPGM-YGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-- 67
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ R GY Q P TV E L Y AWL+ + +K+ K VDEV+ELV L
Sbjct: 68 -QKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDR 123
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+G LS R+R+ IA LV +PSI+ +DEPT+GLD I R + + +
Sbjct: 124 AKKKIG-----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP-EERIRFRNLLSELG 177
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
R V+ + H D+ +++ +L G++++ G
Sbjct: 178 EDRIVILSTHIVE-DVESLCNQVAVLN-KGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 3e-29
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 21/210 (10%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFA--RVSGYC 945
G + L+G +GAGKTT + +L G R T G I+GY + A + GYC
Sbjct: 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG----TAYINGYSIRTDRKAARQSLGYC 80
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
Q D +TV E L + A L+ + K V+ ++ ++ L +
Sbjct: 81 PQFDALFDELTVREHLRFYARLKGLPK---SEIKEEVELLLRVLGLTDKANKRAR----- 132
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS +++L++A+ L+ PS++ +DEPTSGLD + + + V GR+++ T H
Sbjct: 133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLI-LEVRKGRSIILTTH- 190
Query: 1066 PSIDIFEAF-DELLLLKRGGRVIYAGPLGH 1094
S+D EA D + ++ G++ G
Sbjct: 191 -SMDEAEALCDRIAIMSD-GKLRCIGSPQE 218
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 6e-28
Identities = 54/211 (25%), Positives = 96/211 (45%), Gaps = 23/211 (10%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET--- 937
L +S + G ++G +G+GK+TL+ +L G G G++ + G + +
Sbjct: 15 PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL--GPTSGEVLVDGKDLTKLSLKE 72
Query: 938 FARVSGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
R G QN P TV E + + + + ++R V+E +ELV L+
Sbjct: 73 LRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENLGLPEEEIEER---VEEALELVGLE 125
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L D LS Q++R+ IA L +P I+ +DEPT+GLD ++ ++
Sbjct: 126 GLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL 180
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G+T++ H + E D +++L+ G
Sbjct: 181 KAEGKTIIIVTHDLD-LLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-26
Identities = 65/214 (30%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L VS +PG A++G +GAGK+TL+ + G + T G I++ G P +E R
Sbjct: 15 LEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT----SGSIRVFGKPLEKER-KR 69
Query: 941 VSGYCEQN---DIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLND 996
+ GY Q D P ++V + +L + +K K VDE +E V L L D
Sbjct: 70 I-GYVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD 127
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+G LS Q++R+ +A LV +P ++ +DEP +G+D + + +R G
Sbjct: 128 RQIGE-----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREG 182
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T++ H + + E FD +LLL R V+ +G
Sbjct: 183 MTILVVTHDLGL-VLEYFDRVLLLNR--TVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 2e-25
Identities = 38/98 (38%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K ++LK+VSG KP +T ++GP GAGK+TL+ ALAG+ L SG++ G
Sbjct: 16 SPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRR-TGLGVSGEVLINGRP 74
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
L++ ++ Y+ Q D+ H +TVRETL F+ + G+
Sbjct: 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLRGL 112
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 5e-25
Identities = 65/222 (29%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPKNQETF 938
+L +S G +T ++G +G+GK+TL+ LAG G++ + G + +
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK--PKSGEVLLDGKDIASLSPKEL 74
Query: 939 ARVSGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
A+ Y Q+ +TVYE +L + S D + V+E +EL+ L+
Sbjct: 75 AKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEI----VEEALELLGLEH 130
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-T 1052
L D V LS +R+R+ IA L I+ +DEPTS LD V+ +R+
Sbjct: 131 LADR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN 185
Query: 1053 VDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
+ G TVV +H D+ A D L+LLK G V P
Sbjct: 186 REKGLTVVMVLH----DLNLAARYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 8e-25
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 21/218 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+L +S G +TAL+G +GAGK+TL+ + G G+IKI G P +
Sbjct: 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP--SSGEIKIFGKPVRKRRKRL 75
Query: 941 VSGYCEQNDIHSPY--VTVYE---SLLYSA--WLRLSSDVDTKKRKMFVDEVMELVELKS 993
GY Q +TV + Y W R + D +K VDE +E V ++
Sbjct: 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK----VDEALERVGMED 131
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L D +G LS Q++R+ +A L NP ++ +DEP +G+D + ++
Sbjct: 132 LRDRQIG-----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR 186
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G+TV+ H + + FD ++ L R +I +GP
Sbjct: 187 QEGKTVLMVTHDLGL-VMAYFDRVICLNR--HLIASGP 221
|
Length = 254 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.1 bits (248), Expect = 3e-23
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 20/221 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
KT G G +++Q L VS G A++G SG+GK+TL+++L G R T G +
Sbjct: 8 KTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTD 67
Query: 928 ISGYPKNQETFARVS--GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
IS + + R G+ Q+ + P +T E++ L L+ V K+R+ +
Sbjct: 68 ISKLSEKELAAFRRRHIGFVFQS--FNLLPDLTALENVELP--LLLAG-VPKKERRERAE 122
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
E++E V L + S LS Q++R+ IA L +P II DEPT LD+
Sbjct: 123 ELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGK 177
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
VM +R + G T+V H P ++ E D ++ L+ G
Sbjct: 178 EVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|219810 pfam08370, PDR_assoc, Plant PDR ABC transporter associated | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 6e-23
Identities = 34/63 (53%), Positives = 44/63 (69%)
Query: 744 NKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSN 803
+K S + T+G+ +LK RG TE+ WYWIGVGAL G++ LFN LF AL YLNP+G S
Sbjct: 2 SKPFSGSNETLGEAVLKSRGLFTEAYWYWIGVGALLGFTILFNILFTLALTYLNPLGKSQ 61
Query: 804 STV 806
+ V
Sbjct: 62 AIV 64
|
This domain is found on the C-terminus of ABC-2 type transporter domains (pfam01061). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents (pfam06422). The PDR family is characterized by a configuration in which the ABC domain is nearer the N-terminus of the protein than the transmembrane domain. Length = 65 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 93.2 bits (233), Expect = 1e-21
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 53/205 (25%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETF 938
L +S G + L+G +GAGKTTL+ ++ G + G+IK+ G K E
Sbjct: 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD----SGEIKVLGKDIKKEPEEV 71
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R GY + +TV E+L S
Sbjct: 72 KRRIGYLPEEPSLYENLTVRENLKLS---------------------------------- 97
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
G ++RL +A L+ +P ++ +DEPTSGLD + +R G+T
Sbjct: 98 ------GG----MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKT 147
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRG 1083
++ + H + D + +L G
Sbjct: 148 ILLSSHILE-EAERLCDRVAILNNG 171
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 2e-21
Identities = 60/223 (26%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G+G ++++ L V+ G A++G SG+GK+TL+++L G + T G +
Sbjct: 9 KIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKD 68
Query: 928 ISGYPKNQETFARVS--GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
++ + + R G+ QN + P +TV E++ + S K+ +
Sbjct: 69 LTKLSEKELAKLRRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELL 126
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
EV+ L + S LS Q++R+ IA L+ NP II DEPT LD++ A
Sbjct: 127 EVLGLEDRLLKKK-------PSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
V+ +R + G+T++ H P ++ + D ++ LK G
Sbjct: 180 EVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 54/219 (24%), Positives = 99/219 (45%), Gaps = 14/219 (6%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKN 934
R L VS G L+G +G+GK+TL+ +L G + T G + D + K+
Sbjct: 14 PGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKS 73
Query: 935 QETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ G QN D TV + + + L + + + V E +ELV L+
Sbjct: 74 LLELRQKVGLVFQNPDDQLFGPTVEDEVAFGL-ENLGLPREEIEER--VAEALELVGLEE 130
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L D LS Q++R+ IA L P I+ +DEPT+GLD + ++ ++
Sbjct: 131 LLDRPP-----FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185
Query: 1054 -DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ G+T++ H +++ + + +++ G+++ G
Sbjct: 186 EEGGKTIIIVTH--DLELVLEYADRVVVLDDGKILADGD 222
|
Length = 235 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 4e-21
Identities = 51/210 (24%), Positives = 82/210 (39%), Gaps = 53/210 (25%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
+L+ VS G + AL+G SG+GK+TL+ +AG G I ++
Sbjct: 14 TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPP 73
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R G Q+ P++TV E++
Sbjct: 74 LRRRIGMVFQDFALFPHLTVLENIAL---------------------------------- 99
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-G 1056
GLS Q++R+ +A L +P ++ +DEPTS LD V +++ G
Sbjct: 100 --------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRG 1083
TVV H D+ EA D +++L+ G
Sbjct: 152 ITVVLVTH----DLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 34/86 (39%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
RG+SGG++KRV+ LV ++L++DE ++GLDSS+ Q+ L+++ T+I ++
Sbjct: 110 RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSI 168
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQG 426
QP+ E ++LFD ++LLS+G+++Y G
Sbjct: 169 HQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-20
Identities = 62/212 (29%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
++L +S + G + +G +GAGKTT M ++ G + G I Y KN E
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEIT--FDGKSYQKNIEAL 71
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R+ E + P +T E+L A L RK +DEV+++V LK
Sbjct: 72 RRIGALIEAPGFY-PNLTARENLRLLARLLG-------IRKKRIDEVLDVVGLKDSAKKK 123
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
V G S ++RL IA+ L+ NP ++ +DEPT+GLD + + + D G T
Sbjct: 124 VK-----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGIT 178
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V+ + H S +I + D + ++ G++I G
Sbjct: 179 VLISSHLLS-EIQKVADRIGII-NKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 89.8 bits (224), Expect = 2e-20
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 50/221 (22%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISG 930
VG +L +S G + ++G +GAGK+TL+ LAG + + G I ++
Sbjct: 6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS 65
Query: 931 YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+ AR Y Q +EL+
Sbjct: 66 LSPKE--LARKIAYVPQ-------------------------------------ALELLG 86
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L L D + LS +R+R+ +A L P I+ +DEPTS LD ++ +R
Sbjct: 87 LAHLADR-----PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLR 141
Query: 1051 NTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G+TVV +H ++ D ++LLK GR++ G
Sbjct: 142 RLARERGKTVVMVLHDLNL-AARYADRVILLK-DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 3e-20
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 20/205 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFA 939
+L +S G + AL G +GAGKTTL +LAG +++ G I ++G P +
Sbjct: 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES----SGSILLNGKPIKAKERR 70
Query: 940 RVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
+ GY Q+ D +V E LL L+ + + + V++ ++L +L +
Sbjct: 71 KSIGYVMQDVDYQLFTDSVREELLLG--LKELDAGNEQ-----AETVLKDLDLYALKER- 122
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
P LS Q++RL IA L++ ++ DEPTSGLD + V +R G+
Sbjct: 123 --HP--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 1059 VVCTIHQPSIDIFEAFDELLLLKRG 1083
V+ H + + D +LLL G
Sbjct: 179 VIVITHDYEF-LAKVCDRVLLLANG 202
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 3e-20
Identities = 59/226 (26%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-- 933
D L ++ + G LTAL+G SGAGK+TL+++L G +G+I+++G
Sbjct: 330 YPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNGIDLRD 387
Query: 934 -NQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
+ E + + + QN PY+ T+ E++ L+ + + + ++
Sbjct: 388 LSPEAWRKQISWVSQN----PYLFAGTIRENI------LLARPDASDEE---IIAALDQA 434
Query: 990 ELKSLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
L GL V +GLS Q +RL +A L++ S++ +DEPT+ LDA I
Sbjct: 435 GLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQI 494
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+++ ++ +TV+ H+ D +A D +++L GR++ G
Sbjct: 495 ILQALQELAK-QKTVLVITHRLE-DAADA-DRIVVLDN-GRLVEQG 536
|
Length = 559 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 6e-20
Identities = 59/201 (29%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCE 946
PG AL+G SG GKTTL+ ++AG R G I ++G P + R G
Sbjct: 23 VEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPER----RNIGMVF 78
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q+ P++TV E++ + LR + + R V E++ELV L+ L +
Sbjct: 79 QDYALFPHLTVAENIAFGLKLRGVPKAEIRAR---VRELLELVGLEGLLNRYP-----HE 130
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGRTVVCTIHQ 1065
LS Q++R+ +A L PS++ +DEP S LDA+ + ++ + G T + H
Sbjct: 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTH- 189
Query: 1066 PSIDIFEAF---DELLLLKRG 1083
D EA D + ++ G
Sbjct: 190 ---DQEEALALADRIAVMNEG 207
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 1e-19
Identities = 62/216 (28%), Positives = 106/216 (49%), Gaps = 18/216 (8%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQE 936
+Q + VS +PG +T L+G +GAGKTT + +LAG G+ + G+ +E
Sbjct: 17 TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFAT----VDGFDVVKE 72
Query: 937 TFA--RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R G+ + +T E+L Y A L + R ++E+ + + ++ L
Sbjct: 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR---LEELADRLGMEEL 129
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
D VG G ST R+++ IA LV +P ++ +DEPT+GLD A + +R
Sbjct: 130 LDRRVG-----GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G+ ++ + H ++ D +++L R GRV+Y G
Sbjct: 185 LGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 2e-19
Identities = 43/104 (41%), Positives = 59/104 (56%), Gaps = 4/104 (3%)
Query: 177 VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
VP K ++L ++SG VKP +T L+G GAGKTTL+ LAG+ +G+I G
Sbjct: 13 VPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR-KTAGVITGEILINGR 71
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSG--RCLGVGTR 278
L++ QR+ Y+ Q D+H +TVRE L FS R L V R
Sbjct: 72 PLDKNF-QRSTGYVEQQDVHSPNLTVREALRFSALLRGLSVEQR 114
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 2e-19
Identities = 60/223 (26%), Positives = 95/223 (42%), Gaps = 25/223 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L VS PG AL+G SGAGK+TL+ L G T G + I+
Sbjct: 17 LKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQL 76
Query: 940 RV-SGYCEQNDIHSPYVTVYESLL---------YSAWLRLSSDVDTKKRKMFVDEVMELV 989
R G Q ++V E++L + + L + K++ +E V
Sbjct: 77 RRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE--KQRAL--AALERV 132
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
L LS Q++R+ IA L+ P +I DEP + LD ++ VM +
Sbjct: 133 GLLDKAYQRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLL 187
Query: 1050 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ + G TV+ ++HQ + E D ++ LK GR+++ GP
Sbjct: 188 KRINREEGITVIVSLHQVDL-AREYADRIVGLKD-GRIVFDGP 228
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 88.3 bits (220), Expect = 3e-19
Identities = 60/227 (26%), Positives = 101/227 (44%), Gaps = 36/227 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEG-DIKISGYPKNQ 935
+L V R G + A++G SG+GK+TL+ ++ G R G I+G DI
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDI-SGLSEAEL 72
Query: 936 ETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
R G Q + + TV+E++ + LR + ++ +E+ E+V
Sbjct: 73 YRLRRRMGMLFQSGALFDSL-----TVFENVAF--PLR-------EHTRLSEEEIREIVL 118
Query: 991 LKSLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
K L VGL G + LS +KR+ +A L +P ++ DEPT+GLD A+ ++
Sbjct: 119 EK-LE--AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175
Query: 1046 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+R+ G T + H F D + +L G+++ G
Sbjct: 176 DDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGT 220
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 3e-19
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTI 1063
V LS QR+R+ +A L+ NP ++ +DEPTSGLD + ++ +R + GRTV+
Sbjct: 78 VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVT 137
Query: 1064 HQPSIDIFEAFDELLLLKRG 1083
H P A D +++LK G
Sbjct: 138 HDPE-LAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 6e-19
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 49/250 (19%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK + + D+S V + LLG GAGKTT + L G+L SG G+ +
Sbjct: 11 KKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIR 67
Query: 240 ---EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ Q Y Q D E+TVRE L F R G L + E +
Sbjct: 68 TDRKAARQSLG-YCPQFDALFDELTVREHLRFYARLKG----------LPKSEIKE---- 112
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+ +L++LGL A+ +SGG K++++
Sbjct: 113 --------------------EVELLLRVLGLTDKANKRART-----LSGGMKRKLSLAIA 147
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L+G +VL +DE ++GLD ++ I + ++ ++I+ E L D I +
Sbjct: 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSMD-EAEALCDRIAI 204
Query: 417 LSEGQIVYQG 426
+S+G++ G
Sbjct: 205 MSDGKLRCIG 214
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 6e-19
Identities = 61/246 (24%), Positives = 104/246 (42%), Gaps = 60/246 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
L D+S +K L++GP G+GK+TL+ L G LG SG++ G +L + +
Sbjct: 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKE 72
Query: 245 --RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R + Q+ D TV E + F LG+ P+ EI+
Sbjct: 73 LRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGL--------------------PEEEIE 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ L+++GL+ D +SGGQK+RV +L
Sbjct: 113 E--------------RVEEALELVGLEGLRDRSPFT-----LSGGQKQRVAIAGVLAMDP 153
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDII 415
++L +DE + GLD + ++ + LK++ T+I+ T+DL D +I
Sbjct: 154 DILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIV-------THDLDLLLELADRVI 205
Query: 416 LLSEGQ 421
+L +G+
Sbjct: 206 VLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 8e-19
Identities = 61/256 (23%), Positives = 111/256 (43%), Gaps = 47/256 (18%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ +L+D+S V+ +T L+GP GAGK+TL+ A+ G L +SG+I G + +
Sbjct: 15 GNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL---KPSSGEIKIFGKPVRKR 71
Query: 242 VPQRTCAYISQH-DLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Y+ Q + +TV++ + LG + L++++K+
Sbjct: 72 RKRLRIGYVPQKSSVDRSFPITVKDVVL-----LGRYGKKGWFRRLNKKDKEKV------ 120
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
D L+ +G++ D +G+ +SGGQK+RV L
Sbjct: 121 -------------------DEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQ 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILL 417
++L +DE TG+D + +I LK++ T+++ L FD +I L
Sbjct: 157 NPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-EGKTVLMVTHDLGLVM---AYFDRVICL 212
Query: 418 SEGQIVYQGPRDNVLE 433
++ GP + VL
Sbjct: 213 -NRHLIASGPPEEVLT 227
|
Length = 254 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 1e-18
Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 23/226 (10%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKN 934
++ V PG LT L+G +G+GK+TL+ +LAG R G ++ + + G +
Sbjct: 12 GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRR 71
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLY------SAWLRLSSDVDTKKRKMFVDEVMEL 988
AR EQ+ + +TV + + S W S D VD +
Sbjct: 72 AR--ARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLW-AGDSPHDAA----VVDRALAR 124
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
EL L D +S LS +R+R+ +A L P ++ +DEPT+ LD RA +
Sbjct: 125 TELSHLADR-----DMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLAL 179
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094
VR TG TVV +H +++ ++ + +++ GGRV+ AGP
Sbjct: 180 VRELAATGVTVVAALH--DLNLAASYCDHVVVLDGGRVVAAGPPRE 223
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 21/223 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------KN 934
Q L +++ PG A++G SGAGK+TL+ + G I + G K
Sbjct: 16 QALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKK 73
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELV 989
R G Q+ +TV E++L Y R +++ K +E V
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
L LS Q++R+ IA L P +I DEP + LD + + VM +
Sbjct: 134 GLADKAYQRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
Query: 1050 RN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ + G TV+ +HQ +D+ + + + ++ + G +++ G
Sbjct: 189 KRINKEDGITVIINLHQ--VDLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 22/219 (10%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKN 934
++Q + VS G +T L+G +GAGKTTL+ ++A + G + I G
Sbjct: 13 SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIAT-----LLIPDSGKVTIDGVDTV 67
Query: 935 QETFA---RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
++ ++ + +++ +T E+L Y A L S + K R + E+ + ++L
Sbjct: 68 RDPSFVRRKIGVLFGERGLYA-RLTARENLKYFARLNGLSRKEIKAR---IAELSKRLQL 123
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
D VG ST ++++ IA LV +PSI+ +DEPTSGLD R ++
Sbjct: 124 LEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQ 178
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ GR V+ + H ++ D +++L + G V+ G
Sbjct: 179 LKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEG 215
|
Length = 245 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQE---T 937
L VS RPG AL+G +GAGK+TL +L T Y+ EG I ++G+ +
Sbjct: 17 LDDVSFTVRPGRFVALLGPNGAGKSTLFSLL----TRLYVAQEGQISVAGHDLRRAPRAA 72
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR+ +Q + ++V ++L Y A L S + + R + E++ + L D
Sbjct: 73 LARLGVVFQQPTL-DLDLSVRQNLRYHAALHGLSRAEARAR---IAELLARLGLAERADD 128
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTG 1056
V L+ R+R+ IA L+ P+++ +DEPT GLD + A + VR D G
Sbjct: 129 KVR-----ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQG 183
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093
+V+ H +D EA D L++L R GRV+ G
Sbjct: 184 LSVLWATHL--VDEIEADDRLVVLHR-GRVLADGAAA 217
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 4e-18
Identities = 62/221 (28%), Positives = 96/221 (43%), Gaps = 34/221 (15%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETFARVSGYCE 946
R G + +G +GAGKTT + +L R T G +++GY + R G
Sbjct: 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG----TARVAGYDVVREPRKVRRSIGIVP 72
Query: 947 QNDIHSPYVTVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
Q Y +V E L + L + + + +E++EL EL D VG
Sbjct: 73 Q------YASVDEDL--TGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG- 123
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
S R+RL IA L+ P ++F+DEPT+GLD R + +R + G T++
Sbjct: 124 ----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILL 179
Query: 1062 TIHQPSIDIFEAFDEL---LLLKRGGRVIYAGPLGHESHKL 1099
T H + EA D+L + + GR+I G +L
Sbjct: 180 TTH----YMEEA-DKLCDRIAIIDHGRIIAEGTPEELKRRL 215
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 5e-18
Identities = 49/193 (25%), Positives = 81/193 (41%), Gaps = 14/193 (7%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKN 934
++L ++ G + AL+G +GAGK+TL+ L G R G + D + Y +
Sbjct: 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRK 61
Query: 935 QETFARVS-GYCEQN-DIHSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVEL 991
R G Q+ D V + + + L LS ++ V E + V
Sbjct: 62 GLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERR----VREALTAVGA 117
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L + LS ++KR+ IA + P ++ +DEPT+GLD ++ +R
Sbjct: 118 SGLRERPTHC-----LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRR 172
Query: 1052 TVDTGRTVVCTIH 1064
G TVV + H
Sbjct: 173 LRAEGMTVVISTH 185
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.6 bits (215), Expect = 6e-18
Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 22/208 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
+ +S + G L+G SG GKTTL+ ++AG + + G I I+ P +
Sbjct: 21 VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK---- 76
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R G Q+ P++TV E++ + L++ + + K V+E +ELV L+ D
Sbjct: 77 RPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELVGLEGFADRK- 133
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRT 1058
LS Q++R+ +A LV P ++ +DEP S LDA+ + + ++ + G T
Sbjct: 134 ----PHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGIT 189
Query: 1059 VVCTIHQPSIDIFEAF---DELLLLKRG 1083
V H D EA D + ++ G
Sbjct: 190 FVYVTH----DQEEALAMSDRIAVMNDG 213
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 7e-18
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 19/222 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQET 937
Q L V+ G + A++G SGAGK+TL+ L G T G I + I+ +
Sbjct: 18 QALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR 77
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
R G Q P ++V E++L Y++ R + +K+ D+ L L
Sbjct: 78 KLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-----DKAQALDAL 132
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR- 1050
+ + S LS Q++R+ IA LV P II DEP + LD +A VM ++
Sbjct: 133 ERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD 192
Query: 1051 -NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
N D G TV+ +HQ +D+ + + + ++ + GR+++ GP
Sbjct: 193 INQED-GITVIVNLHQ--VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 8e-18
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 34/213 (15%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--------EGDIKISGYPKNQETFARV 941
+T + G SGAGK+TL+ +AG + GG I + KI+ P+ R
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQ-----RK 76
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
G Q P++ V E+L + L+ + ++ ++ VDE+++L+ L L +
Sbjct: 77 IGLVFQQYALFPHLNVRENLAFG--LKRKRN---REDRISVDELLDLLGLDHLLNR---- 127
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1060
+ LS +++R+ +A L A P ++ +DEP S LD ++ ++ + V+
Sbjct: 128 -YPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVI 186
Query: 1061 CTIHQPSIDIFEAF---DELLLLKRGGRVIYAG 1090
H S EA D ++++ GR+ Y G
Sbjct: 187 FVTHDLS----EAEYLADRIVVM-EDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 8e-18
Identities = 49/190 (25%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIE-GDIKISGYPKNQETFA 939
L ++ G L+G SGAGK+TL+ ++ + T G I +S +
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYL 76
Query: 940 RVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R G Q+ P VYE++ ++ + + +KR V +ELV L + ++
Sbjct: 77 RRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR---VPAALELVGLSHKHRAL 133
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
+ LS +++R+ IA +V +P+I+ DEPT LD +M ++ G T
Sbjct: 134 P-----AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTT 188
Query: 1059 VVCTIHQPSI 1068
VV H +
Sbjct: 189 VVVATHAKEL 198
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 1e-17
Identities = 72/274 (26%), Positives = 114/274 (41%), Gaps = 64/274 (23%)
Query: 171 LGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
L + L S V+ ++DVS + +T LLG GAGKTTL+ +A L D SGK
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGK 58
Query: 231 ITYCGHELNEFVPQRTCAYISQH-DLHHGE------MTVRETLDFSGRCLGVGTRYELLA 283
+T G + R +++ + + GE +T RE L + R L
Sbjct: 59 VTIDGVDT-----VRDPSFVRRKIGVLFGERGLYARLTARENLKYFAR----------LN 103
Query: 284 ELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343
LSR+E +A I K L L D VG
Sbjct: 104 GLSRKEIKA------RIAELSKR------------------LQLLEYLDRRVG-----EF 134
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVA 399
S G K++V LV ++L +DE ++GLD T + F+KQ+ + ++ + I+
Sbjct: 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM- 193
Query: 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
E L D +I+L +G++V +G + +
Sbjct: 194 -----QEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-17
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 39/201 (19%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQ 935
L ++ V RPG + L+G +GAGKTTL ++++G R T G +G+ I+G P ++
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGE-DITGLPPHE 71
Query: 936 -------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDE 984
TF + P +TV E+++ +A R L ++ + +
Sbjct: 72 IARLGIGRTFQIPRLF--------PELTVLENVMVAAQARTGSGLLLARARREEREARER 123
Query: 985 VMELVELKSLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
EL+E VGL + LS Q++RL IA L +P ++ +DEP +GL+
Sbjct: 124 AEELLE-------RVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNP 176
Query: 1040 RAAAIVMRTVRNTVDTGRTVV 1060
+ +R + G TV+
Sbjct: 177 EETEELAELIRELRERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-17
Identities = 52/161 (32%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L V+ G L+G SG GK+TL+ ++AG T G I ++ P +
Sbjct: 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK---- 74
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R QN P++TVYE++ + LR + KR V EV +L+ L+ L +
Sbjct: 75 RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR---VKEVAKLLGLEHLLNR-- 129
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
P LS QR+R+ +A LV P + +DEP S LDA+
Sbjct: 130 -KP--LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
|
Length = 338 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 5e-17
Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 24/178 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGG--YIEGDIKISGY 931
L +S G +TAL+G SG GK+TL+ D++ G G ++G I
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK-DIYDL 72
Query: 932 PKNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
+ R G Q P ++Y+++ Y L ++ V+E +
Sbjct: 73 DVDVLELRRRVGMVFQ----KPNPFPGSIYDNVAYGLRLHGIKL--KEELDERVEEALRK 126
Query: 989 VEL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
L + D + L GLS Q++RL +A L P ++ +DEPTS LD + A +
Sbjct: 127 AALWDEVKDRLHAL----GLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKI 180
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 6e-17
Identities = 68/229 (29%), Positives = 107/229 (46%), Gaps = 35/229 (15%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKI 928
KT G G + L +S G AL+G SG GK+TL+ ++AG R T G++ +
Sbjct: 8 KTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT----SGEVLV 63
Query: 929 SGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
G P R GY Q D P++TV +++ L+ V + + + EL
Sbjct: 64 DGEPVTGPGPDR--GYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEAR---ERAEEL 115
Query: 989 VELKSLNDSMVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+E +VGL G LS R+R+ +A L +P ++ +DEP S LDA
Sbjct: 116 LE-------LVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTRE 168
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAF---DELLLL-KRGGRVI 1087
+ + + +TG+TV+ H DI EA D +++L R GR++
Sbjct: 169 QLQEELLDIWRETGKTVLLVTH----DIDEAVFLADRVVVLSARPGRIV 213
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 6e-17
Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 34/218 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQ---ET 937
L +VS R G A++G G+GK+TL+ +LAG Y G + + G Q
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGL----YKPTSGSVLLDGTDIRQLDPAD 75
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY Q D+ Y T+ +++ A L+ D ++ EL + D
Sbjct: 76 LRRNIGYVPQ-DVTLFYGTLRDNITLGA--PLADDE----------RILRAAELAGVTDF 122
Query: 998 MVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ P GLS QR+ + +A L+ +P I+ +DEPTS +D + +
Sbjct: 123 VNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKER 182
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
+R + +T++ H+PS+ + D ++++ G V
Sbjct: 183 LRQLL-GDKTLIIITHRPSLL--DLVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 9e-17
Identities = 66/257 (25%), Positives = 114/257 (44%), Gaps = 59/257 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
L +VS ++P ++G G+GK+TL+ L G G + G ++ + P
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADL 537
Query: 244 QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R Y+ Q L +G T+R+ + LG P + +
Sbjct: 538 RRNIGYVPQDPRLFYG--TLRDNI-----ALGA--------------------PYADDEE 570
Query: 303 FMKAVAVAGQETSLVTDYV-LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++A +AG VT++V GLD +G E R +SGGQ++ V L+
Sbjct: 571 ILRAAELAG-----VTEFVRRHPDGLD----MQIG-ERGRSLSGGQRQAVALARALLRDP 620
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLFDDIIL 416
+L +DE ++ +D+ + + LK+ + T+++ +LL DL D II+
Sbjct: 621 PILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRTSLL-------DLVDRIIV 671
Query: 417 LSEGQIVYQGPRDNVLE 433
+ G+IV GP+D VLE
Sbjct: 672 MDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 1e-16
Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 11/217 (5%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
L +S + G L AL+G SGAGK+TL+ ++AG G I + ++ N
Sbjct: 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R G+ Q+ P++TV +++ + +R + + V+E++ LV+L+ L
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKER-PSEAEIRARVEELLRLVQLEGLA 131
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD- 1054
D P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R D
Sbjct: 132 DRY---P--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDR 186
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G T V H + E D +++L + GR+ GP
Sbjct: 187 LGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 1e-16
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 30/224 (13%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
SL F +S R L VS PG AL+G SGAGK+TL++
Sbjct: 319 APSLEFSGVSV------------AYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLN 366
Query: 912 VLAGRKTGGYIEGDIKISGYPK---NQETFARVSGYCEQNDIHSPYV---TVYESLLYSA 965
+L G EG I ++G P + +++ + Q+ P++ T+ E++ +
Sbjct: 367 LLLGFVDPT--EGSIAVNGVPLADADADSWRDQIAWVPQH----PFLFAGTIAENIRLA- 419
Query: 966 WLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
R + + + + E V L D+ +G G +GLS Q +RL +A + +
Sbjct: 420 --RPDASDAEIREALERAGLDEFVAALPQGLDTPIG-EGGAGLSGGQAQRLALARAFLRD 476
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
++ +DEPT+ LDA A V+ +R + GRTV+ H+ ++
Sbjct: 477 APLLLLDEPTAHLDAETEAEVLEALRA-LAQGRTVLLVTHRLAL 519
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-16
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 41/225 (18%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQETFAR 940
L ++ +PG A++G +GAGKTTL+++L Y +G I I G +
Sbjct: 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLL----MRFYDPQKGQILIDGIDIRDISRKS 74
Query: 941 VS---GYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ G Q ++ T+ E++ R ++ + EV+E +
Sbjct: 75 LRSMIGVVLQ----DTFLFSGTIMENIRLG---RPNATDE---------EVIEAAKEAGA 118
Query: 995 NDSMVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+D ++ LP LS +R+ L IA ++ +P I+ +DE TS +D ++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ + GRT + H+ S I A D++L+L G++I G
Sbjct: 179 QEALEKLMK-GRTSIIIAHRLST-IKNA-DKILVLDD-GKIIEEG 219
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-16
Identities = 60/208 (28%), Positives = 95/208 (45%), Gaps = 25/208 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETFARVSGYCE 946
R G + L+G +GAGKTT + +L + T G ++G+ + R G
Sbjct: 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG----RATVAGHDVVREPREVRRRIGIVF 79
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
Q+ +T +E+L A L V +R+ +DE+++ V L D +V
Sbjct: 80 QDLSVDDELTGWENLYIHARL---YGVPGAERRERIDELLDFVGLLEAADRLV-----KT 131
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQ 1065
S R+RL IA LV P ++F+DEPT GLD + A V + + G T++ T H
Sbjct: 132 YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTH- 190
Query: 1066 PSIDIFEA---FDELLLLKRGGRVIYAG 1090
+ EA D + ++ GR+I G
Sbjct: 191 ---YMEEAEQLCDRVAIIDH-GRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 3e-16
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 43/220 (19%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQ---ETFARVSGY 944
PG A++G SG+GK+TL+ +L G Y +G I + G N + R GY
Sbjct: 496 IPPGEKVAIVGRSGSGKSTLLKLLLGL----YKPQQGRILLDGVDLNDIDLASLRRQVGY 551
Query: 945 CEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Q+ L+S +R L + T +E++E +L ++ +
Sbjct: 552 VLQDP-----------FLFSGSIRENIALGNPEATD------EEIIEAAQLAGAHEFIEN 594
Query: 1001 LP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LP G + LS QR+RL +A L++ P I+ +DE TS LD AI+++ +
Sbjct: 595 LPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL- 653
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ GRTV+ H+ S + D +++L G+++ G
Sbjct: 654 QILQGRTVIIIAHRLS--TIRSADRIIVLD-QGKIVEQGS 690
|
Length = 709 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 1e-15
Identities = 50/194 (25%), Positives = 85/194 (43%), Gaps = 15/194 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQE 936
+L ++ G + A++G SG+GK+TL++++ + G Y+ G K
Sbjct: 12 VILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKAS 71
Query: 937 TFAR-VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSL 994
F R GY QN TV E+L L+ +KR+ E +E V L L
Sbjct: 72 KFRREKLGYLFQNFALIENETVEENLDLG--LKYKKLSKKEKREKKK-EALEKVGLNLKL 128
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ LS +++R+ +A ++ P +I DEPT LD + V+ + D
Sbjct: 129 KQK------IYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELND 182
Query: 1055 TGRTVVCTIHQPSI 1068
G+T++ H P +
Sbjct: 183 EGKTIIIVTHDPEV 196
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 63/213 (29%), Positives = 99/213 (46%), Gaps = 27/213 (12%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQETFARVSGYCE 946
G + A++G SG+GK+TL+ ++ G R G I DI + E R+ G
Sbjct: 33 RGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM-GVLF 91
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGV-- 1004
Q +TV+E++ + LR + + + ELV +K L +VGL G
Sbjct: 92 QQGALFSSLTVFENVAFP--LREHTKLPES-------LIRELVLMK-LE--LVGLRGAAA 139
Query: 1005 ----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTV 1059
S LS RKR+ +A + +P ++F+DEPTSGLD +A ++ +R D G TV
Sbjct: 140 DLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTV 199
Query: 1060 VCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
+ H + D + +L G+VI G
Sbjct: 200 IMVTHDLDS-LLTIADRVAVLAD-GKVIAEGTP 230
|
Length = 263 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 65/256 (25%), Positives = 111/256 (43%), Gaps = 54/256 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL D+S + +T +LGP G+GK+TL+ LAG L SG++ G ++ P+
Sbjct: 17 ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKE 73
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ AY+ Q +TV E L L R
Sbjct: 74 LAKKLAYVPQSPSAPFGLTVYE-----------------LVLLGRY-------------P 103
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ +E + + L++LGL+ AD V + +SGG+++RV L
Sbjct: 104 HLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-----LSGGERQRVLIARALAQETP 158
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------DDIIL 416
+L +DE ++ LD + ++ + L+ + +T+++ L +DL D +IL
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVL-------HDLNLAARYADHLIL 211
Query: 417 LSEGQIVYQGPRDNVL 432
L +G+IV QG + VL
Sbjct: 212 LKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 2e-15
Identities = 57/215 (26%), Positives = 103/215 (47%), Gaps = 22/215 (10%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKN 934
R+ L +S G + L+G +GAGKTT + ++ G I G++ G P +
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILG------IILPDSGEVLFDGKPLD 65
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R+ GY + P + V + L+Y A L+ + ++R +DE +E +EL
Sbjct: 66 IAARNRI-GYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRR---IDEWLERLELSEY 121
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ V LS ++++ ++ +P ++ +DEP SGLD ++ +R
Sbjct: 122 ANKRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR 176
Query: 1055 TGRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIY 1088
G+TV+ + HQ +++ E D +LLL +G V+Y
Sbjct: 177 AGKTVILSTHQ--MELVEELCDRVLLLNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 74.7 bits (185), Expect = 2e-15
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 60/209 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
+L VS +PG A++G SG+GK+TL+ +L T G I + + + E+
Sbjct: 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL--DLES 73
Query: 938 FARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ Y Q+ P++ T+ E++L
Sbjct: 74 LRKNIAYVPQD----PFLFSGTIRENIL-------------------------------- 97
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
SG QR+R+ IA L+ +P I+ +DE TS LD A+++ +R +
Sbjct: 98 ----------SGG---QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRA-LA 143
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G+TV+ H+ S D +++L G
Sbjct: 144 KGKTVIVIAHRLS--TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 4e-15
Identities = 57/178 (32%), Positives = 93/178 (52%), Gaps = 16/178 (8%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQ 947
+ G L+G +GAGKTT + +L G G I + G P + + RV G Q
Sbjct: 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHPD--AGSISLCGEPVPSRARHARQRV-GVVPQ 87
Query: 948 NDIHSPYVTVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
D P TV E+LL + + LS+ R + V ++E +L++ D+ VG
Sbjct: 88 FDNLDPDFTVRENLLVFGRYFGLSA---AAARAL-VPPLLEFAKLENKADAKVG-----E 138
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS ++RLT+A LV +P ++ +DEPT+GLD +A ++ +R+ + G+T++ T H
Sbjct: 139 LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 5e-15
Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 53/269 (19%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
+L + + LKDVS + P L+GP GAGK+TL+ L G + SG +
Sbjct: 5 NLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLID 61
Query: 235 GHELNEFVPQ------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELS 286
G ++N+ + R I Q + ++V E + SGR T L
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQ--FNLIERLSVLENV-LSGRLGRRSTWRSLFGLFP 118
Query: 287 RREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346
+ EKQ + L+ +GL A D++ SGG
Sbjct: 119 KEEKQRAL-------------------------AALERVGLLDKAYQRA-DQL----SGG 148
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
Q++RV L+ ++ DE LD +++ Q+ LK++ +T+IV+L Q
Sbjct: 149 QQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV--- 205
Query: 407 TYDL----FDDIILLSEGQIVYQGPRDNV 431
DL D I+ L +G+IV+ GP +
Sbjct: 206 --DLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 5e-15
Identities = 59/221 (26%), Positives = 101/221 (45%), Gaps = 21/221 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET 937
+LL VS RPG + A++G +GAGK+TL+ L+G + G++ ++G P N E
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD--SGEVTLNGVPLNSWPPEE 72
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR QN + TV E + + S + ++ + + + +L L
Sbjct: 73 LARHRAVLPQNSSLAFPFTVQEVVQMGR-IPHRSGREPEEDERIAAQALAATDLSGLAGR 131
Query: 998 MVGLPGVSGLSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LS +++R+ +A L V + +F+DEPTS LD +R R
Sbjct: 132 DY-----RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ 186
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIYAGP 1091
G V+ +H +++ + D ++LL + GRVI +G
Sbjct: 187 LAREGGAVLAVLH--DLNLAAQYADRIVLLHQ-GRVIASGS 224
|
Length = 259 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 5e-15
Identities = 53/173 (30%), Positives = 76/173 (43%), Gaps = 17/173 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQET 937
+ VS R G L+G SG+GK+TL +LAG + G I D+ ++G
Sbjct: 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTG--GELRR 364
Query: 938 FARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SL 994
R Q+ S P +TV + L LR+ +R+ V E++ELV L
Sbjct: 365 LRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERRARVAELLELVGLPPEF 422
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
D LS QR+R+ IA L P ++ +DEP S LD A V+
Sbjct: 423 LDRYPHE-----LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLN 470
|
Length = 539 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 6e-15
Identities = 67/248 (27%), Positives = 105/248 (42%), Gaps = 48/248 (19%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
SVR L D+S V+P LLGP G GKTTL+ +AG D SG+I G ++
Sbjct: 11 GSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGV 67
Query: 242 VP-QRTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P +R + Q H +TV E + F + GV AE+ R ++
Sbjct: 68 PPERRNIGMVFQDYALFPH--LTVAENIAFGLKLRGVPK-----AEIRARVREL------ 114
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
L+++GL+ + +SGGQ++RV L
Sbjct: 115 -----------------------LELVGLEGLLNRYP-----HELSGGQQQRVALARALA 146
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++L +DE + LD+ ++ + LK++ L +T I E L D I +++
Sbjct: 147 REPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMN 205
Query: 419 EGQIVYQG 426
EG+IV G
Sbjct: 206 EGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 7e-15
Identities = 55/193 (28%), Positives = 86/193 (44%), Gaps = 21/193 (10%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 931
G + Q+L VS G + AL+G +GAGKTTL+ + G G I I+G
Sbjct: 8 AGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67
Query: 932 PKNQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
P R GY + P +TV E+LL A+ R + + ++ V EL
Sbjct: 68 P----PHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYEL 118
Query: 989 V-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LK + G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 119 FPRLKERRKQLAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 173
Query: 1048 TVRNTVDTGRTVV 1060
+R D G T++
Sbjct: 174 AIRELRDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 8e-15
Identities = 62/275 (22%), Positives = 106/275 (38%), Gaps = 60/275 (21%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI--- 231
+L LKDVS ++ LL+GP G+GK+TL+ L G L K SG++
Sbjct: 8 NLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNG-LLKP--TSGEVLVD 64
Query: 232 -TYCGHELNEFVPQRTCAYISQHDLHHG-EMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
E + ++ + Q+ TV + + F LG+
Sbjct: 65 GLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL-------------- 110
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
P EI+ L+++GL+ D + SGGQK+
Sbjct: 111 ------PREEIEE--------------RVAEALELVGLEELLDRPPFNL-----SGGQKQ 145
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV +L +L +DE + GLD ++ + LK++ T+I+ T+D
Sbjct: 146 RVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIV-------THD 198
Query: 410 L------FDDIILLSEGQIVYQGPRDNVLEFFEHM 438
L D +++L +G+I+ G + E +
Sbjct: 199 LELVLEYADRVVVLDDGKILADGDPAEIFNDAELL 233
|
Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 8e-15
Identities = 59/198 (29%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQETFA 939
L VS PG A++G SG+GK+TL+ LAG G + +S Q+
Sbjct: 351 LDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLD--QDEVR 408
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R C Q D H TV E+L + D +E+ +E L D +
Sbjct: 409 RRVSVCAQ-DAHLFDTTVRENLRLAR-----PDATD-------EELWAALERVGLADWLR 455
Query: 1000 GLPGVSGLSTE-----------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
LP GL T +R+RL +A L+A+ I+ +DEPT LDA A ++
Sbjct: 456 ALPD--GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLED 513
Query: 1049 VRNTVDTGRTVVCTIHQP 1066
+ +GRTVV H
Sbjct: 514 LLA-ALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 8e-15
Identities = 62/222 (27%), Positives = 99/222 (44%), Gaps = 32/222 (14%)
Query: 866 MPAEM--------KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917
MPAE KT G GE L +L V V + G A++G SG+GK+TL+ VLAG
Sbjct: 1 MPAENIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60
Query: 918 TGGYIEGDIKISGYP---KNQETFARVS----GYCEQNDIHSPYVTVYESLLYSAWLRLS 970
G++++ G P +++ A + G+ Q+ P +T E++ LR
Sbjct: 61 DPS--SGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE 118
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
S D++ L+E L + P LS +++R+ +A P ++F
Sbjct: 119 SSADSRAG------AKALLEAVGLGKRLTHYPA--QLSGGEQQRVALARAFAGRPDVLFA 170
Query: 1031 DEPTSGLD----ARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
DEPT LD + A ++ R + G T+V H P +
Sbjct: 171 DEPTGNLDRATGDKIADLLFALNR---ERGTTLVLVTHDPQL 209
|
Length = 228 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 8e-15
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 13/197 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQET 937
+++ VS G + L+G +GAGKTT ++ G R G I D IS P +
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARA 76
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY Q ++VY++L+ A L++ D+ ++R+ +E+ME ++ L DS
Sbjct: 77 -RRGIGYLPQEASIFRRLSVYDNLM--AVLQIRDDLSAEQREDRANELMEEFHIEHLRDS 133
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
M G S LS +R+R+ IA L ANP I +DEP +G+D + + R + + D+G
Sbjct: 134 M----GQS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGL 188
Query: 1058 TVVCTIH--QPSIDIFE 1072
V+ T H + ++ + E
Sbjct: 189 GVLITDHNVRETLAVCE 205
|
Length = 241 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 8e-15
Identities = 62/216 (28%), Positives = 103/216 (47%), Gaps = 26/216 (12%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KNQETFARVS-GYCEQND 949
G L+G +GAGK+T+ ++ G + G I + G P + AR G Q D
Sbjct: 66 SGECFGLLGPNGAGKSTIARMILGMTSPD--AGKITVLGVPVPARARLARARIGVVPQFD 123
Query: 950 IHSPYVTVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
TV E+LL + + +S T++ + + ++E L+S D+ V S LS
Sbjct: 124 NLDLEFTVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADARV-----SDLS 174
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
++RLT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H
Sbjct: 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH---- 230
Query: 1069 DIFEAFDEL---LLLKRGGRVIYAGPLGHESHKLIE 1101
E + L L + GR I G H LI+
Sbjct: 231 -FMEEAERLCDRLCVLEAGRKIAEG----RPHALID 261
|
Length = 340 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 9e-15
Identities = 55/203 (27%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
G A++G SG GK+TL+ ++AG + T G + D + P GY Q
Sbjct: 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPD------IGYVFQE 80
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
D P++TV +++ LR + + E++ELV L D P LS
Sbjct: 81 DALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK---YPHQ--LS 132
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1067
R+R+ IA L P ++ +DEP LDA + + +T +TV+ H
Sbjct: 133 GGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTH--- 189
Query: 1068 IDIFEAF---DELLLLKRGGRVI 1087
D+ EA D +++L I
Sbjct: 190 -DVDEAVYLADRVVVLSNRPGRI 211
|
Length = 248 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 17/200 (8%)
Query: 871 KTEGVGEDRLQ--LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 926
+ E + +R + L +S G + G +GAGKTTL+ +LAG R G +
Sbjct: 4 EAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV--YW 61
Query: 927 KISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
+ +E++ + Y +T E+L + W R + + E +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF--WQRFHGSGNAAT----IWEAL 115
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
V L L D LP V LS Q++R+ +A ++ + +DEP + LD A++
Sbjct: 116 AQVGLAGLED----LP-VGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLT 170
Query: 1047 RTVRNTVDTGRTVVCTIHQP 1066
+ G V+ T HQP
Sbjct: 171 ALMAAHAAQGGIVLLTTHQP 190
|
Length = 209 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 59/214 (27%), Positives = 102/214 (47%), Gaps = 14/214 (6%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
Q L V+ G L AL+G SG+GK+TL+ ++AG + G I+++G +
Sbjct: 12 SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD--SGRIRLNGQDATRVHA 69
Query: 939 A-RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R G+ Q+ ++TV +++ + +R K R V+E++ELV+L+ L D
Sbjct: 70 RDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKAR---VEELLELVQLEGLGDR 126
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
P + LS QR+R+ +A L P ++ +DEP LDA+ + +R D
Sbjct: 127 Y---P--NQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVH 181
Query: 1058 -TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T V H + E D ++++ G++ G
Sbjct: 182 VTTVFVTHDQE-EAMEVADRIVVMSN-GKIEQIG 213
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 60/213 (28%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKN 934
L VS G L AL+G SG+GKTTL+ ++AG R G I G + P
Sbjct: 13 GDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ 72
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS---DVDTKKRKMFVDEVMELVEL 991
+ R G+ Q+ ++TV++++ + ++ S + K V E+++LV+L
Sbjct: 73 E----RNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAK--VHELLKLVQL 126
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
L D P + LS QR+R+ +A L P ++ +DEP LDA+ + R +R
Sbjct: 127 DWLADR---YP--AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRR 181
Query: 1052 TVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
D T V H + E D ++++ +G
Sbjct: 182 LHDELHVTTVFVTHDQE-EALEVADRVVVMNKG 213
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 66/257 (25%), Positives = 102/257 (39%), Gaps = 68/257 (26%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R L VS + M LLGP GAGKTTLM LA SG I G ++ +
Sbjct: 11 GKKRALDGVSLTL-GPGMYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQ 66
Query: 242 VP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R Y+ Q + TVRE LD+ G+ P E
Sbjct: 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGI--------------------PSKE 106
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ A V D VL+++ L A +G +SGG ++RV + LVG
Sbjct: 107 VKA---RV-----------DEVLELVNLGDRAKKKIG-----SLSGGMRRRVGIAQALVG 147
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQM---------VHIL-DVTMIVALLQPAPETYD 409
++L +DE + GLD + L ++ HI+ DV +
Sbjct: 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLC----------- 196
Query: 410 LFDDIILLSEGQIVYQG 426
+ + +L++G++V++G
Sbjct: 197 --NQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 2e-14
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 61/266 (22%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
L D++ +K ++T L+G GAGK+TL+ L G L G+I G +L + P
Sbjct: 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPE 391
Query: 244 --QRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
++ +++SQ+ L G T+RE + LLA ++ EI
Sbjct: 392 AWRKQISWVSQNPYLFAG--TIRENI--------------LLARPDASDE--------EI 427
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
A + + ++V K GL DT++G E G+SGGQ +R+ L+
Sbjct: 428 IAALDQAGLL--------EFVPKPDGL----DTVIG-EGGAGLSGGQAQRLALARALLSP 474
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDDII 415
A++L +DE + LD+ T I + L++ T++V T+ L D I+
Sbjct: 475 ASLLLLDEPTAHLDAETEQIILQALQE--LAKQKTVLVI-------THRLEDAADADRIV 525
Query: 416 LLSEGQIVYQGPRDNVLE---FFEHM 438
+L G++V QG + + E + ++
Sbjct: 526 VLDNGRLVEQGTHEELSEKQGLYANL 551
|
Length = 559 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 2e-14
Identities = 56/188 (29%), Positives = 88/188 (46%), Gaps = 25/188 (13%)
Query: 866 MPAE--------MKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917
MPAE K+ G GE L +L V V + G AL+G SG+GK+TL+ +LAG
Sbjct: 1 MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD 60
Query: 918 TGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS 970
G G++ + G P +Q + A+ G+ Q+ + P + E++ A LR
Sbjct: 61 DGS--SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGE 118
Query: 971 SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
S ++ L+E L + LP + LS +++R+ +A P ++F
Sbjct: 119 SSRQSRNG------AKALLEQLGLGKRLDHLP--AQLSGGEQQRVALARAFNGRPDVLFA 170
Query: 1031 DEPTSGLD 1038
DEPT LD
Sbjct: 171 DEPTGNLD 178
|
Length = 228 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 2e-14
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 26/210 (12%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-NQETFARVS-GYCEQNDIHSPYV 955
L+G +GAGK+T+ +L G + G I + G P ++ ARV+ G Q D P
Sbjct: 35 LLGPNGAGKSTIARMLLGMISPD--RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92
Query: 956 TVYESLL-YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
TV E+LL + + +S T++ + + ++E L+S D V L LS ++R
Sbjct: 93 TVRENLLVFGRYFGMS----TREIEAVIPSLLEFARLESKADVRVAL-----LSGGMKRR 143
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1074
LT+A L+ +P ++ +DEPT+GLD A ++ +R+ + G+T++ T H E
Sbjct: 144 LTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH-----FMEEA 198
Query: 1075 DEL---LLLKRGGRVIYAGPLGHESHKLIE 1101
+ L L + GR I G H LI+
Sbjct: 199 ERLCDRLCVLESGRKIAEG----RPHALID 224
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 2e-14
Identities = 53/194 (27%), Positives = 83/194 (42%), Gaps = 22/194 (11%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE 936
L +V+ V RPG + L+G +GAGKTTL +++ G + + G + I+G P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLP-PHR 75
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLL--YSAWLRLSSDVDTKKRKMFVDEVMELVE--LK 992
Q P +TV E++ A L LS + + + E E L+
Sbjct: 76 IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135
Query: 993 SLNDSMVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
VGL LS Q++RL IA L P ++ +DEP +GL+ +
Sbjct: 136 -----FVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 1048 TVRNTVDT-GRTVV 1060
+R D G T++
Sbjct: 191 LIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-14
Identities = 53/202 (26%), Positives = 97/202 (48%), Gaps = 16/202 (7%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI----- 928
G G R Q+L ++ PG + L G SG+GKTTL+ ++ G ++ EG +K+
Sbjct: 12 GHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ--EGSLKVLGQEL 69
Query: 929 SGYPKNQETFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
G + + R + GY Q ++T +++ + L L ++ ++ + ++E
Sbjct: 70 YGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARAMLE 127
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
V L D + P LS Q++R+ IA LV P ++ DEPT+ LD+++ V+
Sbjct: 128 AV---GLGDHLDYYPH--NLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVE 182
Query: 1048 TVRNTV-DTGRTVVCTIHQPSI 1068
++ + G T++ H I
Sbjct: 183 LMQKLAREQGCTILIVTHDNRI 204
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 67/250 (26%), Positives = 106/250 (42%), Gaps = 57/250 (22%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---- 240
+L+DVS VKP ++GP GAGK+TL+ A+ G L SG I G L +
Sbjct: 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGKPLEKERKR 69
Query: 241 --FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+VPQR D ++VR+ + +G+ L LS+ +K
Sbjct: 70 IGYVPQR---RSIDRDF---PISVRDVV-----LMGLYGHKGLFRRLSKADKAKV----- 113
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D L+ +GL AD +G+ +SGGQ++RV LV
Sbjct: 114 --------------------DEALERVGLSELADRQIGE-----LSGGQQQRVLLARALV 148
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIIL 416
++L +DE G+D T I + L+++ +T++V L + FD ++L
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVL---EYFDRVLL 204
Query: 417 LSEGQIVYQG 426
L +V G
Sbjct: 205 L-NRTVVASG 213
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 3e-14
Identities = 64/254 (25%), Positives = 106/254 (41%), Gaps = 51/254 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+L+D+S + P ++G G+GK+TL+ L G G+I G +LN+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLAS 544
Query: 245 --RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R Y+ Q L G ++RE + P+ +
Sbjct: 545 LRRQVGYVLQDPFLFSG--SIRENIALG-------------------------NPEATDE 577
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++A +AG ++ I L + DT VG E +SGGQ++R+ L+
Sbjct: 578 EIIEAAQLAG-----AHEF---IENLPMGYDTPVG-EGGANLSGGQRQRLALARALLSKP 628
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA--PETYDLFDDIILLSE 419
+L +DE ++ LD T I + L Q + T+I+ A T D II+L +
Sbjct: 629 KILLLDEATSALDPETEAIILQNLLQ--ILQGRTVIII----AHRLSTIRSADRIIVLDQ 682
Query: 420 GQIVYQGPRDNVLE 433
G+IV QG + +L
Sbjct: 683 GKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 3e-14
Identities = 68/227 (29%), Positives = 109/227 (48%), Gaps = 26/227 (11%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFA 939
Q LH+V G + AL+G SG+GK+TL+ L+G TG I++ G +E
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQRE--G 75
Query: 940 RVSGYCEQNDIHSPYV----------TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
R++ ++ ++ Y+ +V E++L A L S + + +
Sbjct: 76 RLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGA---LGSTPFWRTCFSWFTREQKQR 132
Query: 990 ELKSLNDSMVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
L++L + VG+ VS LS Q++R+ IA L+ +I DEP + LD +A I
Sbjct: 133 ALQAL--TRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARI 190
Query: 1045 VMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
VM T+R+ G TVV T+HQ +D + E ++ R G V Y G
Sbjct: 191 VMDTLRDINQNDGITVVVTLHQ--VDYALRYCERIVALRQGHVFYDG 235
|
Length = 262 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 29/221 (13%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
L VS G L ++G SG GKTTL++++AG T G I+++G R
Sbjct: 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT--PSRGSIQLNGRRIEGPGAER- 76
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
G QN+ P++ V +++ + LR ++ +R+ +++ LV L+ +
Sbjct: 77 -GVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-- 130
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTG 1056
LS R+R+ IA L P ++ +DEP LD A+ ++ + +TG
Sbjct: 131 ---WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALD----ALTREQMQELLLDLWQETG 183
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRG-GRVIYAGPLG 1093
+ V+ H DI EA L++L G GRV+ PL
Sbjct: 184 KQVLLITH----DIEEALFLATRLVVLSPGPGRVVERLPLD 220
|
Length = 259 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 3e-14
Identities = 69/271 (25%), Positives = 113/271 (41%), Gaps = 56/271 (20%)
Query: 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
L H K+RS+ ++D+S + + LG GAGK+T + L G L L SGK+
Sbjct: 26 LNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL---LPTSGKV- 81
Query: 233 YCGHELNEFVPQRT-CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
+N P R Y+ L M + L + L E+L +
Sbjct: 82 ----RVNGKDPFRRREEYLRSIGL---VMGQKLQLWW---DLPALDSLEVLKLIYE---- 127
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
PD D F + + D++ +IL L+ + +R+ +S GQ+ R
Sbjct: 128 ---IPD---DEFAERL-----------DFLTEILDLE----GFLKWPVRK-LSLGQRMRA 165
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ VL++DE + GLD + I +FLK+ T+++ T+ F
Sbjct: 166 ELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLT-------THI-F 217
Query: 412 DDI-------ILLSEGQIVYQGPRDNVLEFF 435
DDI +L+ +GQ+V+ G + E F
Sbjct: 218 DDIATLCDRVLLIDQGQLVFDGTLAQLQEQF 248
|
Length = 325 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-14
Identities = 56/192 (29%), Positives = 82/192 (42%), Gaps = 16/192 (8%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-----YPKNQET 937
LH VS R G L G SGAGKTTL+ +L G T G ++I+G Q
Sbjct: 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS--RGQVRIAGEDVNRLRGRQLP 75
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R G Q+ P TVYE++ L +V KK + V + L
Sbjct: 76 LLRRRIGVVFQDFRLLPDRTVYENV------ALPLEVRGKKEREIQRRVGAALRQVGLEH 129
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P LS +++R+ IA +V +P ++ DEPT LD + ++ ++ G
Sbjct: 130 KADAFPEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187
Query: 1057 RTVVCTIHQPSI 1068
TV+ H S+
Sbjct: 188 TTVIVATHDLSL 199
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 4e-14
Identities = 71/277 (25%), Positives = 110/277 (39%), Gaps = 64/277 (23%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +LKDV+ ++ +LLGP G GK+TL+ +AG SG+I G ++ +
Sbjct: 15 SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLP 71
Query: 243 PQ-RTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
P+ R A + Q H MTV E + F L K G+
Sbjct: 72 PEKRGIAMVFQNYALYPH------MTVYENIAFG---L----------------KLRGVP 106
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
EID K V V K+LGL+ + +SGGQ++RV
Sbjct: 107 KA-EID---KRVKE-----------VAKLLGLEHLLNR-----KPLQLSGGQRQRVALAR 146
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
LV V +DE + LD+ + +K++ L T I E L D I+
Sbjct: 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIV 205
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
++++G+I G + ++ P VA F+
Sbjct: 206 VMNDGRIQQVGTPLEL--------YERPANLFVAGFI 234
|
Length = 338 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 70/279 (25%), Positives = 114/279 (40%), Gaps = 54/279 (19%)
Query: 180 KKR--SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
KR S + L DV+ V + LLGP G+GK+TL+ +AG D SG+I G +
Sbjct: 7 SKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQD 63
Query: 238 LNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ R ++ QH +TVR+ + F G+ R K
Sbjct: 64 ATRVHARDRKIGFVFQHYALFKHLTVRDNIAF-----GLEIR----------------KH 102
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+ + +L+++ L +GD +SGGQ++RV
Sbjct: 103 PKA-------------KIKARVEELLELVQL-----EGLGDRYPNQLSGGQRQRVALARA 144
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L VL +DE LD+ ++ +L+++ + VT V + E ++ D I++
Sbjct: 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT-VFVTHDQEEAMEVADRIVV 203
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
+S G+I G D E ++H P V FL EV
Sbjct: 204 MSNGKIEQIGSPD---EVYDH-----PANPFVMSFLGEV 234
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 5e-14
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 37/230 (16%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYP- 932
D +L ++S +PG + ++G SG+GK+TL ++ Y+ G + + G+
Sbjct: 11 KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRF----YVPENGRVLVDGHDL 66
Query: 933 --KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME--- 987
+ R G Q E++L++ +R ++ M ++ V+E
Sbjct: 67 ALADPAWLRRQVGVVLQ-----------ENVLFNRSIR--DNIALADPGMSMERVIEAAK 113
Query: 988 -------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+ EL D++VG G GLS QR+R+ IA L+ NP I+ DE TS LD
Sbjct: 114 LAGAHDFISELPEGYDTIVGEQGA-GLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ +MR + + GRTV+ H+ S + A D +++++ GR++ G
Sbjct: 173 SEHAIMRNMHDICA-GRTVIIIAHRLST-VKNA-DRIIVME-KGRIVEQG 218
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 5e-14
Identities = 74/309 (23%), Positives = 138/309 (44%), Gaps = 48/309 (15%)
Query: 854 SLTFDNMS-YFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912
+L + ++ F D A + ++S PG + L+G +GAGKTT +
Sbjct: 2 ALEIEGVTKSFGDKKA--------------VDNISFEVPPGEIFGLLGPNGAGKTTTFRM 47
Query: 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYC-EQNDIHSPYVTVYESLLYSAWLRLSS 971
+ G EG+I +G P +QE R+ GY E+ ++ P +TV + L Y A L+
Sbjct: 48 ILGLLE--PTEGEITWNGGPLSQEIKNRI-GYLPEERGLY-PKMTVEDQLKYLAELK--- 100
Query: 972 DVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030
+ + + + +E +E+ + LS ++++ ++ P ++ +
Sbjct: 101 GMPKAEIQKKLQAWLERLEIVGKKTKK------IKELSKGNQQKIQFISAVIHEPELLIL 154
Query: 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
DEP SGLD ++ + + G T++ + H+ + E D LL+LK+G V+Y G
Sbjct: 155 DEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLY-G 212
Query: 1091 PLGH------------ESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDF 1138
+ ES +E +PG+ KI E + + W +++ N +V ++ F
Sbjct: 213 TVEDIRRSFGKKRLVIESDLSLEELANIPGILKITETKDGS-WRIQIENETVAREI---F 268
Query: 1139 AEVYADSSL 1147
EV D +
Sbjct: 269 QEVARDGYI 277
|
Length = 300 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 6e-14
Identities = 69/230 (30%), Positives = 107/230 (46%), Gaps = 33/230 (14%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKIS 929
G G R+ L+ +S G +TAL+G +G GK+TL+ A R ++G GD IS
Sbjct: 11 GYGTKRI--LNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPIS 67
Query: 930 GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLY------SAWLRLSSDVDTKKRKMFVD 983
Q AR Q+ + +TV E + Y S W RLS++ V+
Sbjct: 68 MLSSRQ--LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAE-----DNARVN 120
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ ME + L D + + LS QR+R +A+ L + ++ +DEPT+ LD
Sbjct: 121 QAMEQTRINHLADRRL-----TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175
Query: 1044 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEA---FDELLLLKRGGRVIYAG 1090
+MR +R G+TVV +H D+ +A D L++L G V+ G
Sbjct: 176 ELMRLMRELNTQGKTVVTVLH----DLNQASRYCDHLVVLA-NGHVMAQG 220
|
Length = 255 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 1e-13
Identities = 64/263 (24%), Positives = 109/263 (41%), Gaps = 58/263 (22%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ L DVS V+P + L+GP GAGKTTL ++G L SG + + G ++ P
Sbjct: 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPP 69
Query: 244 QRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
I Q E+TV E + + + T LL +RRE++
Sbjct: 70 HEIARLGIGRTFQIPRLFPELTVLENVMVAAQA---RTGSGLLLARARREERE------- 119
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 120 ------ARERAEE--------LLERVGLADLADRPAGE-----LSYGQQRRLEIARALAT 160
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYD 409
+L +DE + GL+ T ++ + ++++ H +DV M
Sbjct: 161 DPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVM------------S 208
Query: 410 LFDDIILLSEGQIVYQGPRDNVL 432
L D + +L +G+++ +G D V
Sbjct: 209 LADRVTVLDQGRVIAEGTPDEVR 231
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 56/200 (28%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 933
G L +S G L G +G+GKTTL+ ++AG G I+ D P
Sbjct: 13 GGR--VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPD 70
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
A Y + P +TV E+L + W + + +E V L
Sbjct: 71 ----VAEACHYLGHRNAMKPALTVAENLEF--WAAFLGGEEL-----DIAAALEAVGLAP 119
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L LP LS Q++R+ +A LV+N I +DEPT+ LDA A A+ +R +
Sbjct: 120 LAH----LPF-GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL 174
Query: 1054 DTGRTVVCTIHQPSIDIFEA 1073
G V+ H P + + A
Sbjct: 175 AQGGIVIAATHIP-LGLPGA 193
|
Length = 207 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 2e-13
Identities = 46/189 (24%), Positives = 80/189 (42%), Gaps = 15/189 (7%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 926
+ G ++ L VS + G L+G SG+GK+TL + G + T G +G
Sbjct: 9 VSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKD 68
Query: 927 KISGYPKNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
+ + ++ + Q+ + S P +T+ E + + +++ V
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLL 127
Query: 985 VMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
++ V L LN P LS QR+R+ IA L NP ++ DEPTS LD
Sbjct: 128 LLVGVGLPEEVLNR----YP--HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQ 181
Query: 1043 AIVMRTVRN 1051
A ++ ++
Sbjct: 182 AQILDLLKK 190
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 61/258 (23%), Positives = 107/258 (41%), Gaps = 51/258 (19%)
Query: 172 GLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI 231
L V+ LK VS ++ ++GP G+GK+TL L + G L D SG++
Sbjct: 5 NLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTL-LNILGGL--DRPTSGEV 61
Query: 232 TYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREK 290
G +++ +++ +E F R +G V + LL +L+ E
Sbjct: 62 RVDGTDIS-------------------KLSEKELAAFRRRHIGFVFQSFNLLPDLTALEN 102
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
++ + V +E + +L+ +GL + E+ SGGQ++R
Sbjct: 103 ---------VELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPS-EL----SGGQQQR 148
Query: 351 VTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
V L ++ DE TG LDS T ++ + L+++ T++V T+D
Sbjct: 149 VAIARALANDPKIILADE-PTGNLDSETGKEVMELLRELNKEAGTTIVVV-------THD 200
Query: 410 -----LFDDIILLSEGQI 422
D II L +G+I
Sbjct: 201 PELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-13
Identities = 58/248 (23%), Positives = 96/248 (38%), Gaps = 86/248 (34%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L D+S ++ + +LGP GAGK+TL+ LAG L SG+I G +L
Sbjct: 13 TVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS---SGEILLDGKDL------ 63
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
A LS +E
Sbjct: 64 --------------------------------------ASLSPKE-------------LA 72
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+ +A Q L++LGL AD + +SGG+++RV L +L
Sbjct: 73 RKIAYVPQ--------ALELLGLAHLADRPFNE-----LSGGERQRVLLARALAQEPPIL 119
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDIILLS 418
+DE ++ LD + ++ + L+++ T+++ L +DL D +ILL
Sbjct: 120 LLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVL-------HDLNLAARYADRVILLK 172
Query: 419 EGQIVYQG 426
+G+IV QG
Sbjct: 173 DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 3e-13
Identities = 76/325 (23%), Positives = 129/325 (39%), Gaps = 50/325 (15%)
Query: 772 WIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSS 831
+ VGAL + L + +G+ S + QRAS A
Sbjct: 265 SLTVGALAAFILYLLRLL----TPILQLGEVVSLL-------QRASA--------AAERL 305
Query: 832 SKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFR 891
+ + V + L S+ F+N+S+ + +L +S
Sbjct: 306 FELLDEEPEVEDPPDPLKDTIGSIEFENVSFSYP------------GKKPVLKDISFSIE 353
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQETFA---RVSGYC 945
PG A++G SG+GK+TL+ +L + G+I I G + + G
Sbjct: 354 PGEKVAIVGPSGSGKSTLIKLLLR-----LYDPTSGEILIDGIDIRDISLDSLRKRIGIV 408
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
Q D T+ E++ +++ + E + L D++VG GV
Sbjct: 409 SQ-DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIA--NLPDGYDTIVGERGV- 464
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS QR+RL IA L+ NP I+ +DE TS LD A++ ++ + GRT + H+
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK-GRTTLIIAHR 523
Query: 1066 PSIDIFEAFDELLLLKRGGRVIYAG 1090
S + D +++L GR++ G
Sbjct: 524 LS--TIKNADRIIVLDN-GRIVERG 545
|
Length = 567 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-13
Identities = 50/161 (31%), Positives = 79/161 (49%), Gaps = 15/161 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L VS + G L+G SG GKTTL+ ++AG T G I I+ P ++
Sbjct: 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVN 75
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
V QN P++TV+E++ + L+ + K+R V E ++LV+L+ +
Sbjct: 76 TVF----QNYALFPHLTVFENIAFGLRLKKLPKAEIKER---VAEALDLVQLEGYANRKP 128
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
S LS Q++R+ IA LV P ++ +DEP LD +
Sbjct: 129 -----SQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLK 164
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 55/190 (28%), Positives = 94/190 (49%), Gaps = 18/190 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
++++ VS + G + L+G +GAGKTT ++ G + G I I+ P ++
Sbjct: 14 KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKR- 72
Query: 938 FARVS-GYCEQNDIHSPY--VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
AR+ GY Q S + +TV E++L A L + K+R+ ++E++E + L
Sbjct: 73 -ARLGIGYLPQE--ASIFRKLTVEENIL--AVLEIRGL-SKKEREEKLEELLEEFHITHL 126
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
S S LS +R+R+ IA L NP + +DEP +G+D A + + ++ D
Sbjct: 127 RKSKA-----SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD 181
Query: 1055 TGRTVVCTIH 1064
G V+ T H
Sbjct: 182 RGIGVLITDH 191
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 6e-13
Identities = 65/240 (27%), Positives = 99/240 (41%), Gaps = 25/240 (10%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGY 931
V + +L VS G +T ++G +G GKTTL+ L G K+G I+
Sbjct: 8 VYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67
Query: 932 PKNQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
P R Y Q P +TV E+LL + RK+ DE+ EL
Sbjct: 68 P----PHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL-----PRRSRKI-PDEIYEL 117
Query: 989 VE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LK + G LS Q+++L IA LV P ++ +DEPT G+ + R
Sbjct: 118 FPVLKEMLGRRGGD-----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDI-FEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAV 1106
+R G + + Q +D E D +++R GRV+ +G + + AV
Sbjct: 173 VIRRLRAEGGMAILLVEQ-YLDFARELADRYYVMER-GRVVASGAGDELDEDKVRRYLAV 230
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 57/207 (27%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ---E 936
+L +VS PG A++G SG+GK+TL ++ G R T G +++ G +Q
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT----SGRVRLDGADISQWDPN 72
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
GY Q+D ++F + E +
Sbjct: 73 ELGDHVGYLPQDD-----------------------------ELFSGSIAENI------- 96
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
LS QR+RL +A L NP I+ +DEP S LD + + + G
Sbjct: 97 ----------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAG 146
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRG 1083
T + H+P + D +L+L+ G
Sbjct: 147 ATRIVIAHRPE--TLASADRILVLEDG 171
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 7e-13
Identities = 65/256 (25%), Positives = 101/256 (39%), Gaps = 61/256 (23%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
++ S K+ IL D+S + + L G GAGKTTL LAG L K +SG I
Sbjct: 4 NISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAG-LIK--ESSGSILLN 60
Query: 235 GHELNEFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G + +++ Y+ Q D +VRE L L EL +QA
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG------------LKELDAGNEQA- 107
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ VLK L L + +SGGQK+R+
Sbjct: 108 -------------------------ETVLKDLDLYALK-----ERHPLSLSGGQKQRLAI 137
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-F- 411
L+ ++L DE ++GLD ++ + +++ + +IV T+D F
Sbjct: 138 AAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE-LAAQGKAVIVI-------THDYEFL 189
Query: 412 ----DDIILLSEGQIV 423
D ++LL+ G IV
Sbjct: 190 AKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 7e-13
Identities = 68/220 (30%), Positives = 107/220 (48%), Gaps = 24/220 (10%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK---NQETF 938
LLH +S F G +T L+G +G+GK+TL+ +L GR EG+I + P + + F
Sbjct: 26 LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKML-GRHQPPS-EGEILLDAQPLESWSSKAF 83
Query: 939 ARVSGYCEQNDIHSPYVTVYESLL------YSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
AR Y Q + +TV E + + A R + D +K V+E + LV LK
Sbjct: 84 ARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAA-DREK----VEEAISLVGLK 138
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV-RN 1051
L + V LS +R+R IA+ + + + +DEPTS LD V+ V R
Sbjct: 139 PLAHRL-----VDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRL 193
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ + G TV+ +H I++ + + L+ RGG +I G
Sbjct: 194 SQERGLTVIAVLH--DINMAARYCDYLVALRGGEMIAQGT 231
|
Length = 265 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 8e-13
Identities = 56/219 (25%), Positives = 94/219 (42%), Gaps = 19/219 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQET 937
+L +S PG A++G +GAGKTTL+ +L G GD+ + G +
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS--SGDVTLLGRRFGKGETIFE 103
Query: 938 FARVSGYC--EQNDIHSPYVTVYESLL--YSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ G E ++ TV + +L + A + + + T + ++EL+ K
Sbjct: 104 LRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH 163
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR--N 1051
L D G LS +++R+ IA LV +P ++ +DEP GLD A ++ +
Sbjct: 164 LADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
++ H +I F LLLK G V+ G
Sbjct: 219 ASPGAPALLFVTHHAE-EIPPCFTHRLLLK-EGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 65/261 (24%), Positives = 104/261 (39%), Gaps = 64/261 (24%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ R L DVS V+P R LLGP GAGK+TL L G+I+ GH+L
Sbjct: 13 ARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRR-A 68
Query: 243 PQRTCAYI------SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
P+ A + DL +++VR+ L + + L LSR E +A I
Sbjct: 69 PRAALARLGVVFQQPTLDL---DLSVRQNLRY----------HAALHGLSRAEARARIAE 115
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
L LGL AD V R ++GG ++RV
Sbjct: 116 L------------------------LARLGLAERADDKV-----RELNGGHRRRVEIARA 146
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPETYDLF 411
L+ +L +DE + GLD ++ I ++ + +L T +V ++
Sbjct: 147 LLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEAD------- 199
Query: 412 DDIILLSEGQIVYQGPRDNVL 432
D +++L G+++ G +
Sbjct: 200 DRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 67/247 (27%), Positives = 113/247 (45%), Gaps = 53/247 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-- 244
L +VS ++ ++G G+GK+TL+ LAG SG + G ++ + P
Sbjct: 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPT---SGSVLLDGTDIRQLDPADL 76
Query: 245 -RTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID- 301
R Y+ Q L +G T+R+ + LG P D
Sbjct: 77 RRNIGYVPQDVTLFYG--TLRDNI-----TLG----------------------APLADD 107
Query: 302 -AFMKAVAVAGQETSLVTDYVLKI-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++A +AG VTD+V K GLD +G E RG+SGGQ++ V L+
Sbjct: 108 ERILRAAELAG-----VTDFVNKHPNGLD----LQIG-ERGRGLSGGQRQAVALARALLN 157
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
+L +DE ++ +D ++ ++ + L+Q+ + D T+I+ +P+ DL D II++
Sbjct: 158 DPPILLLDEPTSAMDMNSEERLKERLRQL--LGDKTLIIITHRPS--LLDLVDRIIVMDS 213
Query: 420 GQIVYQG 426
G+IV G
Sbjct: 214 GRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-12
Identities = 74/276 (26%), Positives = 125/276 (45%), Gaps = 30/276 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF-- 938
L VS RPG + AL+G +GAGK+TLM +L+G G+I I G P +
Sbjct: 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD----SGEILIDGKPVAFSSPRD 79
Query: 939 ARVSG----YCEQNDIHSPYVTVYESL-LYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
A +G + E + + P ++V E++ L R +D K + E++ + L
Sbjct: 80 ALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDI 137
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
D++VG LS QR+ + IA L + ++ +DEPT+ L + + +R
Sbjct: 138 DPDTLVG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLK 192
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES--HKLIEYF---EAVPG 1108
G ++ H+ ++FE D + +L+ GRV+ P E+ +L+ E
Sbjct: 193 AQGVAIIYISHRLD-EVFEIADRITVLRD-GRVVGTRPTAAETSEDELVRLMVGRELEDL 250
Query: 1109 VPKIKEAYNPATWMLEVSNISVENQL-GIDFAEVYA 1143
P+ E +LEV N+S ++ + F V A
Sbjct: 251 FPEPPEEGIGEP-VLEVRNLSGGGKVRDVSF-TVRA 284
|
Length = 500 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 1e-12
Identities = 67/209 (32%), Positives = 103/209 (49%), Gaps = 30/209 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KNQETFAR----VSGY 944
G + +G +GAGKTT + +L+G + T G+++++G P K ++ F R V G
Sbjct: 47 GEIVGFIGPNGAGKTTTLKILSGLLQPT----SGEVRVAGLVPWKRRKKFLRRIGVVFGQ 102
Query: 945 CEQN--DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
Q D+ V +S L D+ + K +DE+ EL++L+ L D+
Sbjct: 103 KTQLWWDL-----PVIDSF---YLLAAIYDLPPARFKKRLDELSELLDLEELLDT----- 149
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVC 1061
V LS QR R IA L+ P I+F+DEPT GLD A + ++ + G TV+
Sbjct: 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T H DI EA +L+ GR++Y G
Sbjct: 210 TSHYMK-DI-EALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 1e-12
Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 23/204 (11%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYP-K 933
E + ++L V+ + G + A+MG +G+GK+TL + G Y EG+I G
Sbjct: 14 EGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP--KYEVTEGEILFDGEDIL 71
Query: 934 NQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
R Q + P VT + L + R + + + E EL+
Sbjct: 72 ELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLG 131
Query: 991 LK------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
L +N+ G S ++KR I L+ P + +DEP SGLD A I
Sbjct: 132 LDEEFLERYVNE---------GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKI 182
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSI 1068
V + + GR V+ H +
Sbjct: 183 VAEGINALREEGRGVLIITHYQRL 206
|
Length = 251 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 60/191 (31%), Positives = 97/191 (50%), Gaps = 18/191 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
++++ VS G + L+G +GAGKTT ++ G R G I D I+ P ++
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKR- 76
Query: 938 FARVS-GYCEQNDIHSPY--VTVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKS 993
AR+ GY Q S + +TV ++++ A L + D+ +RK +D ++E +
Sbjct: 77 -ARLGIGYLPQE--ASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEFHITH 131
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L DS S LS +R+R+ IA L ANP I +DEP +G+D A + R +++
Sbjct: 132 LRDS----KAYS-LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK 186
Query: 1054 DTGRTVVCTIH 1064
D G V+ T H
Sbjct: 187 DRGIGVLITDH 197
|
Length = 243 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 1e-12
Identities = 45/191 (23%), Positives = 78/191 (40%), Gaps = 16/191 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
L +S G + G +G GKTTL+ +LAG R G + + + +
Sbjct: 11 GERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTAL--AEQR 68
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
+ R Y P ++ E+L + W + +++ + V L
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHF--WAAIHGGAQRT-----IEDALAAVGLTGFE 121
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D LP + LS Q++RL +A ++ + +DEPT+ LD A++ +R +
Sbjct: 122 D----LP-AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLAR 176
Query: 1056 GRTVVCTIHQP 1066
G V+ T HQ
Sbjct: 177 GGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 16/197 (8%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQETFARVSGYCEQNDIHSP 953
++G +G+GK+ L++ +AG + G I + K I+ P + Y QN P
Sbjct: 29 VILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDI----SYVPQNYALFP 84
Query: 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013
++TVY+++ Y R + +++ V E+ E++ + L + LS +++
Sbjct: 85 HMTVYKNIAYGLKKRKVDKKEIERK---VLEIAEMLGIDHLLNRKPET-----LSGGEQQ 136
Query: 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA 1073
R+ IA LV NP I+ +DEP S LD R + ++ V + + +
Sbjct: 137 RVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWAL 196
Query: 1074 FDELLLLKRGGRVIYAG 1090
D++ ++ G++I G
Sbjct: 197 ADKVAIM-LNGKLIQVG 212
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 2e-12
Identities = 33/95 (34%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 179 SKK-RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
SK+ L D+S V+ + LLGP GAGKTTL+ + G L D SG+I G +
Sbjct: 7 SKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD---SGEIKVLGKD 63
Query: 238 LNEFVPQ--RTCAYISQHDLHHGEMTVRETLDFSG 270
+ + + R Y+ + + +TVRE L SG
Sbjct: 64 IKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSG 98
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-12
Identities = 54/217 (24%), Positives = 95/217 (43%), Gaps = 40/217 (18%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGY-P-KNQETFARVSGYCEQ 947
G + +G +GAGK+T + +L G T G + +++G P + +E + R G
Sbjct: 49 KGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV----RVNGKDPFRRREEYLRSIGLV-- 102
Query: 948 NDIHSPYVTVYESLLYSAW----------LRLSSDVDTKKRKMFVDEVMELVEL-KSLND 996
+ L W L+L ++ + +D + E+++L L
Sbjct: 103 -------MGQKLQLW---WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKW 152
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1055
+ LS QR R +A L+ P ++F+DEPT GLD A A + ++ +
Sbjct: 153 PV------RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEER 206
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
TV+ T H DI D +LL+ + G++++ G L
Sbjct: 207 QATVLLTTHIFD-DIATLCDRVLLIDQ-GQLVFDGTL 241
|
Length = 325 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-12
Identities = 55/208 (26%), Positives = 94/208 (45%), Gaps = 19/208 (9%)
Query: 892 PGV-LTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQ-ETFARVSGYC 945
PG +TA+ G SG+GKTTL+ ++AG R G + G R GY
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
Q P+++V +L Y +R++ + V+EL+ + L + G
Sbjct: 81 FQEARLFPHLSVRGNLRYGMK-----RARPSERRISFERVIELLGIGHLLGRLPG----- 130
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTVVCTIH 1064
LS +++R+ I L+++P ++ MDEP + LD R I+ R + G ++ H
Sbjct: 131 RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSH 190
Query: 1065 QPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
S+ + +++ GRV AGP+
Sbjct: 191 --SLQEVLRLADRVVVLEDGRVAAAGPI 216
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 49/169 (28%), Positives = 83/169 (49%), Gaps = 25/169 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQETF 938
L+ +S PG L L+G +GAGKTTLMDV+ G R G +GD ++ P+++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHR--I 78
Query: 939 ARVSGYCEQNDIHSPY--VTVYESLLYS--------AWLRLSSDVDTKKRKMFVDEVMEL 988
AR G + + + +TV E+L + A L + ++R +DE++
Sbjct: 79 ARA-GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRR---IDELLAT 134
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
+ L D + L LS Q++ L I + L +P ++ +DEP +G+
Sbjct: 135 IGLGDERDRLAAL-----LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
|
Length = 249 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 2e-12
Identities = 44/164 (26%), Positives = 75/164 (45%), Gaps = 19/164 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISG-----YPKNQ 935
LL +V+ G + LMG SG GK+TL+ + G G + G++ ++ P Q
Sbjct: 17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R G Q+ + P+++V ++LL++ L + + R+ + +E L
Sbjct: 77 ----RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAF 128
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
P + LS QR R+ + L+A P + +DEP S LD
Sbjct: 129 HQ---DP--ATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
|
Length = 213 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-12
Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 41/235 (17%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 929
+ +L VS G A++G SG+GK+T++ DV +G I+G I
Sbjct: 11 DPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI---LIDG-QDIR 66
Query: 930 GYPKNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVD---TKKRKM 980
++ R G Q ND T+ ++ Y R +D + K
Sbjct: 67 EV--TLDSLRRAIGVVPQDTVLFND------TIGYNIRYG---RPDATDEEVIEAAKAAQ 115
Query: 981 FVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
D++M + D++VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 116 IHDKIMRFPDGY---DTIVGERGLK-LSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHE 1095
+ +R V GRT + H+ S I A D++++LK GR++ G HE
Sbjct: 172 TEREIQAALR-DVSKGRTTIVIAHRLS-TIVNA-DKIIVLK-DGRIVERG--THE 220
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 56/238 (23%), Positives = 87/238 (36%), Gaps = 52/238 (21%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-----ELNEFVP--QRTCA 248
+T + G GAGK+TL+ +AG D G I G +P QR
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIG 78
Query: 249 YISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA 308
+ Q + VRE L F L RE + I D +D
Sbjct: 79 LVFQQYALFPHLNVRENLAFG------------LKRKRNREDR--ISVDELLDLL----- 119
Query: 309 VAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368
L+ Y ++ SGG+K+RV L +L +DE
Sbjct: 120 ---GLDHLLNRYPAQL-------------------SGGEKQRVALARALAAQPELLLLDE 157
Query: 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ LD + Q+ LKQ+ L++ +I + E L D I+++ +G++ Y G
Sbjct: 158 PFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 3e-12
Identities = 62/263 (23%), Positives = 100/263 (38%), Gaps = 60/263 (22%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
P+ SV+ L DVS +K L+G G+GK+TL A+ G L K SG I + G +
Sbjct: 12 PTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLK--PTSGSIIFDGKD 68
Query: 238 LNEFVPQ------RTCAYISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
L + + + + Q + + MT+ E + R G ++ E E
Sbjct: 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEA-VLL 127
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKK 349
G+ E V + +SGGQ++
Sbjct: 128 LLVGVGLPEE-----------------------------------VLNRYPHELSGGQRQ 152
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409
RV L +L DE ++ LD S QI LK++ L +T++ T+D
Sbjct: 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI-------THD 205
Query: 410 L------FDDIILLSEGQIVYQG 426
L D + ++ G+IV +G
Sbjct: 206 LGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 3e-12
Identities = 53/176 (30%), Positives = 85/176 (48%), Gaps = 12/176 (6%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--KNQETFARVSGYCEQN 948
RPG L+GV+GAGKTT +L G T GD ++G N + GYC Q
Sbjct: 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTT--VTSGDATVAGKSILTNISDVHQNMGYCPQF 2020
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
D +T E L A LR V ++ + + ++ + L D + G S
Sbjct: 2021 DAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAGT-----YS 2072
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
+++L+ A+ L+ P ++ +DEPT+G+D +A ++ T+ + + GR VV T H
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSH 2128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 66/223 (29%), Positives = 115/223 (51%), Gaps = 34/223 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGG-YIEGDIKISGYPKNQETF 938
L VS G +T+++G +GAGK+TL M L + +G I+G ++++ P ++E
Sbjct: 17 LDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDG-LELTSTP-SKELA 74
Query: 939 ARVSGYCEQNDIHSPYVTVYESLL------YSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
++S ++N I+S +TV L+ YS RL TK+ + ++E +E + L+
Sbjct: 75 KKLSILKQENHINS-RLTV-RDLVGFGRFPYSQG-RL-----TKEDRRIINEAIEYLHLE 126
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L+D + LS QR+R IA+ L + + +DEP + LD + + +M+ +R
Sbjct: 127 DLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRL 181
Query: 1053 VDT-GRTVVCTIHQPSIDIFEA---FDELLLLKRGGRVIYAGP 1091
D G+T+V +H DI A D ++ LK G+V+ G
Sbjct: 182 ADELGKTIVVVLH----DINFASCYSDHIVALKN-GKVVKQGS 219
|
Length = 252 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 69.3 bits (169), Expect = 4e-12
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 21/216 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-----RKTGGYIEGDIKISGYPKNQE 936
+L +S G L AL+G SG GKTTL+ +AG TG D ++ P ++
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
A + QN P++ V +++ + + D +R V + ++L L D
Sbjct: 80 GLALLF----QNYALFPHLKVEDNVAFGLRAQKMPKADIAER------VADALKLVGLGD 129
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT- 1055
+ LP + LS ++R+ IA + P ++ +DEP S LDA A + + +
Sbjct: 130 AAAHLP--AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEEL 187
Query: 1056 -GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
T++C H D D+ ++K GR+ G
Sbjct: 188 PELTILCVTHDQD-DALTLADKAGIMKD-GRLAAHG 221
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 66/259 (25%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL- 238
K++V+ + VS VKP +T LLGP GAGKTT + LAG L D +G T G ++
Sbjct: 14 VKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVV 70
Query: 239 -NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+R ++S + +T RE L++ G L E A +
Sbjct: 71 KEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG----------LKGDELTARL--- 117
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ + LG++ D VG G S G +++V L
Sbjct: 118 ---------------------EELADRLGMEELLDRRVG-----GFSTGMRQKVAIARAL 151
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQM----------VHILDVTMIVALLQPAPET 407
V VL +DE +TGLD T + +F++Q+ HI+ E
Sbjct: 152 VHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ------------EV 199
Query: 408 YDLFDDIILLSEGQIVYQG 426
L D +++L G++VY+G
Sbjct: 200 ERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 77/283 (27%), Positives = 118/283 (41%), Gaps = 55/283 (19%)
Query: 179 SKKR--SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
KKR + L D+S +K + LLGP GAGK+TL+ +AG D +G+I G
Sbjct: 8 VKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGR 64
Query: 237 EL----NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
L N V R ++ QH MTV + + F G+ R E +E R +
Sbjct: 65 VLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAF-----GLKVRKERPSEAEIRAR-- 117
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
V L + + D +SGGQ++RV
Sbjct: 118 ----------------VEEL--------------LRLVQLEGLADRYPAQLSGGQRQRVA 147
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412
L VL +DE LD+ ++ ++L+++ L VT V + E +L D
Sbjct: 148 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT-TVFVTHDQEEALELAD 206
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
+++L++G+I GP D E ++H P + VA FL EV
Sbjct: 207 RVVVLNQGRIEQVGPPD---EVYDH-----PASRFVARFLGEV 241
|
Length = 345 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 5e-12
Identities = 63/248 (25%), Positives = 97/248 (39%), Gaps = 49/248 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----EL 238
++ VS V+ + LLGP GAGKTT + L L SG+ T GH E
Sbjct: 12 DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREP 68
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
E +R + Q E+T E L R GV AE R
Sbjct: 69 REV--RRRIGIVFQDLSVDDELTGWENLYIHARLYGVPG-----AERRER---------- 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D +L +GL AD +V + SGG ++R+ LV
Sbjct: 112 -------------------IDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLV 147
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
VL++DE + GLD T + ++++++ +T I+ E L D + ++
Sbjct: 148 HRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMT-ILLTTHYMEEAEQLCDRVAIID 206
Query: 419 EGQIVYQG 426
G+I+ +G
Sbjct: 207 HGRIIAEG 214
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 5e-12
Identities = 61/227 (26%), Positives = 100/227 (44%), Gaps = 27/227 (11%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 931
G ++Q L VS G + AL+G +GAGKTTL+ + G R G I I+G
Sbjct: 11 AGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGL 70
Query: 932 PKNQETFARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
P R Y + P +TV E+LL A+ R D + ++ ++EV EL
Sbjct: 71 P----PHERARLGIAYVPEGRRIFPRLTVEENLLLGAYAR----RDKEAQERDLEEVYEL 122
Query: 989 V-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LK + G LS +++ L IA L++ P ++ +DEP+ GL + +
Sbjct: 123 FPRLKERRNQRAGT-----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFE 177
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
++ G + + Q + A D +L+ GR++ +G
Sbjct: 178 AIKELRKEGGMTILLVEQ---NARFALEIADRGYVLEN-GRIVLSGT 220
|
Length = 237 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 7e-12
Identities = 61/257 (23%), Positives = 110/257 (42%), Gaps = 51/257 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
R+L VS ++P + +LGP GAGK+TL+ AL+G+L D SG++T G LN + P
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPP- 70
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE---ID 301
+ H + +L F V ++ R ++G +P+ +
Sbjct: 71 ------EELARHRAVLPQNSSLAFPFTVQEV-------VQMGRIPHRSGREPEEDERIAA 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML---- 357
+ A ++G DY R +SGG+++RV +L
Sbjct: 118 QALAATDLSGLAGR---DY--------------------RTLSGGEQQRVQLARVLAQLW 154
Query: 358 --VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
V + L++DE ++ LD + + +Q+ + ++A+L D I+
Sbjct: 155 PPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR--EGGAVLAVLHDLNLAAQYADRIV 212
Query: 416 LLSEGQIVYQGPRDNVL 432
LL +G+++ G +VL
Sbjct: 213 LLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 8e-12
Identities = 66/279 (23%), Positives = 106/279 (37%), Gaps = 66/279 (23%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
L ++ V+ + DVS ++ L+G G+GK+TL LAG L SG I +
Sbjct: 295 GLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS---SGSIIFD 351
Query: 235 GHELN----EFVPQRTCAYIS-QH-----DLHHGEMTVRETLDFSGRCLGVGTRYELLAE 284
G +L+ E R + Q + MTV + +LAE
Sbjct: 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR---MTVGD----------------ILAE 392
Query: 285 LSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344
R G E +L+++GL D +S
Sbjct: 393 PLRIHGGGS-----------------GAERRARVAELLELVGLP----PEFLDRYPHELS 431
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPA 404
GGQ++RV L +L +DE + LD S Q+ LK + L +T +
Sbjct: 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFI----- 486
Query: 405 PETYDLF------DDIILLSEGQIVYQGPRDNVLEFFEH 437
++DL D + ++ +G+IV +GP + V E +H
Sbjct: 487 --SHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQH 523
|
Length = 539 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 9e-12
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 20/195 (10%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ 935
G+ ++L VS G + A++G SG+GK+TL+ +L G G++ +G ++
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSK 71
Query: 936 ETFARVS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
+ + G+ Q P T E++ + S + K+R E++E
Sbjct: 72 LSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAY---EMLEK 128
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV--- 1045
V L+ + P S LS +R+R+ IA LV PS++ DEPT LD A I+
Sbjct: 129 VGLE---HRINHRP--SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 1046 MRTVRNTVDTGRTVV 1060
M + ++T VV
Sbjct: 184 MLELNRELNTSFLVV 198
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-11
Identities = 44/192 (22%), Positives = 73/192 (38%), Gaps = 46/192 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ +S + +L GP G+GKTTL+ +AG L A+G I G ++++
Sbjct: 17 LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP---AAGTIKLDGGDIDDPDVAE 73
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
C Y+ + +TV E L+F LG + +I A ++
Sbjct: 74 ACHYLGHRNAMKPALTVAENLEFWAAFLG--------------------GEELDIAAALE 113
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
AV +A + L S GQK+RV +LV +
Sbjct: 114 AVGLAP-----LAHLPFGYL------------------SAGQKRRVALARLLVSNRPIWI 150
Query: 366 MDEISTGLDSST 377
+DE + LD++
Sbjct: 151 LDEPTAALDAAA 162
|
Length = 207 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-11
Identities = 51/179 (28%), Positives = 76/179 (42%), Gaps = 25/179 (13%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKI 928
G G+ L++VS G ++G SG+GK+TL +LAG + + G I +
Sbjct: 11 IVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS----SGSILL 66
Query: 929 SGYP----KNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
G P K + F R Q+ S P TV L K + +
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-SEPLRPHGLS----KSQQRI 121
Query: 983 DEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
E+++ V L L+ L G G QR+R+ IA L+ P ++ +DEPTS LD
Sbjct: 122 AELLDQVGLPPSFLDRRPHELSG--G----QRQRIAIARALIPEPKLLILDEPTSALDV 174
|
Length = 252 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 1e-11
Identities = 63/252 (25%), Positives = 111/252 (44%), Gaps = 51/252 (20%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL--NEFVPQ 244
L +VS + R+ LGP GAGK+T M + G L D SG + CG ++ N Q
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQ 74
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R Y+ +H+ + +M VRE L F G+ + L +R ++
Sbjct: 75 RNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQ-----LLKQRVEE------------- 116
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+++++GL +G +S G ++RV + L+ VL
Sbjct: 117 ----------------MIELVGLRPEQHKKIGQ-----LSKGYRQRVGLAQALIHDPKVL 155
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAPETYDLFDDIILLSEGQI 422
+DE +TGLD + +I +K + D T+I++ ++Q E + D +I++++G+I
Sbjct: 156 ILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIMQ---EVEAICDRVIIINKGKI 210
Query: 423 VYQGPRDNVLEF 434
V D +
Sbjct: 211 VADKKLDELSAA 222
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 1e-11
Identities = 62/219 (28%), Positives = 95/219 (43%), Gaps = 29/219 (13%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQE---TF 938
V+ G L+G SG+GKTT + + IE G+I I G +
Sbjct: 19 DVNLTIEEGEFLVLIGPSGSGKTTTL-----KMINRLIEPTSGEILIDGEDISDLDPVEL 73
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R GY Q P++TV E++ L D ++ K DE+++LV L ++
Sbjct: 74 RRKIGYVIQQIGLFPHLTVAENIATVPKL---LGWDKERIKKRADELLDLVGLDP-SEYA 129
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAA-IVMRTVRNTVDT 1055
P LS Q++R+ +A L A+P I+ MDEP LD R ++ ++
Sbjct: 130 DRYP--HELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKE--L 185
Query: 1056 GRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
G+T+V H DI EA D + ++ G V Y P
Sbjct: 186 GKTIVFVTH----DIDEALKLADRIAVMDAGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 1e-11
Identities = 67/240 (27%), Positives = 97/240 (40%), Gaps = 54/240 (22%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQET---FARVSG 943
G L+G SG+GKTT M + IE G+I I G ++ R G
Sbjct: 24 IAKGEFLVLIGPSGSGKTTTM-----KMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78
Query: 944 YCEQNDIHSPYVTVYE------SLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL--KSLN 995
Y Q P++TV E LL W + +K + DE++ LV L
Sbjct: 79 YVIQQIGLFPHMTVEENIALVPKLL--KWPK-------EKIRERADELLALVGLDPAEFA 129
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT------V 1049
D P LS Q++R+ +A L A+P ++ MDEP LD + R
Sbjct: 130 DRY---P--HELSGGQQQRVGVARALAADPPLLLMDEPFGALDP-----ITRDQLQEEFK 179
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP---LGHESHKLIEYF 1103
R + G+T+V H DI EAF D + ++K G V P L ++ + F
Sbjct: 180 RLQQELGKTIVFVTH----DIDEAFRLADRIAIMKNGEIVQVGTPDEILRSPANDFVAEF 235
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 1e-11
Identities = 53/206 (25%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND-IH 951
G + AL+GV+G+GK+TL L G G I I G P Q + Y Q++ +
Sbjct: 33 GSIAALVGVNGSGKSTLFKALMGFVRLA--SGKISILGQPTRQALQKNLVAYVPQSEEVD 90
Query: 952 SPYVTVYESLL------YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
+ + E ++ + WLR + D + V + V++ +G
Sbjct: 91 WSFPVLVEDVVMMGRYGHMGWLRRAKKRD----RQIVTAALARVDMVEFRHRQIG----- 141
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q+KR+ +A + +I +DEP +G+D + A ++ +R D G+T++ + H
Sbjct: 142 ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHN 201
Query: 1066 PSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ E D +++K G V+ +GP
Sbjct: 202 LG-SVTEFCDYTVMVK--GTVLASGP 224
|
Length = 272 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 2e-11
Identities = 60/224 (26%), Positives = 102/224 (45%), Gaps = 37/224 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQ---ET 937
L +VS RPG A++G G+GK+TL+ +L G Y EG + + G Q
Sbjct: 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGL----YQPTEGSVLLDGVDIRQIDPAD 536
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-- 995
R GY Q D Y T+ +++ A + D +E++ EL +
Sbjct: 537 LRRNIGYVPQ-DPRLFYGTLRDNIALGA--PYADD----------EEILRAAELAGVTEF 583
Query: 996 --------DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
D +G G LS QR+ + +A L+ +P I+ +DEPTS +D R+
Sbjct: 584 VRRHPDGLDMQIGERGR-SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKD 642
Query: 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
++ + G+T+V H+ S + + D ++++ GR++ GP
Sbjct: 643 RLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVM-DNGRIVADGP 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 2e-11
Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 57/265 (21%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ + DVS V+P + L+GP GAGKTTL + G SG + + G ++ P
Sbjct: 17 LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPP 73
Query: 244 QRTCAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R I+ Q +TV E + +G R L L R + +
Sbjct: 74 HRIARLGIARTFQITRLFPGLTVLENV-----AVGAHARLGLSGLLGRPRARKEER---- 124
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+A A + +L+ +GL AD G+ +S GQ++R+ L
Sbjct: 125 -----EARERARE--------LLEFVGLGELADRPAGN-----LSYGQQRRLEIARALAT 166
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQ----------MV-HILDVTMIVALLQPAPETY 408
+L +DE + GL+ T ++ + +++ ++ H + + M
Sbjct: 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM------------ 214
Query: 409 DLFDDIILLSEGQIVYQGPRDNVLE 433
L D I++L+ G+++ +G + V
Sbjct: 215 GLADRIVVLNYGEVIAEGTPEEVRN 239
|
Length = 250 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.6 bits (161), Expect = 2e-11
Identities = 59/263 (22%), Positives = 95/263 (36%), Gaps = 65/263 (24%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
++ L+ VS V+ + LLG GAGKTTL+ + G + SG+I + G ++ P
Sbjct: 16 IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPP 72
Query: 244 QRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
AY+ + +TV E L LL R + + D E
Sbjct: 73 HERARLGIAYVPEGRRIFPRLTVEENL--------------LLG-AYARRDKEAQERDLE 117
Query: 300 IDAFMKAVAVAGQETSLVTDY--VLKILGLDICADTMVGDEMRRG----ISGGQKKRVTT 353
V + LK E R +SGG+++ +
Sbjct: 118 E----------------VYELFPRLK--------------ERRNQRAGTLSGGEQQMLAI 147
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALL--QPAPETYDL 410
L+ +L +DE S GL I + + + + L + LL Q A ++
Sbjct: 148 ARALMSRPKLLLLDEPSEGLAPK----IVEEIFEAIKELRKEGGMTILLVEQNARFALEI 203
Query: 411 FDDIILLSEGQIVYQGPRDNVLE 433
D +L G+IV G +L
Sbjct: 204 ADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 2e-11
Identities = 58/213 (27%), Positives = 100/213 (46%), Gaps = 29/213 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFA 939
L +S + G A++G SG+GK+TL ++ G G +++ G Q ETF
Sbjct: 334 LRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWP--PTSGSVRLDGADLKQWDRETFG 391
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ GY Q D+ TV E++ R + D +K ++E +L +++ ++
Sbjct: 392 KHIGYLPQ-DVELFPGTVAENIA-----RFGENADPEK-------IIEAAKLAGVHELIL 438
Query: 1000 GLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
LP G + LS QR+R+ +A L +P ++ +DEP S LD + ++
Sbjct: 439 RLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK 498
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G TVV H+PS + D++L+L+ G
Sbjct: 499 ALKARGITVVVITHRPS--LLGCVDKILVLQDG 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 68/274 (24%), Positives = 109/274 (39%), Gaps = 49/274 (17%)
Query: 168 ESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA 227
E + + +L + + LKDV+ + M ++GP GAGK+TL+ +L G +
Sbjct: 1 EMMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT--- 57
Query: 228 SGKITYCGHELNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYEL 281
SG+I + G ++ + +R I Q ++V E + GR T L
Sbjct: 58 SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENV-LLGRLGYTSTWRSL 116
Query: 282 LAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341
S+ +K + DA E + D + A T+
Sbjct: 117 FGLFSKEDKAQAL------DAL---------ERVGILDKAYQR------ASTL------- 148
Query: 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
SGGQ++RV LV ++ DE LD + ++ LK + +T+IV L
Sbjct: 149 --SGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLH 206
Query: 402 QPAPETYDL----FDDIILLSEGQIVYQGPRDNV 431
Q DL D II L G+IV+ GP +
Sbjct: 207 Q-----VDLAKKYADRIIGLKAGRIVFDGPASEL 235
|
Length = 258 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 12/186 (6%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L VS G L G SGAGK+TL+ ++ G R T G I +S + F
Sbjct: 18 LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFL 77
Query: 940 RVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
R G Q+ P TVYE++ + + ++R V E+++L L
Sbjct: 78 RRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR------VSEVLDLVGLKHKA 131
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRT 1058
LP S LS +++R+ IA +V P+++ DEPT LD + +MR G T
Sbjct: 132 RALP--SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTT 189
Query: 1059 VVCTIH 1064
V+ H
Sbjct: 190 VLMATH 195
|
Length = 223 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (160), Expect = 3e-11
Identities = 64/233 (27%), Positives = 100/233 (42%), Gaps = 46/233 (19%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQ-- 935
LL VS RPG + A++G +GAGK+TL+ L+ G + G+++++G P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALS-----GELSPDSGEVRLNGRPLADWS 70
Query: 936 -ETFARVSGYCEQNDIHS----PYVTVYE--SLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
AR Q HS P+ TV E ++ + ++ D V +
Sbjct: 71 PAELARRRAVLPQ---HSSLSFPF-TVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQ 121
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------ANPSIIFMDEPTSGLDARAA 1042
V+L L P +SG EQ +R+ +A L P + +DEPTS LD
Sbjct: 122 VDLAHLAGRD--YPQLSG--GEQ-QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQ 176
Query: 1043 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
V+R R + G V+ +H D+ A D ++LL GR++ G
Sbjct: 177 HHVLRLARQLAHERGLAVIVVLH----DLNLAARYADRIVLLH-QGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 898 LMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQETFARVSGYCEQNDIHSP 953
L+G SG GKTT + ++AG T G YI G ++ P A V QN P
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYI-GGRDVTDLPPKDRDIAMVF----QNYALYP 85
Query: 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013
++TVY+++ + LR + +R V EV EL++++ L D LS QR+
Sbjct: 86 HMTVYDNIAFGLKLRKVPKDEIDER---VREVAELLQIEHLLDRKP-----KQLSGGQRQ 137
Query: 1014 RLTIAVELVANPSIIFMDEPTSGLDAR 1040
R+ + +V P + MDEP S LDA+
Sbjct: 138 RVALGRAIVREPKVFLMDEPLSNLDAK 164
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 4e-11
Identities = 63/212 (29%), Positives = 93/212 (43%), Gaps = 20/212 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +S R G + ALMG +GAGK+TL+ +L+G G I I G FA +
Sbjct: 20 LDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD--AGSILIDGQEMR---FASTT 74
Query: 943 GYCEQND--IH-----SPYVTVYESLLYSAWL-RLSSDVDTKKRKMFVDEVMELVELKSL 994
I+ P +TV E+L +L +L R++ E E +L+ L
Sbjct: 75 AALAAGVAIIYQELHLVPEMTVAENL----YLGQLPHKGGIVNRRLLNYEARE--QLEHL 128
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ + LS QR+ + IA L N +I DEPTS L AR + R +R
Sbjct: 129 GVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA 188
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
GR ++ H+ +IF D + + K G V
Sbjct: 189 EGRVILYVSHRME-EIFALCDAITVFKDGRYV 219
|
Length = 501 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 4e-11
Identities = 61/211 (28%), Positives = 100/211 (47%), Gaps = 26/211 (12%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR--VSGYCEQ 947
G + A++G SGAGK+TL++++AG +T G+I I+G A VS ++
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFETPA--SGEILINGVDHTASPPAERPVSMLFQE 79
Query: 948 NDIHSPYVTVYES--LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
N++ + ++TV ++ L S L+L++ +K V+ V L LPG
Sbjct: 80 NNLFA-HLTVAQNIGLGLSPGLKLNA-EQREK----VEAAAAQVGLAGFLKR---LPGE- 129
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRTVVC 1061
LS QR+R+ +A LV I+ +DEP S LD RA M + + + + T++
Sbjct: 130 -LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAE---MLALVSQLCDERKMTLLM 185
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
H P D D ++ L GR+ G
Sbjct: 186 VTHHPE-DAARIADRVVFLDN-GRIAAQGST 214
|
Length = 231 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-11
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 18/133 (13%)
Query: 907 TTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS----GYCEQNDIHSPYVTVYESLL 962
+TL+ ++ G G I + G + ++ G Q+ P +TV E+L
Sbjct: 1 STLLKLITGLLQ--PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLF 58
Query: 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022
+ K+ +E +E V L D V LS Q++R+ IA L+
Sbjct: 59 FGL--------RDKEADARAEEALERVGLPDFLDRE----PVGTLSGGQKQRVAIARALL 106
Query: 1023 ANPSIIFMDEPTS 1035
P ++ +DEPT+
Sbjct: 107 KKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 5e-11
Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 23/233 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 926
G + L VS G + ++G SGAGK+TL+ ++ R T G +++G
Sbjct: 10 TFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQ- 68
Query: 927 KISGYPKNQETFARVS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
++ + + R G Q N + S TV+E++ + L L+ V + K V
Sbjct: 69 DLTALSEAELRQLRQKIGMIFQHFNLLSSR--TVFENVAFP--LELAG-VPKAEIKQRVA 123
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAA 1042
E++ELV L D P + LS Q++R+ IA L NP I+ DE TS LD
Sbjct: 124 ELLELVGLSDKADRY---P--AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQ 178
Query: 1043 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIYAGPLGH 1094
+I+ + G T+V H+ +++ + D + +L + GR++ G +
Sbjct: 179 SILELLKDINRELGLTIVLITHE--MEVVKRICDRVAVLDQ-GRLVEEGTVSE 228
|
Length = 339 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-11
Identities = 59/280 (21%), Positives = 113/280 (40%), Gaps = 30/280 (10%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK---- 927
R+ + VS PG + ++G SG+GK+TL L G + G G++
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 928 -ISGYPKNQETFARVS--GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
+ G + + R Q+ + S P +T+ + + + L +++
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKR--A 133
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
E++E V L + P LS R+R+ IA+ L P ++ DEPT+ LD
Sbjct: 134 VELLEQVGL-PDPERRDRYPHQ--LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQ 190
Query: 1043 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP----LGHESH 1097
A ++ +++ + G V+ H + + E D ++++ + G ++ GP L + H
Sbjct: 191 AQILDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYK-GEIVETGPTEEILSNPQH 248
Query: 1098 ----KLIEYFE---AVPGVPKIKEAYNPATWMLEVSNISV 1130
L+ + + A +L V N+S
Sbjct: 249 PYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSK 288
|
Length = 539 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 8e-11
Identities = 63/276 (22%), Positives = 107/276 (38%), Gaps = 59/276 (21%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGH 236
+ V ++DVS V+P + ++G G+GK+TL LAL G L + SG++ G
Sbjct: 16 ATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75
Query: 237 ELNEFVPQ-------RTCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+L + + A I Q + MT+ + + + R G G+R E
Sbjct: 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVE 135
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
+Q G+ D + + SGG
Sbjct: 136 LLEQVGLPDPERRDRYPHQL------------------------------------SGGM 159
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
++RV L +L DE +T LD +T QI LK + L + ++ T
Sbjct: 160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFI-------T 212
Query: 408 YDL------FDDIILLSEGQIVYQGPRDNVLEFFEH 437
+DL D ++++ +G+IV GP + +L +H
Sbjct: 213 HDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQH 248
|
Length = 539 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 8e-11
Identities = 61/263 (23%), Positives = 93/263 (35%), Gaps = 67/263 (25%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+IL VS V + LLG GAGKTTL+ + G L SG I + G ++ P
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPP 69
Query: 244 QRTC----AYISQHDLHHGEMTVRETLDFSGRCLGVGTR-------YELLAELSRREKQA 292
Y+ + E+TV E L R YEL L R KQ
Sbjct: 70 HERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQL 129
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
A T+ SGG+++ +
Sbjct: 130 --------------------------------------AGTL---------SGGEQQMLA 142
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDL 410
L+ +L +DE S GL +I + ++++ VT+ LL Q A ++
Sbjct: 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTI---LLVEQNARFALEI 198
Query: 411 FDDIILLSEGQIVYQGPRDNVLE 433
D +L G++V +G +L
Sbjct: 199 ADRAYVLERGRVVLEGTAAELLA 221
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 8e-11
Identities = 69/207 (33%), Positives = 98/207 (47%), Gaps = 38/207 (18%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTL------MDVLAGRKTGGYIEGDIKISG---YPK 933
L+SVS F P +TAL+G SG+GK+TL M+ L T I G I +G Y
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT---ITGSIVYNGHNIYSP 77
Query: 934 NQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-- 989
+T + G Q P ++YE+++Y LRL D K +DE +E
Sbjct: 78 RTDTVDLRKEIGMVFQQPNPFPM-SIYENVVYG--LRLKGIKD----KQVLDEAVEKSLK 130
Query: 990 ------ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
E+K L+DS +GL G Q++R+ IA L +P II +DEPTS LD +A
Sbjct: 131 GASIWDEVKDRLHDSALGLSG------GQQQRVCIARVLATSPKIILLDEPTSALDPISA 184
Query: 1043 AIVMRTVRNTVD--TGRTVVCTIHQPS 1067
+ T+ D T V ++ Q S
Sbjct: 185 GKIEETLLGLKDDYTMLLVTRSMQQAS 211
|
Length = 252 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 9e-11
Identities = 60/257 (23%), Positives = 109/257 (42%), Gaps = 55/257 (21%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
RIL D+S + ++T L+GP G GK+TL+ A +L SG + ++ +
Sbjct: 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQ--SGTVFLGDKPISMLSSR 72
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R A + QH L +TVRE + + GR L LS +
Sbjct: 73 QLARRLALLPQHHLTPEGITVRELVAY-GR----SPWLSLWGRLSAEDNA---------- 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
V A ++T ++ AD + D +SGGQ++R +L
Sbjct: 118 ----RVNQAMEQT-----------RINHLADRRLTD-----LSGGQRQRAFLAMVLAQDT 157
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDDII 415
V+ +DE +T LD + ++ + ++++ + T++ L +DL D ++
Sbjct: 158 PVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVL-------HDLNQASRYCDHLV 209
Query: 416 LLSEGQIVYQGPRDNVL 432
+L+ G ++ QG + V+
Sbjct: 210 VLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 9e-11
Identities = 66/276 (23%), Positives = 105/276 (38%), Gaps = 90/276 (32%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVP 243
+L DVS ++P + +LGP GAGK+TL+ AL+G +L SG++ G L ++ P
Sbjct: 16 TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSG----ELSPDSGEVRLNGRPLADWSP 71
Query: 244 Q---RTCAYISQHDLHHGEMTVRETLDFS---------GRCLGVGTRYELLAELSRREKQ 291
R A + QH +L F GR A +
Sbjct: 72 AELARRRAVLPQH----------SSLSFPFTVEEVVAMGR-----------APHGLSRAE 110
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
D + A + V +A DY +SGG+++RV
Sbjct: 111 D----DALVAAALAQVDLAHLAGR---DY--------------------PQLSGGEQQRV 143
Query: 352 TTGEMLV------GTANVLYMDEISTGLDSS---TTFQICKFLKQMVHILDVTMIVALLQ 402
+L G L +DE ++ LD + ++ +Q+ H + +IV L
Sbjct: 144 QLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRL---ARQLAHERGLAVIVVL-- 198
Query: 403 PAPETYDL------FDDIILLSEGQIVYQGPRDNVL 432
+DL D I+LL +G++V G VL
Sbjct: 199 -----HDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 31/89 (34%), Positives = 53/89 (59%), Gaps = 6/89 (6%)
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV--TMIV 398
RG+S Q+KR+T G L ++L++DE ++GLDS + I +FLK++ D ++
Sbjct: 107 RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA---DSGQAILC 163
Query: 399 ALLQPAPETYDLFDDIILLSE-GQIVYQG 426
+ QP+ ++ FD ++LL G+ VY G
Sbjct: 164 TIHQPSASIFEKFDRLLLLKRGGKTVYFG 192
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 66/259 (25%), Positives = 102/259 (39%), Gaps = 55/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELN 239
I+ V P +T LLGP G+GK+TL+ LAG L D +G + G H L+
Sbjct: 13 GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLS 69
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R A + Q +TVR+ + L + R AG D
Sbjct: 70 RRARARRVALVEQDSDTAVPLTVRDVV--------------ALGRIPHRSLWAG---DSP 112
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
DA + A+A E S + D + L SGG+++RV L
Sbjct: 113 HDAAVVDRALARTELSHLADRDMSTL------------------SGGERQRVHVARALAQ 154
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDD 413
+L +DE + LD + ++++ VT++ AL +DL D
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAAT-GVTVVAAL-------HDLNLAASYCDH 206
Query: 414 IILLSEGQIVYQGPRDNVL 432
+++L G++V GP VL
Sbjct: 207 VVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 1e-10
Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 53/186 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 930
L ++ +TAL+G SG GK+TL+ D++ G + +EG++ + G
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGAR----VEGEVLLDGKNI 76
Query: 931 YPKNQETFA---RVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
Y + RV G Q P ++Y+++ Y LRL D E
Sbjct: 77 YDPKVDVVELRRRV-GMVFQ----KPNPFPMSIYDNVAYG--LRLHGIKD--------KE 121
Query: 985 VMELVE--LKS----------LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
+ E+VE LK L+ S +GL G G Q++RL IA L P ++ MDE
Sbjct: 122 LDEIVESSLKKAALWDEVKDRLHKSALGLSG--G----QQQRLCIARALAVKPEVLLMDE 175
Query: 1033 PTSGLD 1038
PTS LD
Sbjct: 176 PTSALD 181
|
Length = 253 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-10
Identities = 62/253 (24%), Positives = 109/253 (43%), Gaps = 69/253 (27%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
++ + LKD++ V + ++GP G+GK++L+ AL G+L K SG ++ G
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL---SGSVSVPG-- 66
Query: 238 LNEFVPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ AY+SQ + +G T+RE + F G ++ R ++
Sbjct: 67 --------SIAYVSQEPWIQNG--TIRENILF-------GKPFD-----EERYEKV---- 100
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTT 353
I A +L D L+IL D T +G+ +GI SGGQK+R++
Sbjct: 101 ---IKA-----------CALEPD--LEILPDGD---LTEIGE---KGINLSGGQKQRISL 138
Query: 354 GEMLVGTANVLYMDEISTGLDSSTT---FQ--ICKFLKQMVHILDVTMIVALLQPAPETY 408
+ A++ +D+ + +D+ F+ I L + VT + LL A
Sbjct: 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHA---- 194
Query: 409 DLFDDIILLSEGQ 421
D I++L G+
Sbjct: 195 ---DQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 1e-10
Identities = 66/213 (30%), Positives = 104/213 (48%), Gaps = 27/213 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L ++ G L ++G SG GKTTL++++AG Y G I + G P R
Sbjct: 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEGPGAER-- 72
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
G QN+ P+ V +++ + L+L+ V+ +R ++++ V L+ +
Sbjct: 73 GVVFQNEGLLPWRNVQDNVAFG--LQLAG-VEKMQRLEIAHQMLKKVGLEGAEKRYIW-- 127
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRTVRNTV--DTGRT 1058
LS QR+R+ IA L ANP ++ +DEP LDA R M+T+ + +TG+
Sbjct: 128 ---QLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQ---MQTLLLKLWQETGKQ 181
Query: 1059 VVCTIHQPSIDIFEAF---DELLLLKRG-GRVI 1087
V+ H DI EA EL+LL G GRV+
Sbjct: 182 VLLITH----DIEEAVFMATELVLLSPGPGRVV 210
|
Length = 255 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 1e-10
Identities = 56/216 (25%), Positives = 95/216 (43%), Gaps = 15/216 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
+L ++ F +T L+G +G GK+TL L+G R G + K Y K
Sbjct: 15 PVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLA 74
Query: 939 AR--VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R V+ + + Y + + +S + + +R VDE + LV+ +
Sbjct: 75 LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR---VDEALTLVDAQHFRH 131
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ LS Q+KR+ IA LV + +DEPT+GLD ++ +R V G
Sbjct: 132 Q-----PIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQG 186
Query: 1057 RTVVCTIHQPSID-IFEAFDELLLLKRGGRVIYAGP 1091
V+ + H ID I+E D + +L++G + + P
Sbjct: 187 NHVIISSH--DIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 63/258 (24%), Positives = 103/258 (39%), Gaps = 57/258 (22%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG----------KLGKDLRASGKITY 233
+ LK+++ + P ++GP GAGK+TL+ + G D+
Sbjct: 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLR---- 70
Query: 234 CGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
G +L + +R I QH +TV E + GR T LL S +K+
Sbjct: 71 -GKKLRKL--RRRIGMIFQHYNLIERLTVLENV-LHGRLGYKPTWRSLLGRFSEEDKE-- 124
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+A+ L+ +GL A D++ SGGQ++RV
Sbjct: 125 -----------RAL------------SALERVGLADKAYQRA-DQL----SGGQQQRVAI 156
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL--- 410
L +++ DE LD T+ Q+ +LK++ +T+I+ L Q DL
Sbjct: 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ-----VDLAKK 211
Query: 411 -FDDIILLSEGQIVYQGP 427
D I+ L G+IV+ G
Sbjct: 212 YADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 2e-10
Identities = 59/201 (29%), Positives = 91/201 (45%), Gaps = 26/201 (12%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV--LAGRKTGGYIE-GDIKI-SGYPKNQE 936
+LH + +PG + A++G SG+GKTTL+ L + G I GDI I + +Q+
Sbjct: 17 TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQ 76
Query: 937 -----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ G+ QN P+ TV E+++ + V + ++ EL+
Sbjct: 77 KGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI-----VKGEPKEEATARARELL-- 129
Query: 992 KSLNDSMVGLPGVSG-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
+ VGL G LS Q++R+ IA L P +I DEPTS LD V+
Sbjct: 130 -----AKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVL 184
Query: 1047 RTVRNTVDTGRTVVCTIHQPS 1067
T+R RT+V H+ S
Sbjct: 185 NTIRQLAQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 34/223 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ---ET 937
L +S + G ++G SG+GK+TL +L G T G + D G Q E
Sbjct: 352 LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLD----GADLRQWDREQ 407
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY Q D+ T+ E++ R + D +K V+E L +++
Sbjct: 408 LGRHIGYLPQ-DVELFDGTIAENIA-----RFGEEADPEK-------VIEAARLAGVHEL 454
Query: 998 MVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
++ LP G + LS QR+R+ +A L +P ++ +DEP S LD+ A +
Sbjct: 455 ILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAA 514
Query: 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ G TVV H+PS + D++L+L+ GR+ GP
Sbjct: 515 ILAAKARGGTVVVIAHRPS--ALASVDKILVLQ-DGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 17/219 (7%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
D L ++ + G +TA++G +GAGK+TL L G + + G I D K Y +
Sbjct: 17 DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKG 76
Query: 936 ETFARVS-GYCEQNDIHSPY-VTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELK 992
R S G Q+ + + +VY+ + + A L+L D + +KR VD ++ ++
Sbjct: 77 LMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPED-EVRKR---VDNALKRTGIE 132
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
L D LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ +
Sbjct: 133 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM 187
Query: 1053 V-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G T++ H IDI + + + + + GRVI G
Sbjct: 188 QKELGLTIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 2e-10
Identities = 61/212 (28%), Positives = 94/212 (44%), Gaps = 35/212 (16%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYPKNQETFARVSGYCEQ- 947
G L L+G +GAGKTTL+ R G I +G +K++G + R GY Q
Sbjct: 5 KGELLGLLGPNGAGKTTLL-----RAILGLIPPAKGTVKVAGASPGKGW--RHIGYVPQR 57
Query: 948 NDIHSPY-VTVYESLLYS-----AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
++ + ++V +++ WLR D V + + V L L D VG
Sbjct: 58 HEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA----VRDALRRVGLTELADRPVG- 112
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
LS QR+R+ +A L PS++ +DEP +GLD ++ G ++
Sbjct: 113 ----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILM 168
Query: 1062 TIHQPSIDIFEAF---DELLLLKRGGRVIYAG 1090
T H D+ +A D ++LL GRVI G
Sbjct: 169 TTH----DLAQAMATCDRVVLLN--GRVIADG 194
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 2e-10
Identities = 66/216 (30%), Positives = 100/216 (46%), Gaps = 31/216 (14%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSG---YC 945
+PG AL+G SG+GK+T+ ++AG + G +I G P+ + ++
Sbjct: 503 QPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG----EILFDGIPREEIPREVLANSVAMV 558
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSD---VDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
+Q DI TV ++L + W D V K D + D+ +
Sbjct: 559 DQ-DIFLFEGTVRDNL--TLWDPTIPDADLVRACKDAAIHDVITSR---PGGYDAEL-AE 611
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
G + LS QR+RL IA LV NPSI+ +DE TS LD I+ +R R C
Sbjct: 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR-----RGCTCI 666
Query: 1063 I--HQPSIDIFEAFDELLLLKRGGRVIYAGPLGHES 1096
I H+ S I + DE+++L+R G+V+ G HE
Sbjct: 667 IVAHRLST-IRDC-DEIIVLER-GKVVQRGT--HEE 697
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-10
Identities = 59/220 (26%), Positives = 101/220 (45%), Gaps = 32/220 (14%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ- 935
D ++L +++ +PG ++G SG+GK+TL +L T + G + + G
Sbjct: 467 PDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH--GQVLVDGVDLAIA 524
Query: 936 --ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
R G V + E++L+S +R ++ + V+ +L
Sbjct: 525 DPAWLRRQMG-----------VVLQENVLFSRSIR--DNIALCNPGAPFEHVIHAAKLAG 571
Query: 994 LNDSMVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+D + LP G LS QR+R+ IA LV NP I+ DE TS LD + A
Sbjct: 572 AHDFISELPQGYNTEVGEKGA-NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEA 630
Query: 1044 IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
++MR +R + GRTV+ H+ + A D +++L++G
Sbjct: 631 LIMRNMR-EICRGRTVIIIAHR--LSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 2e-10
Identities = 61/275 (22%), Positives = 108/275 (39%), Gaps = 62/275 (22%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSG 943
VS + G + AL+G +GAGK+TLM +L G + G+I++ G
Sbjct: 23 VSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD----SGEIRVDGKEVR--------- 69
Query: 944 YCEQNDIHSPY-------------------VTVYESLLYSAWLRLSSDVDTKK-RKMFVD 983
I SP +TV E+++ +D ++ R +
Sbjct: 70 ------IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR-IK 122
Query: 984 EVMEL----VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
E+ E V+ + V+ LS +++R+ I L ++ +DEPT+ L
Sbjct: 123 ELSERYGLPVDPDAK---------VADLSVGEQQRVEILKALYRGARLLILDEPTAVLTP 173
Query: 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG---GRVIYAGPLGHES 1096
+ A + +R G+T++ H+ ++ D + +L+RG G V E
Sbjct: 174 QEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVDPVAETTEEE 232
Query: 1097 HKLIE-YFEAVPGVPKIKEAYNPATWMLEVSNISV 1130
L E + +K P +LEV ++SV
Sbjct: 233 --LAELMVGREVVLRVVKPPSTPGEVVLEVEDLSV 265
|
Length = 501 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 46/164 (28%), Positives = 78/164 (47%), Gaps = 29/164 (17%)
Query: 899 MGVSGAGKTTLMDVLAGR--KTGGYIE-GDIKISGYPKNQ--ETFARV-----SGYCEQN 948
+G +GAGK+TL++ +AG T G I + ++ + ARV +G
Sbjct: 38 IGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTA--- 94
Query: 949 DIHSPYVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLP 1002
P +T+ E+L A R LSS ++ ++R F + + L L++ +GL
Sbjct: 95 ----PELTIEENLAL-AESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGL- 148
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
LS QR+ L++ + + P I+ +DE T+ LD + A VM
Sbjct: 149 ----LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
|
Length = 263 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 52/171 (30%), Positives = 88/171 (51%), Gaps = 30/171 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L+ +S PG L ++G +GAGKTT+MDV+ G R G + G ++G P++Q A
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQ--IA 75
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAW--LRLSSDVD-----------TKKRKMFVDEVM 986
R +G + P TV+E+L + + L L+ D + + K ++EV+
Sbjct: 76 R-AGIGRK--FQKP--TVFENL--TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVL 128
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
E + L D + GL LS Q++ L I + L+ +P ++ +DEP +G+
Sbjct: 129 ETIGLADEADRLAGL-----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 3e-10
Identities = 63/278 (22%), Positives = 109/278 (39%), Gaps = 68/278 (24%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCG 235
P+ V+ + VS +K + ++G G+GK+ L A+ G L K G+I + G
Sbjct: 12 PTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71
Query: 236 HELNEFVPQRTC-------AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE-LSR 287
+L + A I Q MT +L+ +G + +AE L
Sbjct: 72 KDLLSLSEKELRKIRGKEIAMIFQ-----DPMT---SLNPVMT---IG---DQIAEVLRL 117
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG----- 342
K K +A +A+ + L+++G+ D RR
Sbjct: 118 HGKGLSKK-----EAKERAIEL------------LELVGIP--------DPERRLKSYPH 152
Query: 343 -ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
+SGG ++RV L +L DE +T LD + QI LK++ +I+
Sbjct: 153 ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILI-- 210
Query: 402 QPAPETYDL------FDDIILLSEGQIVYQGPRDNVLE 433
T+DL D + ++ G+IV +GP + + +
Sbjct: 211 -----THDLGVVAEIADRVAVMYAGRIVEEGPVEEIFK 243
|
Length = 316 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 3e-10
Identities = 56/184 (30%), Positives = 79/184 (42%), Gaps = 30/184 (16%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
D +L VS PG A++G SG+GK+TL+ +L G +T G + G
Sbjct: 462 RPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE--SGSVFYDGQDLAG 519
Query: 933 KNQETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ + R G QN + S +++E++ A L L DE E +
Sbjct: 520 LDVQAVRRQLGVVLQNGRLMSG--SIFENIAGGAPLTL-------------DEAWEAARM 564
Query: 992 KSLNDSMVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
L + + +P G LS QR+RL IA LV P I+ DE TS LD R
Sbjct: 565 AGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624
Query: 1043 AIVM 1046
AIV
Sbjct: 625 AIVS 628
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 4e-10
Identities = 66/256 (25%), Positives = 108/256 (42%), Gaps = 71/256 (27%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHEL---- 238
++L D++ + P + +L GP G+GKTTL L L G LR+ G + G EL
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTL-LTLIGG----LRSVQEGSLKVLGQELYGAS 73
Query: 239 -NEFVP-QRTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
E V +R YI Q H+L G +T R+ + + EL LS +E +
Sbjct: 74 EKELVQLRRNIGYIFQAHNL-LGFLTARQNVQMA---------LELQPNLSYQEARE--- 120
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR---RGISGGQKKRVT 352
+A A +L+ +GL GD + +SGGQK+RV
Sbjct: 121 ---------RARA------------MLEAVGL--------GDHLDYYPHNLSGGQKQRVA 151
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVH-----ILDVTMIVALLQPAPET 407
LV ++ DE + LDS + + + ++++ IL VT
Sbjct: 152 IARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTH-------DNRI 204
Query: 408 YDLFDDIILLSEGQIV 423
D+ D I+ + +G+++
Sbjct: 205 LDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 28/166 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIKISGYP--KNQET 937
L VS + G + +G +GAGK+T M ++ G Y+ G +++ G +N +
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITG-----YLPPDSGSVQVCGEDVLQNPKE 72
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
R GY + H+P +Y + +L+ + + K ++ V E++EL
Sbjct: 73 VQRNIGYLPE---HNP---LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIEL------ 120
Query: 998 MVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
VGL + LS R+R+ +A L+ +P ++ +DEPT+GLD
Sbjct: 121 -VGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 4e-10
Identities = 62/219 (28%), Positives = 99/219 (45%), Gaps = 15/219 (6%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIEGD-IKISGY 931
D +L +S G AL+G SG+GK+TL++++ R G I D + Y
Sbjct: 11 PGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIP-RFYDVDSGRILIDGHDVRDY 69
Query: 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
R G Q D+ TV E++ Y +V+ R E + EL
Sbjct: 70 TLAS--LRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIM--EL 124
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
D+++G GV LS QR+R+ IA L+ +P I+ +DE TS LD + +V +
Sbjct: 125 PEGYDTVIGERGVK-LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALER 183
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ RT H+ S I A D +++L+ G+++ G
Sbjct: 184 LMK-NRTTFVIAHRLST-IENA-DRIVVLED-GKIVERG 218
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 5e-10
Identities = 52/202 (25%), Positives = 80/202 (39%), Gaps = 22/202 (10%)
Query: 869 EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDI 926
E D L +S G + G +G+GKTTL+ +LAG G +
Sbjct: 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPL----AGRV 57
Query: 927 KISGYPKNQE--TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
++G P + + + AR Y ++V E+L + W SD V+E
Sbjct: 58 LLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRF--WHADHSDEQ-------VEE 108
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ V L D V LS Q++R+ +A L++ + +DEPT+ LD A
Sbjct: 109 ALARVGLNGFEDRPVA-----QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVAR 163
Query: 1045 VMRTVRNTVDTGRTVVCTIHQP 1066
+ G VV T HQ
Sbjct: 164 FAEAMAGHCARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 5e-10
Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 17/224 (7%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 932
R +L +VS G L+G SG GK+TL +L G + +G + G
Sbjct: 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA--QGTVSFRGQDLYQLDR 80
Query: 933 KNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
K + F R Q+ + P +TV + + LR + +D ++K + E++++V
Sbjct: 81 KQRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVG 138
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L+S + LP LS Q +R+ IA L P +I +DE S LD A+++ +R
Sbjct: 139 LRS--EDADKLP--RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLR 194
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094
T I + + ++F + + + G+++ +
Sbjct: 195 KLQQAFGTAYLFITH-DLRLVQSFCQRVAVMDKGQIVEECDVAQ 237
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 59/215 (27%), Positives = 98/215 (45%), Gaps = 37/215 (17%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY-----------PKNQETFAR 940
G+ TAL G SG+GKT+L++++AG EG I+++G P + R
Sbjct: 24 RGI-TALFGPSGSGKTSLINMIAGLTRPD--EGRIELNGRVLVDAEKGIFLPPEK----R 76
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
GY Q+ P+ TV +L Y W + + D +LV L + +
Sbjct: 77 RIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFD------------QLVALLGIEHLLDR 124
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTVDTGRTV 1059
PG LS +++R+ I L+ P ++ MDEP + LD R I+ R + +
Sbjct: 125 YPGT--LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPI 182
Query: 1060 VCTIHQPSID-IFEAFDELLLLKRGGRVIYAGPLG 1093
+ H S+D + D +++L+ G+V +GPL
Sbjct: 183 LYVSH--SLDEVLRLADRVVVLEN-GKVKASGPLE 214
|
Length = 352 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 57/172 (33%), Positives = 81/172 (47%), Gaps = 27/172 (15%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI-EGDIKISGYPKN 934
L +S + G L+G SG GKTTL+ ++AG R+T G I +G I+ P
Sbjct: 15 GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKS 993
+ + G Q+ P +TV +++ Y K R M EV E V EL
Sbjct: 75 KRDY----GIVFQSYALFPNLTVADNIAYG----------LKNRGMGRAEVAERVAELLD 120
Query: 994 LNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
L VGLPG LS Q++R+ +A L +P ++ +DEP S LDAR
Sbjct: 121 L----VGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR 168
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (148), Expect = 5e-10
Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 884 HSVSGV---FRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYP 932
+V V + G + AL+G SG GKTT + D+ G + G I D + I G
Sbjct: 18 QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPR 77
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ R G Q P ++V+++++ A L+L+ + R ++ +
Sbjct: 78 VDPVAMRRRVGMVFQKPNPFPTMSVFDNVV--AGLKLAG---IRDRDHLMEVAERSLRGA 132
Query: 993 SLNDSM---VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+L D + + P +GLS Q++RL IA L P I+ MDEPTS LD + A
Sbjct: 133 ALWDEVKDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTA 185
|
Length = 252 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-10
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 51/257 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
IL V V + +LG G+GK+TL+ + G L D G+I G ++ + +
Sbjct: 22 VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEE 78
Query: 245 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ + Q +TV E + F L E ++ P+
Sbjct: 79 ELYEIRKRMGVLFQQGALFSSLTVFENVAF------------PLREHTK-------LPES 119
Query: 299 EID--AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
I MK L+++GL D +SGG +KRV
Sbjct: 120 LIRELVLMK----------------LELVGLR----GAAADLYPSELSGGMRKRVALARA 159
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
+ +L++DE ++GLD + I + ++++ L +T+I+ + D + +
Sbjct: 160 IALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHD-LDSLLTIADRVAV 218
Query: 417 LSEGQIVYQGPRDNVLE 433
L++G+++ +G + +L
Sbjct: 219 LADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 6e-10
Identities = 56/250 (22%), Positives = 106/250 (42%), Gaps = 55/250 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
+ ++S V P + LLGP GAGKTT + G L G+IT+ G L++ + R
Sbjct: 18 VDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPT---EGEITWNGGPLSQEIKNRI 74
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
Y+ + + +MTV + L + LAEL K K ++ A+++
Sbjct: 75 -GYLPEERGLYPKMTVEDQLKY-------------LAELKGMPKAEIQK---KLQAWLER 117
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+ + G++T + + +S G ++++ ++ +L +
Sbjct: 118 LEIVGKKTKKIKE-----------------------LSKGNQQKIQFISAVIHEPELLIL 154
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILD---VTMIVA--LLQPAPETYDLFDDIILLSEGQ 421
DE +GLD + LK + L T+I + ++ E L D +++L +GQ
Sbjct: 155 DEPFSGLDPVNV----ELLKDAIFELKEEGATIIFSSHRMEHVEE---LCDRLLMLKKGQ 207
Query: 422 IVYQGPRDNV 431
V G +++
Sbjct: 208 TVLYGTVEDI 217
|
Length = 300 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 7e-10
Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 57/270 (21%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISG---YPKN 934
+ + VS + G + ++G SG+GK+ L + G + + G+I G +
Sbjct: 19 KAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLS 78
Query: 935 QETFARVSG----YCEQNDIHS--PYVTV----YESLLYSAWLRLSSDVDTKKRKMFVDE 984
++ ++ G Q+ + S P +T+ E L +K +
Sbjct: 79 EKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG--------LSKKEAKER 130
Query: 985 VMELVELKSLNDSMVGLPGVSG--------LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
+EL+E +VG+P LS R+R+ IA+ L NP ++ DEPT+
Sbjct: 131 AIELLE-------LVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTA 183
Query: 1037 LDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP---- 1091
LD A ++ ++ + G ++ H + + E D + ++ GR++ GP
Sbjct: 184 LDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRVAVMY-AGRIVEEGPVEEI 241
Query: 1092 LGHESH-----------KLIEYFEAVPGVP 1110
+ H +L E +PG P
Sbjct: 242 FKNPKHPYTRGLLNSLPRLGERLPPIPGSP 271
|
Length = 316 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 7e-10
Identities = 46/144 (31%), Positives = 69/144 (47%), Gaps = 11/144 (7%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-KNQETFARVSGYCEQNDIHSPYVT 956
L+G SG GKTTL+ +LAG + G I + G N R Q+ P++T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD--SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMT 58
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
V E++ + +R V + K V E + LV+L+ D LS Q++R+
Sbjct: 59 VEENVAFGLKMR---KVPRAEIKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVA 110
Query: 1017 IAVELVANPSIIFMDEPTSGLDAR 1040
+A LV P I+ +DEP S LD +
Sbjct: 111 LARALVFKPKILLLDEPLSALDKK 134
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 7e-10
Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 19/217 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQET 937
+L V R G L L+G +GAGKTTL+ + G T G + ++G +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT--AGTVLVAGDDVEALSARAA 75
Query: 938 FARVSGYCEQNDIHSPYV--TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
RV+ + + + V E R + +T + V+ ME +
Sbjct: 76 SRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAA--VERAMERTGVAQFA 133
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D V+ LS +R+R+ +A L ++ +DEPT+ LD + VR VD
Sbjct: 134 DR-----PVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD 188
Query: 1056 GRTVVCTIHQPSIDIFEAF-DELLLLKRGGRVIYAGP 1091
G+T V IH +D+ + DEL+LL GRV AGP
Sbjct: 189 GKTAVAAIH--DLDLAARYCDELVLLA-DGRVRAAGP 222
|
Length = 402 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 8e-10
Identities = 59/195 (30%), Positives = 80/195 (41%), Gaps = 52/195 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ +S V+ LLGP GAGKTT + L LG +G I+ CG E VP R
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRML---LGLTHPDAGSISLCG----EPVPSR 74
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D + TVRE L GR G LS +A + P
Sbjct: 75 ARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG----------LSAAAARALVPP--- 121
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+L+ L+ AD VG+ +SGG K+R+T LV
Sbjct: 122 ---------------------LLEFAKLENKADAKVGE-----LSGGMKRRLTLARALVN 155
Query: 360 TANVLYMDEISTGLD 374
+VL +DE +TGLD
Sbjct: 156 DPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 8e-10
Identities = 40/144 (27%), Positives = 72/144 (50%), Gaps = 19/144 (13%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPY 954
L+G +GAGK+TL+ ++ G R T G+I G+P ++ ++ E ++
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPT----SGEIIFDGHPWTRKDLHKIGSLIESPPLYE-N 84
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
+T E+L L + + +DEV+ +V+L + G S ++R
Sbjct: 85 LTARENLKVHTTLL---GLPDSR----IDEVLNIVDLTN-----TGKKKAKQFSLGMKQR 132
Query: 1015 LTIAVELVANPSIIFMDEPTSGLD 1038
L IA+ L+ +P ++ +DEPT+GLD
Sbjct: 133 LGIAIALLNHPKLLILDEPTNGLD 156
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 62/273 (22%), Positives = 109/273 (39%), Gaps = 69/273 (25%)
Query: 166 MLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
M+E + + V LKDV+ ++ ++GP G+GK+TL L L G L
Sbjct: 1 MIE-LKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTL-LNLLGGL---D 55
Query: 226 RA-SGKITYCGHELNEFVPQ-------RTCAYISQ-HDLHHGEMTVRETLDFSGRCLGVG 276
+ SG++ G +L + + + ++ Q +L ++TV E +
Sbjct: 56 KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL-LPDLTVLENV---------- 104
Query: 277 TRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL-DICADTMV 335
EL + AG A + +L++LGL D
Sbjct: 105 ---ELPLLI------AGKSAGRRKRA---------------AEELLEVLGLEDRLLKKKP 140
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG-LDSSTTFQICKFLKQMVHILDV 394
+ +SGGQ++RV L+ ++ DE TG LDS T ++ + L+++
Sbjct: 141 SE-----LSGGQQQRVAIARALINNPKIILADEP-TGNLDSKTAKEVLELLRELNKERGK 194
Query: 395 TMIVALLQPAPETYDL-----FDDIILLSEGQI 422
T+I+ T+D D +I L +G+I
Sbjct: 195 TIIMV-------THDPELAKYADRVIELKDGKI 220
|
Length = 226 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 72/268 (26%), Positives = 106/268 (39%), Gaps = 66/268 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ D+S + LLGP GAGK+T+ L G + D GKIT L E VP R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITV----LGEPVPSR 71
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D E TVRE L GR G +S RE +A I
Sbjct: 72 ARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG----------MSTREIEAVIPS--- 118
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+L+ L+ AD V +SGG K+R+T L+
Sbjct: 119 ---------------------LLEFARLESKADVRVAL-----LSGGMKRRLTLARALIN 152
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDII 415
+L +DE +TGLD I + L+ ++ IL T + E L D +
Sbjct: 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME------EAERLCDRLC 206
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
+L G+ + +G +++ E +G C
Sbjct: 207 VLESGRKIAEGRPHALID--EQIG--CN 230
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 69/298 (23%), Positives = 113/298 (37%), Gaps = 65/298 (21%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
+V L DVS + + ++G GAGK+TL L L L + SG + G +L
Sbjct: 15 GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTL-LRLINLLERP--TSGSVFVDGQDLT 71
Query: 240 EFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
++ I QH TV E + F LA + + E +
Sbjct: 72 ALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLE----------LAGVPKAEIKQR 121
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKR 350
+ +L+++GL D+ R +SGGQK+R
Sbjct: 122 VAE------------------------LLELVGLS--------DKADRYPAQLSGGQKQR 149
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE-TYD 409
V L +L DE ++ LD TT I + LK + L +T++ L+ E
Sbjct: 150 VAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIV--LITHEMEVVKR 207
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFR 467
+ D + +L +G++V +G V E F + P+ +F+ E E+ R
Sbjct: 208 ICDRVAVLDQGRLVEEGT---VSEVFAN-----PKHAITQEFIGETLEIDLPEELLER 257
|
Length = 339 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 1e-09
Identities = 58/217 (26%), Positives = 92/217 (42%), Gaps = 26/217 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFA 939
L +SG R G + L+G +GAGK+TL+ +AG +G G I+ +G P A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---SGSIQFAGQPLEAWSATELA 71
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSM 998
R Y Q +P W L+ K R +++V + L L S
Sbjct: 72 RHRAYLSQQ--QTP------PFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRST 123
Query: 999 VGLPGVSGLSTEQRKRLT---IAVELVANPS--IIFMDEPTSGLDARAAAIVMRTVRNTV 1053
L G QR RL + + ANP+ ++ +DEP + LD + + R +
Sbjct: 124 NQLSG----GEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G +V + H + + A LLKR G+++ +G
Sbjct: 180 QQGLAIVMSSHDLNHTLRHA-HRAWLLKR-GKLLASG 214
|
Length = 248 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 1e-09
Identities = 52/194 (26%), Positives = 84/194 (43%), Gaps = 24/194 (12%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 933
+L +S PG AL+G SG GK+T++ D +G ++G I
Sbjct: 17 PILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL---LDGV-DIRDL-- 70
Query: 934 NQETFARVSGYCEQNDIHSP---YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
N G Q P T+ E++ Y +V+ +K + + ++
Sbjct: 71 NLRWLRSQIGLVSQE----PVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDF--IMS 124
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L D++VG S LS Q++R+ IA L+ NP I+ +DE TS LDA + +V +
Sbjct: 125 LPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEAL- 182
Query: 1051 NTVDTGRTVVCTIH 1064
+ GRT + H
Sbjct: 183 DRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 1e-09
Identities = 71/276 (25%), Positives = 125/276 (45%), Gaps = 37/276 (13%)
Query: 853 LSLTFDNMSYFVD--MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM 910
+++ FDN+SY P E + +H V+ F G A++G +G+GK+TL+
Sbjct: 1 MTIRFDNVSYTYQKGTPYEHQA----------IHDVNTEFEQGKYYAIVGQTGSGKSTLI 50
Query: 911 DVLAG--RKTGGYIE-GDIKISGYPKNQE--TFARVSGYCEQNDIHSPYVTVYESLLYSA 965
+ + T G + DI I+ K++ + G Q ES L+
Sbjct: 51 QNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ---------FPESQLFED 101
Query: 966 WLRLSSDVDTKKRKMFVDEVME-----LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE 1020
+ K KM +DEV L++L D M P +S Q +++ I
Sbjct: 102 TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSP--FQMSGGQMRKIAIVSI 159
Query: 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLL 1079
L NP II +DEPT+GLD ++ VMR +++ D +T++ H + ++ DE+++
Sbjct: 160 LAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIV 218
Query: 1080 LKRGGRVIYAGP--LGHESHKLIEYFEAVPGVPKIK 1113
+K G V P L + KL ++ +P + +++
Sbjct: 219 MKEGSIVSQTSPKELFKDKKKLADWHIGLPEIVQLQ 254
|
Length = 286 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 18/218 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET 937
D + L +S G TAL+G +GAGK+TL+ L G G +K+ G N E
Sbjct: 16 DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ--RGRVKVMGREVNAEN 73
Query: 938 F----ARVSGYCEQNDIHSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELK 992
++V + D TV++ + + + L D + ++R V+E ++ V +
Sbjct: 74 EKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKD-EVERR---VEEALKAVRMW 129
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D LS Q+KR+ IA L +P +I +DEP + LD R +M +
Sbjct: 130 DFRDK-----PPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRL 184
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G+TV+ H +D+ + + +++ + GRV+ G
Sbjct: 185 HNQGKTVIVATH--DVDLAAEWADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 47/186 (25%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG--YPKNQETFA 939
LL +S G L L G +GAGKTTL+ ++AG +G+I K+ T+
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE--KGEILFERQSIKKDLCTYQ 73
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ + +PY+T+ E+ LY D+ + + E+ L L+ L D
Sbjct: 74 KQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLFSLEHLIDYPC 125
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
GL LS+ Q++++ + ++ + +DEP LD + ++ ++ G V
Sbjct: 126 GL-----LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 1060 VCTIHQ 1065
+ T HQ
Sbjct: 181 LLTSHQ 186
|
Length = 200 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 2e-09
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
L +VS +K + L+GP G+GK+TL+ A+AG L SG+I G ++ +
Sbjct: 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLP 67
Query: 243 PQ---RTCAYISQHDLHHGE 259
+ R Y+ Q L G+
Sbjct: 68 LEELRRRIGYVPQ--LSGGQ 85
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-09
Identities = 50/194 (25%), Positives = 75/194 (38%), Gaps = 41/194 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
L+ VS V P L+GP GAGK+TL+ L G + G I G L +
Sbjct: 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV---DPTEGSIAVNGVPLADADADSW 394
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+ A++ QH T+ E + AE+ ++AG
Sbjct: 395 RDQIAWVPQHP-FLFAGTIAENIRL-------ARPDASDAEIREALERAG---------L 437
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+ VA Q GL DT +G+ G+SGGQ +R+ + A +
Sbjct: 438 DEFVAALPQ-------------GL----DTPIGEG-GAGLSGGQAQRLALARAFLRDAPL 479
Query: 364 LYMDEISTGLDSST 377
L +DE + LD+ T
Sbjct: 480 LLLDEPTAHLDAET 493
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 63/248 (25%), Positives = 102/248 (41%), Gaps = 56/248 (22%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+V L D++ + +LLGP G GKTT + +AG SG+I G ++ +
Sbjct: 12 NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLP 68
Query: 243 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P R A + Q+ + MTV + + F L R P EID
Sbjct: 69 PKDRDIAMVFQNYALYPHMTVYDNIAFG---------------LKLR-----KVPKDEID 108
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++ VA ++L ++ + D + +SGGQ++RV G +V
Sbjct: 109 ERVREVA--------------ELLQIE-----HLLDRKPKQLSGGQRQRVALGRAIVREP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------LFDDII 415
V MDE + LD+ Q+ LK++ L T I T+D + D I
Sbjct: 150 KVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYV-------THDQVEAMTMADRIA 202
Query: 416 LLSEGQIV 423
++++GQI
Sbjct: 203 VMNDGQIQ 210
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 53/172 (30%), Positives = 79/172 (45%), Gaps = 25/172 (14%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA-- 939
+LH+VS G + A++G SG+GK+TL+ +L G T GD+ +G P ++ + A
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP--TSGDVIFNGQPMSKLSSAAK 81
Query: 940 -----RVSGYCEQNDIHSPYVTVYES----LLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+ G+ Q P T E+ LL + KK +E++
Sbjct: 82 AELRNQKLGFIYQFHHLLPDFTALENVAMPLL----------IGKKKPAEINSRALEMLA 131
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
L P S LS +R+R+ IA LV NP ++ DEPT LDAR A
Sbjct: 132 AVGLEHRANHRP--SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181
|
Length = 233 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 2e-09
Identities = 60/233 (25%), Positives = 105/233 (45%), Gaps = 23/233 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930
K G ++ L VS G + ++G SGAGK+TL+ + G + G + + G
Sbjct: 9 KVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER--PTSGSVLVDG 66
Query: 931 Y------PKNQETFARVSGYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
K R G Q N + S TV+E++ L ++ V + + V
Sbjct: 67 TDLTLLSGKELRKARRRIGMIFQHFNLLSSR--TVFENVALP--LEIAG-VPKAEIEERV 121
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
E++ELV L+ D+ P + LS Q++R+ IA L NP ++ DE TS LD
Sbjct: 122 LELLELVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETT 176
Query: 1043 AIVMRTVRNT-VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094
++ +R+ + G T+V H+ + + D + ++++ G V+ G +
Sbjct: 177 QSILALLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEK-GEVVEEGTVEE 227
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 2e-09
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 24/208 (11%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR--VSGYCEQ 947
F G +TA++G SG+GK+TL++++AG +T G + I+G A VS ++
Sbjct: 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETPQS--GRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 948 NDIHSPYVTVYES--LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
N++ ++TV ++ L S L+L++ D + ++ + V L L LPG
Sbjct: 79 NNLF-AHLTVEQNVGLGLSPGLKLTA-EDRQA----IEVALARVGLAGL---EKRLPGE- 128
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD-ARAAAIVMRTVRNTV--DTGRTVVCT 1062
LS +R+R+ +A LV + ++ +DEP + LD A A M + + +T TV+
Sbjct: 129 -LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAE--MLDLVLDLHAETKMTVLMV 185
Query: 1063 IHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
HQP D ++ L GR+ G
Sbjct: 186 THQPE-DAKRLAQRVVFLDN-GRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 28/198 (14%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE 936
+L + + G + ++G SG+GK+TL+ + G I +K++ KN
Sbjct: 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNIN 72
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV----MELVELK 992
+ G Q P++TV E++ + K + M E +EL+E
Sbjct: 73 ELRQKVGMVFQQFNLFPHLTVLENITLAP---------IKVKGMSKAEAEERALELLEK- 122
Query: 993 SLNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
VGL + LS Q++R+ IA L NP ++ DEPTS LD V+
Sbjct: 123 ------VGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLD 176
Query: 1048 TVRNTVDTGRTVVCTIHQ 1065
+++ + G T+V H+
Sbjct: 177 VMKDLAEEGMTMVVVTHE 194
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 52/197 (26%), Positives = 87/197 (44%), Gaps = 27/197 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
++L +S G + ++G SG+GK+TL+ L G G I D + G K+
Sbjct: 15 KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILK 74
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV----MELVELKS 993
R G Q P++TV E++ + K +K+ E +EL+E
Sbjct: 75 LRRKVGMVFQQFNLFPHLTVLENVTLAP---------VKVKKLSKAEAREKALELLE--- 122
Query: 994 LNDSMVGLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
VGL + LS Q++R+ IA L +P ++ DEPTS LD V+
Sbjct: 123 ----KVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDV 178
Query: 1049 VRNTVDTGRTVVCTIHQ 1065
+++ + G T++ H+
Sbjct: 179 MKDLAEEGMTMIIVTHE 195
|
Length = 240 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 3e-09
Identities = 62/248 (25%), Positives = 102/248 (41%), Gaps = 59/248 (23%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL--NEFV 242
R+L D+S VK + LGP GAGKTT M + G + D SG+IT+ G N
Sbjct: 14 RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEA 70
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+R A I + +T RE L R LG+ ID
Sbjct: 71 LRRIGALIEAPGF-YPNLTARENLRLLARLLGI--------------------RKKRIDE 109
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
VL ++GL A V G S G K+R+ L+G +
Sbjct: 110 ------------------VLDVVGLKDSAKKKVK-----GFSLGMKQRLGIALALLGNPD 146
Query: 363 VLYMDEISTGLDSSTTFQICKFL----KQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE + GLD ++ + + Q + +L + +++ +Q + D I +++
Sbjct: 147 LLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQ------KVADRIGIIN 200
Query: 419 EGQIVYQG 426
+G+++ +G
Sbjct: 201 KGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 67/253 (26%), Positives = 104/253 (41%), Gaps = 48/253 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L DVS + + LLGP G+GKTTL+ +AG D SG I + G + + Q
Sbjct: 16 VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQ 72
Query: 245 -RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R ++ QH MTV + + F L V R E E R K
Sbjct: 73 ERNVGFVFQHYALFRHMTVFDNVAFG---LRVKPRSERPPEAEIRAK------------- 116
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+LK++ LD AD +SGGQ++RV L V
Sbjct: 117 --------------VHELLKLVQLDWLADRYPAQ-----LSGGQRQRVALARALAVEPKV 157
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI- 422
L +DE LD+ ++ ++L+++ L VT V + E ++ D ++++++G+I
Sbjct: 158 LLLDEPFGALDAKVRKELRRWLRRLHDELHVTT-VFVTHDQEEALEVADRVVVMNKGRIE 216
Query: 423 -------VYQGPR 428
VY P
Sbjct: 217 QVGTPDEVYDHPA 229
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 3e-09
Identities = 63/210 (30%), Positives = 99/210 (47%), Gaps = 30/210 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVS-GYCEQN- 948
G + AL+G +GAGK+TL G + T G + + Y K R + G QN
Sbjct: 28 GEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87
Query: 949 --DIHSPYVTVYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
+ +P TV E + + L LS + + +KR V E LK+ VG+ G
Sbjct: 88 DDQLFAP--TVEEDVAFGPLNLGLSKE-EVEKR------VKE--ALKA-----VGMEGFE 131
Query: 1006 G-----LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
LS Q+KR+ IA L P II +DEPTSGLD A+ +M+ + + G T++
Sbjct: 132 NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITII 191
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ H +D+ + + + + G++I G
Sbjct: 192 ISTHD--VDLVPVYADKVYVMSDGKIIKEG 219
|
Length = 275 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 21/187 (11%)
Query: 894 VLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPKNQETFA--RVSGYC 945
+ ALMG SG GK+TL+ + L +EG++++ G Y + + R G
Sbjct: 31 GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMV 90
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-----LNDSMVG 1000
Q P++T+Y+++ + ++L+ V +KK +DE +E K+ + D +
Sbjct: 91 FQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKE---LDERVEWALKKAALWDEVKDRLND 145
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
P S LS QR+RL IA L P I+ MDEPT+ +D A + + + T+V
Sbjct: 146 YP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE-LKKEYTIV 202
Query: 1061 CTIHQPS 1067
H P+
Sbjct: 203 LVTHSPA 209
|
Length = 253 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 4e-09
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 10/93 (10%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R +LKDVS +KP ++GP G+GK+TL+ L SG+I G +L +
Sbjct: 13 RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT---SGEILIDGVDLRDL 69
Query: 242 VPQ---RTCAYISQHD-LHHGEMTVRETLDFSG 270
+ + AY+ Q L G T+RE + SG
Sbjct: 70 DLESLRKNIAYVPQDPFLFSG--TIRENI-LSG 99
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 4e-09
Identities = 67/244 (27%), Positives = 104/244 (42%), Gaps = 36/244 (14%)
Query: 859 NMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--R 916
+ ++ M K+ G + L SV+ PG + AL+G +GAGK+TLM VL+G
Sbjct: 1 MATPYISMAGIGKSFGP----VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSG----YCEQNDIHSPYVTVYESLLYSAWLRLSSD 972
T G I I Y K A G Y E + I +TV E+L R +
Sbjct: 57 PTKGTI--TINNINYNKLDHKLAAQLGIGIIYQELSVIDE--LTVLENLYIG---RHLTK 109
Query: 973 -------VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025
+D ++ ++ ++ V LK D V LS ++ L IA L+ +
Sbjct: 110 KVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDA 164
Query: 1026 SIIFMDEPTSGLDARAAA---IVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082
+I MDEPTS L + ++M +R G +V H+ + +I D ++K
Sbjct: 165 KVIIMDEPTSSLTNKEVDYLFLIMNQLRK---EGTAIVYISHKLA-EIRRICDRYTVMKD 220
Query: 1083 GGRV 1086
G V
Sbjct: 221 GSSV 224
|
Length = 510 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 39/222 (17%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQET 937
+L VS PG +TAL+G SG+GK+T++ +L + GG + D K IS Y
Sbjct: 28 LVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQY------ 81
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLR--LSSDVDTKKRKMFVDEVMELV----- 989
E +HS V E +L++ L+ ++ + + + V E
Sbjct: 82 --------EHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCS----FECVKEAAQKAHA 129
Query: 990 -----ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
EL S D+ VG G S LS Q++R+ IA L+ NP ++ +DE TS LDA +
Sbjct: 130 HSFISELASGYDTEVGEKG-SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086
V + + + RTV+ H+ + E D++L+L GGR+
Sbjct: 189 VQQALYDW-PERRTVLVIAHR--LSTVERADQILVLD-GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 5e-09
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 17/198 (8%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQ---ETFARVSGYC 945
G AL+G SGAGKT+L++ L G ++ +G +KI+G + E++ + +
Sbjct: 374 PAGQRIALVGPSGAGKTSLLNALLG-----FLPYQGSLKINGIELRELDPESWRKHLSWV 428
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
QN P+ T+ +++L + +V E + L+ L D+ +G +
Sbjct: 429 GQNP-QLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQ-GL-DTPIG-DQAA 484
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
GLS Q +RL +A L+ ++ +DEPT+ LDA + +VM+ + N +T + HQ
Sbjct: 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQAL-NAASRRQTTLMVTHQ 543
Query: 1066 PSIDIFEAFDELLLLKRG 1083
++ +D++ +++ G
Sbjct: 544 --LEDLAQWDQIWVMQDG 559
|
Length = 588 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 5e-09
Identities = 54/201 (26%), Positives = 95/201 (47%), Gaps = 21/201 (10%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQN---DI 950
A++G +GAGK+TL G G + I G P +N + G QN I
Sbjct: 34 AVIGPNGAGKSTLFRHFNGILKPT--SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010
SP TV + + + + L D +T + V + ++ L+ L D +P LS
Sbjct: 92 FSP--TVEQDIAFGP-INLGLDEETVAHR--VSSALHMLGLEELRDR---VP--HHLSGG 141
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSID 1069
++KR+ IA + P ++ +DEPT+GLD + ++ + + +T G TV+ + HQ +D
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ--LD 199
Query: 1070 IFEAFDELLLLKRGGRVIYAG 1090
+ + + + GR++ G
Sbjct: 200 LVPEMADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 6e-09
Identities = 48/163 (29%), Positives = 78/163 (47%), Gaps = 27/163 (16%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YPKNQETFA--RVSG 943
P +TA +G SG GK+T++ L G +EG++ + G Y + A R G
Sbjct: 29 PRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIG 88
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS------ 997
Q P +++ ++++ A L+L+ + K +DE++E KSL +
Sbjct: 89 MVFQRPNPFPTMSIRDNVV--AGLKLNG----VRNKKDLDELVE----KSLRGANLWNEV 138
Query: 998 --MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+ PG GLS Q++RL IA + P ++ MDEP S LD
Sbjct: 139 KDRLDKPG-GGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180
|
Length = 258 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-09
Identities = 72/268 (26%), Positives = 108/268 (40%), Gaps = 66/268 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
++ +S V LLGP GAGK+T+ + G D +GKIT L VP R
Sbjct: 56 VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITV----LGVPVPAR 108
Query: 246 T------CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+ Q D E TVRE L GR G+ TR E
Sbjct: 109 ARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTR--------------------E 148
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
I+A + ++ L+ L+ AD V D +SGG K+R+T L+
Sbjct: 149 IEAVIPSL--------------LEFARLESKADARVSD-----LSGGMKRRLTLARALIN 189
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDII 415
+L +DE +TGLD I + L+ ++ IL T + E L D +
Sbjct: 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME------EAERLCDRLC 243
Query: 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCP 443
+L G+ + +G +++ EH+G C
Sbjct: 244 VLEAGRKIAEGRPHALID--EHIG--CQ 267
|
Length = 340 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 8e-09
Identities = 59/253 (23%), Positives = 95/253 (37%), Gaps = 52/253 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+LK V V+ + ++GP G+GK+TL+ + G L D SG++ G +++
Sbjct: 14 TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEA 70
Query: 245 ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R + Q +TV E + F L E +R +
Sbjct: 71 ELYRLRRRMGMLFQSGALFDSLTVFENVAF------------PLREHTRL-------SEE 111
Query: 299 EID--AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
EI K AV GL D + +SGG KKRV
Sbjct: 112 EIREIVLEKLEAV----------------GLRGAEDLYPAE-----LSGGMKKRVALARA 150
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L +L DE + GLD + I ++ + L +T I+ + + D I +
Sbjct: 151 LALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAV 209
Query: 417 LSEGQIVYQGPRD 429
L +G+IV +G +
Sbjct: 210 LYDGKIVAEGTPE 222
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 63/262 (24%), Positives = 109/262 (41%), Gaps = 56/262 (21%)
Query: 173 LLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
L L K R V LK +S ++ + +GP GAGKTT + L+G L SG++
Sbjct: 23 LKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVR 79
Query: 233 YCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
G VP +R ++ + + G+ + L + L V + LLA +
Sbjct: 80 VAG-----LVPWKRRKKFLRRIGVVFGQ---KTQLWWD---LPVIDSFYLLAAIYD---- 124
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+ P F K + D + ++L L+ DT V R +S GQ+ R
Sbjct: 125 --LPP----ARFKKRL-----------DELSELLDLEELLDTPV-----RQLSLGQRMRA 162
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ +L++DE + GLD I FLK+ T+++ ++ +
Sbjct: 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLT-------SHYM- 214
Query: 412 DDI-------ILLSEGQIVYQG 426
DI +++ +G+++Y G
Sbjct: 215 KDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 9e-09
Identities = 67/255 (26%), Positives = 101/255 (39%), Gaps = 59/255 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL+ VS V +T +LG G GKTTL+ L G L SG I G ++ + P
Sbjct: 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHE 71
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI- 300
AY+ Q +TV E L G LA L RR + K EI
Sbjct: 72 RARAGIAYVPQGREIFPRLTVEENLL-------TG-----LAALPRRSR----KIPDEIY 115
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM--RRG--ISGGQKKRVTTGEM 356
+ F VLK EM RRG +SGGQ++++
Sbjct: 116 ELFP----------------VLK--------------EMLGRRGGDLSGGQQQQLAIARA 145
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
LV +L +DE + G+ S I + ++++ + I+ + Q +L D +
Sbjct: 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMA-ILLVEQYLDFARELADRYYV 204
Query: 417 LSEGQIVYQGPRDNV 431
+ G++V G D +
Sbjct: 205 MERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 50/211 (23%), Positives = 81/211 (38%), Gaps = 46/211 (21%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELN 239
+LK ++ + + LLG GAGK+TL+L L G L G L + Y L
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLL 64
Query: 240 EFVPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
E ++ + Q D V + + F LG+ AE+ RR ++A
Sbjct: 65 ER--RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSE-----AEVERRVREA------ 111
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ AV +G + +SGG+KKRV +
Sbjct: 112 -----LTAVGASGLR-----------------------ERPTHCLSGGEKKRVAIAGAVA 143
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
+VL +DE + GLD + Q+ L+++
Sbjct: 144 MRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 63/247 (25%), Positives = 108/247 (43%), Gaps = 39/247 (15%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL ++S +KP + ++G G+GK+TL KL + +VP+
Sbjct: 17 ILDNISLRIKPGEVVGIVGRSGSGKSTL-----TKLIQRF---------------YVPEN 56
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+ HDL + + R +GV + +L S R+ A P ++ ++
Sbjct: 57 GRVLVDGHDLALADPA------WLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIE 110
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
A +AG D++ + L DT+VG E G+SGGQ++R+ L+ +L
Sbjct: 111 AAKLAGAH-----DFISE---LPEGYDTIVG-EQGAGLSGGQRQRIAIARALIHNPRILI 161
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQ 425
DE ++ LD + I + + + V +I L T D II++ +G+IV Q
Sbjct: 162 FDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLS----TVKNADRIIVMEKGRIVEQ 217
Query: 426 GPRDNVL 432
G D +L
Sbjct: 218 GSHDELL 224
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 65/274 (23%), Positives = 120/274 (43%), Gaps = 66/274 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-R 245
LK+VS V+ ++LGP G+GK+ L+ +AG + D SGKI G ++ P+ R
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKR 71
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
+Y+ Q+ MTV + + + + + +K EI+ +
Sbjct: 72 DISYVPQNYALFPHMTVYKNIAYGLK-------------KRKVDK-------KEIERKVL 111
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
+A ++LG+D + + +SGG+++RV LV +L
Sbjct: 112 EIA--------------EMLGID-----HLLNRKPETLSGGEQQRVAIARALVVNPKILL 152
Query: 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE------ 419
+DE + LD T ++ + LK++ VT++ T+D F++ L++
Sbjct: 153 LDEPFSALDVRTKEKLREELKKIRKEFGVTVLHV-------THD-FEEAWALADKVAIML 204
Query: 420 -GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G+++ G + V FK P+ + VA+FL
Sbjct: 205 NGKLIQVGKPEEV--------FKKPKNEFVAEFL 230
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 1e-08
Identities = 52/269 (19%), Positives = 104/269 (38%), Gaps = 51/269 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-Q 244
+L D+S ++ + L+G G GKTTL+ A+AG + +G+I +L P +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA-GLTGRIAIADRDLTHAPPHK 78
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R A + Q+ + V + + F G+ + A+++ R A
Sbjct: 79 RGLALLFQNYALFPHLKVEDNVAF-----GLRAQKMPKADIAERVADA------------ 121
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
LK++GL + +SGG ++R+ + +VL
Sbjct: 122 -----------------LKLVGL-----GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVL 159
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE + LD++ + + + + L I+ + + L D ++ +G++
Sbjct: 160 LLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA 219
Query: 425 QG-PRDNVLEFFEHMGFKCPERKGVADFL 452
G P+ ++ P A+FL
Sbjct: 220 HGEPQ----ALYDA-----PADGFAAEFL 239
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 1e-08
Identities = 53/221 (23%), Positives = 100/221 (45%), Gaps = 29/221 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQE 936
+ L + + G A++G SG+GK+TL+ +LAG +G I ++G Q
Sbjct: 352 KALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEIASLDEQA 409
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+S ++ + S T+ ++L + +SD + + ++ V L+ L +
Sbjct: 410 LRETISVLTQRVHLFSG--TLRDNLRLAN--PDASDEE-------LWAALQQVGLEKLLE 458
Query: 997 SM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
S +G G LS +R+RL +A L+ + + +DEPT GLD V+ +
Sbjct: 459 SAPDGLNTWLGEGG-RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALL 517
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+ G+T++ H+ E D +++L G++I G
Sbjct: 518 FEHAE-GKTLLMVTHRLR--GLERMDRIIVL-DNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-08
Identities = 72/264 (27%), Positives = 112/264 (42%), Gaps = 39/264 (14%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
RP + ALMG +GAGK+TL+ L G +K G I G + ++ S +N
Sbjct: 22 RPHSIHALMGENGAGKSTLLKCLFGIYQKD----SGSILFQGKEIDFKS----SKEALEN 73
Query: 949 DI---HSPYVTVYE-SLLYSAWL-RLSSDVDTKKRKMFVDEVMELVELKSLNDSM----V 999
I H V + S++ + WL R + MFVD+ + K++ D +
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYP------TKGMFVDQDKMYRDTKAIFDELDIDID 127
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
V+ LS Q + + IA N I+ MDEPTS L + + +R + G +
Sbjct: 128 PRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGI 187
Query: 1060 VCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLI-------EYFEAVPGVPKI 1112
V H+ +IF+ DE+ +L R G+ I PL + I + P K
Sbjct: 188 VYISHKME-EIFQLCDEITIL-RDGQWIATQPLAGLTMDKIIAMMVGRSLTQRFP--DKE 243
Query: 1113 KEAYNPATWMLEVSNISVENQLGI 1136
+ P +LEV N++ Q I
Sbjct: 244 NK---PGEVILEVRNLTSLRQPSI 264
|
Length = 491 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-08
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 34/219 (15%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKISG 930
R +L+ +S G A++G SGAGK+T++ DV +G T I+G DI+
Sbjct: 275 RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT---IDGQDIRDV- 330
Query: 931 YPKNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
Q++ R G Q ND T+ ++ Y R + + ++
Sbjct: 331 ---TQQSLRRAIGIVPQDTVLFND------TIAYNIKYG---RPDATAEEVGAAAEAAQI 378
Query: 986 MELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+ ++ L D+ VG G+ LS +++R+ IA ++ NP I+ +DE TS LD
Sbjct: 379 HDFIQSLPEGYDTGVGERGLK-LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQA 437
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ +R V GRT + H+ S I +A DE+++L G
Sbjct: 438 IQAALRE-VSAGRTTLVIAHRLST-IIDA-DEIIVLDNG 473
|
Length = 497 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE---FV 242
+LKD+S ++P ++GP G+GK+TL+ L SG+I G ++ +
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDS 400
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
++ +SQ D T+RE + G E+ K A
Sbjct: 401 LRKRIGIVSQ-DPLLFSGTIRENIAL-------GRPDATDEEIEEALKLANAHEF----- 447
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
I L DT+VG E +SGGQ++R+ L+
Sbjct: 448 ---------------------IANLPDGYDTIVG-ERGVNLSGGQRQRLAIARALLRNPP 485
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DE ++ LD+ T I LK+++ +I L T D II+L G+I
Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS----TIKNADRIIVLDNGRI 541
Query: 423 VYQGPRDNVLE 433
V +G + +L
Sbjct: 542 VERGTHEELLA 552
|
Length = 567 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-08
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 55/253 (21%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ + LK+ + + +LG G+GK+TL+ LAG G IT G E+
Sbjct: 349 QQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASL 405
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
Q T + ++Q +H T+R+ L LA
Sbjct: 406 DEQALRETISVLTQ-RVHLFSGTLRDNL--------------RLANP------------- 437
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
DA + + A Q+ L + +T +G E R +SGG+++R+ L+
Sbjct: 438 --DASDEELWAALQQVGL-EKL---LESAPDGLNTWLG-EGGRRLSGGERRRLALARALL 490
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDD 413
A + +DE + GLD T Q+ L + H T+++ T+ L D
Sbjct: 491 HDAPLWLLDEPTEGLDPITERQVLALLFE--HAEGKTLLMV-------THRLRGLERMDR 541
Query: 414 IILLSEGQIVYQG 426
II+L G+I+ +G
Sbjct: 542 IIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 60/216 (27%), Positives = 94/216 (43%), Gaps = 17/216 (7%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGR-----KTGGYIE---GDIKISGYPKNQET 937
VS PG + ++G SG+GK+TL+ LAGR T YI ++++ + +
Sbjct: 22 VSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81
Query: 938 F-ARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R G+ QN + V L + + +E VE+
Sbjct: 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDP-- 139
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-D 1054
+ LP S ++RL IA LV P ++FMDEPT GLD A ++ +R V D
Sbjct: 140 TRIDDLP--RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD 197
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
G V+ H + A LL++++ GRV+ +G
Sbjct: 198 LGLAVIIVTHDLGVARLLA-QRLLVMQQ-GRVVESG 231
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 2e-08
Identities = 52/180 (28%), Positives = 80/180 (44%), Gaps = 30/180 (16%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 933
L+ ++ +TAL+G SG GK+TL+ D++ G + I GDI +G
Sbjct: 20 HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR----ITGDILYNGENI 75
Query: 934 NQETFARVS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
V+ G Q P ++YE++ Y R+ + + K V++ ++
Sbjct: 76 MDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGP--RIHGEKNKKTLDTIVEKSLKG 132
Query: 989 VEL-----KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
L L+DS + L G Q++RL IA L NP +I MDEP S LD A A
Sbjct: 133 AALWDEVKDRLHDSALSLSG------GQQQRLCIARTLAVNPEVILMDEPCSALDPIATA 186
|
Length = 253 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 24/177 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAG-RKTGGYIEGDIKISGYP 932
+ L +++ +TAL+G SG GK+TL+ D++ G R G + I
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 933 KNQETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-- 989
+ R G Q +P+ +++Y+++ Y RL D K+ V+E ++
Sbjct: 75 IDVVELRRRVGMVFQKP--NPFPMSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAAL 130
Query: 990 --ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
E+K L+DS +GL G Q++RL IA L P ++ +DEPTS LD A
Sbjct: 131 WDEVKDRLHDSALGLSG------GQQQRLCIARALAVEPEVLLLDEPTSALDPIATG 181
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 19/196 (9%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA----RVSGYCEQN 948
G + A+MG SGAGK+TL++++AG G IK++ ++ A VS ++N
Sbjct: 24 GEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVND--QSHTGLAPYQRPVSMLFQEN 79
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
++ ++TV +++ L ++ ++++ VD ++ + D + LP LS
Sbjct: 80 NLF-AHLTVRQNI--GLGLHPGLKLNAEQQEKVVDAAQQV----GIADYLDRLPE--QLS 130
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPS 1067
QR+R+ +A LV I+ +DEP S LD ++ V+ RT++ H S
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 1068 IDIFEAFDELLLLKRG 1083
D ++ ++ +G
Sbjct: 191 -DARAIASQIAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 13/90 (14%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+S GQKKRV +LV VL +DE + GLD +I K L +M L +T+I+A
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIA--- 198
Query: 403 PAPETYDL------FDDIILLSEGQIVYQG 426
T+D+ D++ ++ EG+++ QG
Sbjct: 199 ----THDIDIVPLYCDNVFVMKEGRVILQG 224
|
Length = 283 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 42/181 (23%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 930
Q L ++ +TAL+G SG GK+T + D++ K IEG++ + G
Sbjct: 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVK----IEGEVLLDGQDI 72
Query: 931 YPKNQETFA---RVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
Y + + RV G Q +P+ +++Y+++ Y R D KK +DE++
Sbjct: 73 YKSDIDVNQLRKRV-GMVFQQP--NPFPMSIYDNVAYGP--RTHGIKDKKK----LDEIV 123
Query: 987 ELV--------ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
E E+K L S +GL G Q++RL IA L P ++ MDEPTS L
Sbjct: 124 EKSLKGAALWDEVKDRLKKSALGLSG------GQQQRLCIARALAVEPEVLLMDEPTSAL 177
Query: 1038 D 1038
D
Sbjct: 178 D 178
|
Length = 250 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 3e-08
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
GLS Q++R+ IA L P I+ DEPT+GLD + +M+ + + +TV H
Sbjct: 176 GLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHT 235
Query: 1066 PSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ E DE++++ +G + P
Sbjct: 236 ME-HVLEVADEVIVMDKGKILKTGTP 260
|
Length = 320 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 6/197 (3%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ- 935
ED+ ++L V+ + G + A+MG +G+GK+TL +AG + G I G +
Sbjct: 11 EDK-EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLEL 69
Query: 936 --ETFARVSGYCE-QNDIHSPYVTVYESLLYSAWLRLSSDVDTK-KRKMFVDEVMELVEL 991
+ AR + Q P V+ E L + R S+ + F+ + + L
Sbjct: 70 EPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLAL 129
Query: 992 KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
+++ + G S ++KR I + P + +DE SGLD A IV +
Sbjct: 130 LGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR 189
Query: 1052 TVDTGRTVVCTIHQPSI 1068
+ R+ + H +
Sbjct: 190 LREPDRSFLIITHYQRL 206
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 37/195 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA-SGKITYCGHELNEFVP 243
ILK V+ VK + ++GP G+GK+TL +AG SG I + G +L E P
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH--PSYEVTSGTILFKGQDLLELEP 71
Query: 244 Q---RTCAYIS-QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R +++ Q+ ++ E L R L A RR + +
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFL-----------RSALNA---RRSARG----EEP 113
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+D L+ L +LG+D + + + G SGG+KKR +M +
Sbjct: 114 LDLL--------DFLKLLKA-KLALLGMD---EEFLNRSVNEGFSGGEKKRNEILQMALL 161
Query: 360 TANVLYMDEISTGLD 374
+ +DEI +GLD
Sbjct: 162 EPKLAILDEIDSGLD 176
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 3e-08
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 31/181 (17%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
LL +VS PG L+G +GAGK+TL+ +LAG G++ PK RV
Sbjct: 18 LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP--DSGEVTR---PKG----LRV 68
Query: 942 SGYCEQNDIHSPYVTVYESLL--YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM- 998
GY Q P TV + ++ + L ++++ + + L EL++L + +
Sbjct: 69 -GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELD 127
Query: 999 --------------VGLPG----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+G P VS LS R+R+ +A L+ P ++ +DEPT+ LD
Sbjct: 128 GWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLE 187
Query: 1041 A 1041
+
Sbjct: 188 S 188
|
Length = 530 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 3e-08
Identities = 72/250 (28%), Positives = 109/250 (43%), Gaps = 45/250 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL D+S +K + T ++G G+GK+TL L G SG+I G L +
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKD----- 540
Query: 246 TCAYISQHDL-HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
I +H L +E FSG L LL G K + D
Sbjct: 541 ----IDRHTLRQFINYLPQEPYIFSGSILE-----NLLL---------GAKENVSQDEIW 582
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
A +A + D LG T + +E ISGGQK+R+ L+ + VL
Sbjct: 583 AACEIA----EIKDDIENMPLGYQ----TELSEE-GSSISGGQKQRIALARALLTDSKVL 633
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMI-VA-LLQPAPETYDLFDDIILLSEGQI 422
+DE ++ LD+ T +I + ++++ D T+I VA L A ++ D II+L G+I
Sbjct: 634 ILDESTSNLDTITEKKI---VNNLLNLQDKTIIFVAHRLSVAKQS----DKIIVLDHGKI 686
Query: 423 VYQGPRDNVL 432
+ QG D +L
Sbjct: 687 IEQGSHDELL 696
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 3e-08
Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 48/272 (17%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VP 243
++L D+S + +M LLGP G+GKTTL+ +A G + + SG I + G +++
Sbjct: 16 QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIA---GLEHQTSGHIRFHGTDVSRLHAR 72
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
R ++ QH MTV + + F L L RRE+ P A
Sbjct: 73 DRKVGFVFQHYALFRHMTVFDNIAFG------------LTVLPRRER-------PNAAAI 113
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
V T L L++ + D +SGGQK+RV L +
Sbjct: 114 KAKV------TQL----------LEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI 157
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE LD+ ++ ++L+Q+ L T V + E ++ D ++++S+G I
Sbjct: 158 LLLDEPFGALDAQVRKELRRWLRQLHEELKFTS-VFVTHDQEEAMEVADRVVVMSQGNIE 216
Query: 424 YQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455
G D V ++ P + V +F+ EV
Sbjct: 217 QAGTPDQV--------WREPATRFVLEFMGEV 240
|
Length = 353 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 3e-08
Identities = 51/228 (22%), Positives = 89/228 (39%), Gaps = 47/228 (20%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
++L V+ + G + ALMG +G+GK+TL + G EG+I G
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKG---------- 63
Query: 941 VSGYCEQNDIHSPYVTVYESL---LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
DI + E ++ A+ ++ K F L+ +N+
Sbjct: 64 -------EDITD--LPPEERARLGIFLAFQY-PPEIPGVKNADF---------LRYVNE- 103
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
G S ++KR I L+ P + +DEP SGLD A +V + + G+
Sbjct: 104 --------GFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEA 1105
+V+ H + + D + +L GR++ +G +L E
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYD-GRIVKSGDK-----ELALEIEK 197
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 4e-08
Identities = 46/224 (20%), Positives = 98/224 (43%), Gaps = 44/224 (19%)
Query: 873 EGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISG 930
+ ++ L ++ G L A++G G+GK++L+ L G K G + + G
Sbjct: 11 DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKL----SGSVSVPG 66
Query: 931 YPKNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
+ A Y Q P++ T+ E++L+ D + ++V++
Sbjct: 67 ------SIA----YVSQ----EPWIQNGTIRENILF------GKPFD----EERYEKVIK 102
Query: 988 ----LVELKSLND---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+L+ L D + +G G++ LS Q++R+++A + ++ I +D+P S +DA
Sbjct: 103 ACALEPDLEILPDGDLTEIGEKGIN-LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161
Query: 1041 -AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
I + + +T + HQ + + D++++L G
Sbjct: 162 VGRHIFENCILGLLLNNKTRILVTHQ--LQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (135), Expect = 4e-08
Identities = 64/231 (27%), Positives = 109/231 (47%), Gaps = 23/231 (9%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET--FARVSGYC 945
+ G TAL+G +G+GK+TL+ L G + T G + GDI +S K +E + G
Sbjct: 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVV 89
Query: 946 EQNDIHSPYVTVYESLLYS--AWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGL 1001
Q P ++E + A+ + + +K + E +E+V L S L
Sbjct: 90 FQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFEL 145
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061
G Q +R+ IA L P ++ +DEPT+GLD +A +M+ + +G+TVV
Sbjct: 146 SG------GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVL 199
Query: 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP-GVPK 1111
H D+ + D + LL++G + P + + +++ +A GVPK
Sbjct: 200 VTHLMD-DVADYADYVYLLEKGHIISCGTP--SDVFQEVDFLKAHELGVPK 247
|
Length = 288 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-08
Identities = 53/204 (25%), Positives = 100/204 (49%), Gaps = 25/204 (12%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY 931
GE+++++L +S G + A++G SG+GK+TLM++L G ++ G +++G
Sbjct: 17 GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL------GCLDKPTSGTYRVAGQ 70
Query: 932 ---PKNQETFARVS----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
+ + A++ G+ Q ++T +++ A + + ++ K+R
Sbjct: 71 DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPA---VYAGLERKQRL---LR 124
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
EL++ L D + P S LS Q++R++IA L+ +I DEPT LD+ +
Sbjct: 125 AQELLQRLGLEDRVEYQP--SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEE 182
Query: 1045 VMRTVRNTVDTGRTVVCTIHQPSI 1068
VM + D G TV+ H P +
Sbjct: 183 VMAILHQLRDRGHTVIIVTHDPQV 206
|
Length = 648 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 5e-08
Identities = 71/285 (24%), Positives = 113/285 (39%), Gaps = 77/285 (27%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
+ D+S +K LLGP G GKTTL+ +AG SG+I G ++ +
Sbjct: 16 GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITD- 71
Query: 242 VP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
VP +R + Q H MTV E V + L K
Sbjct: 72 VPPEKRPIGMVFQSYALFPH------MTVEEN---------VA--FGL--------KVRK 106
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
EI A ++ L+++GL+ AD +SGGQ++RV
Sbjct: 107 KLKKAEIKARVEE--------------ALELVGLEGFADRKPHQ-----LSGGQQQRVAL 147
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD---- 409
LV VL +DE + LD+ Q+ K LK++ L +T + T+D
Sbjct: 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYV-------THDQEEA 200
Query: 410 --LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ D I ++++G+I G + + ++ P + VADF+
Sbjct: 201 LAMSDRIAVMNDGRIEQVGTPEEI--------YERPATRFVADFI 237
|
Length = 352 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 5e-08
Identities = 62/230 (26%), Positives = 103/230 (44%), Gaps = 50/230 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQH-DLHH 257
L+GP GAGKT+L+ AL G L + S KI G EL E P+ + +++ Q+ L H
Sbjct: 381 LVGPSGAGKTSLLNALLGFL--PYQGSLKIN--GIELRELDPESWRKHLSWVGQNPQLPH 436
Query: 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
G T+R+ + LL PD + +A+ A V
Sbjct: 437 G--TLRDNV--------------LLG-----------NPDASDEQLQQALENAW-----V 464
Query: 318 TDYVLKI-LGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
++++ + GL DT +GD+ G+S GQ +R+ L+ +L +DE + LD+
Sbjct: 465 SEFLPLLPQGL----DTPIGDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519
Query: 377 TTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ + + L M+ L+ + +D I ++ +GQIV QG
Sbjct: 520 SEQLVMQALNAASRRQTTLMVTHQLEDLAQ----WDQIWVMQDGQIVQQG 565
|
Length = 588 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 60/228 (26%), Positives = 97/228 (42%), Gaps = 41/228 (17%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGY-------PKNQE 936
VS PG + ++G SG+GKTTL+ ++GR G + ++ +
Sbjct: 25 VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84
Query: 937 TFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV------------D 983
R G+ QN + V S+ + +R M +
Sbjct: 85 RLLRTEWGFVHQNPRDGLRMQV------------SAGGNIGERLMAIGARHYGNIRAEAQ 132
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ +E VE+ D + LP +QR L IA LV P ++FMDEPT GLD A
Sbjct: 133 DWLEEVEIDL--DRIDDLPRTFSGGMQQR--LQIARNLVTRPRLVFMDEPTGGLDVSVQA 188
Query: 1044 IVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
++ +R V + G VV H ++ A D L+++K+ G+V+ +G
Sbjct: 189 RLLDLLRGLVRELGLAVVIVTHDLAVARLLA-DRLMVMKQ-GQVVESG 234
|
Length = 258 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 6e-08
Identities = 56/235 (23%), Positives = 89/235 (37%), Gaps = 62/235 (26%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FVPQRTCAYIS 251
LGP GAGKTT + L L SG G+++ VPQ
Sbjct: 24 FLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDE- 79
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
++T RE L+ GR G L + E + +
Sbjct: 80 -------DLTGRENLEMMGRLYG----------LPKDEAEERAEE--------------- 107
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+L++ L AD VG SGG ++R+ L+ +VL++DE +T
Sbjct: 108 ---------LLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
GLD T I +++ + VT+++ E L D I ++ G+I+ +G
Sbjct: 154 GLDPRTRRAIWDYIRALKE-EGVTILLT-THYMEEADKLCDRIAIIDHGRIIAEG 206
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 6e-08
Identities = 54/196 (27%), Positives = 81/196 (41%), Gaps = 41/196 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELNEF 241
+L VS + P +LGP G+GK+TL+ LAG L G++T G L++
Sbjct: 349 PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPL---QGEVTLDGVPVSSLDQD 405
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+R + +Q D H + TVRE L R T EL A L R G+
Sbjct: 406 EVRRRVSVCAQ-DAHLFDTTVRENLRL-AR--PDATDEELWAALER----VGLADWLR-- 455
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
L DT++G E +SGG+++R+ L+ A
Sbjct: 456 ------------------------ALPDGLDTVLG-EGGARLSGGERQRLALARALLADA 490
Query: 362 NVLYMDEISTGLDSST 377
+L +DE + LD+ T
Sbjct: 491 PILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 6e-08
Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 32/227 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGYPKNQ--ETFARVSG 943
G + +MG+SG+GK+T + +L AG+ +I+G+ I + E + G
Sbjct: 19 GEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI---FIDGE-NIMKQSPVELREVRRKKIG 74
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
Q P++T+ ++ L ++RK E+++LV L+ P
Sbjct: 75 MVFQQFALFPHMTILQNTSLGPEL---LGWPEQERKEKALELLKLVGLEEYEHRY---P- 127
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCT 1062
LS ++R+ +A L A P I+ MDE S LD + ++ T +T+V
Sbjct: 128 -DELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFI 186
Query: 1063 IHQPSIDIFEAF---DELLLLKRGGRVIYAGP---LGHESHKLIEYF 1103
H D+ EA D ++++K G V P L + +++ +E F
Sbjct: 187 TH----DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEF 229
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 46/192 (23%), Positives = 68/192 (35%), Gaps = 47/192 (24%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--V 242
+ D+S + + GP GAGKTTL+ LAG L D +G++ + G +
Sbjct: 16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPD---AGEVYWQGEPIQNVRES 72
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ Y+ E+T E L F R G G I
Sbjct: 73 YHQALLYLGHQPGIKTELTALENLHFWQRFHGSG-------------------NAATIWE 113
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ V +AG E D VG +S GQ++RV + + A
Sbjct: 114 ALAQVGLAGLE------------------DLPVGQ-----LSAGQQRRVALARLWLSPAP 150
Query: 363 VLYMDEISTGLD 374
+ +DE T LD
Sbjct: 151 LWILDEPFTALD 162
|
Length = 209 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 7e-08
Identities = 57/209 (27%), Positives = 93/209 (44%), Gaps = 26/209 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDIKISGYPKNQETF 938
L V+ + G +L+G SG GK+TL+++++G + T G +EG P F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
QN P++TV E+ + A R+ D+ +R+ V+E + LV L D
Sbjct: 61 --------QNYSLLPWLTVREN-IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKR 111
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1057
G LS ++R+ IA L P ++ +DEP LDA + + +
Sbjct: 112 PG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRV 166
Query: 1058 TVVCTIHQPSIDIFEAF---DELLLLKRG 1083
TV+ H D+ EA D +++L G
Sbjct: 167 TVLMVTH----DVDEALLLSDRVVMLTNG 191
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 24/209 (11%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--Y 921
M E+K G ++L+++S R G A+ G SG GK+TL+ ++A T G
Sbjct: 2 MLLELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 922 IEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMF 981
EG+ +S K + +VS YC Q TV ++L++ +R R
Sbjct: 62 FEGE-DVSTL-KPEAYRQQVS-YCAQTPALFGD-TVEDNLIFPWQIR----NRRPDRAAA 113
Query: 982 VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
+D L+ +L DS++ ++ LS +++R+ + L P I+ +DE TS LD
Sbjct: 114 LD----LLARFALPDSILTKN-ITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 1042 A----AIVMRTVRNTVDTGRTVVCTIHQP 1066
++ R VR + V+ H
Sbjct: 169 KRNIEEMIHRYVR---EQNVAVLWITHDK 194
|
Length = 223 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 7e-08
Identities = 52/221 (23%), Positives = 92/221 (41%), Gaps = 45/221 (20%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+L +VS + G ++G +GAGK+TL +LA + EG I+I G
Sbjct: 22 PVLKNVSFKVKAGEKIGIVGRTGAGKSTL--ILALFRFLEAEEGKIEIDG---------- 69
Query: 941 VSGYCEQNDIHSPYVTVYESL--------LYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ P + SL L+S +R + D + +E+ + +
Sbjct: 70 ------IDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD---EEIYGALRVS 120
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
G LS QR+ L +A L+ P ++ +DE T+ +D A++ +T+R
Sbjct: 121 E---------GGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREE 171
Query: 1053 VDTGRTVVCTIH--QPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T T++ H + ID +D++L++ G Y P
Sbjct: 172 F-TNSTILTIAHRLRTIID----YDKILVMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 51/173 (29%), Positives = 79/173 (45%), Gaps = 16/173 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA- 939
++L V+ +TALMG SG+GK+TL+ V R Y E + Y Q+ F
Sbjct: 17 EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFKM 75
Query: 940 -------RVSGYCE-QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKR-KMFVDEVMELVE 990
RV + N I P ++++E++ L+L+ V +KK + V +E +
Sbjct: 76 DVIELRRRVQMVFQIPNPI--PNLSIFENVALG--LKLNRLVKSKKELQERVRWALEKAQ 131
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
L + P LS Q++RL IA L P ++ DEPT+ LD A
Sbjct: 132 LWDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTA 183
|
Length = 250 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 7e-08
Identities = 65/249 (26%), Positives = 106/249 (42%), Gaps = 30/249 (12%)
Query: 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912
+S+ F+N+ Y M+ +G L ++S G AL+G +G+GK+TLM
Sbjct: 1 MSIKFENVDYIYSPGTPMEKKG--------LDNISFELEEGSFVALVGHTGSGKSTLMQH 52
Query: 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY---ESLLYSAWLRL 969
G I I+GY ET G + V+ E+ L+ +
Sbjct: 53 FNALLKPS--SGTITIAGYHITPET-----GNKNLKKLRKKVSLVFQFPEAQLFEN--TV 103
Query: 970 SSDVDTKKRKM-FVDEVMELVELKSLNDSMVGLP------GVSGLSTEQRKRLTIAVELV 1022
DV+ + F ++ + LK L VGL LS Q +R+ IA +
Sbjct: 104 LKDVEFGPKNFGFSEDEAKEKALKWLKK--VGLSEDLISKSPFELSGGQMRRVAIAGVMA 161
Query: 1023 ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082
P I+ +DEP +GLD +M+ ++ G TV+ H D+ E D++L+L+
Sbjct: 162 YEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH 220
Query: 1083 GGRVIYAGP 1091
G + +A P
Sbjct: 221 GKLIKHASP 229
|
Length = 287 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 9e-08
Identities = 55/188 (29%), Positives = 89/188 (47%), Gaps = 42/188 (22%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG--- 930
Q L +S +TA +G SG GK+TL+ D++ + IEG+I++ G
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR----IEGEIRLDGQNI 94
Query: 931 YPKNQ---ETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
Y K E RV G Q +P+ ++YE+++Y LRL R++ +DE +
Sbjct: 95 YDKKVDVAELRRRV-GMVFQRP--NPFPKSIYENVVYG--LRLQG---INNRRV-LDEAV 145
Query: 987 ELV--------ELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
E E+K L+++ GL G Q++RL IA + P ++ +DEPTS L
Sbjct: 146 ERSLRGAALWDEVKDRLHENAFGLSG------GQQQRLVIARAIAIEPEVLLLDEPTSAL 199
Query: 1038 DARAAAIV 1045
D + +
Sbjct: 200 DPISTLKI 207
|
Length = 272 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 64/270 (23%), Positives = 109/270 (40%), Gaps = 68/270 (25%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITY 233
PS+ V ILK +S + P + L+G G GK+T++ L R SG+I
Sbjct: 11 PSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLL-------ERFYDPTSGEILL 62
Query: 234 CGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
G ++ + + +SQ + + T+ E + + G E+ K
Sbjct: 63 DGVDIRDLNLRWLRSQIGLVSQ-EPVLFDGTIAENIRY-------GKPDATDEEVEEAAK 114
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQK 348
+A I F I+ L DT+VG+ RG +SGGQK
Sbjct: 115 KA------NIHDF--------------------IMSLPDGYDTLVGE---RGSQLSGGQK 145
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQP 403
+R+ L+ +L +DE ++ LD+ + + + L + + T IV + ++
Sbjct: 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA--MKGRTTIVIAHRLSTIRN 203
Query: 404 APETYDLFDDIILLSEGQIVYQGPRDNVLE 433
A D I +L GQ+V QG D ++
Sbjct: 204 A-------DLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 62/232 (26%), Positives = 105/232 (45%), Gaps = 37/232 (15%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTL-------MDVLAGRKTGGYIEGDIKISGYPKN 934
+L V +PG + G +G+GK++L +D+ G+ I+G I IS P
Sbjct: 36 VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV---IDG-IDISKLPL- 90
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+R+S + + + +L+S +R + D + K + E +E+ +LK++
Sbjct: 91 HTLRSRLS------------IILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNM 138
Query: 995 NDSMVGLPGVSGLSTE--------QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
S+ G G+ + TE QR+ +A V SI+ MDE T+ +D I+
Sbjct: 139 VKSLPG--GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQ 196
Query: 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHK 1098
+ V T RTVV H+ S I +A D +L+L RG V P + +
Sbjct: 197 KVVM-TAFADRTVVTIAHRVS-TILDA-DLVLVLSRGILVECDTPENLLAQE 245
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 58/228 (25%), Positives = 99/228 (43%), Gaps = 44/228 (19%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---------K 933
L S+S V PG AL+G SG+GK+TL++++ + G I + G+ +
Sbjct: 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIP--RFYEPDSGQILLDGHDLADYTLASLR 405
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
Q A VS D+ T+ ++ Y + D + ++ + +
Sbjct: 406 RQ--VALVS-----QDVVLFNDTIANNIAYGR----TEQADRAE----IERALAAAYAQD 450
Query: 994 LNDSM-------VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
D + +G GV LS QR+RL IA L+ + I+ +DE TS LD +
Sbjct: 451 FVDKLPLGLDTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESE---- 505
Query: 1047 RTVRNTVD---TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
R V+ ++ GRT + H+ S E D ++++ GR++ G
Sbjct: 506 RLVQAALERLMQGRTTLVIAHRLS--TIEKADRIVVMDD-GRIVERGT 550
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 1e-07
Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 30/183 (16%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 930
L +S + A +G SG GK+T + D++ + +EG+I+I G
Sbjct: 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR----LEGEIRIDGRN 71
Query: 931 -YPKNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
Y K + + G Q P +++E++ Y LR++ D + V+E ++
Sbjct: 72 IYDKGVQVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRVNGVKDNAFIRQRVEETLK 128
Query: 988 LVEL-----KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
L L +S L G Q++RL IA + +PS++ MDEP S LD +
Sbjct: 129 GAALWDEVKDKLKESAFALSG------GQQQRLCIARAMAVSPSVLLMDEPASALDPIST 182
Query: 1043 AIV 1045
A V
Sbjct: 183 AKV 185
|
Length = 250 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 57/234 (24%), Positives = 99/234 (42%), Gaps = 24/234 (10%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------YPK 933
Q L ++ G L+G SGAGK++L+ VL + G + I+G P
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPR--SGTLNIAGNHFDFSKTPS 73
Query: 934 NQETFA--RVSGYCEQNDIHSPYVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELV 989
++ R G Q P++TV E+L+ A R+ S R ++++ +
Sbjct: 74 DKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-EAPCRVLGLSKDQALARAE---KLLKRL 129
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
LK D P LS Q++R+ IA L+ P ++ DEPT+ LD A ++ +
Sbjct: 130 RLKPYADR---YP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYF 1103
+ +TG T V H+ +++ ++ G ++ G + E F
Sbjct: 185 KELAETGITQVIVTHE--VEVARKTASRVVYMENGHIVEQGDASCFTEPQTEAF 236
|
Length = 242 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 57/222 (25%), Positives = 91/222 (40%), Gaps = 45/222 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
V L DVS ++ L GP GAGKTTL+ KL G
Sbjct: 13 GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLL-----KL-----------LYGALT--- 53
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTR-YELLAELSRREKQAGIKPDPEI 300
P R I+ D++ + R+ L R +GV + + LL + + E A
Sbjct: 54 -PSRGQVRIAGEDVNR--LRGRQ-LPLLRRRIGVVFQDFRLLPDRTVYENVA-------- 101
Query: 301 DAFMKAVAVAGQETSLVTDYV---LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ V G++ + V L+ +GL+ AD +SGG+++RV +
Sbjct: 102 ----LPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQ-----LSGGEQQRVAIARAI 152
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
V + +L DE + LD + +I LK+ ++ T+IVA
Sbjct: 153 VNSPPLLLADEPTGNLDPDLSERILDLLKR-LNKRGTTVIVA 193
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 59/272 (21%), Positives = 95/272 (34%), Gaps = 60/272 (22%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K + L +VS ++ ++G G+GK+TL LAG SG I G
Sbjct: 14 GGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKP 70
Query: 238 LNEFVPQRTCA----YISQHDLH--HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L + + Q + TV L R G+ + +AEL Q
Sbjct: 71 LAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELL---DQ 127
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
G+ P S + ++ SGGQ++R+
Sbjct: 128 VGLPP------------------SFLDRRPHEL-------------------SGGQRQRI 150
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPE 406
L+ +L +DE ++ LD S QI L ++ +T + AL+
Sbjct: 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALV----- 205
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNVLEFFEHM 438
+ D I ++ GQIV GP + +L H
Sbjct: 206 -EHMCDRIAVMDNGQIVEIGPTEELLSHPSHP 236
|
Length = 252 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 62/236 (26%), Positives = 94/236 (39%), Gaps = 49/236 (20%)
Query: 202 LLGPPGAGKTTLM---LALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258
LLGP GAGKTTL+ L L ++ +G G +VPQR H+
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQR-------HEFAWD 63
Query: 259 -EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLV 317
++V T+ SGR +G RR A AV A
Sbjct: 64 FPISVAHTV-MSGRTGHIG--------WLRRPCVAD----------FAAVRDA------- 97
Query: 318 TDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSST 377
L+ +GL AD VG+ +SGGQ++RV L +VL +DE TGLD T
Sbjct: 98 ----LRRVGLTELADRPVGE-----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT 148
Query: 378 TFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+ + ++ T I+ + D ++LL+ G+++ G + +
Sbjct: 149 QELLTELFIELAG--AGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 56/264 (21%), Positives = 111/264 (42%), Gaps = 71/264 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--R----ASGKITYCGHELN 239
+L+D+S + L+GP G+GK+TL+ +L R SG+I GH++
Sbjct: 17 VLRDISLDIPAGETVALVGPSGSGKSTLV---------NLIPRFYDVDSGRILIDGHDVR 67
Query: 240 EFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
++ R +SQ + F+ + E A +P
Sbjct: 68 DYTLASLRRQIGLVSQ-----------DVFLFND---------------TVAENIAYGRP 101
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTG 354
+ +A + ++ I+ L DT++G+ RG+ SGGQ++R+
Sbjct: 102 GATREEVEEAA-----RAANAHEF---IMELPEGYDTVIGE---RGVKLSGGQRQRIAIA 150
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYD 409
L+ +L +DE ++ LD+ + + L++++ + T V + ++ A
Sbjct: 151 RALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRLSTIENA----- 203
Query: 410 LFDDIILLSEGQIVYQGPRDNVLE 433
D I++L +G+IV +G + +L
Sbjct: 204 --DRIVVLEDGKIVERGTHEELLA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 64/277 (23%), Positives = 105/277 (37%), Gaps = 74/277 (26%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
V LKDVS V + ++G GAGK+TL+ + G + SG + G +
Sbjct: 12 GDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGL---ERPTSGSVLVDGTD 68
Query: 238 LNEFVP------QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L +R I QH + LL+ + E
Sbjct: 69 LTLLSGKELRKARRRIGMIFQH-------------------------FNLLSSRTVFENV 103
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG-----ISGG 346
A + +AG + + + VL++L L VG E + +SGG
Sbjct: 104 A------------LPLEIAGVPKAEIEERVLELLEL-------VGLEDKADAYPAQLSGG 144
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
QK+RV L VL DE ++ LD TT I L+ + L +T+++
Sbjct: 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLI------- 197
Query: 407 TY------DLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+ + D + ++ +G++V +G V E F +
Sbjct: 198 THEMEVVKRICDRVAVMEKGEVVEEGT---VEEVFAN 231
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 52/191 (27%), Positives = 76/191 (39%), Gaps = 23/191 (12%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L++VS + P L+G GAGK+TL+ LAG+L D SG++T
Sbjct: 17 PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPKGL------- 66
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Y+SQ E TV + + G G ELLAEL D +
Sbjct: 67 -RVGYLSQEPPLDPEKTVLDYV-----IEGFGELRELLAELEEAYALLADPDDELLAELE 120
Query: 305 KAVAVAGQETS-LVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+ T + L LG D V +SGG ++RV L+ ++
Sbjct: 121 ALLEELDGWTLEARAEEALLGLGFPD-EDRPVSS-----LSGGWRRRVALARALLEEPDL 174
Query: 364 LYMDEISTGLD 374
L +DE + LD
Sbjct: 175 LLLDEPTNHLD 185
|
Length = 530 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 61/226 (26%), Positives = 100/226 (44%), Gaps = 30/226 (13%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPK 933
L +VS G A++G +G+GK+T+ +L G + G+IKI G
Sbjct: 18 PNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ----SGEIKIDGITI 73
Query: 934 NQETFARVS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
++E + G QN D TV + + + + V KK K +D++ + V
Sbjct: 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKV 130
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV---M 1046
++ D P LS Q++R+ IA L NP II DE TS LD + + M
Sbjct: 131 GMEDYLDKE---P--QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIM 185
Query: 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGRVIYAG 1090
+R T +T++ H D+ EA D++++ G++I G
Sbjct: 186 VDLRKTRK--KTLISITH----DMDEAILADKVIVFS-EGKLIAQG 224
|
Length = 271 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-07
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGR------KTGGYIEGDIKISGYPKN--QETFAR 940
V R G + L+G +G GK+T + +LAG+ K + D + + + Q F +
Sbjct: 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81
Query: 941 VSGYCEQNDIHSP-YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
+ + I P YV + + L D +R DE+++ +EL+ + D
Sbjct: 82 LLEG-DVKVIVKPQYVDLIPKAVKGKVGELLKKKD--ERGKL-DELVDQLELRHVLDR-- 135
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
+ LS + +R+ IA L + F DEP+S LD + R +R + V
Sbjct: 136 ---NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYV 192
Query: 1060 VCTIHQPSI 1068
+ H ++
Sbjct: 193 LVVEHDLAV 201
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 2e-07
Identities = 54/190 (28%), Positives = 90/190 (47%), Gaps = 40/190 (21%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKNQETFA--RVS 942
+TAL+G SG GK+T + D++ G K IEG++ G Y N + R
Sbjct: 35 ITALIGPSGCGKSTFLRTLNRMNDLVEGIK----IEGNVIYEGKNIYSNNFDILELRRKI 90
Query: 943 GYCEQNDIHSPYV-TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------- 993
G Q +P++ ++Y+++ Y + + D K+K+ DE++E KS
Sbjct: 91 GMVFQTP--NPFLMSIYDNISYGPKIHGTKD----KKKL--DEIVEQSLKKSALWNEVKD 142
Query: 994 -LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
LN + + L G Q++RL IA L P++I MDEPTS LD + + + N
Sbjct: 143 KLNTNALSLSG------GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL 196
Query: 1053 VDTGRTVVCT 1062
++ ++ T
Sbjct: 197 KESYTIIIVT 206
|
Length = 254 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-07
Identities = 79/308 (25%), Positives = 130/308 (42%), Gaps = 48/308 (15%)
Query: 772 WIGV-----GALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQM 826
W+G G ++ + L F+F A + S T+ E GE QRA+G A +
Sbjct: 261 WVGAHDVIAGKMSAGT-LGQFVFYAVMV-----AGSIGTLSEVWGELQRAAG--AAERLI 312
Query: 827 AVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVG---EDRLQL- 882
+ + + A P P +L V + E++ E V R
Sbjct: 313 ELLQAEPDIKA-----------PAHPKTLP-------VPLRGEIEFEQVNFAYPARPDQP 354
Query: 883 -LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP----KNQET 937
L ++ RPG AL+G SGAGK+TL +L + G I + G E
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLL--LRFYDPQSGRILLDGVDLRQLDPAEL 412
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
AR++ + + + +V E++ Y +V+ R E + L D+
Sbjct: 413 RARMALVPQDPVLFA--ASVMENIRYGRPDATDEEVEAAARAAHAHEFIS--ALPEGYDT 468
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
+G GV+ LS QR+R+ IA ++ + I+ +DE TS LDA + +V + + T+ GR
Sbjct: 469 YLGERGVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQAL-ETLMKGR 526
Query: 1058 TVVCTIHQ 1065
T + H+
Sbjct: 527 TTLIIAHR 534
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 18/169 (10%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP------ 932
+L++VS + G AL+G SG GK+TL +L G ++ +G++ G P
Sbjct: 24 HQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS--QGNVSWRGEPLAKLNR 81
Query: 933 KNQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
++ F R Q+ I + P TV E + LR +D +R E++ V+
Sbjct: 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVD 139
Query: 991 LK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L S+ D P LS Q +R+ +A L P ++ +DE S LD
Sbjct: 140 LDDSVLDK---RPP--QLSGGQLQRVCLARALAVEPKLLILDEAVSNLD 183
|
Length = 268 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.5 bits (128), Expect = 2e-07
Identities = 50/180 (27%), Positives = 85/180 (47%), Gaps = 17/180 (9%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---------YPKNQETFARVSGYCEQ 947
+MG SG+GK+TL+ VL R Y + IK+ G + + + G Q
Sbjct: 40 GIMGPSGSGKSTLLKVL-NRLIEIY-DSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQ 97
Query: 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMVGLPGVSG 1006
P++++Y+++ Y L+ + ++ K V+E + V L K + D + P S
Sbjct: 98 QPNPFPHLSIYDNIAYP--LKSHGIKEKREIKKIVEECLRKVGLWKEVYDRL-NSPA-SQ 153
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS Q++RLTIA L P ++ MDEPTS +D + + + + + +V H P
Sbjct: 154 LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLI-TELKNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 3e-07
Identities = 51/196 (26%), Positives = 90/196 (45%), Gaps = 31/196 (15%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKN 934
DRL + F +TA +G +GAGKTT + +L G +G + G I N
Sbjct: 947 DRLNI------TFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIE---TN 997
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS--DVDTKKRKMFVDEVMELVELK 992
+ + G C Q++I ++TV E +L+ A L+ S + + M D + +
Sbjct: 998 LDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNE 1057
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA---RAAAIVMRTV 1049
D LS +++L++A+ V + ++ +DEPTSG+D R+ ++
Sbjct: 1058 EAQD----------LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107
Query: 1050 RNTVDTGRTVVCTIHQ 1065
R +GRT++ + H
Sbjct: 1108 R----SGRTIIMSTHH 1119
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 64/274 (23%), Positives = 102/274 (37%), Gaps = 84/274 (30%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K++ + ++S V + + LLGP GAGK+TL+ + G L SG+I + GH
Sbjct: 11 GKQTA--VNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPW- 64
Query: 240 EFVPQRTCAYISQHDLH-----------HGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288
++ DLH + +T RE L LG+
Sbjct: 65 -----------TRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGL------------- 100
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
PD ID VL I+ L S G K
Sbjct: 101 -------PDSRIDE------------------VLNIVDLTNTGKKKAKQ-----FSLGMK 130
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ----ICKFLKQMVHILDVTMIVALLQPA 404
+R+ L+ +L +DE + GLD + I F +Q + ++ + I++
Sbjct: 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS----- 185
Query: 405 PETYDLFDDIILLSEGQIVYQG---PRDNVLEFF 435
E L D I ++SEG + YQG +N+ + F
Sbjct: 186 -EVQQLADHIGIISEGVLGYQGKINKSENLEKLF 218
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-07
Identities = 65/251 (25%), Positives = 96/251 (38%), Gaps = 49/251 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V LK V+ V P + LLG GAGK+TLM L+G G IT N+
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP---TKGTITINNINYNKLDH 74
Query: 244 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
Q I Q E+TV E L + GR L T+ K G+
Sbjct: 75 KLAAQLGIGIIYQELSVIDELTVLENL-YIGRHL---TK-----------KVCGV---NI 116
Query: 300 ID-AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
ID M+ A +L +GL + D V + +S K+ + + L+
Sbjct: 117 IDWREMRVRA----------AMMLLRVGLKVDLDEKVAN-----LSISHKQMLEIAKTLM 161
Query: 359 GTANVLYMDEISTGLDSSTT---FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
A V+ MDE ++ L + F I L++ + T IV + E + D
Sbjct: 162 LDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-----EGTAIVYISHKLAEIRRICDRYT 216
Query: 416 LLSEGQIVYQG 426
++ +G V G
Sbjct: 217 VMKDGSSVCSG 227
|
Length = 510 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 3e-07
Identities = 56/222 (25%), Positives = 91/222 (40%), Gaps = 78/222 (35%)
Query: 864 VDMPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DV 912
+ P +M+ G+ G+ Q LH +S F +TAL+G SG GK+T + D+
Sbjct: 1 MASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDL 58
Query: 913 LAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYV----------------- 955
+ G + +EG+I + G +I+ P+V
Sbjct: 59 IPGAR----VEGEILLDG-----------------ENIYDPHVDVVELRRRVGMVFQKPN 97
Query: 956 ----TVYESLLYSAWLR---------LSSDVDTK-KRKMFVDEVMELVELKSLNDSMVGL 1001
+++E++ Y LR L+ V+ + DEV + L++S +GL
Sbjct: 98 PFPKSIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDEVKD-----RLHESALGL 150
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
G Q++RL IA L P ++ MDEP S LD A
Sbjct: 151 SG------GQQQRLCIARALAVEPEVLLMDEPASALDPIATQ 186
|
Length = 253 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-07
Identities = 64/224 (28%), Positives = 102/224 (45%), Gaps = 35/224 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
Q + VS + G A++G +GAGKTTL+++L ++ G I I G N T
Sbjct: 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLL--QRVYDPTVGQILIDGIDINTVT--- 403
Query: 941 VSGYCEQNDIHSPYVTVYESL-LYSAWLRLSSDVDTKKRKMFVDEVMELVE--------L 991
+ + TV++ L++ +R ++ + +EV E + L
Sbjct: 404 ------RESLRKSIATVFQDAGLFNRSIR--ENIRLGREGATDEEVYEAAKAAAAHDFIL 455
Query: 992 KSLN--DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
K N D++VG G + LS +R+RL IA ++ N I+ +DE TS LD A V
Sbjct: 456 KRSNGYDTLVGERG-NRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEA----RV 510
Query: 1050 RNTVDT---GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+N +D RT H+ S + A +L+L GR+I G
Sbjct: 511 KNAIDALRKNRTTFIIAHRLST-VRNA--DLVLFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 51/217 (23%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 176 LVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235
V + + ILK V +VK ++GP G+GK+TL+ LA G D +SG++ G
Sbjct: 15 TVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLA---GLDDPSSGEVRLLG 71
Query: 236 HELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQA-- 292
L+ ++ R +G V + L+ L+ E A
Sbjct: 72 QPLH-------------------KLDEDARAALRARHVGFVFQSFHLIPNLTALENVALP 112
Query: 293 -GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR---RGISGGQK 348
++ + D+ A A +L+ +GL G + +SGG++
Sbjct: 113 LELRGESSADSRAGAKA------------LLEAVGL--------GKRLTHYPAQLSGGEQ 152
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFL 385
+RV G +VL+ DE + LD +T +I L
Sbjct: 153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
|
Length = 228 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-07
Identities = 48/174 (27%), Positives = 86/174 (49%), Gaps = 27/174 (15%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET 937
R Q+L+ +S G + AL+G SG+GKTTL+ ++AG + G I+ G
Sbjct: 13 GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH--QTSGHIRFHG-----TD 65
Query: 938 FARVS------GYCEQNDIHSPYVTVYESLLYSAWL-----RLSSDVDTKKRKMFVDEVM 986
+R+ G+ Q+ ++TV++++ + + R ++ K V +++
Sbjct: 66 VSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAK----VTQLL 121
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
E+V+L L D P + LS Q++R+ +A L P I+ +DEP LDA+
Sbjct: 122 EMVQLAHLADR---YP--AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQ 170
|
Length = 353 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 4e-07
Identities = 60/207 (28%), Positives = 98/207 (47%), Gaps = 41/207 (19%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI-- 950
G + L+G SG GKTT++ ++AG + EG I I G E S +Q DI
Sbjct: 32 GTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDG-----EDVTHRS--IQQRDICM 82
Query: 951 --HS----PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGV 1004
S P++++ E++ Y L++ V ++RK V E +ELV+L D V
Sbjct: 83 VFQSYALFPHMSLGENVGYG--LKMLG-VPKEERKQRVKEALELVDLAGFEDRYV----- 134
Query: 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-----DTGRTV 1059
+S Q++R+ +A L+ P ++ DEP S LDA + R++R + T
Sbjct: 135 DQISGGQQQRVALARALILKPKVLLFDEPLSNLDAN----LRRSMREKIRELQQQFNITS 190
Query: 1060 VCTIHQPSIDIFEAF---DELLLLKRG 1083
+ H S EAF D ++++ +G
Sbjct: 191 LYVTHDQS----EAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 4e-07
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS +R+ + IA L N ++ +DEPT+ L + + +R G V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142
Query: 1067 SIDIFEAFDELLLLKRGGRVI 1087
++FE D + +L R GRV+
Sbjct: 143 D-EVFEIADRVTVL-RDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 4e-07
Identities = 57/226 (25%), Positives = 97/226 (42%), Gaps = 40/226 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQ---- 935
++ S G + +MG+SG+GK+TL+ +L T G I D K I+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 936 --ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ + V Q+ P+ TV E++ + L + V +R+ E +ELV L+
Sbjct: 104 RRKKISMVF----QSFALLPHRTVLENVAFG--LEVQG-VPKAEREERALEALELVGLEG 156
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT----- 1048
D LS ++R+ +A L +P I+ MDE S LD ++RT
Sbjct: 157 YADKYPN-----ELSGGMQQRVGLARALANDPDILLMDEAFSALDP-----LIRTEMQDE 206
Query: 1049 -VRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAG 1090
+ +T+V H D+ EA D + ++K G ++ G
Sbjct: 207 LLELQAKLKKTIVFITH----DLDEALRIGDRIAIMK-DGEIVQVG 247
|
Length = 386 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 19/158 (12%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKNQETFARVS-G 943
+TAL+G SG GK+TL+ D++ G K I G + + G Y R+ G
Sbjct: 31 VTALIGPSGCGKSTLLRCLNRMNDLIEGVK----ITGKLTMDGEDIYGNIDVADLRIKVG 86
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
Q P +++YE++ Y LR D K V+ + L +
Sbjct: 87 MVFQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHA 143
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
GLS Q++RL IA + P +I MDEPTS LD A
Sbjct: 144 F-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIA 180
|
Length = 249 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 55/222 (24%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L ++ + L+GP GAGK+TL+ + ++L SG I G ++++ R
Sbjct: 17 LDGINISISAGEFVFLVGPSGAGKSTLLKLI---YKEELPTSGTIRVNGQDVSDL-RGRA 72
Query: 247 CAYISQH------D---LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
Y+ + D L V E + F+ GV R E+ +R A
Sbjct: 73 IPYLRRKIGVVFQDFRLLPD--RNVYENVAFALEVTGVPPR-----EIRKRVPAA----- 120
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
L+++GL + +SGG+++RV +
Sbjct: 121 ------------------------LELVGLSHKHRALPA-----ELSGGEQQRVAIARAI 151
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA 399
V + +L DE + LD TT++I LK+ ++ T++VA
Sbjct: 152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 55/268 (20%), Positives = 100/268 (37%), Gaps = 79/268 (29%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNE-- 240
LKD+S + +T L+GP G GK+TL+ L L G++ G ++ +
Sbjct: 14 HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLD 73
Query: 241 -----------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRRE 289
V Q+ + ++ + + G+
Sbjct: 74 VDVLELRRRVGMVFQKPNPF---------PGSIYDNVA-----YGL-------------- 105
Query: 290 KQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR-----GIS 344
+ GIK E+D V A L+ L DE++ G+S
Sbjct: 106 RLHGIKLKEELDE---RVEEA-----------LRKAALW--------DEVKDRLHALGLS 143
Query: 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---LL 401
GGQ++R+ L VL +DE ++ LD +T +I + + ++ + T+++ +
Sbjct: 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK--EYTIVIVTHNMQ 201
Query: 402 QPAPETYDLFDDIILLSEGQIVYQGPRD 429
Q A + D L G++V GP +
Sbjct: 202 QAA----RVADRTAFLLNGRLVEFGPTE 225
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 5e-07
Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 63/268 (23%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY-----CGHEL---- 238
+DVS + P + ++G G+GK+TL+ LAG+L D G TY EL
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD---HGTATYIMRSGAELELYQLS 76
Query: 239 ---NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK 295
+ + ++ Q+ M V + R + +G R+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARH---------------- 120
Query: 296 PDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGE 355
+ A A D++ ++ +I + D++ R SGG ++R+
Sbjct: 121 -------YGNIRATAQ-------DWLEEV---EIDPTRI--DDLPRAFSGGMQQRLQIAR 161
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------ 409
LV +++MDE + GLD S ++ L+ +V L + +I+ T+D
Sbjct: 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIV-------THDLGVARL 214
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEH 437
L ++++ +G++V G D VL+ +H
Sbjct: 215 LAQRLLVMQQGRVVESGLTDQVLDDPQH 242
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 5e-07
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 17/213 (7%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETF 938
L + RPG L G +GAGK+TLM +L+G G +G+I SG P ++T
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTE 76
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM----ELVELKSL 994
Q P ++V E++ L +++ +M + + L+ L
Sbjct: 77 RAGIVIIHQELTLVPELSVAENIF------LGNEITLPGGRMAYNAMYLRAKNLLRELQL 130
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD 1054
+ V P V Q++ + IA L ++ +DEP+S L + I++ +R+
Sbjct: 131 DADNVTRP-VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDL-- 187
Query: 1055 TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
V C ++ +A + + + R G+ +
Sbjct: 188 KAHGVACVYISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 5e-07
Identities = 68/300 (22%), Positives = 113/300 (37%), Gaps = 39/300 (13%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR-ASGKITY-------CG 235
+LK++S ++ + +LG GAGK+ LM L G SG+I Y CG
Sbjct: 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGM--DQYEPTSGRIIYHVALCEKCG 70
Query: 236 H-ELNEFV--PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
+ E V P C G E +DF + R + + A
Sbjct: 71 YVERPSKVGEPCPVC----------GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-----RGISGGQ 347
D +D ++A+ G E + ++ MV R R +SGG+
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLI-------EMVQLSHRITHIARDLSGGE 173
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
K+RV L + DE + LD T + L++ V ++M++ PE
Sbjct: 174 KQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLT--SHWPEV 231
Query: 408 Y-DLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWF 466
DL D I L G+I +G D V+ F G E++ + + + ++ + +
Sbjct: 232 IEDLSDKAIWLENGEIKEEGTPDEVVAVFME-GVSEVEKECEVEVGEPIIKVRNVSKRYI 290
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 11/84 (13%)
Query: 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDI 1070
++RL IA LV +P ++FMDEPT GLD A ++ +R V + G VV H D+
Sbjct: 157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH----DL 212
Query: 1071 FEAFDELL----LLKRGGRVIYAG 1090
A LL L+ + GRV+ +G
Sbjct: 213 --AVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 5e-07
Identities = 48/189 (25%), Positives = 92/189 (48%), Gaps = 12/189 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQET 937
Q+LH++ G + ++G SG+GK+TL+ + L +G I +K++ ++
Sbjct: 15 QVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERL 74
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ +G Q P++T E++++ +R +S + +K+ EL+ L +
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQ------ARELLAKVGLAE 128
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P S LS Q++R+ IA L P ++ DEPTS LD V++ +++ + G
Sbjct: 129 RAHHYP--SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEG 186
Query: 1057 RTVVCTIHQ 1065
T+V H+
Sbjct: 187 MTMVIVTHE 195
|
Length = 240 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 5e-07
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 20/181 (11%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--NQETF 938
+ LH +S F LTAL+G SG GK+T + L + IE +IKI+G K Q +
Sbjct: 18 EALHGISLDFEEKELTALIGPSGCGKSTFLRCL--NRMNDDIE-NIKITGEIKFEGQNIY 74
Query: 939 A---------RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV 989
+ G Q P+ +VY+++ Y L+++ D + V+E ++
Sbjct: 75 GSKMDLVELRKEVGMVFQQPTPFPF-SVYDNVAYG--LKIAGVKDKELIDQRVEESLKQA 131
Query: 990 EL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ K D++ S Q++R+ IA L P ++ +DEPTS LD +++ + T
Sbjct: 132 AIWKETKDNLD--RNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEET 189
Query: 1049 V 1049
+
Sbjct: 190 L 190
|
Length = 251 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
L +VS + G + AL+G +G+GK+TL+ +AG + T G I D K +E
Sbjct: 13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELR 72
Query: 939 ARVSGYCEQ 947
R+ GY Q
Sbjct: 73 RRI-GYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 6e-07
Identities = 58/248 (23%), Positives = 102/248 (41%), Gaps = 51/248 (20%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
V L D+S V+ + LLGP GAGKTT + + G + D SG++ + G L +
Sbjct: 11 GRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPL-DI 66
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ Y+ + + +M V + L + + L L + E + I
Sbjct: 67 AARNRIGYLPEERGLYPKMKVIDQLVYLAQ----------LKGLKKEEARRRI------- 109
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
D L+ L L A+ V +E+ S G +++V ++
Sbjct: 110 -----------------DEWLERLELSEYANKRV-EEL----SKGNQQKVQFIAAVIHDP 147
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHIL---DVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE +GLD + LK ++ L T+I++ Q +L D ++LL+
Sbjct: 148 ELLILDEPFSGLDPVNV----ELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLN 202
Query: 419 EGQIVYQG 426
+G+ V G
Sbjct: 203 KGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 6e-07
Identities = 60/249 (24%), Positives = 96/249 (38%), Gaps = 45/249 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH-----ELN 239
+IL D+S V P ++GP GAGKTTL+ L G+ +SG +T G E
Sbjct: 45 KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP---SSGDVTLLGRRFGKGETI 101
Query: 240 EFVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ ++ +S H+ TVR+ + SG Y+ +
Sbjct: 102 FEL-RKRIGLVSSELHERFRVRETVRDVV-LSGF-FASIGIYQEDLTAEDLAAAQWL--- 155
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
L++LG AD G +S G+++RV L
Sbjct: 156 ------------------------LELLGAKHLADRPFGS-----LSQGEQRRVLIARAL 186
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
V +L +DE + GLD Q+ L+++ ++ + A E F +LL
Sbjct: 187 VKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLL 246
Query: 418 SEGQIVYQG 426
EG++V QG
Sbjct: 247 KEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-07
Identities = 62/266 (23%), Positives = 112/266 (42%), Gaps = 49/266 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
ILK V+ VK + ++GP G+GK+TL + G ++ G+I + G ++ E P
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEV-TEGEILFDGEDILELSPD 76
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+R A I + + ++ GV L A ++ R GI PE
Sbjct: 77 ERARAGIF--------LAFQYPVEIP----GVTNSDFLRAAMNARRGARGI--LPEFIKE 122
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+K A ++LGLD + + + G SGG+KKR ++L+ +
Sbjct: 123 LKEKA--------------ELLGLD---EEFLERYVNEGFSGGEKKRNEILQLLLLEPKL 165
Query: 364 LYMDEISTGLDSSTTFQICKFLKQM----VHILDVT---MIVALLQPAPETYDLFDDIIL 416
+DE +GLD + + + + +L +T ++ ++P D + +
Sbjct: 166 AILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKP--------DKVHV 217
Query: 417 LSEGQIVYQGPRDNVLEFFEHMGFKC 442
L +G+IV G + + E E G+
Sbjct: 218 LYDGRIVKSGDPE-LAEELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 40/169 (23%), Positives = 67/169 (39%), Gaps = 36/169 (21%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE 936
+ LL +S G A++G +GAGK+TL+ +LAG G + G +K+ G
Sbjct: 332 DGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAG--ELGPLSGTVKV-GETVK-- 386
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLN 995
GY +Q+ + ++ + E+ L
Sbjct: 387 -----IGYFDQH--------------RDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF- 426
Query: 996 DSMVGLPG------VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
G G V LS ++ RL +A L+ P+++ +DEPT+ LD
Sbjct: 427 ----GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 6e-07
Identities = 56/255 (21%), Positives = 105/255 (41%), Gaps = 44/255 (17%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R L +S +++P L+G G+GK+TL+ + D SG+I GH+L ++
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADY 399
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
R A +SQ D+ T+ + Y + R E
Sbjct: 400 TLASLRRQVALVSQ-DVVLFNDTIANNI-----------AYGRTEQADRAE--------- 438
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
++ A V L + DT +G+ +SGGQ++R+ L+
Sbjct: 439 -----IERALAAAYAQDFVD-------KLPLGLDTPIGENGVL-LSGGQRQRLAIARALL 485
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
A +L +DE ++ LD+ + + L++++ +I L T + D I+++
Sbjct: 486 KDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS----TIEKADRIVVMD 541
Query: 419 EGQIVYQGPRDNVLE 433
+G+IV +G + +L
Sbjct: 542 DGRIVERGTHNELLA 556
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 6e-07
Identities = 61/211 (28%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFA 939
L +S R G + L+G +GAGK+TL+ +AG G G I+ +G P + A
Sbjct: 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG---SGSIQFAGQPLEAWSAAELA 68
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R Y Q + V++ L L T+ ++EV E + L V
Sbjct: 69 RHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALGLDDKLGRSV 124
Query: 1000 GLPGVSGLSTE-QRKRLTIAVELVANPSI------IFMDEPTSGLDARAAAIVMRTVRNT 1052
+SG E QR RL AV L P I + +DEP + LD A + R +
Sbjct: 125 N--QLSG--GEWQRVRLA-AVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL 179
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
G VV + H + + A D + LLK+G
Sbjct: 180 CQQGIAVVMSSHDLNHTLRHA-DRVWLLKQG 209
|
Length = 248 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 6e-07
Identities = 50/149 (33%), Positives = 76/149 (51%), Gaps = 12/149 (8%)
Query: 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVY 958
G SG GK+TL+ ++AG + GD+ I N R G Q+ P+++V
Sbjct: 36 GPSGCGKSTLLRMIAGLED--ITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSVA 93
Query: 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA 1018
E++ S L+L+ ++ V++V E+++L L D P LS QR+R+ I
Sbjct: 94 ENM--SFGLKLAG-AKKEEINQRVNQVAEVLQLAHLLDR---KP--KALSGGQRQRVAIG 145
Query: 1019 VELVANPSIIFMDEPTSGLDARAAAIVMR 1047
LVA PS+ +DEP S LDA A + MR
Sbjct: 146 RTLVAEPSVFLLDEPLSNLDA-ALRVQMR 173
|
Length = 369 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 6e-07
Identities = 51/167 (30%), Positives = 78/167 (46%), Gaps = 32/167 (19%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKT---GGYIEGDIKISG---YPKNQET--FARV 941
F +TAL+G SG GK+T + L G I G++ + G Y N++ +
Sbjct: 28 FNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQ 87
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------- 993
G Q P+ ++YE+++Y LRL+ K K +DE +E LK
Sbjct: 88 VGMVFQQPNPFPF-SIYENVIYG--LRLAG----VKDKAVLDEAVE-TSLKQAAIWDEVK 139
Query: 994 --LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L++S + L G Q++R+ IA L P +I +DEPTS LD
Sbjct: 140 DHLHESALSLSG------GQQQRVCIARVLAVKPDVILLDEPTSALD 180
|
Length = 252 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-07
Identities = 63/256 (24%), Positives = 92/256 (35%), Gaps = 54/256 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEM 260
LLGP G GKTTL+ LAG D SG I G ++ P R + Q M
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPD---SGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHM 57
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
TV E + F + V P EI + + ++
Sbjct: 58 TVEENVAFGLKMRKV--------------------PRAEIKPRVLEAL----RLVQLEEF 93
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
D +SGGQ++RV LV +L +DE + LD Q
Sbjct: 94 ---------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQ 138
Query: 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG-PRDNVLEFFEHMG 439
+ LK + L +T + + E + D I ++ +G+I G P E +E
Sbjct: 139 MQLELKTIQEQLGITFVF-VTHDQEEAMTMSDRIAIMRKGKIAQIGTPE----EIYEE-- 191
Query: 440 FKCPERKGVADFLQEV 455
P VA F+ E+
Sbjct: 192 ---PANLFVARFIGEI 204
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 7e-07
Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 20/159 (12%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGY----PKNQETFARVS- 942
+TA++G SG GKTTL+ D + G + +EG I G P+ T R
Sbjct: 31 ITAIIGPSGCGKTTLLRSINRMNDHIPGFR----VEGKIYFKGQDIYDPQLDVTEYRKKV 86
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
G Q P +++Y+++ + R+ K V+E ++ L S + P
Sbjct: 87 GMVFQKPTPFP-MSIYDNVAFG--PRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKP 143
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
G LS Q++RL IA L P +I +DEPTS LD A
Sbjct: 144 GTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIA 181
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 7e-07
Identities = 68/245 (27%), Positives = 102/245 (41%), Gaps = 29/245 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET--- 937
L VS G A++G +G+GK+TL +L G G I + G ++ET
Sbjct: 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE----AGTITVGGMVLSEETVWD 78
Query: 938 FARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R G QN D TV + + + + +R VD+ + V ++ +
Sbjct: 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVER---VDQALRQVGMEDFLN 135
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P LS Q++R+ IA L P II +DE TS LD R V+ TVR +
Sbjct: 136 RE---P--HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQK 190
Query: 1057 R-TVVCTIHQPSIDIFEAF--DELLLLKRGGRVIYAGPLGH---ESHKLIEYFEAVPGVP 1110
TV+ H D+ EA D ++++ G ++ G H L E VP
Sbjct: 191 GITVLSITH----DLDEAAQADRVIVM-NKGEILEEGTPEEIFKSGHMLQEIGLDVPFSV 245
Query: 1111 KIKEA 1115
K+KE
Sbjct: 246 KLKEL 250
|
Length = 279 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 7e-07
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQETFA 939
++ VS R G + +MG+SG+GK+TL+ R IE G + I G +
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLL-----RCINRLIEPTSGKVLIDGQDIAAMSRK 94
Query: 940 RVS-------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ Q+ P+ TV E++ + ++ V +R+ E +ELV L+
Sbjct: 95 ELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLE 151
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
LS ++R+ +A L +P I+ MDE S LD
Sbjct: 152 GWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMDEAFSALD 192
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 41/173 (23%), Positives = 61/173 (35%), Gaps = 48/173 (27%)
Query: 204 GPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--FVPQRTCAYISQHDLHHGEMT 261
GP G GKTTL+ LAG L D SG++ + G L E P R Y+ E++
Sbjct: 33 GPNGIGKTTLLRILAGLLRPD---SGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89
Query: 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYV 321
E L F A + I+ + AV + G E
Sbjct: 90 ALENLHF-------------WAAIHGGA-------QRTIEDALAAVGLTGFEDLPA---- 125
Query: 322 LKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374
+S GQ++R+ + + A + +DE +T LD
Sbjct: 126 -------------------AQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 51/211 (24%), Positives = 86/211 (40%), Gaps = 52/211 (24%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--K 933
E Q+L ++S + G AL+G SG+GK+TL+ +L G +G+I + G P
Sbjct: 11 PEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ--QGEITLDGVPVSD 68
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
++ + + Q PY L+ LR
Sbjct: 69 LEKALSSLISVLNQ----RPY-------LFDTTLR------------------------- 92
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
+ +G S +R+RL +A L+ + I+ +DEPT GLD ++ + V
Sbjct: 93 ---NNLGRR----FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFE-V 144
Query: 1054 DTGRTVV-CTIHQPSIDIFEAFDELLLLKRG 1083
+T++ T H I E D++L L+ G
Sbjct: 145 LKDKTLIWITHHLTGI---EHMDKILFLENG 172
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 9e-07
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIE-GDIKISGYPKNQETF 938
L ++S +PG ++G +G+GK++L+ L R + G I + IS +
Sbjct: 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLH---- 74
Query: 939 ARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
D+ S + + +L+S +R + D + + + +E V LK +S
Sbjct: 75 ----------DLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVES 124
Query: 998 MV-GLPGV-----SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
+ GL V LS QR+ L +A L+ I+ +DE T+ +D A++ +T+R
Sbjct: 125 LPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIR- 183
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087
TV+ H+ +D D +L+L + GRV+
Sbjct: 184 EAFKDCTVLTIAHR--LDTIIDSDRILVLDK-GRVV 216
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 67/278 (24%), Positives = 106/278 (38%), Gaps = 66/278 (23%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
L VS +K LLGP G GKTTL+ +AG SG+I G ++
Sbjct: 12 GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLP 68
Query: 243 P-QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P +R + Q+ +TV E + F R + AE+ R +A
Sbjct: 69 PHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPK-----AEIKERVAEA--------- 114
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
L ++ L+ A+ ++ SGGQ++RV LV
Sbjct: 115 --------------------LDLVQLEGYANRKP-SQL----SGGQQQRVAIARALVNEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------LFDDII 415
VL +DE LD + LK++ L +T + T+D + D I
Sbjct: 150 KVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFV-------THDQEEALTMSDRIA 202
Query: 416 LLSEGQIVYQG-PRDNVLEFFEHMGFKCPERKGVADFL 452
++++G+I G P + +E P + VADF+
Sbjct: 203 VMNKGKIQQIGTPEE----IYEE-----PANRFVADFI 231
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 1e-06
Identities = 51/228 (22%), Positives = 91/228 (39%), Gaps = 48/228 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
++GP GAGK+TL+ +AG + ASG I P QR + + Q + +
Sbjct: 29 IMGPSGAGKSTLLNLIAGFI---EPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL 85
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM--KAVAVAGQETSLVT 318
TVR+ + G+ P +++A K V A Q
Sbjct: 86 TVRQNIGL------------------------GLHPGLKLNAEQQEKVVDAAQQ------ 115
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
+G+ D + D + +SGGQ++RV LV +L +DE + LD
Sbjct: 116 ------VGIA---DYL--DRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLR 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
++ +KQ+ T+++ + + + I ++S+G+I
Sbjct: 165 EEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCG 235
+R IL+D+S ++P R+T LLG GAGK+TL+ ALAG L + R +G +T G
Sbjct: 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNG 70
Query: 236 HELNEFVPQR 245
L R
Sbjct: 71 EPLAAIDAPR 80
|
Length = 272 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 1e-06
Identities = 44/163 (26%), Positives = 75/163 (46%), Gaps = 13/163 (7%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVL--------AGRKTGGYIEGDIKISGYPKNQE 936
VS F +TA++G SG GK+T++ + + R TG + D I +
Sbjct: 22 DVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLN 995
+ R G Q P +++Y++++ A +L+ V+ + V+ ++ V L +
Sbjct: 82 SIRRRVGMVFQKPNPFPAMSIYDNVI--AGYKLNGRVNRSEADEIVESSLKRVALWDEVK 139
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D + LS Q++RL IA + P +I MDEP S LD
Sbjct: 140 DRLKS--NAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180
|
Length = 252 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-06
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 34/217 (15%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+ +L ++ PG + AL+G SG+GK+T+ +L + TG G + + G P
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG----GQVLLDGVP----- 544
Query: 938 FARVSGYCEQNDIHSPYVTV-YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
+ Y + + +H V E +L+S +R + +E+M + + +D
Sbjct: 545 ---LVQY-DHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPD--EEIMAAAKAANAHD 598
Query: 997 SMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
++ P G G LS Q++R+ IA LV P ++ +DE TS LDA +
Sbjct: 599 FIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAE----CEQ 654
Query: 1048 TVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
++ + RTV+ H+ S E D++L+LK+G
Sbjct: 655 LLQESRSRASRTVLLIAHRLS--TVERADQILVLKKG 689
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 63/208 (30%), Positives = 90/208 (43%), Gaps = 49/208 (23%)
Query: 866 MPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLA 914
+M+ V GE Q L V +TA +G SG GK+T + D +
Sbjct: 16 TEIKMRARDVSVFYGEK--QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTID 73
Query: 915 GRKTGGYIEGDIKISG---YPKNQ---ETFARVSGYCEQNDIHSPY-VTVYESLLYSAWL 967
G + + G I + G Y E ARV G Q +P+ ++YE++ Y
Sbjct: 74 GCR----VTGKITLDGEDIYDPRLDVVELRARV-GMVFQKP--NPFPKSIYENVAYGP-- 124
Query: 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL----------PGVSGLSTEQRKRLTI 1017
R+ +K E+ E+VE SL + GL PG +GLS Q++RL I
Sbjct: 125 RIHGLARSK------AELDEIVE-TSLRKA--GLWEEVKDRLHEPG-TGLSGGQQQRLCI 174
Query: 1018 AVELVANPSIIFMDEPTSGLDARAAAIV 1045
A + +P +I MDEP S LD A A V
Sbjct: 175 ARAIAVSPEVILMDEPCSALDPIATAKV 202
|
Length = 267 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 49/219 (22%), Positives = 93/219 (42%), Gaps = 17/219 (7%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKNQET 937
L+ ++ + G + AL+G SG+GK+ ++ +L T G+I + G P +
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLT--QTSGEILLDGRPLLPLS 58
Query: 938 F-ARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R QN + P T+ + + +K+ + + E +E V L
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL---SKQARALILEALEAVGLPDP 115
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1053
+ + P LS +R+ IA+ L+ P + DEPT+ LD A V++ +R
Sbjct: 116 EEVLKKYP--FQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQ 173
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
G ++ H + + DE+ ++ GR++ G +
Sbjct: 174 LFGTGILLITHDLGV-VARIADEVAVMDD-GRIVERGTV 210
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 25/90 (27%), Positives = 48/90 (53%), Gaps = 8/90 (8%)
Query: 338 EMRRGI------SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
E+RR I SGGQ++RV L+ ++L +DE ++GLD ++ ++ + L+++
Sbjct: 70 ELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AE 128
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
T+I+ P D +I+L +G+
Sbjct: 129 EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-06
Identities = 71/253 (28%), Positives = 108/253 (42%), Gaps = 57/253 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL----GKDLRASGKITYCGHELNEFV 242
LK ++ + M LLGP GAGK+TL L G L G+ L I Y L E
Sbjct: 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEV- 76
Query: 243 PQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
++T + Q+ D TV E + F LG+ E+ +R K+A
Sbjct: 77 -RKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKE-----EVEKRVKEA--------- 121
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+KAV + G E ++ +SGGQKKRV +L
Sbjct: 122 --LKAVGMEGFE-----------------------NKPPHHLSGGQKKRVAIAGILAMKP 156
Query: 362 NVLYMDEISTGLDSSTTFQICKFL----KQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
++ +DE ++GLD QI K L K+ + I+ T V L P Y D + ++
Sbjct: 157 EIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDL---VP-VYA--DKVYVM 210
Query: 418 SEGQIVYQG-PRD 429
S+G+I+ +G P++
Sbjct: 211 SDGKIIKEGTPKE 223
|
Length = 275 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 45/203 (22%), Positives = 76/203 (37%), Gaps = 60/203 (29%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYC 234
++ +LKD+S + ++GP GAGK+TL+ LAG+LG SG +
Sbjct: 326 NVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVK-V 381
Query: 235 GHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294
G + Y Q H E+ +T +L ELS
Sbjct: 382 GETVK-------IGYFDQ---HRDELDPDKT---------------VLEELSEGFPDGDE 416
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI---SGGQKKRV 351
+ E+ A++ G G++ + + SGG+K R+
Sbjct: 417 Q---EVRAYLGR------------------FGFT-------GEDQEKPVGVLSGGEKARL 448
Query: 352 TTGEMLVGTANVLYMDEISTGLD 374
++L+ N+L +DE + LD
Sbjct: 449 LLAKLLLQPPNLLLLDEPTNHLD 471
|
Length = 530 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY------IEGDIKI 928
V +L +S PG +TAL+G +GAGK+TL+ LAG TGG + GD+ +
Sbjct: 9 VARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68
Query: 929 SGYP 932
+G P
Sbjct: 69 NGEP 72
|
Length = 272 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 47/191 (24%), Positives = 83/191 (43%), Gaps = 26/191 (13%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-------------YPKNQETF 938
G AL+G SG+GK+T++ +L + EG I++ G P +++
Sbjct: 25 AGEKVALIGPSGSGKSTILRILMTLE--PIDEGQIQVEGEQLYHMPGRNGPLVPADEKHL 82
Query: 939 ARVS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
++ G Q+ P+ TV +++ + L L R MEL+++ L
Sbjct: 83 RQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGM-----ARAEAEKRAMELLDMVGLA 137
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVD 1054
D +P + LS Q++R+ IA L P ++ DE TS LD V+ +R +
Sbjct: 138 DKADHMP--AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASE 195
Query: 1055 TGRTVVCTIHQ 1065
T++ H+
Sbjct: 196 HDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 2e-06
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 21/179 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +VS R G + +L G +GAGK+TLM VL+G G EG+I G + S
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL------QAS 74
Query: 943 GYCEQND-----IHS-----PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ IH ++V E++ + +D + +++ ++L
Sbjct: 75 NIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKL- 133
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
D P V L Q++ + IA L ++ +DEPT+ L A+++ +R+
Sbjct: 134 ---DINPATP-VGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRD 188
|
Length = 506 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 2e-06
Identities = 53/196 (27%), Positives = 90/196 (45%), Gaps = 40/196 (20%)
Query: 866 MPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---T 918
M +M+++ + GE Q L+ ++ +TAL+G SG GK+T + L +
Sbjct: 1 MKIKMESKNLNLWYGEK--QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS 58
Query: 919 GGYIEGDIKISG---YPKNQETF---ARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSS 971
IEG++ + G Y K+ + RV G Q +P+ +++Y+++ Y +
Sbjct: 59 NVKIEGEVLLDGKNIYDKDVDVVELRKRV-GMVFQKP--NPFPMSIYDNVAYGPRIHGIK 115
Query: 972 DVDTKKRKMFVDEVMELVELKS---------LNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022
D K +D+++E K+ L S + L G Q++RL IA +
Sbjct: 116 D------KKELDKIVEWALKKAALWDEVKDDLKKSALKLSG------GQQQRLCIARTIA 163
Query: 1023 ANPSIIFMDEPTSGLD 1038
P +I MDEPTS LD
Sbjct: 164 VKPDVILMDEPTSALD 179
|
Length = 251 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 2e-06
Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 12/188 (6%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQET 937
Q L V+ RPG + L G SGAGK+TL+ ++ G R + G I I+ +
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 938 FARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
F R G Q+ TVY+++ + +S D ++R V ++ V L D
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRR---VSAALDKV---GLLD 129
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
P LS +++R+ IA +V P+++ DEPT LD + ++R G
Sbjct: 130 KAKNFP--IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187
Query: 1057 RTVVCTIH 1064
TV+ H
Sbjct: 188 VTVLMATH 195
|
Length = 222 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 3e-06
Identities = 58/242 (23%), Positives = 98/242 (40%), Gaps = 56/242 (23%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-----FVP--QRTCAYISQ 252
T + G G+GKTTL+ +AG D G+I G L + F+P +R Y+ Q
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQ 82
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
++VR L RY G+K
Sbjct: 83 EARLFPHLSVRGNL-----------RY-------------GMK------------RARPS 106
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
E + + V+++LG+ + G +SGG+K+RV G L+ + +L MDE
Sbjct: 107 ERRISFERVIELLGIGHLLGRLPGR-----LSGGEKQRVAIGRALLSSPRLLLMDEPLAA 161
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVA--LLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
LD ++I +L+++ + ++ LQ E L D +++L +G++ GP
Sbjct: 162 LDDPRKYEILPYLERLHAEFGIPILYVSHSLQ---EVLRLADRVVVLEDGRVAAAGPIAE 218
Query: 431 VL 432
V
Sbjct: 219 VW 220
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 3e-06
Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 36/171 (21%)
Query: 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-----------NQETFARVSG 943
+TA++G SG GK+T + L +EG +K+ G N R G
Sbjct: 35 VTAIIGPSGCGKSTFIKTL---NRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIG 91
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV--------ELK-SL 994
Q P +++YE++ Y +R+S+ K + +DE++E E+K L
Sbjct: 92 MVFQRPNPFP-MSIYENVAYG--VRISA----KLPQADLDEIVESALKGAALWQEVKDKL 144
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
N S +GL G Q++RL IA L P ++ MDEP S LD A V
Sbjct: 145 NKSALGLSG------GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKV 189
|
Length = 259 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-06
Identities = 51/192 (26%), Positives = 78/192 (40%), Gaps = 36/192 (18%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI 950
RPG + ++G +G GK+T + +LAG + P E R G QN
Sbjct: 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE----DPPSWDEVIKRFRGTELQN-- 151
Query: 951 HSPYVTVYESLLYSAWLR----------LSSDVDTKKRKM--------FVDEVMELVELK 992
Y LY LR + V K ++ DEV+E + L+
Sbjct: 152 -------YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE 204
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
++ D VS LS + +R+ IA L+ + + F DEP+S LD R R +R
Sbjct: 205 NVLDR-----DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL 259
Query: 1053 VDTGRTVVCTIH 1064
+ G+ V+ H
Sbjct: 260 AEDGKYVIVVEH 271
|
Length = 591 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 23/192 (11%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD 925
E K ++L +S F G + ++G SGAGK+TL+ ++ + EG
Sbjct: 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLI--NRLIDPTEGS 59
Query: 926 IKISGYP-KNQET--FARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRK 979
I I G K + R G Q P++ TV +++ Y L+ +VD
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKDNIEYGPMLKGEKNVD----- 110
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
V+ + +V L + V LS + +R++IA L NP ++ +DEPTS LD
Sbjct: 111 --VEYYLSIVGL----NKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDP 164
Query: 1040 RAAAIVMRTVRN 1051
+ I+ +
Sbjct: 165 TSTEIIEELIVK 176
|
Length = 241 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 3e-06
Identities = 52/189 (27%), Positives = 87/189 (46%), Gaps = 13/189 (6%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGY-IEGDIKISGYP----KN 934
+L VS F +T+LMG +G+GKTT + L K GY GD+ + G ++
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKK-RKMFVDEVMELVELKS 993
F R G Q P +++ +++L A +R V K+ R + + E+ +
Sbjct: 96 VLEFRRRVGMLFQRPNPFP-MSIMDNVL--AGVRAHKLVPRKEFRGVAQARLTEVGLWDA 152
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
+ D + P LS Q++ L +A L NP ++ +DEPTS LD + +R+
Sbjct: 153 VKDRLSDSP--FRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 1054 DTGRTVVCT 1062
D ++ T
Sbjct: 211 DRLTVIIVT 219
|
Length = 276 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 3e-06
Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 32/200 (16%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP-- 932
++R+ L +S G L + G +GAGKT+L+ +LAG R G++ G P
Sbjct: 12 DERI-LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPD----AGEVLWQGEPIR 66
Query: 933 KNQETFARVSGYC-EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
+ ++ + + Y Q I +T E+L + RL D + + E +
Sbjct: 67 RQRDEYHQDLLYLGHQPGI-KTELTALENLRFYQ--RLHGPGDD-------EALWEALA- 115
Query: 992 KSLNDSMVGLPG-----VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
VGL G V LS Q++R+ +A + + +DEP + +D + A +
Sbjct: 116 ------QVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169
Query: 1047 RTVRNTVDTGRTVVCTIHQP 1066
+ + G V+ T HQ
Sbjct: 170 ALLAQHAEQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
V + + G+SGGQ++RV L +VL +DE ++ LD T ++ LK + L +
Sbjct: 93 VLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGI 152
Query: 395 TMIVALLQPAPETYDLFDDIILLSEGQ 421
T+++ E L D +++L +G+
Sbjct: 153 TVVLVTHDLD-EAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 44/175 (25%), Positives = 82/175 (46%), Gaps = 9/175 (5%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYP-KNQETF 938
Q L ++ +TAL+G SG GK+T + I+G ++I G KNQ+
Sbjct: 16 QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVV 75
Query: 939 A---RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
A V +Q ++ ++YE++ Y+ L ++ + VD + ++ + +
Sbjct: 76 ALRKNVGMVFQQPNVFVK--SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
D + LS Q++RL IA L P ++ +DEPTS LD ++ ++ ++
Sbjct: 134 DKLK--QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLK 186
|
Length = 246 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-06
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 25/211 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKN------ 934
L +++ G AL+G SG+GK+T+ ++L T Y EG+I + G+
Sbjct: 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLL----TRFYDIDEGEILLDGHDLRDYTLAS 414
Query: 935 -QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LK 992
+ A VS QN +H T+ ++ Y+ + S + + +M M+ + +
Sbjct: 415 LRNQVALVS----QN-VHLFNDTIANNIAYARTEQYSREQIEEAARM--AYAMDFINKMD 467
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ D+++G GV LS QR+R+ IA L+ + I+ +DE TS LD + + + +
Sbjct: 468 NGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAAL-DE 525
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
+ RT + H+ S E DE+L+++ G
Sbjct: 526 LQKNRTSLVIAHRLS--TIEKADEILVVEDG 554
|
Length = 582 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 4e-06
Identities = 43/209 (20%), Positives = 84/209 (40%), Gaps = 64/209 (30%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
VL + GVSG+GK+TL+ G Y G ++ + S
Sbjct: 21 NVLVVVTGVSGSGKSTLV------NEGLYASGKARLISFLPK----------------FS 58
Query: 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGLPGVSGLS 1008
+ F+D++ L+++ +L + S LS
Sbjct: 59 RNKLI-----------------------FIDQLQFLIDVGLGYLTLGQKL------STLS 89
Query: 1009 TEQRKRLTIAVELVANP--SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
+ +R+ +A EL + P ++ +DEP++GL + ++ ++ +D G TV+ H
Sbjct: 90 GGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL 149
Query: 1067 SIDIFEAFDELLLL-----KRGGRVIYAG 1090
D+ + D ++ K GG+V+++G
Sbjct: 150 --DVLSSADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 5e-06
Identities = 58/244 (23%), Positives = 92/244 (37%), Gaps = 56/244 (22%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL-----NEFVP--QRTCAY 249
+T L GP G+GKT+L+ +AG D G+I G L F+P +R Y
Sbjct: 24 RGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGY 80
Query: 250 ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAV 309
+ Q TVR L + S R + F + VA+
Sbjct: 81 VFQDARLFPHYTVRGNLRYG-------------MWKSMRAQ------------FDQLVAL 115
Query: 310 AGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEI 369
G E L D +SGG+K+RV G L+ +L MDE
Sbjct: 116 LGIEHLL--------------------DRYPGTLSGGEKQRVAIGRALLTAPELLLMDEP 155
Query: 370 STGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRD 429
LD +I +L+++ +++ ++ E L D +++L G++ GP +
Sbjct: 156 LASLDLPRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLE 214
Query: 430 NVLE 433
V
Sbjct: 215 EVWG 218
|
Length = 352 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 5e-06
Identities = 56/224 (25%), Positives = 101/224 (45%), Gaps = 15/224 (6%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGY 931
G +Q L++VS G + ++G SGAGK+TL+ ++L +G I ++
Sbjct: 13 QGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTL 72
Query: 932 PKNQETFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
++ T AR G Q+ TV+ ++ L ++D + +V EL+
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNTPKDEIKRKVTELLA 126
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L L D P S LS Q++R+ IA L +NP ++ DE TS LD ++ ++
Sbjct: 127 LVGLGDKHDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLK 184
Query: 1051 NTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093
G T++ H+ +D+ + + + + G +I G +
Sbjct: 185 EINRRLGLTILLITHE--MDVVKRICDCVAVISNGELIEQGTVS 226
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 5e-06
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 26/154 (16%)
Query: 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS-- 952
LT L+G SG GKTT++ ++AG +T G I + G + V E +++
Sbjct: 43 LT-LLGPSGCGKTTVLRLIAGFETPD--SGRIMLDG-----QDITHVPA--ENRHVNTVF 92
Query: 953 ------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
P++TV+E++ + ++ + + R V E + +V+L+
Sbjct: 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPR---VMEALRMVQLEEFAQRKP-----HQ 144
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS Q++R+ IA +V P ++ +DE S LD +
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYK 178
|
Length = 375 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 6e-06
Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 26/179 (14%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISGYPKNQ-- 935
Q L +++ + +TAL+G SG GK+T + + + G + EG+I + +P N
Sbjct: 30 QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL--HPDNVNI 87
Query: 936 --------ETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
E R+S ++ + P+ +++E++ Y +R K+R + + V
Sbjct: 88 LSPEVDPIEVRMRISMVFQKPN---PFPKSIFENVAYGLRIR-----GVKRRSILEERVE 139
Query: 987 ELVELKSLNDSMVGLPG--VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ +L D + G LS Q++RL IA L +P I+ DEPTS LD A A
Sbjct: 140 NALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATA 198
|
Length = 265 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 6e-06
Identities = 62/213 (29%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI----EGDIKISGYPKNQETF 938
L VS G L+G +GAGK+TL+ +LAG I G + + G
Sbjct: 38 LKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAG------IYPPDSGTVTVRG-------- 83
Query: 939 ARVSGYCEQNDIHSPYVTVYESL-LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
RVS +P +T E++ L L LS K+ +DE++E EL D
Sbjct: 84 -RVSSLLGLGGGFNPELTGRENIYLNGRLLGLS----RKEIDEKIDEIIEFSELGDFID- 137
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
LP V S+ + RL A+ P I+ +DE + DA R +R + G+
Sbjct: 138 ---LP-VKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGK 193
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
TV+ H PS I D L+L++ G++ + G
Sbjct: 194 TVILVSHDPSS-IKRLCDRALVLEK-GKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 31/201 (15%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLM---DVLAGRKTGGYIEGDIKISG---YPK 933
Q L VS +TA++G SG GK+T + + + +EG++ G Y
Sbjct: 52 EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA 111
Query: 934 NQETFA--RVSGYCEQNDIHSPYVTVYESLLYSAWLRL---SSDVDTK-----KRKMFVD 983
+ + A R G Q P ++Y+++ Y L++ D+D + +R D
Sbjct: 112 DVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQGYDGDIDERVEESLRRAALWD 168
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
EV + ++ L+ LS Q++RL IA + +P +I MDEP S LD A +
Sbjct: 169 EVKDQLDSSGLD-----------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATS 217
Query: 1044 IVMRTVRNTVDTGRTVVCTIH 1064
+ + + TVV H
Sbjct: 218 KIEDLIEELAEE-YTVVIVTH 237
|
Length = 285 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 53/208 (25%), Positives = 93/208 (44%), Gaps = 21/208 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L VS G T+++G +G+GK+T+ ++ G + G+I + + F ++
Sbjct: 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAITDDNFEKLR 82
Query: 943 ---GYCEQNDIHSPYVTVYESLLYSAWLRLSSD-VDTKKRKMFVDEVMELVELKSLNDSM 998
G QN + V + Y L + V + V E ++ V++ D
Sbjct: 83 KHIGIVFQNPDNQ---FVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYE 139
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT-VDTGR 1057
P + LS Q++R+ IA L NPS+I +DE TS LD A ++ VR +
Sbjct: 140 ---P--NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNI 194
Query: 1058 TVVCTIHQPSIDIFEAF--DELLLLKRG 1083
T++ H D+ EA D ++++ +G
Sbjct: 195 TIISITH----DLSEAMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 52/188 (27%), Positives = 90/188 (47%), Gaps = 17/188 (9%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQ 935
++Q LH VS G + L+G +GAGKTTL+ L G R T G I D K I+ + +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
V+ E + S +TV E+L + + + + + V EL L+
Sbjct: 77 IMREAVAIVPEGRRVFS-RMTVEENLAMGGFF-----AERDQFQERIKWVYEL--FPRLH 128
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+ + G +S +++ L I L++ P ++ +DEP+ GL A I+++ + +T++
Sbjct: 129 ERRIQRAGT--MSGGEQQMLAIGRALMSQPRLLLLDEPSLGL----APIIIQQIFDTIEQ 182
Query: 1056 GRTVVCTI 1063
R TI
Sbjct: 183 LREQGMTI 190
|
Length = 237 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 9e-06
Identities = 70/257 (27%), Positives = 107/257 (41%), Gaps = 66/257 (25%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
IL DVS ++P ++GP G+GK+TL+ L LG + SG + Y G +L Q
Sbjct: 467 LILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLL---LGFETPESGSVFYDGQDLAGLDVQ 523
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R + Q+ GR L G+ +E +A A + D +
Sbjct: 524 AVRRQLGVVLQN----------------GR-LMSGSIFENIA------GGAPLTLD---E 557
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTM----VGDEMRRGISGGQKKRVTTGEML 357
A +A +AG DI A M V E +SGGQ++R+ L
Sbjct: 558 A-WEAARMAGLAE-------------DIRAMPMGMHTVISEGGGTLSGGQRQRLLIARAL 603
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLFD 412
V +L DE ++ LD+ T + + L++ L VT IV + ++ A D
Sbjct: 604 VRKPRILLFDEATSALDNRTQAIVSESLER----LKVTRIVIAHRLSTIRNA-------D 652
Query: 413 DIILLSEGQIVYQGPRD 429
I +L G++V QG D
Sbjct: 653 RIYVLDAGRVVQQGTYD 669
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 9e-06
Identities = 48/173 (27%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGY 931
+ ++ +S +TAL+G SG GK+T + D++ ++ G I EG + I
Sbjct: 35 RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG-LNILDS 93
Query: 932 PKNQETFARVSGYCEQNDIHSP---YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
N R G Q P Y + +L Y+ ++RK +DE++E
Sbjct: 94 NINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAG----------ERRKSVLDEIVEE 143
Query: 989 VELKS-LNDSMVGLPGVSGLSTE--QRKRLTIAVELVANPSIIFMDEPTSGLD 1038
K+ L D + S LS Q++RL IA L P+++ +DEP S LD
Sbjct: 144 SLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196
|
Length = 268 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 48/164 (29%), Positives = 78/164 (47%), Gaps = 36/164 (21%)
Query: 895 LTALMGVSGAGKTT-------LMDVLAGRKTGG---YIEGDIKISGYPKNQETFARVSGY 944
+TA++G SG GK+T +++++ KT G Y + +I Y +E V
Sbjct: 52 VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV-EELRTNVGMV 110
Query: 945 CEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV--------ELKS-L 994
++ + P+ ++Y+++ Y + K K +DE++E ELK L
Sbjct: 111 FQKPN---PFPKSIYDNVTYGP------KIHGIKDKKTLDEIVEKSLRGAAIWDELKDRL 161
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+D+ GL G Q++RL IA L P +I MDEPTS LD
Sbjct: 162 HDNAYGLSG------GQQQRLCIARCLAIEPDVILMDEPTSALD 199
|
Length = 271 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 40/191 (20%), Positives = 68/191 (35%), Gaps = 44/191 (23%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+V L+D+S V+ L+GP G GK+TL+ +AG SG++ G
Sbjct: 11 GGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEP 67
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ P Y+ Q D +TV + + GV + E +
Sbjct: 68 VTG--PGPDRGYVFQQDALLPWLTVLDNVALGLELQGV----------PKAEARE----- 110
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ ++ V ++G E + +SGG ++RV L
Sbjct: 111 -RAEELLELVGLSGFE-----------------------NAYPHQLSGGMRQRVALARAL 146
Query: 358 VGTANVLYMDE 368
+VL +DE
Sbjct: 147 AVDPDVLLLDE 157
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 1e-05
Identities = 57/261 (21%), Positives = 99/261 (37%), Gaps = 56/261 (21%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KR +++ VS VK + LLGP GAGKTT + G + D SGKI
Sbjct: 11 GKR--KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKI-------- 57
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-----ELLAELSRREKQAGI 294
+ D+ M R L G+G Y + +L+ E
Sbjct: 58 ---------LLDGQDITKLPMHKRARL-------GIG--YLPQEASIFRKLTVEEN---- 95
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
I A ++ ++ +E + +L+ + + +SGG+++RV
Sbjct: 96 -----ILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGERRRVEIA 145
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL--QPAPETYDLFD 412
L L +DE G+D I ++++ IL I L+ ET + D
Sbjct: 146 RALATNPKFLLLDEPFAGVDPIAVQDI----QKIIKILKDRGIGVLITDHNVRETLSITD 201
Query: 413 DIILLSEGQIVYQGPRDNVLE 433
++ EG+++ +G + +
Sbjct: 202 RAYIIYEGKVLAEGTPEEIAA 222
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 64/254 (25%), Positives = 104/254 (40%), Gaps = 50/254 (19%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
+ + DV+ ++ +L+GP G+GKTT + + + SG+I G ++++ P
Sbjct: 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPV 71
Query: 244 --QRTCAY-ISQHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+R Y I Q L H +TV E + + LG R +K+A
Sbjct: 72 ELRRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKE--------RIKKRA------ 114
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
D +L ++GLD + D +SGGQ++RV L
Sbjct: 115 --------------------DELLDLVGLD---PSEYADRYPHELSGGQQQRVGVARALA 151
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L MDE LD T Q+ + +K++ L T IV + E L D I ++
Sbjct: 152 ADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKT-IVFVTHDIDEALKLADRIAVMD 210
Query: 419 EGQIVYQGPRDNVL 432
G+IV D +L
Sbjct: 211 AGEIVQYDTPDEIL 224
|
Length = 309 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 58/240 (24%), Positives = 100/240 (41%), Gaps = 44/240 (18%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQ 252
V + +LGP GAGK+TL+ +AG ASG+I G + P +R + + Q
Sbjct: 22 VPAGEIVAILGPSGAGKSTLLNLIAGFE---TPASGEILINGVDHTASPPAERPVSMLFQ 78
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
+ +TV + + LG+ +L AE +REK ++A V +AG
Sbjct: 79 ENNLFAHLTVAQNIG-----LGLSPGLKLNAE--QREK---------VEAAAAQVGLAGF 122
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
L + +SGGQ++RV LV +L +DE +
Sbjct: 123 LKRLPGE-----------------------LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
LD + ++ + Q+ +T+++ P + + D ++ L G+I QG +L
Sbjct: 160 LDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (114), Expect = 1e-05
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 55/254 (21%)
Query: 196 PSR-MTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVPQRTCAYISQ 252
P+R +T L+GP G+GKTT + L K R SG + G + +
Sbjct: 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY----------- 93
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVA---- 308
R+ L+F R VG ++ +P+P + M V
Sbjct: 94 ----------RDVLEFRRR---VGMLFQ--------------RPNPFPMSIMDNVLAGVR 126
Query: 309 ----VAGQETSLVTDYVLKILGL-DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
V +E V L +GL D D + R +SGGQ++ + L V
Sbjct: 127 AHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR--LSGGQQQLLCLARTLAVNPEV 184
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ LD +TT +I +F++ + L V ++ L A + D L +G++V
Sbjct: 185 LLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAAR---ISDRAALFFDGRLV 241
Query: 424 YQGPRDNVLEFFEH 437
+GP + + +H
Sbjct: 242 EEGPTEQLFSSPKH 255
|
Length = 276 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 1e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q++R+ IA L P ++ DEPTS LD V++ +++ + GRT+V H+
Sbjct: 153 LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHE 211
|
Length = 256 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 53/208 (25%), Positives = 80/208 (38%), Gaps = 62/208 (29%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
LL +S +PG + G SG GK++L LAG + G I G P+ ++
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRI---GMPEGEDLL--- 67
Query: 942 SGYCEQNDIHSPYV---TVYESLLYSAWLR-LSSDVDTKKRKMFVDEVMELVELKSLNDS 997
+ Q PY+ T+ E L+Y W LS
Sbjct: 68 --FLPQ----RPYLPLGTLREQLIY-PWDDVLSGG------------------------- 95
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
EQ+ RL A L+ P +F+DE TS LD + + + ++ + G
Sbjct: 96 ------------EQQ-RLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLK---ELGI 139
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
TV+ H+PS+ F D +L L G
Sbjct: 140 TVISVGHRPSLWKF--HDRVLDLDGEGG 165
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-05
Identities = 57/207 (27%), Positives = 92/207 (44%), Gaps = 33/207 (15%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQETFARVSGYCE 946
PG + AL+G +GAGK+T+M VL G + G I ++ +G +QE A +
Sbjct: 29 PGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQE--AGIG---- 82
Query: 947 QNDIHS-----PYVTVYESLLY-----SAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
IH P +T+ E++ + + R+ +KM+ E +L L LN
Sbjct: 83 --IIHQELNLIPQLTIAENIFLGREFVNRFGRI------DWKKMY-AEADKL--LARLNL 131
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
V LS +++ + IA L +I MDEPT L + R +R G
Sbjct: 132 RFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQG 191
Query: 1057 RTVVCTIHQPSIDIFEAFDELLLLKRG 1083
R +V H+ +IFE D++ + + G
Sbjct: 192 RGIVYISHRLK-EIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 62/257 (24%), Positives = 110/257 (42%), Gaps = 52/257 (20%)
Query: 881 QLLHSVS-GVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG-- 930
Q+L ++ +++ V TA +G SG GK+T + D + K ++G++ I G
Sbjct: 19 QILFDINLDIYKREV-TAFIGPSGCGKSTFLRCFNRMNDFVPNCK----VKGELDIDGID 73
Query: 931 -YPKNQETF---ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
Y + A+V G Q P ++Y+++ Y +L KK+ +DE++
Sbjct: 74 VYSVDTNVVLLRAKV-GMVFQKPNPFPK-SIYDNVAYGP--KLHGLAKNKKK---LDEIV 126
Query: 987 E--------LVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
E EL L DS L G Q++RL IA + P+++ MDEP S L
Sbjct: 127 EKSLTSVGLWEELGDRLKDSAFELSG------GQQQRLCIARAIAVKPTMLLMDEPCSAL 180
Query: 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESH 1097
D A ++ ++ + T++ H S+ + + + + GR++ E +
Sbjct: 181 DPVATNVIENLIQE-LKKNFTIIVVTH--SMKQAKKVSDRVAFFQSGRIV-------EYN 230
Query: 1098 KLIEYFEAVPGVPKIKE 1114
E F+ P K K
Sbjct: 231 TTQEIFKN-PQSSKTKR 246
|
Length = 251 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 44/152 (28%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR--VSGYCEQN 948
G A++G SGAGK+TL++++AG T G + ++G +R VS ++N
Sbjct: 23 ERGERVAILGPSGAGKSTLLNLIAGFLTPA--SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80
Query: 949 DIHSPYVTVYE--SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
++ ++TV + L + L+L++ ++ K+ + + D + LPG
Sbjct: 81 NLF-SHLTVAQNIGLGLNPGLKLNAA---QREKL-----HAIARQMGIEDLLARLPG--Q 129
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
LS QR+R+ +A LV I+ +DEP S LD
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 2e-05
Identities = 58/250 (23%), Positives = 110/250 (44%), Gaps = 43/250 (17%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ +KP ++GP GAGKTTL+ L G+I G ++ +
Sbjct: 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQ---KGQILIDGIDIRD----- 69
Query: 246 TCAYISQHDLHHGEMTV-RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
IS+ L V ++T FSG + E +P+ + +
Sbjct: 70 ----ISRKSLRSMIGVVLQDTFLFSG---------------TIMENIRLGRPNATDEEVI 110
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
+A AG D+++K+ G DT++G E +S G+++ + ++ +
Sbjct: 111 EAAKEAG-----AHDFIMKLPNGY----DTVLG-ENGGNLSQGERQLLAIARAMLRDPKI 160
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423
L +DE ++ +D+ T I + L++++ +I L T D I++L +G+I+
Sbjct: 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLS----TIKNADKILVLDDGKII 216
Query: 424 YQGPRDNVLE 433
+G D +L
Sbjct: 217 EEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-05
Identities = 53/230 (23%), Positives = 91/230 (39%), Gaps = 57/230 (24%)
Query: 865 DMPAEMKTEGVGEDRLQLLH-SVSGVFRPGVLTA-------LMGVSGAGKTTLMDVLAGR 916
D+ E EG+GE L++ + S G R T + G+ GAG+T L L G
Sbjct: 249 DLFPEPPEEGIGEPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGA 308
Query: 917 KTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSP---------YVT----------- 956
+ G+I + G + I SP YV
Sbjct: 309 R--PASSGEILLDG---------------KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLD 351
Query: 957 --VYESLLYSAWLRLSSD--VDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSGLSTE 1010
+ E++ ++ R S +D +K + + + + +K S + L G G
Sbjct: 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSG--G---N 406
Query: 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
Q+K + +A L +P ++ +DEPT G+D A A + R +R G+ ++
Sbjct: 407 QQK-VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAIL 455
|
Length = 500 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 42/172 (24%), Positives = 76/172 (44%), Gaps = 32/172 (18%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF 938
+L +S + T ++G+SG+GK+TL +L G G+I ++G+ T
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARS--GEILLNGFSLKDIDRHTL 546
Query: 939 ARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
+ Y Q PY+ ++ E+LL A K + DE+ E+ +
Sbjct: 547 RQFINYLPQE----PYIFSGSILENLLLGA-----------KENVSQDEIWAACEIAEIK 591
Query: 996 DSMVGLP---------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D + +P S +S Q++R+ +A L+ + ++ +DE TS LD
Sbjct: 592 DDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 43/184 (23%), Positives = 83/184 (45%), Gaps = 14/184 (7%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV--SG 943
VS R G + + G+ GAG+T L+ L G G + EG++ I+G P + A+ +G
Sbjct: 279 VSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKF-EGNVFINGKPVDIRNPAQAIRAG 337
Query: 944 YC---EQNDIHS--PYVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELVELKSLND 996
E H P + V +++ S +D + ++ +++K+ +
Sbjct: 338 IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP 397
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
LP + LS +++ +A L+ NP ++ +DEPT G+D A + + + G
Sbjct: 398 F---LP-IGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEG 453
Query: 1057 RTVV 1060
++
Sbjct: 454 VAII 457
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 41/156 (26%), Positives = 72/156 (46%), Gaps = 14/156 (8%)
Query: 982 VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041
V ++L+E+ L+ + + LS +++R+ +A +L P + DEPT LD +
Sbjct: 146 VGRAVDLIEMVQLSHRITHI--ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQT 203
Query: 1042 AAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLI 1100
A +V + V +G ++V T H P + I + D+ + L+ G + G +++
Sbjct: 204 AKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWLEN-GEIKEEG----TPDEVV 257
Query: 1101 EYF-EAVPGVPKIKEAY--NPATWMLEVSN--ISVE 1131
F E V V K E P + VS ISV+
Sbjct: 258 AVFMEGVSEVEKECEVEVGEPIIKVRNVSKRYISVD 293
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-05
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 37/227 (16%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE---GDIKISGYPKNQETFA 939
+VS + G + ++G SGAGKTTL ++AG T G + GD + +
Sbjct: 302 NVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRG 361
Query: 940 RVSGYC----EQNDIHSPYVTVYESLLYSAWLRLSSD------VDTKKRKMFVDEVMELV 989
R Y ++ D++ P+ TV ++L + L L + V T K F +E E +
Sbjct: 362 RAKRYIGILHQEYDLY-PHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEI 420
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049
L D LS +R R+ +A L+ P I+ +DEPT +D I V
Sbjct: 421 -LDKYPDE---------LSEGERHRVALAQVLIKEPRIVILDEPTGTMD----PITKVDV 466
Query: 1050 RNTV-----DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+++ + +T + H +D + L R G+++ G
Sbjct: 467 THSILKAREEMEQTFIIVSH--DMDFVLDVCDRAALMRDGKIVKIGD 511
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 46/174 (26%), Positives = 67/174 (38%), Gaps = 56/174 (32%)
Query: 874 GVGEDRLQLLHSVSGV-F--RPGVLTALMGVSGAGKTTLMDVLAG--RKTGG--YIEGDI 926
G G + + + +V GV F + G L+G SG GK+TL ++ G T G EG
Sbjct: 17 GKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK- 75
Query: 927 KISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
DI + ++R+ + V+
Sbjct: 76 ----------------------DIT--------------------KLSKEERR---ERVL 90
Query: 987 ELVELKSLNDSMVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
EL+E L + + P LS QR+R+ IA L NP +I DEP S LD
Sbjct: 91 ELLEKVGLPEEFLYRYP--HELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142
|
Length = 268 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 48/187 (25%), Positives = 82/187 (43%), Gaps = 24/187 (12%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKT 918
E++ D +L +V+ +TAL+G SG GK+T + D++ G +
Sbjct: 2 YRIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 919 GGYIEGDIKISGYPKNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
G+I D Y + + G Q P ++++++ Y LR+ + D
Sbjct: 62 EGHIYLDGV-DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGEDDED 117
Query: 977 KRKMFVDEVMELVEL-----KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
+ V+E ++ L L+ S +GL G Q++RL IA + +P +I MD
Sbjct: 118 FIEERVEESLKAAALWDEVKDKLDKSALGLSG------GQQQRLCIARTIAVSPEVILMD 171
Query: 1032 EPTSGLD 1038
EP S LD
Sbjct: 172 EPCSALD 178
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 153 LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 211
|
Length = 257 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 32/192 (16%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--NQ 935
D ++L VS +TA++G SG GK+T + L +E ++++ G + NQ
Sbjct: 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQ 74
Query: 936 ETFAR---VSGYCEQNDIHSPY-----VTVYESLLYS----AW---LRLSSDVDTK-KRK 979
+ R ++ Q + P ++VY+++ Y W L + V++ K
Sbjct: 75 NIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDA 134
Query: 980 MFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
DE+ + +L+ LS Q++RL IA L P ++ MDEP GLD
Sbjct: 135 DLWDEIKHKIHKSALD-----------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDP 183
Query: 1040 RAAAIVMRTVRN 1051
A+ V +++
Sbjct: 184 IASMKVESLIQS 195
|
Length = 261 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 44/173 (25%), Positives = 71/173 (41%), Gaps = 13/173 (7%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH 951
G + G +GAGKTTL+ VLAG G I+I G + +R Y
Sbjct: 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVE--SGQIQIDGKTATRGDRSRFMAYLGHLPGL 93
Query: 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011
++ E+L + L ++ K + +V L D++ V LS Q
Sbjct: 94 KADLSTLENLHFLCGLH------GRRAKQMPGSALAIVGLAGYEDTL-----VRQLSAGQ 142
Query: 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
+KRL +A ++ + +DEP + LD +V R + + G + T H
Sbjct: 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 2e-05
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 40/211 (18%)
Query: 862 YFVDMPAEMKTEGV----GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA--- 914
Y D A++ E + G+D L VS +TAL+G SG GK+T + L
Sbjct: 38 YEFDGDAKLSVEDLDVYYGDDHA--LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95
Query: 915 GRKTGGYIEGDIKISGYPKNQETFARVS-----GYCEQNDIHSPYVTVYESLLYSAWLRL 969
R I+G +++ G Q+ V G Q+ P ++ E++ Y R
Sbjct: 96 DRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGP--RK 152
Query: 970 SSDVDTKKRKMFV-----DEVMELVE--LKS----------LNDSMVGLPGVSGLSTEQR 1012
D++T + D ELVE L+ L+D+ +GL G Q+
Sbjct: 153 HGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG------GQQ 206
Query: 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+RL IA L +P +I MDEP S LD A +
Sbjct: 207 QRLCIARCLAVDPEVILMDEPASALDPIATS 237
|
Length = 305 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 2e-05
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 27/199 (13%)
Query: 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQND 949
RPG + G SGAGKT+L+ LAG + G I P + + Q
Sbjct: 416 VRPGERLLITGESGAGKTSLLRALAG--LWPWGSGRI---SMPADSALL-----FLPQ-- 463
Query: 950 IHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL-PGVS 1005
PY+ T+ E+L Y + D + V+ V L L + +
Sbjct: 464 --RPYLPQGTLREALCYP---NAAPDFSDA----ELVAVLHKVGLGDLAERLDEEDRWDR 514
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065
LS +++RL A L+ P +F+DE TS LD + + ++ + TV+ H+
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHR 573
Query: 1066 PSIDIFEAFDELLLLKRGG 1084
P++ F + +L LL G
Sbjct: 574 PTLWNFHS-RQLELLDDAG 591
|
Length = 604 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-05
Identities = 60/198 (30%), Positives = 97/198 (48%), Gaps = 23/198 (11%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA--RVSGYCEQNDIHSPY 954
AL+G +G+GK+TL +L G EG+I++ G P + + + R Q D P
Sbjct: 371 ALVGHTGSGKSTLASLLMGYYP--LTEGEIRLDGRPLSSLSHSVLRQGVAMVQQD---P- 424
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-GLPGVSG-----LS 1008
V + ++ L A + L D+ ++ V + +E V+L L S+ GL G LS
Sbjct: 425 VVLADTFL--ANVTLGRDISEEQ----VWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
Q++ L +A LV P I+ +DE T+ +D+ + + + V T+V H+ S
Sbjct: 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLST 537
Query: 1069 DIFEAFDELLLLKRGGRV 1086
I EA D +L+L RG V
Sbjct: 538 -IVEA-DTILVLHRGQAV 553
|
Length = 592 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 2e-05
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 33/155 (21%)
Query: 896 TALMGVSGAGKTTLMDVLAG--RKTGGYI----------EGDIKISGYPKNQETFARVSG 943
TA+ G SGAGKT+L++ ++G R G I E I + P + R G
Sbjct: 27 TAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL---PPEK----RRIG 79
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
Y Q+ P+ V +L Y K D+++ L+ ++ L D P
Sbjct: 80 YVFQDARLFPHYKVRGNLRYGM---------AKSMVAQFDKIVALLGIEPLLDR---YP- 126
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
LS +++R+ I L+ P ++ MDEP + LD
Sbjct: 127 -GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 49/220 (22%), Positives = 81/220 (36%), Gaps = 61/220 (27%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ L D+S V P + +L+GP GAGKTTLM + GK G++ + G
Sbjct: 19 KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ---EGEVLFDGDT------- 68
Query: 245 RTCAYISQHDLH----HG------------EMTVRETLDFSGRCLGVGTRYELLAELSRR 288
+++ H G +TVRE L+ L + + A L R
Sbjct: 69 ----DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLE-----LALNRDKSVFASLFAR 119
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
+ + D +L +GL D + +S GQK
Sbjct: 120 LRAE-------------------ERRR--IDELLATIGLGDERDRLAAL-----LSHGQK 153
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388
+ + G +L +L +DE G+ + T + + LK +
Sbjct: 154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL 193
|
Length = 249 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 58/266 (21%), Positives = 110/266 (41%), Gaps = 67/266 (25%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG--------HELN 239
+DVS + P + ++G G+GKTTL+ ++G+L D +G +TY + ++
Sbjct: 23 RDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTMS 79
Query: 240 E----FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY--ELLAELSRREKQAG 293
E + + ++ Q+ M V + R + +G R+ + AE ++
Sbjct: 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVE 139
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
I D ID ++ R SGG ++R+
Sbjct: 140 IDLD-RID------------------------------------DLPRTFSGGMQQRLQI 162
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-- 411
LV +++MDE + GLD S ++ L+ +V L + +++ T+DL
Sbjct: 163 ARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIV-------THDLAVA 215
Query: 412 ----DDIILLSEGQIVYQGPRDNVLE 433
D ++++ +GQ+V G D VL+
Sbjct: 216 RLLADRLMVMKQGQVVESGLTDRVLD 241
|
Length = 258 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV L VL DE ++ LD +TT I + LK++ L +T I+ +
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT-ILLITH 199
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEH 437
+ D + ++S G+++ QG V E F H
Sbjct: 200 EMDVVKRICDCVAVISNGELIEQG---TVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 50/181 (27%), Positives = 67/181 (37%), Gaps = 45/181 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253
V L+ G GAGKTTL+ LAG L + SG+I G R AY+
Sbjct: 34 VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE---SGQIQIDGKTATRGDRSRFMAYLGHL 90
Query: 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQE 313
+++ E L F L RR KQ M A+A
Sbjct: 91 PGLKADLSTLENLHF------------LCGLHGRRAKQ------------MPGSALA--- 123
Query: 314 TSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGL 373
I+GL DT+V R +S GQKKR+ + + A + +DE L
Sbjct: 124 ----------IVGLAGYEDTLV-----RQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168
Query: 374 D 374
D
Sbjct: 169 D 169
|
Length = 214 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-05
Identities = 36/108 (33%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 984 EVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
+ + +E K D++VG G LS +R+RL IA L+ +P I+ +DE TS LD
Sbjct: 449 QAHDFIERKPDGYDTVVGERG-RQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507
Query: 1043 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
A V + + + GRT H+ S + A D +L+ GRV+ +G
Sbjct: 508 AKVKAAL-DELMKGRTTFIIAHRLST-VRNA-DRILVFDN-GRVVESG 551
|
Length = 588 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 3e-05
Identities = 43/164 (26%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYI--EGDIKISGYPKNQET 937
+L+++S R G + G SG GK+TL+ ++A T G + EG+ IS E
Sbjct: 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE-DISTLKP--EI 78
Query: 938 FARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
+ + YC Q +P + TVY++L++ +R +F+D++ +L
Sbjct: 79 YRQQVSYCAQ----TPTLFGDTVYDNLIFPWQIR----NQQPDPAIFLDDLERF----AL 126
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D+++ ++ LS +++R+++ L P ++ +DE TS LD
Sbjct: 127 PDTILTKN-IAELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169
|
Length = 225 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-05
Identities = 72/310 (23%), Positives = 109/310 (35%), Gaps = 85/310 (27%)
Query: 802 SNSTVIE--EDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDN 859
S S V+E + G AS H EG + A + R P T D
Sbjct: 618 SPSVVVEDTDYGSPSSASRHIVEG-------GTGGGHEATPTSERS---AKTPKMKTDD- 666
Query: 860 MSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG 919
+F P LL VS G LT ++G +G+GK+TL+ L
Sbjct: 667 --FFELEPKV------------LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLS---- 708
Query: 920 GYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLY---SAWLRLSSDVDTK 976
Q +I V S+ Y AW+ + +
Sbjct: 709 ---------------------------QFEISEGRVWAERSIAYVPQQAWIM---NATVR 738
Query: 977 KRKMFVDE-----VMELVELKSLNDSMVGLPGVSGLSTE-----------QRKRLTIAVE 1020
+F DE + + V + L + L G GL TE Q+ R+++A
Sbjct: 739 GNILFFDEEDAARLADAVRVSQLEADLAQLGG--GLETEIGEKGVNLSGGQKARVSLARA 796
Query: 1021 LVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080
+ AN + +D+P S LDA V+ G+T V HQ + + D ++ L
Sbjct: 797 VYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVAL 854
Query: 1081 KRGGRVIYAG 1090
GRV ++G
Sbjct: 855 GD-GRVEFSG 863
|
Length = 1560 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-05
Identities = 44/197 (22%), Positives = 85/197 (43%), Gaps = 21/197 (10%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
++L ++ G + A+MG +G+GK+TL V+AG +EGDI G
Sbjct: 21 EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEE 80
Query: 941 VS------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKM-------FVDEVME 987
+ + Q I P V+ + +LRL+ + K + + F++ + E
Sbjct: 81 RAHLGIFLAF--QYPIEIPGVS------NADFLRLAYNSKRKFQGLPELDPLEFLEIINE 132
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
++L ++ S + G S ++KR I + + + +DE SGLD A I+
Sbjct: 133 KLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAE 192
Query: 1048 TVRNTVDTGRTVVCTIH 1064
+ + + +++ H
Sbjct: 193 GINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 3e-05
Identities = 32/112 (28%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKR 1014
+++YE++ + DV + +DE +E L + D+ VG G S LS Q++R
Sbjct: 1310 MSIYENIKFGKEDATREDVKRACKFAAIDEFIE--SLPNKYDTNVGPYGKS-LSGGQKQR 1366
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG-RTVVCTIHQ 1065
+ IA L+ P I+ +DE TS LD+ + ++ +T+ + D +T++ H+
Sbjct: 1367 IAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418
|
Length = 1466 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 4e-05
Identities = 44/221 (19%), Positives = 76/221 (34%), Gaps = 58/221 (26%)
Query: 158 TLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL 217
L NV+L + S L L +V+ + + L+GP G GK+TL+ +
Sbjct: 4 CLKNVSLRLPGSCL---------------LANVNFTIAKGEIVTLMGPSGCGKSTLLSWM 48
Query: 218 AGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV 275
G L +G++ L+ +P QR + Q L ++V + L F+
Sbjct: 49 IGALAGQFSCTGELWLNEQRLDM-LPAAQRQIGILFQDALLFPHLSVGQNLLFA------ 101
Query: 276 GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335
+ + +A A A + + L
Sbjct: 102 ------------------LPATLKGNARRNAANAALERSGL----------------DGA 127
Query: 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
+ +SGGQ+ RV L+ L +DE + LD +
Sbjct: 128 FHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVA 168
|
Length = 213 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 4e-05
Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ--RTCAYIS 251
V+P LLG GAGKTT L G SG T G + + + Y
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTV---TSGDATVAGKSILTNISDVHQNMGYCP 2018
Query: 252 QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAG 311
Q D +T RE L R GV P EI+
Sbjct: 2019 QFDAIDDLLTGREHLYLYARLRGV--------------------PAEEIEK--------- 2049
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
V ++ ++ LGL + AD + G SGG K++++T L+G ++ +DE +T
Sbjct: 2050 -----VANWSIQSLGLSLYADRLAGT-----YSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099
Query: 372 GLD 374
G+D
Sbjct: 2100 GMD 2102
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 4e-05
Identities = 67/281 (23%), Positives = 109/281 (38%), Gaps = 81/281 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LK ++ S +T L+G G GK+TL + L+G L G + + G
Sbjct: 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQG---------- 62
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF-- 303
+ LD+S R L L+ R++ A + DPE F
Sbjct: 63 ------------------KPLDYSKRGL-----------LALRQQVATVFQDPEQQIFYT 93
Query: 304 ---------MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG-----ISGGQKK 349
++ + V E + D L T+V + R +S GQKK
Sbjct: 94 DIDSDIAFSLRNLGVPEAEITRRVDEAL----------TLVDAQHFRHQPIQCLSHGQKK 143
Query: 350 RVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----HILDVTMIVALLQPAP 405
RV LV A L +DE + GLD + Q+ ++++V H++ + + L+
Sbjct: 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLI---- 199
Query: 406 ETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCP 443
Y++ D + +L +GQI+ G V E E G P
Sbjct: 200 --YEISDAVYVLRQGQILTHGAPGEVFACTEAMEQAGLTQP 238
|
Length = 271 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 32/162 (19%), Positives = 50/162 (30%), Gaps = 50/162 (30%)
Query: 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGEMTVRETL 266
+TL+ + G L SG I G + ++ + Q E+TVRE L
Sbjct: 1 STLLKLITGLLQPT---SGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326
F R + + + L+ +G
Sbjct: 58 FFGLR--------------------------------------DKEADARAEE-ALERVG 78
Query: 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368
L D + SGGQK+RV L+ +L +DE
Sbjct: 79 LPDFLDREPVGTL----SGGQKQRVAIARALLKKPKLLLLDE 116
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 5e-05
Identities = 63/248 (25%), Positives = 104/248 (41%), Gaps = 41/248 (16%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+L +++ +KP ++GP G+GK+TL KL + L + PQ
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLT-----KLLQRL---------------YTPQH 511
Query: 246 TCAYISQHDLHHGE-MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ DL + +R R +GV + +L S R+ A P + +
Sbjct: 512 GQVLVDGVDLAIADPAWLR-------RQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVI 564
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
A +AG D+ I L +T VG E +SGGQ++R+ LVG +L
Sbjct: 565 HAAKLAGAH-----DF---ISELPQGYNTEVG-EKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
DE ++ LD + I + ++++ V +I L T D II+L +GQI
Sbjct: 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLS----TVRACDRIIVLEKGQIAE 671
Query: 425 QGPRDNVL 432
G + +L
Sbjct: 672 SGRHEELL 679
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 33/127 (25%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 334 MVG-----DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM 388
MVG D M +SGGQ++RV L V+ DE+++ LD ++ ++++
Sbjct: 133 MVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRL 192
Query: 389 VHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGV 448
D+TM++ + + D + +G+IV QG D E F P+ +
Sbjct: 193 ASEHDLTMLLVTHEMG-FAREFADRVCFFDKGRIVEQGKPD---EIFRQ-----PKEERT 243
Query: 449 ADFLQEV 455
+FL +V
Sbjct: 244 REFLSKV 250
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 5e-05
Identities = 52/198 (26%), Positives = 82/198 (41%), Gaps = 26/198 (13%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE----GDIKISGY----- 931
Q L ++ G L+G SGAGK++L+ VL +E G + I+G
Sbjct: 16 QALFDITLDCPQGETLVLLGPSGAGKSSLLRVL------NLLEMPRSGTLNIAGNHFDFS 69
Query: 932 ----PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVME 987
K R G Q P++TV ++L+ A R+ + +
Sbjct: 70 KTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI-EAPCRVLGLSKDQALA----RAEK 124
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047
L+E L P LS Q++R+ IA L+ P ++ DEPT+ LD A ++
Sbjct: 125 LLERLRLKPYADRFP--LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVS 182
Query: 1048 TVRNTVDTGRTVVCTIHQ 1065
+R +TG T V H+
Sbjct: 183 IIRELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 5e-05
Identities = 49/188 (26%), Positives = 88/188 (46%), Gaps = 28/188 (14%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS 952
G LT ++G G GK++L+ + G +EG + S +++ +F E +
Sbjct: 27 GQLTMIVGQVGCGKSSLLLAILGEMQT--LEGKVHWSNKNESEPSF-------EATRSRN 77
Query: 953 PYVTVYESLLYSAWLRLSSDVD---------TKKRKMFVDEVMEL---VELKSLND-SMV 999
Y Y + WL L++ V+ K+R V + L ++L D + +
Sbjct: 78 RYSVAYAA--QKPWL-LNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEI 134
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT--VRNTVDTGR 1057
G G++ LS QR+R+ +A L N +I+F+D+P S LD + +M+ ++ D R
Sbjct: 135 GERGIN-LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKR 193
Query: 1058 TVVCTIHQ 1065
T+V H+
Sbjct: 194 TLVLVTHK 201
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 25/166 (15%)
Query: 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVS 942
VS R G A++G +G+GK+TL +LAG T G +I I+ +P + ++ S
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG----EILINDHPLHFGDYSFRS 86
Query: 943 G-----YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL----KS 993
+ + N +P + + + LRL++D++ ++R+ + E + +V L +
Sbjct: 87 KRIRMIFQDPNTSLNPRLRI--GQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHAN 144
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
M L+ Q++R+ +A L+ P II DE + LD
Sbjct: 145 YYPHM--------LAPGQKQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 5e-05
Identities = 34/139 (24%), Positives = 71/139 (51%), Gaps = 25/139 (17%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV +L ++ +DE ++ LD + QI K ++++ ++T+I
Sbjct: 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISI--- 200
Query: 403 PAPETYDL-----FDDIILLSEGQIVYQG-PRD--NVLEFFEHMGFKCP---------ER 445
T+D+ D +++L +G+++ QG P + + +E + +G P +
Sbjct: 201 ----THDIDEANMADQVLVLDDGKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKE 256
Query: 446 KGVADFLQEVTSKKDQEQY 464
KG++ QE+ +++ QY
Sbjct: 257 KGIS-VPQEINTEEKLVQY 274
|
Length = 282 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 56/208 (26%), Positives = 92/208 (44%), Gaps = 12/208 (5%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCE---- 946
RPG + A+MG +G+GK+TL LAGR+ G ++ G K+ + E
Sbjct: 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG--KDLLELSPEDRAGEGIFM 82
Query: 947 --QNDIHSPYVTVYESLLYSAW--LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
Q + P V+ + L +A +R + R F D + E + L + + ++
Sbjct: 83 AFQYPVEIPGVS-NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRS 141
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
G S ++KR I V P + +DE SGLD A IV V + D R+ +
Sbjct: 142 VNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIV 201
Query: 1063 IHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
H I + D + +L + GR++ +G
Sbjct: 202 THYQRILDYIKPDYVHVLYQ-GRIVKSG 228
|
Length = 248 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 5e-05
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L + G + AL+G +GAGK+TLM ++AG G ++I G P + T A+
Sbjct: 27 LKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD--SGTLEIGGNPCARLTPAKAH 84
Query: 943 GY----CEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
Q + P ++V E++L+ L + ++ + +L L +L +
Sbjct: 85 QLGIYLVPQEPLLFPNLSVKENILF----GLPKRQASMQK------MKQL--LAALGCQL 132
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
L R+ + I L+ + I+ +DEPT+ L
Sbjct: 133 DLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171
|
Length = 510 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 53/236 (22%), Positives = 91/236 (38%), Gaps = 33/236 (13%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQET 937
L+ L +VS G A++G +G+GKTT ++ L G IE K KN++
Sbjct: 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDE---KNKKK 76
Query: 938 FARVSGYCEQNDIHSPYV--------------TVY---ESLLYSAWLRLSSDVDTKKRKM 980
E+ I V+ E L+ + D+ M
Sbjct: 77 TKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ--TIEKDIIFGPVSM 134
Query: 981 FVDEVMELVELKSLNDSMVGLP------GVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034
V + E + + +VGL LS Q++R+ +A L P + DEPT
Sbjct: 135 GVSK-EEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPT 193
Query: 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+GLD + ++ N G+T++ H +D + + + + G++I G
Sbjct: 194 AGLDPQGVKEILEIFDNLNKQGKTIILVTH--DLDNVLEWTKRTIFFKDGKIIKDG 247
|
Length = 305 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 6e-05
Identities = 50/235 (21%), Positives = 96/235 (40%), Gaps = 29/235 (12%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQETFARVSGYCEQND 949
G L+G +G+GK+TL+ L G +G I + I+ + G Q
Sbjct: 33 GEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92
Query: 950 IHSPYV-TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-------KSLNDSMVGL 1001
+ + T+ + + + S+ + + R V M +V L KS +
Sbjct: 93 EYQLFEETIEKDIAFGPINLGLSEEEIENR---VKRAMNIVGLDYEDYKDKSPFE----- 144
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVV 1060
LS Q++R+ IA + P I+ +DEPT+GLD + ++ ++ T++
Sbjct: 145 -----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTII 199
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP-GVPKIKE 1114
H S++ + +++ G+ G E K +E E++ VP++
Sbjct: 200 LVSH--SMEDVAKLADRIIVMNKGKCELQGTP-REVFKEVETLESIGLAVPQVTY 251
|
Length = 287 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 47/228 (20%), Positives = 88/228 (38%), Gaps = 44/228 (19%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHG 258
T ++GP G+GK+TL+ +A G + SG++ G ++ P R + + Q +
Sbjct: 27 TAIVGPSGSGKSTLLNLIA---GFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFA 83
Query: 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVT 318
+TV + + LG+ +L AE R+ + K +
Sbjct: 84 HLTVEQNVG-----LGLSPGLKLTAE--DRQAIEVALARVGLAGLEKRLP---------- 126
Query: 319 DYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
+SGG+++RV +LV VL +DE LD +
Sbjct: 127 ----------------------GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALR 164
Query: 379 FQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
++ + + +T+++ QP + L ++ L G+I QG
Sbjct: 165 AEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 7e-05
Identities = 57/244 (23%), Positives = 101/244 (41%), Gaps = 53/244 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTT---LMLALAGKLGKDLRASGKITYCGHELNEFV 242
+L+DVS + P +T L+GP G+GK+T L+ G G++ G ++++
Sbjct: 29 VLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG------GQVLLDGKPISQY- 81
Query: 243 PQRTCAYISQHDLHHGEMTV--RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+H H ++++ +E + F+ S ++ A
Sbjct: 82 ---------EHKYLHSKVSLVGQEPVLFAR---------------SLQDNIAYGLQSCSF 117
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEMLV 358
+ +A A + I L DT VG+ +G +SGGQK+RV L+
Sbjct: 118 ECVKEAAQKAHAHSF--------ISELASGYDTEVGE---KGSQLSGGQKQRVAIARALI 166
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
VL +DE ++ LD+ + Q+ + L V +I L T + D I++L
Sbjct: 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS----TVERADQILVLD 222
Query: 419 EGQI 422
G+I
Sbjct: 223 GGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 7e-05
Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 4/82 (4%)
Query: 970 SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029
S VD K+ + D V L + +++VG S LS Q++R++IA ++ NP I+
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKY---ETLVG-SNASKLSGGQKQRISIARAIIRNPKILI 602
Query: 1030 MDEPTSGLDARAAAIVMRTVRN 1051
+DE TS LD ++ +V +T+ N
Sbjct: 603 LDEATSSLDNKSEYLVQKTINN 624
|
Length = 1466 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 7e-05
Identities = 67/268 (25%), Positives = 107/268 (39%), Gaps = 82/268 (30%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA----SGKITYCGHELNEF 241
+LK +S +K LLG G GK+TL+ L RA G+I G + ++
Sbjct: 355 VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-------RAWDPQQGEILLNGQPIADY 407
Query: 242 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
V QR ++ T+R+ L LLA
Sbjct: 408 SEAALRQAISVVSQRV--HLFSA-------TLRDNL--------------LLA------- 437
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
P+ +A ++ + G E L D GL+ +G E R +SGG+++R
Sbjct: 438 ----APNASDEALIEVLQQVGLEKLLEDD-----KGLN----AWLG-EGGRQLSGGEQRR 483
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV------ALLQPA 404
+ L+ A +L +DE + GLD+ T QI + L + H + T+++ L Q
Sbjct: 484 LGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE--HAQNKTVLMITHRLTGLEQ-- 539
Query: 405 PETYDLFDDIILLSEGQIVYQGPRDNVL 432
FD I ++ GQI+ QG +L
Sbjct: 540 ------FDRICVMDNGQIIEQGTHQELL 561
|
Length = 574 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-05
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 34/193 (17%)
Query: 866 MPAEMKTEGVG--EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGG 920
M ++K GV + Q+L +++ F +TA++G SG GK+TL+ L +G
Sbjct: 1 MDPKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA 60
Query: 921 YIEGDIKISG---YPKNQETF---ARVSGYCEQNDIHSPY-VTVYESLLY-------SAW 966
+EG + + Y N + RV +Q + P+ ++++++ + +A
Sbjct: 61 RLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN---PFPKSIFDNVAFGPRMLGTTAQ 117
Query: 967 LRLSSDVDTKKRKMFV-DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025
RL V+ R+ + DEV + +L+ S + L G Q++RL IA L P
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKD-----NLHKSGLALSG------GQQQRLCIARVLAIEP 166
Query: 1026 SIIFMDEPTSGLD 1038
+I MDEP S LD
Sbjct: 167 EVILMDEPCSALD 179
|
Length = 251 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 7e-05
Identities = 51/184 (27%), Positives = 80/184 (43%), Gaps = 44/184 (23%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIK-ISGYPKNQ- 935
L +V+ V R + +L+G +GAGKTT+ + L G + TGG I + I G P +Q
Sbjct: 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQI 77
Query: 936 ------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDV---------------D 974
TF V + E +TV E+LL + +L + + +
Sbjct: 78 ARMGVVRTFQHVRLFRE--------MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESE 129
Query: 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034
R E + L+E N L+ Q++RL IA +V P I+ +DEP
Sbjct: 130 ALDRAATWLERVGLLEHA--NRQ------AGNLAYGQQRRLEIARCMVTQPEILMLDEPA 181
Query: 1035 SGLD 1038
+GL+
Sbjct: 182 AGLN 185
|
Length = 255 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 8e-05
Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 27/158 (17%)
Query: 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQND 949
G TA++G +G GK+TL+ L+ T G + + G + AR G QN
Sbjct: 33 GHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEHIQHYASKEVARRIGLLAQNA 90
Query: 950 IHSPYVTVYESL---------LYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+TV E + L++ W + D + + M + L
Sbjct: 91 TTPGDITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHL-----------A 137
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
V LS QR+R IA+ L +I+ +DEPT+ LD
Sbjct: 138 DQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175
|
Length = 265 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 58/214 (27%), Positives = 90/214 (42%), Gaps = 30/214 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGD------IKISGYPKNQE 936
L+ +S G TAL+G +G+GK+T+ + G + D I + G +
Sbjct: 23 LNDISFSIPRGSWTALIGHNGSGKSTI-----SKLINGLLLPDDNPNSKITVDGITLTAK 77
Query: 937 TFARVS---GYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
T + G QN D TV + + + R V + V +V+ V +
Sbjct: 78 TVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGML 134
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN- 1051
DS P + LS Q++R+ IA L P II +DE TS LD +++ +R
Sbjct: 135 DYIDSE---P--ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKL 189
Query: 1052 TVDTGRTVVCTIHQPSIDIFEA--FDELLLLKRG 1083
TV+ H DI EA D++L+L G
Sbjct: 190 KKKNNLTVISITH----DIDEANMADQVLVLDDG 219
|
Length = 282 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 9e-05
Identities = 57/221 (25%), Positives = 102/221 (46%), Gaps = 28/221 (12%)
Query: 874 GVGEDRLQ--LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG- 930
GV + ++ +L +++ +PG + A++G SGAGKTTL+ ++ G + G E SG
Sbjct: 388 GVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK 447
Query: 931 --YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
PKN + Y + VT+ E L + D++ +E+
Sbjct: 448 VEVPKNTVSALIPGEYEPEFG----EVTILEHLR-----SKTGDLNAA---------VEI 489
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L+D+++ S LST Q++R +A L P+++ +DE + LD A V R
Sbjct: 490 LNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK 549
Query: 1049 VRNTV-DTGRTVVCTIHQPSIDIFEAF--DELLLLKRGGRV 1086
+ + G T++ H+P ++ A D L+L+ G
Sbjct: 550 ISELAREAGITLIVVTHRP--EVGNALRPDTLILVGYGKVP 588
|
Length = 593 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 1e-04
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 9/104 (8%)
Query: 332 DTMVGDEMRRG--ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
DT+VG+ RG +SGG+K+RV ++ +L +DE ++ LD+ T +I L+ +
Sbjct: 128 DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS 184
Query: 390 HILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+I L T D II+L +G+IV +G + +L
Sbjct: 185 KGRTTIVIAHRLS----TIVNADKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 52/261 (19%), Positives = 98/261 (37%), Gaps = 46/261 (17%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNE---- 240
+K+V+ V+ + L+GP G GKTT + A+ L R +G+I G ++
Sbjct: 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVD 79
Query: 241 -FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R + Q M+V + + + G+ R L+ R + A + E
Sbjct: 80 PVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD--E 137
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+ +K A G+SGGQ++R+ L
Sbjct: 138 VKDRLKTPAT--------------------------------GLSGGQQQRLCIARALAV 165
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFDDI 414
+L MDE ++ LD ++T +I + + + + ++ + A D L D+
Sbjct: 166 EPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDL 225
Query: 415 ILLSEGQIVYQGPRDNVLEFF 435
+ ++ PRD E +
Sbjct: 226 VEHGPTDQLFTNPRDERTEAY 246
|
Length = 252 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-04
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
ILK V+ +K + L+GP G+GK+TL + G ++ G+I + G ++ +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-TEGEILFKGEDITD 68
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-04
Identities = 64/253 (25%), Positives = 103/253 (40%), Gaps = 65/253 (25%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEFV 242
L ++ V+P L+GP GAGK+TL L LR SG+I G +L +
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLL-------LRFYDPQSGRILLDGVDLRQLD 408
Query: 243 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
P R + D +V E + + GR PD
Sbjct: 409 PAELRARMALVPQDPVLFAASVMENIRY-GR------------------------PDAT- 442
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLV 358
D ++A A A I L DT +G+ RG+ SGGQ++R+ ++
Sbjct: 443 DEEVEAAARAAHAHEF-------ISALPEGYDTYLGE---RGVTLSGGQRQRIAIARAIL 492
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQ-MVHILDVTMIVA----LLQPAPETYDLFDD 413
A +L +DE ++ LD+ + + + L+ M T+I+A + A D
Sbjct: 493 KDAPILLLDEATSALDAESEQLVQQALETLMKG--RTTLIIAHRLATVLKA-------DR 543
Query: 414 IILLSEGQIVYQG 426
I+++ +G+IV QG
Sbjct: 544 IVVMDQGRIVAQG 556
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 6/52 (11%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP 932
L VS R G + AL+G +GAGK+TLM +L+G + G+I + G
Sbjct: 16 LDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD----SGEILVDGKE 63
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 1e-04
Identities = 50/228 (21%), Positives = 90/228 (39%), Gaps = 56/228 (24%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+IL+ VS + S++T ++GP G GK+T + L + +NE
Sbjct: 21 KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL------------------NRMNEL--- 59
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG-IKPDPEI--- 300
E+ V ++F + + YE L+R +Q + P P +
Sbjct: 60 ------------ESEVRVEGRVEFFNQNI-----YERRVNLNRLRRQVSMVHPKPNLFPM 102
Query: 301 ---DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI-------SGGQKKR 350
D V + G L D +++ D + DE++ I SGGQ++R
Sbjct: 103 SVYDNVAYGVKIVGWRPKLEIDDIVE----SALKDADLWDEIKHKIHKSALDLSGGQQQR 158
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
+ L VL MDE GLD + ++ ++ + ++TM++
Sbjct: 159 LCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206
|
Length = 261 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 49/209 (23%)
Query: 173 LLHL--VPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
LL L V +IL ++S ++ L+ GP G GK+TL+ +A + SG
Sbjct: 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT---SGT 63
Query: 231 ITYCGHELNEFVPQR---TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
+ + G +++ P+ +Y +Q G+ TV + L F +++
Sbjct: 64 LLFEGEDISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---------WQI------ 107
Query: 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347
R +Q PDP F+ + IL +I +SGG+
Sbjct: 108 RNQQ----PDP--AIFLDDLERFALP--------DTILTKNIAE-----------LSGGE 142
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSS 376
K+R++ L VL +DEI++ LD S
Sbjct: 143 KQRISLIRNLQFMPKVLLLDEITSALDES 171
|
Length = 225 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 1e-04
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 28/165 (16%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIK-ISGYPKNQETFARVSGYCE 946
+TA++G SG GK+T + D++ T G + D + I G ++ + G
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVF 126
Query: 947 QNDIHSPYVTVYESLLYSAWL-------RLSSDVDTKKRKMFV-DEVMELVELKSLNDSM 998
Q P ++++++ Y L +L V+ RK + DEV + ++ +L
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---- 181
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
GLS Q++RL +A L P I+ +DEPTS LD +A A
Sbjct: 182 -------GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATA 219
|
Length = 286 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 1e-04
Identities = 40/166 (24%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTL---MDVLAGRKTGGYIEGDIKISGYPKNQET 937
L +++ +TA++G SG GK+T ++++ + G++ +G +
Sbjct: 26 HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85
Query: 938 FARVS-----GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
V G Q P ++++++ Y R+ + KK + V++ ++ V L
Sbjct: 86 VDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALW 142
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+ + LS Q++RL IA L NP ++ MDEPTS LD
Sbjct: 143 DEVKDRLHTQAL-SLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187
|
Length = 259 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 1e-04
Identities = 60/283 (21%), Positives = 111/283 (39%), Gaps = 63/283 (22%)
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF 241
R+ +L D++ +K +++T +GP G GK+T + L ++LN+
Sbjct: 93 RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNL------------------NQLNDL 134
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI--KPDPE 299
+ + H GE+ LG TR + ++ L R + + KP P
Sbjct: 135 IEGTS---------HEGEIYF----------LGTNTRSKKISSLELRTRIGMVFQKPTPF 175
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR-------RGISGGQKKRVT 352
+ VA + + +L+ + + DE++ +SGGQ++R+
Sbjct: 176 EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLC 235
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKF---LKQMVHILDVTMIVALLQPAPETYD 409
+ VL MDE ++ LD T +I + LK+ I+ VT +A Q
Sbjct: 236 IARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQ------R 289
Query: 410 LFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ D+ + +G I G + F P+ K D++
Sbjct: 290 ISDETVFFYQGWIEEAGETKTI--------FIHPKNKRTKDYI 324
|
Length = 329 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 1e-04
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQP 1066
LS Q +R+ IA L P I+ +DEPT+GLD + +M + +G T+V H
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLM 205
Query: 1067 SIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP-GVPKIKE 1114
D+ D + +L++G V+ P + + +++ E GVPKI +
Sbjct: 206 D-DVANYADFVYVLEKGKLVLSGKP--KDIFQDVDFLEEKQLGVPKITK 251
|
Length = 280 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 50/203 (24%), Positives = 84/203 (41%), Gaps = 24/203 (11%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVL-------AGRKTGGYIEGDIKISGY 931
RL +L +VS G AL G SGAGK+TL+ L +GR + + ++
Sbjct: 20 RLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQA 79
Query: 932 PKNQETFARVS--GYCEQNDIHSPYVT----VYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+ R GY Q P V+ V E LL R ++
Sbjct: 80 SPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA----------RA 129
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
EL+ ++ + + LP + S +++R+ IA +A+ I+ +DEPT+ LDA +V
Sbjct: 130 RELLARLNIPERLWHLPP-ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSI 1068
+ + G ++ H +
Sbjct: 189 VELIAEAKARGAALIGIFHDEEV 211
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 40/165 (24%), Positives = 67/165 (40%), Gaps = 27/165 (16%)
Query: 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETFARVSGYC 945
G + ++G +G GKTT + +LAG G IE ++ Y K Q A G
Sbjct: 20 GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSY-KPQYIKADYEG-- 76
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
TV + LL S + F E+ + ++++ + D V
Sbjct: 77 ----------TVRD-LLSSITKDFYTH------PYFKTEIAKPLQIEQILDREV-----P 114
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
LS + +R+ IA L + I +DEP++ LD + + +R
Sbjct: 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIR 159
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-04
Identities = 48/187 (25%), Positives = 72/187 (38%), Gaps = 54/187 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+ + + F +TAL+G SG+GK+T + L + I+ AR
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSL--NRMNDTIDI--------------AR 77
Query: 941 VSG--YCEQNDIHSPYVTVYE-----------------SLLYSAWLRLSSDVDTKKRKMF 981
V+G DI+ + VYE S+ + L K K
Sbjct: 78 VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERA--GVKDKKV 135
Query: 982 VDEVMELVELK----------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
+DE++E LK L+ S + L G Q++RL IA + P I+ MD
Sbjct: 136 LDEIVE-TSLKQAALWDQVKDDLHKSALTLSG------GQQQRLCIARAIAVKPDILLMD 188
Query: 1032 EPTSGLD 1038
EP S LD
Sbjct: 189 EPASALD 195
|
Length = 267 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 45/215 (20%), Positives = 79/215 (36%), Gaps = 44/215 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V +L+D++ V+ +LGP G GK+TL+ +AG SG++ G +
Sbjct: 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVTG-- 69
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
P Y+ Q D +TV + + G S+ E +
Sbjct: 70 PGPDIGYVFQEDALLPWLTVLDNVALGLELRGK----------SKAEARE------RAKE 113
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
++ V +AG E D+ +SGG ++RV L
Sbjct: 114 LLELVGLAGFE-----------------------DKYPHQLSGGMRQRVAIARALATRPK 150
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
+L +DE LD+ T ++ L ++ T++
Sbjct: 151 LLLLDEPFGALDALTREELQDELLRLWEETRKTVL 185
|
Length = 248 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-04
Identities = 72/266 (27%), Positives = 105/266 (39%), Gaps = 78/266 (29%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
V+ L VS V+P + LLG GAGK+TLM L+G D SG+I G + F
Sbjct: 21 VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDG-KPVAF-- 74
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYE---LLAELS-------RREKQAG 293
+ R+ L G+ T ++ L+ LS RE
Sbjct: 75 ----------------SSPRDALA-----AGIATVHQELSLVPNLSVAENIFLGREPT-- 111
Query: 294 IKPDPEID-AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
+ ID M+ A +L LGLDI DT+VGD +S Q++ V
Sbjct: 112 -RRFGLIDRKAMRRRARE----------LLARLGLDIDPDTLVGD-----LSIAQRQMVE 155
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTT---FQICKFLKQ----MV---HILDVTMIVALLQ 402
L A VL +DE + L T F + + LK ++ H LD
Sbjct: 156 IARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD--------- 206
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPR 428
E +++ D I +L +G++V P
Sbjct: 207 ---EVFEIADRITVLRDGRVVGTRPT 229
|
Length = 500 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 38/178 (21%), Positives = 57/178 (32%), Gaps = 50/178 (28%)
Query: 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLH 256
+ GP G+GKTTL+ LAG +G++ G L+ R Y+
Sbjct: 28 ALQVTGPNGSGKTTLLRILAGLSPPL---AGRVLLNGGPLDFQRDSIARGLLYLGHAPGI 84
Query: 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316
++V E L F E LA V + G E
Sbjct: 85 KTTLSVLENLRFWHADHSDEQVEEALAR----------------------VGLNGFE--- 119
Query: 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLD 374
D + S GQ++RV +L+ + +DE +T LD
Sbjct: 120 -----------DRPVAQL---------SAGQQRRVALARLLLSGRPLWILDEPTTALD 157
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG--KLGKDLRASGKITYCGHELNEFVP 243
+LKD+S +KP L+ GP G GK++L ALAG G SG+I E F+P
Sbjct: 16 LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWG-----SGRIGMPEGEDLLFLP 70
Query: 244 QR 245
QR
Sbjct: 71 QR 72
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
P + L++GPPG+GKTTL ALA +LG
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPP 29
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 2e-04
Identities = 53/192 (27%), Positives = 81/192 (42%), Gaps = 14/192 (7%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISG---YPKN 934
Q L +VS +TAL+G SG GK+T + L IEG + I G Y +
Sbjct: 26 QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85
Query: 935 QET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ + G Q P +++Y+++ Y + + K V+ + L
Sbjct: 86 VDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALW 141
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ P +S LS Q++RL IA L P II DEPTS LD + A + + N
Sbjct: 142 DETSDRLKSPALS-LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN- 199
Query: 1053 VDTGRTVVCTIH 1064
+ T+V H
Sbjct: 200 LKKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+L DVS + +T ++GP GAGK+TL+ ++ L KD SG+IT G EL +
Sbjct: 15 VVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKD---SGEITIDGLELTSTPSK 71
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGR 271
+ + + Q + + +TVR+ + F GR
Sbjct: 72 ELAKKLSILKQENHINSRLTVRDLVGF-GR 100
|
Length = 252 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-04
Identities = 65/272 (23%), Positives = 105/272 (38%), Gaps = 54/272 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--- 243
+ +++ + +L+GP G+GKTT M + + SG+I G ++ E P
Sbjct: 17 VNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVEL 73
Query: 244 QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELS-RREKQAGIKPDPEIDA 302
+R Y+ Q MTV E + +LL + ++A
Sbjct: 74 RRKIGYVIQQIGLFPHMTVEEN---------IALVPKLLKWPKEKIRERA---------- 114
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
D +L ++GLD D +SGGQ++RV L
Sbjct: 115 ----------------DELLALVGLD---PAEFADRYPHELSGGQQQRVGVARALAADPP 155
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L MDE LD T Q+ + K++ L T IV + E + L D I ++ G+I
Sbjct: 156 LLLMDEPFGALDPITRDQLQEEFKRLQQELGKT-IVFVTHDIDEAFRLADRIAIMKNGEI 214
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454
V G D +L + P VA+F+
Sbjct: 215 VQVGTPDEIL--------RSPANDFVAEFVGA 238
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 51/233 (21%), Positives = 99/233 (42%), Gaps = 49/233 (21%)
Query: 174 LHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKI 231
L + +KK++ L VS P+ +T L+GP G+GK+TL+ ++ L ++ +G I
Sbjct: 11 LSVYYNKKKA---LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 232 TYCGHELNEFVPQRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285
Y GH N + P+ + + + M++ E + + R G+ + L +
Sbjct: 68 VYNGH--NIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAV 125
Query: 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISG 345
+ K A I + + D D+ +G +SG
Sbjct: 126 EKSLKGASIWDEVK----------------------------DRLHDSALG------LSG 151
Query: 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
GQ++RV +L + ++ +DE ++ LD + +I + L + D TM++
Sbjct: 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLL 202
|
Length = 252 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 60/259 (23%), Positives = 102/259 (39%), Gaps = 55/259 (21%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG---HELN 239
+L V V+ + L+GP GAGKTTL+ A+ G L +G + G L+
Sbjct: 15 DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALS 71
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
R A + Q E VR+ ++ GR R++ E R
Sbjct: 72 ARAASRRVASVPQDTSLSFEFDVRQVVEM-GRTPHRS-RFDTWTETDRA----------A 119
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++ M+ VA VT +SGG+++RV L
Sbjct: 120 VERAMERTGVAQFADRPVTS-----------------------LSGGERQRVLLARALAQ 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------FDD 413
VL +DE + LD + + + ++++V T + A+ +DL D+
Sbjct: 157 ATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAI-------HDLDLAARYCDE 208
Query: 414 IILLSEGQIVYQGPRDNVL 432
++LL++G++ GP +VL
Sbjct: 209 LVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 3e-04
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 23/190 (12%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQ-ETFARV 941
+S G + G+ G+G+T LM+ L G R G IS P++ + +
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS--PRSPLDAVKKG 339
Query: 942 SGYCEQNDIHSPY---------VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
Y ++ + + + + SL + + + EL+ LK
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399
Query: 993 --SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
S+N + ++ LS ++++ I+ L P +I DEPT G+D A A + + +R
Sbjct: 400 CHSVNQN------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMR 453
Query: 1051 NTVDTGRTVV 1060
D G+ ++
Sbjct: 454 QLADDGKVIL 463
|
Length = 510 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 61/252 (24%), Positives = 106/252 (42%), Gaps = 53/252 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
LK V+ ++ L+G G GK+TL+ ++ G SG + G ++ E P R
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLIS---GLAQPTSGGVILEGKQITEPGPDRM 57
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
+ + L +TVRE + + +L +LS+ E++A
Sbjct: 58 VVFQNYSLLPW--LTVRENIALAVDR--------VLPDLSKSERRA-------------- 93
Query: 307 VAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYM 366
+ + + ++GL AD G +SGG K+RV L VL +
Sbjct: 94 ----------IVEEHIALVGLTEAADKRPGQ-----LSGGMKQRVAIARALSIRPKVLLL 138
Query: 367 DEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY-- 424
DE LD+ T + + L Q+ VT+++ T+D+ D+ +LLS+ ++V
Sbjct: 139 DEPFGALDALTRGNLQEELMQIWEEHRVTVLMV-------THDV-DEALLLSD-RVVMLT 189
Query: 425 QGPRDNVLEFFE 436
GP N+ + E
Sbjct: 190 NGPAANIGQILE 201
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 3e-04
Identities = 48/189 (25%), Positives = 82/189 (43%), Gaps = 27/189 (14%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
IL+ ++ V+P + ++GP G+GK+TL LAG+ ++ G + + G +L E P+
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLELSPED 74
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
GE + + GV ++ L L+ G +P +D F
Sbjct: 75 RA----------GE-GIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEP---LDRF-- 118
Query: 306 AVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365
L+ + KI L + D ++ + G SGG+KKR +M V +
Sbjct: 119 ------DFQDLMEE---KIALLKMPED-LLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 168
Query: 366 MDEISTGLD 374
+DE +GLD
Sbjct: 169 LDESDSGLD 177
|
Length = 248 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 3e-04
Identities = 62/249 (24%), Positives = 104/249 (41%), Gaps = 45/249 (18%)
Query: 200 TLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLH 256
T ++GP G GK+TL+ L+ + A G + G + + + R ++Q+
Sbjct: 36 TAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGEHIQHYASKEVARRIGLLAQNATT 92
Query: 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSL 316
G++TV+E L RY +R K+ + +A KA+ G T L
Sbjct: 93 PGDITVQE--------LVARGRYPHQPLFTRWRKE-------DEEAVTKAMQATGI-THL 136
Query: 317 VTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSS 376
V DT+ SGGQ++R +L ++ +DE +T LD S
Sbjct: 137 ADQSV----------DTL---------SGGQRQRAWIAMVLAQETAIMLLDEPTTWLDIS 177
Query: 377 TTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG-PRDNVL-EF 434
+ + L ++ T+ A+L + +I L EG+IV QG P++ V E
Sbjct: 178 HQIDLLELLSELNREKGYTL-AAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAEL 236
Query: 435 FEHM-GFKC 442
E + G +C
Sbjct: 237 IERIYGLRC 245
|
Length = 265 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 3e-04
Identities = 45/179 (25%), Positives = 71/179 (39%), Gaps = 36/179 (20%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI--EGDIKISGYPKNQ 935
D L+ + +S R G L+G SG+GK+TL G I +G+I+ G +
Sbjct: 298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTL-----GLALLRLIPSQGEIRFDGQDIDG 352
Query: 936 ETFARVSGYCEQNDIH----------SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+ + + + SP +TV ++ + +R V E
Sbjct: 353 LSRKEMRPL--RRRMQVVFQDPYGSLSPRMTV-GQIIEEGLRVHEPKLSAAERDQRVIEA 409
Query: 986 MELVELKSLNDSMVGLPGVS------GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+E VGL + S QR+R+ IA L+ P +I +DEPTS LD
Sbjct: 410 LE----------EVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458
|
Length = 534 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 1004 VSGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1059
LS +++ +A+ L + + +DE GLD R + + + G V
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 1060 VCTIHQPSIDIFEAFDELLLLKR 1082
+ H P ++ E D+L+ +K+
Sbjct: 135 IVITHLP--ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 3e-04
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 31/172 (18%)
Query: 883 LHSVSGVFRPG-VLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETFA 939
L G G V+ + G +G GKTT +LAG G ++ ++KIS Y K Q
Sbjct: 355 LEVEGGEIYEGEVIGIV-GPNGIGKTTFAKLLAGVLKPDEGEVDPELKIS-Y-KPQYIKP 411
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
G TV + LL S L S + E+++ ++L+ L D V
Sbjct: 412 DYDG------------TVED-LLRSITDDLGS-------SYYKSEIIKPLQLERLLDKNV 451
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LS + +R+ IA L + + +DEP++ LD V + +R
Sbjct: 452 -----KDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRR 498
|
Length = 590 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-- 241
+L DVS ++ + LLGP G+GK+TL+ +AG D SG I G +L +
Sbjct: 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPD---SGSILIDGEDLTDLED 69
Query: 242 ---VPQRTCAYISQHDLHHGEMTVRE--TLDFSG 270
+R + Q +TV E L SG
Sbjct: 70 ELPPLRRRIGMVFQDFALFPHLTVLENIALGLSG 103
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 55/255 (21%), Positives = 102/255 (40%), Gaps = 53/255 (20%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP- 243
R+++DVS V + LLGP GAGKTT + G + +D +G I +++ +P
Sbjct: 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDIS-LLPL 72
Query: 244 ----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDP 298
+R Y+ Q E ++ L + V R +L AE +RE +A
Sbjct: 73 HARARRGIGYLPQ------EASIFRRLSVYDNLMAVLQIRDDLSAE--QREDRA------ 118
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+ M+ + S+ + +SGG+++RV L
Sbjct: 119 --NELMEEFHIEHLRDSM-----------------------GQSLSGGERRRVEIARALA 153
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL-QPAPETYDLFDDIILL 417
+ +DE G+D + I + ++ H+ D + V + ET + + ++
Sbjct: 154 ANPKFILLDEPFAGVDPISVIDIKRIIE---HLRDSGLGVLITDHNVRETLAVCERAYIV 210
Query: 418 SEGQIVYQGPRDNVL 432
S+G ++ G +L
Sbjct: 211 SQGHLIAHGTPTEIL 225
|
Length = 241 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++R +L + + +DE LD + QI K L+++ L T++V L
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVL-- 193
Query: 403 PAPETYDL------FDDIILLSEGQIVYQGPRDNVLE 433
+D+ D I+ L G++V QG D +++
Sbjct: 194 -----HDINFASCYSDHIVALKNGKVVKQGSPDEIIQ 225
|
Length = 252 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 46/252 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L+ +S ++ ++GP G+GK+TL + +G SG + G +L
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLI---VGIWPPTSGSVRLDGADLK----- 383
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
Q D RET G+ +G + L + E A + + + +
Sbjct: 384 -------QWD--------RETF---GKHIGYLPQDVELFPGTVAENIARFGENADPEKII 425
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
+A +AG V + IL L DT++G +SGGQ++R+ L G ++
Sbjct: 426 EAAKLAG-----VHEL---ILRLPDGYDTVIGPG-GATLSGGQRQRIALARALYGDPKLV 476
Query: 365 YMDEISTGLDSSTTFQICKFLKQM----VHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+DE ++ LD + +K + + ++ +T +LL D I++L +G
Sbjct: 477 VLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV-------DKILVLQDG 529
Query: 421 QIVYQGPRDNVL 432
+I G RD VL
Sbjct: 530 RIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 4e-04
Identities = 49/208 (23%), Positives = 85/208 (40%), Gaps = 48/208 (23%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L+D++ ++ + ++LGP G GKTTL+ +AG + G IT G + +
Sbjct: 15 PALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGPGAE 71
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
R + Q++ G + R D + G + LA + + ++
Sbjct: 72 R--GVVFQNE---GLLPWRNVQD----NVAFGLQ---LAGVEKMQRL------------- 106
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR--GISGGQKKRVTTGEMLVGTAN 362
+A Q +LK +GL+ G E R +SGGQ++RV L
Sbjct: 107 ---EIAHQ--------MLKKVGLE-------GAEKRYIWQLSGGQRQRVGIARALAANPQ 148
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVH 390
+L +DE LD+ T Q+ L ++
Sbjct: 149 LLLLDEPFGALDAFTREQMQTLLLKLWQ 176
|
Length = 255 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 4e-04
Identities = 47/195 (24%), Positives = 75/195 (38%), Gaps = 56/195 (28%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+S V P + +++GP GAGKTT+M + GK D G + + G +L
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDL-------- 66
Query: 247 CAYISQHDL-HHG------------EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
+ +H + G +TV E L+ L + + A L R
Sbjct: 67 -TGLPEHQIARAGIGRKFQKPTVFENLTVFENLE-----LALPRDKSVFASLFFRLSAEE 120
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
I+ VL+ +GL AD + G +S GQK+ +
Sbjct: 121 ---KDRIEE------------------VLETIGLADEADRLAGL-----LSHGQKQWLEI 154
Query: 354 GEMLVGTANVLYMDE 368
G +L+ +L +DE
Sbjct: 155 GMLLMQDPKLLLLDE 169
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 4e-04
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
LKD+S VK LLGP G GKTTL+ +A G + + +G I G ++ PQ
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIA---GLERQTAGTIYQGGRDITRLPPQ 74
Query: 245 R 245
+
Sbjct: 75 K 75
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 4e-04
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 68/256 (26%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
+ LK +S + T LLGP GAGK+TL+L L G L G++ G E+N
Sbjct: 19 KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLN---GIYLPQRGRVKVMGREVN----A 71
Query: 245 RTCAYISQH--------DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
++ D TV + + F +G+ E+ RR ++A
Sbjct: 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-----DEVERRVEEA---- 122
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+KAV + + + D+ +S GQKKRV +
Sbjct: 123 -------LKAVRM----------WDFR-------------DKPPYHLSYGQKKRVAIAGV 152
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL------ 410
L +V+ +DE LD + + L ++ H T+IVA T+D+
Sbjct: 153 LAMDPDVIVLDEPMAYLDPRGQETLMEILDRL-HNQGKTVIVA-------THDVDLAAEW 204
Query: 411 FDDIILLSEGQIVYQG 426
D +I+L EG+++ +G
Sbjct: 205 ADQVIVLKEGRVLAEG 220
|
Length = 274 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 4e-04
Identities = 55/252 (21%), Positives = 98/252 (38%), Gaps = 48/252 (19%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+ + V DVS K + ++GP GAGKTTL+ L G+I G +
Sbjct: 345 ANSSQGVF---DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGID 398
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+N +++ L TV + R + R +
Sbjct: 399 INT---------VTRESLRKSIATVFQDAGLFNRSIRENIRLG--------------REG 435
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ +A A D++LK DT+VG+ R +SGG+++R+ +
Sbjct: 436 ATDEEVYEAAKAAA-----AHDFILKRSN---GYDTLVGERGNR-LSGGERQRLAIARAI 486
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD---VTMIVALLQPAPETYDLFDDI 414
+ A +L +DE ++ LD T ++ K + L T I+A DL +
Sbjct: 487 LKNAPILVLDEATSALDVETEARV----KNAIDALRKNRTTFIIAHRLSTVRNADL---V 539
Query: 415 ILLSEGQIVYQG 426
+ L +G+++ +G
Sbjct: 540 LFLDQGRLIEKG 551
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHI 391
DT + + + R SGG+++R+ +L+ A ++ +DE + GLD T Q+ + +++
Sbjct: 88 DTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKD 147
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426
+ I L + D I+ L G+I+ QG
Sbjct: 148 KTLIWITHHLT----GIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 4e-04
Identities = 62/237 (26%), Positives = 101/237 (42%), Gaps = 17/237 (7%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG---YPK 933
E + L+ VS G +++G +G+GK+T ++ G EG +KI G +
Sbjct: 17 ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELLTAE 74
Query: 934 NQETFARVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
N R G QN D TV + + + + + KR VDE + V +
Sbjct: 75 NVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR---VDEALLAVNML 131
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D P + LS Q++R+ +A + P II +DE TS LD +MR +
Sbjct: 132 ---DFKTREP--ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEI 186
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP--LGHESHKLIEYFEAVP 1107
+ + V +I +D + D +L++K G + A P L S ++E VP
Sbjct: 187 KEKYQLTVLSITH-DLDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVP 242
|
Length = 277 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 4e-04
Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 27/245 (11%)
Query: 855 LTFDNMSYFV--DMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDV 912
+ DN+SY P E K L++ S F+ +T ++G +G+GK+T++ +
Sbjct: 7 IILDNVSYTYAKKTPFEFKA----------LNNTSLTFKKNKVTCVIGTTGSGKSTMIQL 56
Query: 913 LAG---RKTGGYIEGDIKI-SGYPKNQET--FARVSGYCEQNDIHSPYVTVYESLLYSAW 966
G +TG I GD I + K +E + G Q + + E +
Sbjct: 57 TNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGP 116
Query: 967 LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026
+ L + +K V EL++L L + V LS Q++R+ +A + + +
Sbjct: 117 VNLGENKQEAYKK-----VPELLKLVQLPEDYVKRSPFE-LSGGQKRRVALAGIIAMDGN 170
Query: 1027 IIFMDEPTSGLDARAAAIVMRT-VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085
+ +DEPT GLD + + R + + ++ H + DE++++ G+
Sbjct: 171 TLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE-GK 228
Query: 1086 VIYAG 1090
VI G
Sbjct: 229 VISIG 233
|
Length = 289 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 49/240 (20%), Positives = 93/240 (38%), Gaps = 48/240 (20%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
IL ++S V+ + GP G GK+TL+ +A + SG + + G +++ P+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEA 74
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ +Y +Q G+ TV + L F +++ +PD A
Sbjct: 75 YRQQVSYCAQTPALFGD-TVEDNLIFP---------WQIRNR----------RPDR--AA 112
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ +A S++T + +SGG+K+R+ L
Sbjct: 113 ALDLLARFALPDSILTKNI-------------------TELSGGEKQRIALIRNLQFMPK 153
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
+L +DEI++ LD S I + + + V +V ++ + D +I L G
Sbjct: 154 ILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA 212
|
Length = 223 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 5e-04
Identities = 55/201 (27%), Positives = 96/201 (47%), Gaps = 39/201 (19%)
Query: 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911
+SLT +N+S+ + +L +S + G AL+G +G GK+TL+
Sbjct: 336 QVSLTLNNVSF-----------TYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQ 384
Query: 912 VLAGRKTGGY--IEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESL-LYSAWLR 968
+L T + +G+I ++G P ++ Y E + V + + L+SA LR
Sbjct: 385 LL----TRAWDPQQGEILLNGQP--------IADYSEA-ALRQAISVVSQRVHLFSATLR 431
Query: 969 ----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP---GVSG--LSTEQRKRLTIAV 1019
L++ + + + EV++ V L+ L + GL G G LS +++RL IA
Sbjct: 432 DNLLLAAPNASDEALI---EVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIAR 488
Query: 1020 ELVANPSIIFMDEPTSGLDAR 1040
L+ + ++ +DEPT GLDA
Sbjct: 489 ALLHDAPLLLLDEPTEGLDAE 509
|
Length = 574 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 60/273 (21%), Positives = 104/273 (38%), Gaps = 78/273 (28%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT-------LMLALAGKL---GKDL---- 225
KKR +++ DVS V + LLGP GAGKTT L+ +GK+ +D+
Sbjct: 15 KKR--KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLP 72
Query: 226 ---RASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282
RA I Y +PQ + ++TV + ++
Sbjct: 73 MHKRARLGIGY--------LPQEASIF--------RKLTVEDN---------------IM 101
Query: 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342
A L REK D + E D +L+ + D+
Sbjct: 102 AVLEIREK------DLKK-----------AERKEELDALLEEFHITHLRDSKAY-----S 139
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL- 401
+SGG+++RV L + +DE G+D I ++++ L I L+
Sbjct: 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI----QRIIKHLKDRGIGVLIT 195
Query: 402 -QPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
ET D+ D ++S+G+++ +G + ++
Sbjct: 196 DHNVRETLDICDRAYIISDGKVLAEGSPEEIVN 228
|
Length = 243 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 65/274 (23%), Positives = 116/274 (42%), Gaps = 57/274 (20%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
M ++ + + + + + L+D S V + L+G G+GK+TL AL G +
Sbjct: 1 MMQQAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV--- 57
Query: 225 LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLG----VGTRYE 280
ASGKI+ G + + + AY+ Q E +D+S L + RY
Sbjct: 58 RLASGKISILGQPTRQALQKNLVAYVPQ----------SEEVDWSFPVLVEDVVMMGRYG 107
Query: 281 LLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340
+ L R +K+ D +I VT + ++ ++ +G+
Sbjct: 108 HMGWLRRAKKR-----DRQI----------------VTAALARVDMVEF-RHRQIGE--- 142
Query: 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400
+SGGQKKRV + V+ +DE TG+D T +I L+++ TM+V+
Sbjct: 143 --LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVS- 198
Query: 401 LQPAPETYDL-----FDDIILLSEGQIVYQGPRD 429
T++L F D ++ +G ++ GP +
Sbjct: 199 ------THNLGSVTEFCDYTVMVKGTVLASGPTE 226
|
Length = 272 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 6e-04
Identities = 60/259 (23%), Positives = 108/259 (41%), Gaps = 52/259 (20%)
Query: 178 PSKKRSVRILKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236
R L +S I + +T++ G GAGK+TL+ A+AG L SG+I G
Sbjct: 13 KGTPLEKRALNGLSLEIAEGDFVTVI-GSNGAGKSTLLNAIAGDLKPT---SGQILIDGV 68
Query: 237 ELNEF-VPQR--TCAYISQHDLHH--GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
++ + V +R A + Q L E+T+ E L LAE R K+
Sbjct: 69 DVTKKSVAKRANLLARVFQDPLAGTAPELTIEENL--------------ALAE--SRGKK 112
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
G+ + + ++ L + + + D + +SGGQ++ +
Sbjct: 113 RGLSS--------------ALNERRRSSFRERLARLGLGLENRLSDRIGL-LSGGQRQAL 157
Query: 352 TTGEMLVGTAN---VLYMDEISTGLDSSTTFQICKFLKQMV--HILDVTMIVALLQPAPE 406
+ +L+ T + +L +DE + LD T + + ++V H L M+ ++ A
Sbjct: 158 S---LLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDA-- 212
Query: 407 TYDLFDDIILLSEGQIVYQ 425
D + +I+L G+IV
Sbjct: 213 -LDYGNRLIMLHSGKIVLD 230
|
Length = 263 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 6e-04
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
V+ L VS V+ + LLG GAGK+TLM L+G D SG+I G E++
Sbjct: 12 GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPD---SGEILVDGKEVS 65
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 6e-04
Identities = 52/219 (23%), Positives = 98/219 (44%), Gaps = 25/219 (11%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF 938
+LH +S P ++G +GAGK+++++ L + +G I I +
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF--RIVELEKGRIMIDDCDVAKFGLTDL 1308
Query: 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDS 997
RV Q SP +L+S +R + D ++ + E +E +K ++ +
Sbjct: 1309 RRVLSIIPQ----SP-------VLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRN 1357
Query: 998 MVGL-----PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
GL G S QR+ L++A L+ I+ +DE T+ +D R +++ RT+R
Sbjct: 1358 PFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ T++ H+ + I D++L+L G + Y P
Sbjct: 1418 FKSC-TMLVIAHRLNTII--DCDKILVLSSGQVLEYDSP 1453
|
Length = 1495 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 6e-04
Identities = 32/161 (19%), Positives = 53/161 (32%), Gaps = 27/161 (16%)
Query: 62 IERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKR 121
+ T L + + D + E + ++ L+ + + E+D E+ LK+
Sbjct: 168 LGPPGTGKTLAARTVGKSGADLGALAKEAALR--ELRRAIDLVGEYIGVTEDDFEEALKK 225
Query: 122 IRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKK 181
+ + V E V D G L A+ L +
Sbjct: 226 VL-PSRGVLFEDED---------VTLDDIGGLEEAKEELKEAIETP-----LKR---PEL 267
Query: 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
L+ G+ LL GPPG GKT L A+A +
Sbjct: 268 FRKLGLRPPKGV-------LLYGPPGTGKTLLAKAVALESR 301
|
Length = 494 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 6e-04
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 25/171 (14%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE---GDIKISGYPKNQ 935
++ + +S R G A++G +G+GK+TL +LAG IE G++ I +P +
Sbjct: 25 TVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAG-----MIEPTSGELLIDDHPLHF 79
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESL--------LYSAWLRLSSDVDTKKRKMFVDEVME 987
+ Y Q I + SL + LRL++D++ ++R+ + E +
Sbjct: 80 GDY----SYRSQR-IRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLR 134
Query: 988 LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
V L L D P + L+ Q++RL +A L+ P +I DE + LD
Sbjct: 135 QVGL--LPDHASYYPHM--LAPGQKQRLGLARALILRPKVIIADEALASLD 181
|
Length = 267 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 7e-04
Identities = 24/81 (29%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ++R+ L+ +L +DE ++ LD T I + L+ + T+IV
Sbjct: 97 LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVI--- 151
Query: 403 PA--PETYDLFDDIILLSEGQ 421
A T D II+L +G+
Sbjct: 152 -AHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ +++ +L +++ +DE + GLD + Q+ + LK + + I+ +
Sbjct: 146 MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL-QTDENKTIILVSH 204
Query: 403 PAPETYDLFDDIILLSEGQIVYQG-PRD 429
E D++I++ EG IV Q P++
Sbjct: 205 DMNEVARYADEVIVMKEGSIVSQTSPKE 232
|
Length = 286 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 7e-04
Identities = 63/291 (21%), Positives = 110/291 (37%), Gaps = 60/291 (20%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
P+ + R L D+ VK T L+G G+GK+TL+ L G L
Sbjct: 13 PNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-------------- 58
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIK-- 295
++ + G++ V T E+ K+ G+
Sbjct: 59 -------------TEGKVTVGDIVVSST--------------SKQKEIKPVRKKVGVVFQ 91
Query: 296 -PDPEI--DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG------DEMRRGISGG 346
P+ ++ + +K VA Q + + KI + MVG ++ +SGG
Sbjct: 92 FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKL---EMVGLADEFWEKSPFELSGG 148
Query: 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406
Q +RV +L VL +DE + GLD ++ + + + ++V L +
Sbjct: 149 QMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLM--DD 206
Query: 407 TYDLFDDIILLSEGQIVYQGPRDNV---LEFFEHMGFKCPERKGVADFLQE 454
D D + LL +G I+ G +V ++F + P+ AD LQ+
Sbjct: 207 VADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQK 257
|
Length = 288 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-04
Identities = 55/262 (20%), Positives = 96/262 (36%), Gaps = 63/262 (24%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
+LLGP GAGK++L+ L ++ SG + G+ + S+
Sbjct: 32 VLLGPSGAGKSSLLRVLNLL---EMPRSGTLNIAGNHFD----------FSKT------P 72
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
+ + D V +Y L L+ +E I+A + + ++ + +
Sbjct: 73 SDKAIRDLRRNVGMVFQQYNLWPHLTVQENL--------IEAPCRVLGLSKDQALARAEK 124
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
+LK L L D +SGGQ++RV L+ VL DE + LD T Q
Sbjct: 125 LLKRLRL-----KPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
Query: 381 ICKFLKQM----------VHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDN 430
I +K++ H ++V A ++ + G IV QG
Sbjct: 180 IVSIIKELAETGITQVIVTHEVEVARKTA------------SRVVYMENGHIVEQG---- 223
Query: 431 VLEFFEHMGFKCPERKGVADFL 452
+ F P+ + ++L
Sbjct: 224 -----DASCFTEPQTEAFKNYL 240
|
Length = 242 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-04
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 27/165 (16%)
Query: 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGR-KTGGYIEGDIKISGYPKNQETFARVSGYC 945
G G + ++G +G GKTT + +LAG K E D+K+S Y K Q G
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVS-Y-KPQYISPDYDG-- 416
Query: 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005
TV + L + S + F E+++ + L+ L + V
Sbjct: 417 ----------TVEDLL----RSAIRSAFGSSY---FKTEIVKPLNLEDLLERPV-----D 454
Query: 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
LS + +R+ IA L + +DEP++ LD IV + +R
Sbjct: 455 ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIR 499
|
Length = 591 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 7e-04
Identities = 48/182 (26%), Positives = 83/182 (45%), Gaps = 21/182 (11%)
Query: 876 GEDRLQL-------LHSVSGVFRPGVLTALMGVSGAGKTTLMDVL--AGRKTGGYIEGDI 926
GE RL++ ++ VS R G + + G+ GAG+T LM VL A +T GY+ D
Sbjct: 254 GEVRLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDG 313
Query: 927 KISGYPKNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSD---VDTKKRKM 980
Q+ A Y ++ V +V E++ +A S + +
Sbjct: 314 HEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQ 373
Query: 981 FVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039
V + + L +K+ + + +GL LS ++++ IA L+ P ++ +DEPT G+D
Sbjct: 374 AVSDFIRLFNIKTPSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
Query: 1040 RA 1041
A
Sbjct: 429 GA 430
|
Length = 501 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 7e-04
Identities = 54/259 (20%), Positives = 104/259 (40%), Gaps = 55/259 (21%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
ILK+V+ + + +T L+GP G GK+T + L R + I HE +
Sbjct: 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN-------RMNDLIPGFRHEGH------ 64
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMK 305
Y+ D++ + V EL ++ KP+P +
Sbjct: 65 --IYLDGVDIYDPAVDV--------------------VELRKKVGMVFQKPNPFPKSIFD 102
Query: 306 AVA----VAGQETSLVTDYVLKILGLDICADTM---VGDEMRR---GISGGQKKRVTTGE 355
VA + G++ D++ + + + A + V D++ + G+SGGQ++R+
Sbjct: 103 NVAYGLRIHGEDDE---DFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET--YDLFDD 413
+ + V+ MDE + LD +T +I + ++ + ++ +Q A Y F
Sbjct: 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSF-- 217
Query: 414 IILLSEGQIVYQGPRDNVL 432
G+I+ G D +
Sbjct: 218 ---FLNGEIIESGLTDQIF 233
|
Length = 250 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 7e-04
Identities = 37/203 (18%), Positives = 60/203 (29%), Gaps = 66/203 (32%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH 951
PG + ++G G+GKTTL LA + G
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARE--------------LGPPGGGVIYIDG-------- 38
Query: 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011
++++E V + L + G
Sbjct: 39 -------------------------------EDILEEVLDQLLLIIVGGKKASGSGELRL 67
Query: 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD------TGRTVVCTIHQ 1065
R L +A +L P ++ +DE TS LDA A+++ + TV+ T +
Sbjct: 68 RLALALARKL--KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125
Query: 1066 PSIDIFEAFDELLLLKRGGRVIY 1088
LL +R R I
Sbjct: 126 EKD-----LGPALLRRRFDRRIV 143
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 7e-04
Identities = 45/158 (28%), Positives = 72/158 (45%), Gaps = 15/158 (9%)
Query: 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGD-IKISGYPKNQETFARVS 942
VS G + AL+G SG GK+TL+ +LAG + T G I D + +S P Q R
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQ----RPI 93
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
Q+ P++TV +++ + D + V E++ L + + P
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGL------KQDKLPKAEIASRVNEMLGLVHMQEFAKRKP 147
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS QR+R+ +A L P ++ +DEP LD +
Sbjct: 148 --HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKK 183
|
Length = 377 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 7e-04
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 8/75 (10%)
Query: 176 LVPSKKRSV-----RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGK 230
LV + SV R+L DVS +KP ++ LLGP GAGK+TL+ + G + D G
Sbjct: 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPD---EGV 60
Query: 231 ITYCGHELNEFVPQR 245
I G +VPQ+
Sbjct: 61 IKRNGKLRIGYVPQK 75
|
Length = 251 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-04
Identities = 32/112 (28%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 973 VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
+ ++ K V+E +ELV ++ + P + LS Q++R+ IA + P II +DE
Sbjct: 112 IPHEEMKERVNEALELVGMQDFKERE---P--ARLSGGQKQRVAIAGAVAMRPKIIILDE 166
Query: 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083
TS LD +++T++ D TV+ H +D D +L++K G
Sbjct: 167 ATSMLDPEGRLELIKTIKGIRDDYQMTVISITH--DLDEVALSDRVLVMKNG 216
|
Length = 279 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 8e-04
Identities = 53/253 (20%), Positives = 107/253 (42%), Gaps = 43/253 (16%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHELNEFVPQ 244
L D++ + +++T L+GP G GK+T + L L +++ G++ G
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKN------- 72
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
I D+ E+ R + F + Y+ +A R GIK E+D
Sbjct: 73 -----IYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIH---GIKDKKELD--- 121
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGTA 361
K V A ++ +L + V D++++ +SGGQ++R+ +
Sbjct: 122 KIVEWALKKAALWDE---------------VKDDLKKSALKLSGGQQQRLCIARTIAVKP 166
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFDDIIL 416
+V+ MDE ++ LD +T +I + ++ + ++ +Q A D L D+I
Sbjct: 167 DVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIE 226
Query: 417 LSEGQIVYQGPRD 429
++ + ++ P+
Sbjct: 227 FNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 8e-04
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 29/225 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L +S G ++G +GAGK+TL+ ++AG + T G +K++G +
Sbjct: 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT----SGKVKVTG---------K 89
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
V+ E P +T E++ + + + ++ VDE++E EL D
Sbjct: 90 VAPLIELGAGFDPELTGRENIYLRGLILGLTRKEIDEK---VDEIIEFAELGDFID---- 142
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
P V S+ RL +V P I+ +DE + DA + + V+ +T+V
Sbjct: 143 QP-VKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIV 201
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEA 1105
H I + D + L+ G++ G ++I +E
Sbjct: 202 LVSHDLGA-IKQYCDRAIWLEH-GQIRMEG----SPEEVIPAYEE 240
|
Length = 249 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-04
Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 26/169 (15%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTT----LMDVLAGRKTGGYIEGDIKISGYPKNQETF 938
+ ++S RPG L+G SG+GK+T L+ ++ + G+I G P +
Sbjct: 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-------GEIWFDGQPLHNLNR 354
Query: 939 ARVSGYCEQ--------NDIHSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELV 989
++ + N +P + V + + LR+ + +R+ V VME V
Sbjct: 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQ--IIEEGLRVHQPTLSAAQREQQVIAVMEEV 412
Query: 990 ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
L ++ P + S QR+R+ IA L+ PS+I +DEPTS LD
Sbjct: 413 GLDP--ETRHRYP--AEFSGGQRQRIAIARALILKPSLIILDEPTSSLD 457
|
Length = 529 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 9e-04
Identities = 55/273 (20%), Positives = 108/273 (39%), Gaps = 52/273 (19%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL--AGKLGKDLRASGKITYCGHEL-----N 239
+KDVS + +T ++GP G GK+T++ ++ L R +GKI ++ +
Sbjct: 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
+R + Q M++ + V Y+L ++R E D
Sbjct: 80 PVSIRRRVGMVFQKPNPFPAMSIYDN---------VIAGYKLNGRVNRSEA------DEI 124
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
+++ +K VA+ D D + + M +SGGQ++R+ +
Sbjct: 125 VESSLKRVAL-----------------WDEVKDRLKSNAME--LSGGQQQRLCIARTIAV 165
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
V+ MDE ++ LD +T +I + ++++ + ++ +Q A D
Sbjct: 166 KPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDY---TAFFYM 222
Query: 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G +V G + F PE+K D++
Sbjct: 223 GDLVECGETKKI--------FTTPEKKQTEDYI 247
|
Length = 252 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 9e-04
Identities = 48/162 (29%), Positives = 75/162 (46%), Gaps = 30/162 (18%)
Query: 893 GVLTALMGVSGAGKTTLM-------DVLAGRKTGGYI--EGDIKISGYPKNQETFARVSG 943
G +TAL+G SG GK+T++ D++ G G + +G E R+
Sbjct: 39 GKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGM 98
Query: 944 YCEQNDIHSPY-VTVYESLLYSAWLR-----LSSDVDTKKRKMFV-DEVMELVELKSLND 996
+Q + P+ ++YE++ + A + + V+ RK V DE + LN+
Sbjct: 99 VFQQPN---PFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD-----KLNE 150
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
S G S LS Q++RL IA + P +I MDEP S LD
Sbjct: 151 S-----GYS-LSGGQQQRLCIARTIAIEPEVILMDEPCSALD 186
|
Length = 269 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 62/273 (22%), Positives = 101/273 (36%), Gaps = 91/273 (33%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL +S + + ++G GAGK+T++ L R SG IT G ++ +
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTILRLL-------FRFYDVNSGSITIDGQDIRDV 330
Query: 242 -----------VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
VPQ T + T+ + + T E+ A +
Sbjct: 331 TQQSLRRAIGIVPQDTVLFND---------TIAYNIKYGRP---DATAEEVGAAAEAAQI 378
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQK 348
I+ PE G D T VG+ RG +SGG+K
Sbjct: 379 HDFIQSLPE--------------------------GYD----TGVGE---RGLKLSGGEK 405
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQ---------MVHILDVTMIVA 399
+RV ++ +L +DE ++ LD+ T I L++ + H L T+I A
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS-TIIDA 464
Query: 400 LLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
D+II+L G+IV +G + +L
Sbjct: 465 ------------DEIIVLDNGRIVERGTHEELL 485
|
Length = 497 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 0.001
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 15/129 (11%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQK+RV +L ++ DE ++ LD +I K + + T+I
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISI--- 199
Query: 403 PAPETYD-----LFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFLQE 454
T+D L D +I+ SEG+++ QG +L E E P ++ L+
Sbjct: 200 ----THDMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSKKLKG 255
Query: 455 VTSKKDQEQ 463
+ ++E+
Sbjct: 256 IDPTYNEEE 264
|
Length = 271 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 0.001
Identities = 58/268 (21%), Positives = 106/268 (39%), Gaps = 59/268 (22%)
Query: 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNEFVPQRTCAYIS 251
+ +T L+GP G GK+T + L ++ D+ + +G+I + G + Y S
Sbjct: 28 EEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNI----------YGS 76
Query: 252 QHDL----HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAV 307
+ DL M ++ F + + ++ K AG+K ID +
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFP---------FSVYDNVAYGLKIAGVKDKELIDQRV--- 124
Query: 308 AVAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVTTGEMLVGTANVL 364
E SL + K D + R SGGQ++R+ L V+
Sbjct: 125 -----EESLKQAAIWK----------ETKDNLDRNAQAFSGGQQQRICIARALAVRPKVV 169
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424
+DE ++ LD ++ +I + L ++ H M+ LQ A + D L G ++
Sbjct: 170 LLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR---ISDQTAFLMNGDLIE 226
Query: 425 QGPRDNVLEFFEHMGFKCPERKGVADFL 452
GP + + F P+++ +D+L
Sbjct: 227 AGPTEEM--------FIAPKKQITSDYL 246
|
Length = 251 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 0.001
Identities = 62/254 (24%), Positives = 103/254 (40%), Gaps = 47/254 (18%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V +LK ++ + P + L+GP G+GK+T+ L G++ G L ++
Sbjct: 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQY- 548
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA-GIKPDPEID 301
Y+ + G+ E + FSG S RE A G+ P D
Sbjct: 549 ---DHHYLHRQVALVGQ----EPVLFSG---------------SVRENIAYGLTDTP--D 584
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ A A A + D+ I+ DT VG E +SGGQK+R+ LV
Sbjct: 585 EEIMAAAKA----ANAHDF---IMEFPNGYDTEVG-EKGSQLSGGQKQRIAIARALVRKP 636
Query: 362 NVLYMDEISTGLD--SSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
VL +DE ++ LD Q + +L + ++ ++ A D I++L +
Sbjct: 637 RVLILDEATSALDAECEQLLQESRSRASRTVLL-IAHRLSTVERA-------DQILVLKK 688
Query: 420 GQIVYQGPRDNVLE 433
G +V G ++E
Sbjct: 689 GSVVEMGTHKQLME 702
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 9/69 (13%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEFVP 243
+L +++ V+P L+ G GAGKT+L+ ALAG L SG+I+ F+P
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAG-----LWPWGSGRISMPADSALLFLP 462
Query: 244 QRTCAYISQ 252
QR Y+ Q
Sbjct: 463 QRP--YLPQ 469
|
Length = 604 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 47/261 (18%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
++LK+++ ++T ++GP G GK+TL+ AL + +N+ V
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRAL------------------NRMNDIV-- 57
Query: 245 RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ A + L E LD + L +R +P+P +
Sbjct: 58 -SGARLEGAVLLDNENIYSPNLD--------------VVNLRKRVGMVFQQPNPFPKSIF 102
Query: 305 KAVAVAGQ-----ETSLVTDYVLKILGLDICADTMVGDEMRRG--ISGGQKKRVTTGEML 357
VA + S + + V K L D + + + G +SGGQ++R+ +L
Sbjct: 103 DNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD-----LFD 412
V+ MDE + LD +T +I + ++++ + ++ +Q A D L
Sbjct: 163 AIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTG 222
Query: 413 DIILLSEGQIVYQGPRDNVLE 433
D++ ++ PRD E
Sbjct: 223 DLVEYGRTGEIFSRPRDKRTE 243
|
Length = 251 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (98), Expect = 0.001
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGG--YIEGDIKISGY 931
+LH ++ + +TA +G SG GK+T + D++ G G Y G S
Sbjct: 96 HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155
Query: 932 PKNQETFARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE 990
+ E R+ ++ +P+ +++++++ Y R + D K + V++ ++
Sbjct: 156 ISSLELRTRIGMVFQKP---TPFEMSIFDNVAYGP--RNNGINDRKILEKIVEKSLKSAA 210
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
L + G + LS Q++RL IA + P ++ MDEPTS LD A A
Sbjct: 211 LWDEVKDDLDKAG-NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262
|
Length = 329 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 0.001
Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 33/163 (20%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETF 938
++L VS +PG + L+G +GAGK+TL+ V+ G G I+ + K+
Sbjct: 18 RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKL---------- 67
Query: 939 ARVSGYCEQN---DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
R+ GY Q D P L + +LRL +K + ++ V+ L
Sbjct: 68 -RI-GYVPQKLYLDTTLP-------LTVNRFLRLRPGT----KKEDILPALKRVQAGHLI 114
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
D+ P + LS + +R+ +A L+ P ++ +DEPT G+D
Sbjct: 115 DA----P-MQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 0.001
Identities = 52/175 (29%), Positives = 81/175 (46%), Gaps = 26/175 (14%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQET-- 937
Q++ + G L+G SG GK+TL+ ++AG + I G+I I G N+
Sbjct: 18 QVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEPA 74
Query: 938 ---FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
A V QN P+++V E++ Y +R + ++R V E ++EL+ L
Sbjct: 75 DRDIAMVF----QNYALYPHMSVRENMAYGLKIRGMPKAEIEER---VAEAARILELEPL 127
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMR 1047
D P LS QR+R+ + +V P++ DEP S LDA R MR
Sbjct: 128 LDRK---P--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQ---MR 174
|
Length = 356 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 61/270 (22%), Positives = 105/270 (38%), Gaps = 67/270 (24%)
Query: 174 LHLVPSK------KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA 227
+HL+ ++ S L +++ I + ++GP GAGK+TL G L
Sbjct: 1 MHLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP---T 57
Query: 228 SGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287
SG + G I++ ++ VR+ VG ++
Sbjct: 58 SGSVLIRGEP------------ITKENIRE----VRKF---------VGLVFQ------- 85
Query: 288 REKQAGIKPDPEIDAFMKAVAVA------GQETSLV---TDYVLKILGLDICADTMVGDE 338
PD +I + +A G + V L +LGL+ + D
Sbjct: 86 -------NPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-----ELRDR 133
Query: 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
+ +SGG+KKRV ++ VL +DE + GLD ++ FL + +T+I
Sbjct: 134 VPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIF 193
Query: 399 AL--LQPAPETYDLFDDIILLSEGQIVYQG 426
+ L PE + D I ++ +G+IV G
Sbjct: 194 STHQLDLVPE---MADYIYVMDKGRIVAYG 220
|
Length = 277 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.002
Identities = 46/238 (19%), Positives = 98/238 (41%), Gaps = 48/238 (20%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ + ++ +S + +++T ++GP G GK+T +
Sbjct: 19 TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFI---------------------------- 50
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI---KPDPE 299
+T IS+ + G + V +DF G+ + Y+ ++R +Q G+ +P+P
Sbjct: 51 --KTLNRISELE---GPVKVEGVVDFFGQNI-----YDPRININRLRRQIGMVFQRPNPF 100
Query: 300 IDAFMKAVA----VAGQETSLVTDYVLKILGLDICADTMVGDEMRR---GISGGQKKRVT 352
+ + VA ++ + D +++ V D++ + G+SGGQ++R+
Sbjct: 101 PMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLC 160
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
L VL MDE + LD T ++ + + + L + ++ +Q A D
Sbjct: 161 IARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDF 218
|
Length = 259 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 52/182 (28%), Positives = 80/182 (43%), Gaps = 28/182 (15%)
Query: 876 GEDRLQLL---------HSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGYIE- 923
G+ R ++L H+ S G + LMG+SG+GK+TL+ + G G +
Sbjct: 24 GKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLV 83
Query: 924 --GDIKISGYPKNQETF-----ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
GD + + T RVS +Q + P+ TV E++ + L + +
Sbjct: 84 KDGDGSVDVANCDAATLRRLRTHRVSMVFQQFAL-LPWRTVEENVAFG--LEMQGMPKAE 140
Query: 977 KRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
+RK VDE +ELV L D G LS ++R+ +A I+ MDEP S
Sbjct: 141 RRKR-VDEQLELVGLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSA 194
Query: 1037 LD 1038
LD
Sbjct: 195 LD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 0.002
Identities = 36/133 (27%), Positives = 53/133 (39%), Gaps = 31/133 (23%)
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQM-----------VHI 391
+SGGQK+RV L VL DE ++ LD +TT I + LK + H
Sbjct: 141 LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200
Query: 392 LDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451
+DV + D + ++ G++V QG V E F H P+ +F
Sbjct: 201 MDVVKRIC------------DRVAVIDAGRLVEQGT---VSEVFSH-----PKHPLTREF 240
Query: 452 LQEVTSKKDQEQY 464
+Q E Y
Sbjct: 241 IQSTLHLDLPEDY 253
|
Length = 343 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 0.002
Identities = 52/176 (29%), Positives = 82/176 (46%), Gaps = 20/176 (11%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G + L++VS G + ++G SGAGK+TL+ + R T G +
Sbjct: 9 KVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQD 68
Query: 928 ISGYPKNQETFARVS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLS--SDVDTKKRKMFV 982
++ + + AR G Q N + S TV++++ L L+ + K R V
Sbjct: 69 LTALSEKELRKARRQIGMIFQHFNLLSSR--TVFDNVALP--LELAGTPKAEIKAR---V 121
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
E++ELV L D P + LS Q++R+ IA L +NP ++ DE TS LD
Sbjct: 122 TELLELVGLSDKADRY---P--AQLSGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 42/186 (22%), Positives = 79/186 (42%), Gaps = 17/186 (9%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARV 941
+L ++S PG L+G +G+GK+TL+ EGDI+I G N
Sbjct: 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGDIQIDGVSWNSVPL--- 72
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG- 1000
Q + V + ++S R + D K + +V E V LKS+ + G
Sbjct: 73 -----QKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQ 127
Query: 1001 -----LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
+ G LS ++ + +A +++ I+ +DEP++ LD ++ +T++
Sbjct: 128 LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFAD 187
Query: 1056 GRTVVC 1061
++
Sbjct: 188 CTVILS 193
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 0.002
Identities = 54/218 (24%), Positives = 105/218 (48%), Gaps = 38/218 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------- 935
L +V+ +PG + + G +G+GK+TL+ ++ ++ EGDI+ P +
Sbjct: 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLI--QRHFDVSEGDIRFHDIPLTKLQLDSWR 388
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
A VS +P+ L+S +++++ + E+ + L S++
Sbjct: 389 SRLAVVS--------QTPF-------LFSD--TVANNIALGRPDATQQEIEHVARLASVH 431
Query: 996 DSMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
D ++ LP G G LS Q++R++IA L+ N I+ +D+ S +D R ++
Sbjct: 432 DDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQIL 491
Query: 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+R + GRTV+ + H+ S + EA E+L+++ G
Sbjct: 492 HNLRQWGE-GRTVIISAHRLSA-LTEA-SEILVMQHGH 526
|
Length = 569 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 59/246 (23%), Positives = 101/246 (41%), Gaps = 46/246 (18%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
I ++S V ++T ++GP G GKTTL+ + G++ D G+I + G E +P
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDG----ENIPA- 73
Query: 246 TCAYISQHDLHHGEMTVRETLDF---SGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+S+ L+ TVR+ + SG ++ +A R Q P P + +
Sbjct: 74 ----MSRSRLY----TVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQL---PAPLLHS 122
Query: 303 --FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
MK AV GL A M + +SGG +R +
Sbjct: 123 TVMMKLEAV----------------GLRGAAKLMPSE-----LSGGMARRAALARAIALE 161
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+++ DE G D T + K + ++ L VT +V + PE + D ++++
Sbjct: 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVV-VSHDVPEVLSIADHAYIVADK 220
Query: 421 QIVYQG 426
+IV G
Sbjct: 221 KIVAHG 226
|
Length = 269 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.002
Identities = 46/186 (24%), Positives = 70/186 (37%), Gaps = 46/186 (24%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTL--MDVLAGRKTGG--YIEGDIKISGY 931
E ++ L VS G A++G SG GK+TL + + TGG Y +G +
Sbjct: 24 PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQG-QDLLKA 82
Query: 932 PKNQETFAR-----VSGYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
+ R V QN S P V + L L +++ + +R+
Sbjct: 83 DPEAQKLLRQKIQIVF----QNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKALA 136
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTE------------QRKRLTIAVELVANPSIIFMDE 1032
+M V GL E QR+R+ IA L+ +P ++ DE
Sbjct: 137 MMAKV----------------GLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE 180
Query: 1033 PTSGLD 1038
P S LD
Sbjct: 181 PVSALD 186
|
Length = 327 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232
+LKD+S + P L+G GAGK+TL+ +AG+L D G +T
Sbjct: 15 LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPD---EGIVT 58
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 17/214 (7%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG---RKTGGYIEGDIKISGYPKNQETFA 939
L +++ V + G ++G +G+GK+TL L G + G + I + K Q
Sbjct: 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQG-IR 76
Query: 940 RVSGYCEQNDIHSPYV--TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
++ G QN + +V TV E L + ++ +KR VD L E+ L
Sbjct: 77 KLVGIVFQNP-ETQFVGRTVEEDLAFGPENLCLPPIEIRKR---VD--RALAEIG-LEKY 129
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
P LS Q + + +A L P + DE TS LD + V+ ++ + G+
Sbjct: 130 RHRSP--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T+V H +++ D ++++ RG V+ P
Sbjct: 188 TIVYITH--NLEELHDADRIIVMDRGKIVLEGEP 219
|
Length = 274 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 46/217 (21%), Positives = 86/217 (39%), Gaps = 49/217 (22%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K IL D++ ++ +M ++G G+GK+TL L + G L K SG++ G E
Sbjct: 7 KFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTL-LNIIGLLEKF--DSGQVYLNGQETP 63
Query: 240 EFVPQR-------TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
++ Y+ Q+ TV E LD LG+ +LS++EK+
Sbjct: 64 PLNSKKASKFRREKLGYLFQNFALIENETVEENLD-----LGL-----KYKKLSKKEKRE 113
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
K L+ +GL++ + + +SGG+++RV
Sbjct: 114 KKK------------------------EALEKVGLNLKLKQKIYE-----LSGGEQQRVA 144
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
++ ++ DE + LD ++ L ++
Sbjct: 145 LARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN 181
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
+L++VS ++P ++GP G+GK+TL + G L SG++ G +++++ P
Sbjct: 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL---RPTSGRVRLDGADISQWDPNE 73
Query: 245 --RTCAYISQHD 254
Y+ Q D
Sbjct: 74 LGDHVGYLPQDD 85
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 53/224 (23%), Positives = 96/224 (42%), Gaps = 50/224 (22%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L D+S + +++T L+GP G GK+T LR C + +N+ +P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTF-----------LR-------CLNRMNDLIP--- 60
Query: 247 CAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKA 306
++ + GE+ + + + + V EL RR KP+P + +
Sbjct: 61 ---GARVE---GEILL-DGENIYDPHVDV-------VELRRRVGMVFQKPNPFPKSIFEN 106
Query: 307 VA----VAG-QETSLVTDYVLKILG----LDICADTMVGDEMRRGISGGQKKRVTTGEML 357
VA V G ++ + + + V + L D D + E G+SGGQ++R+ L
Sbjct: 107 VAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL--HESALGLSGGQQQRLCIARAL 164
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
VL MDE ++ LD T +I ++++H L + ++
Sbjct: 165 AVEPEVLLMDEPASALDPIATQKI----EELIHELKARYTIIIV 204
|
Length = 253 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.003
Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 312 QETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371
+E +LV D + K+ + D + + + +SGGQ++R+ L +L +DE ++
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQNAL--ALSGGQQQRLCIARALAIKPKLLLLDEPTS 171
Query: 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-----FDDIILLSEGQIVYQG 426
LD ++ I + LK++ H L + M+ +Q D ++I E + ++
Sbjct: 172 ALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231
Query: 427 PRD 429
P+
Sbjct: 232 PKQ 234
|
Length = 246 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.003
Identities = 60/233 (25%), Positives = 93/233 (39%), Gaps = 51/233 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
LLGP G GKTT++ +AG D SG+I G ++ R + Q M
Sbjct: 45 LLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHM 101
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
TV E + F R AE++ R +A
Sbjct: 102 TVFENVAFGLRMQKTPA-----AEITPRVMEA---------------------------- 128
Query: 321 VLKILGLDICADTMVGDEMRR--GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTT 378
L+++ L+ A R+ +SGGQ++RV +V VL +DE + LD
Sbjct: 129 -LRMVQLEEFAQ-------RKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 379 FQICKFLKQMVHILDVTMI-VALLQPAPETYDLFDDIILLSEGQIVYQG-PRD 429
Q+ LK + L +T + V Q E + D I+++ +G+I G PR+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQ--EEALTMSDRIVVMRDGRIEQDGTPRE 231
|
Length = 375 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQP 403
SGGQ++RV L ++L DE +T LD + QI LK++ L + ++
Sbjct: 159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFI---- 214
Query: 404 APETYDL------FDDIILLSEGQIVYQGPRDNVLEFFEH 437
T+DL D + ++ G+IV G + + +H
Sbjct: 215 ---THDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQH 251
|
Length = 534 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.003
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 25/170 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE--T 937
L+ V+ G A++G +G+GK+TL+ L G + T G + G+ I+ KN++
Sbjct: 23 LYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82
Query: 938 FARVSGYCEQNDIHSPY-VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL----- 991
+ G Q H + TV + + + S+ D K++ E++ELV L
Sbjct: 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK---AREMIELVGLPEELL 139
Query: 992 -KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+S + LS Q +R+ IA L P ++ +DEPT+GLD +
Sbjct: 140 ARSPFE----------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179
|
Length = 290 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 0.004
Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILD 393
SGG K+R+ + L+ +L +DE ++GLD + + + L+++ HIL+
Sbjct: 97 SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156
Query: 394 VTMIVALLQPAPETYDLFDDIILLSEGQI 422
E L D + +L+ G+I
Sbjct: 157 ------------EAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.004
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTL--MLALAGKLGKDLRASGKITYCGHELNE 240
LKD++ + +++T L+GP G GK+TL L L R G++ G + +
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
|
Length = 253 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 59/271 (21%), Positives = 89/271 (32%), Gaps = 90/271 (33%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG-----HELNEF 241
L +SG V+ + L+GP GAGK+TL+ +AG SG I + G E
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS----GSGSIQFAGQPLEAWSATEL 70
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
R AY+SQ M V L +PD
Sbjct: 71 ARHR--AYLSQQQTPPFAMPVWHYLTLH-------------------------QPDKT-- 101
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI---SGGQKKRVTTGEMLV 358
+ V L LD D++ R SGG+ +RV +++
Sbjct: 102 -------RTEL-----LNDVAGALALD--------DKLGRSTNQLSGGEWQRVRLAAVVL 141
Query: 359 G-------TANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALL 401
+L +DE LD + + + L + H L+ T L
Sbjct: 142 QITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHT-----L 196
Query: 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432
+ A LL G+++ G R+ VL
Sbjct: 197 RHA-------HRAWLLKRGKLLASGRREEVL 220
|
Length = 248 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.004
Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 56/256 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLAL-------AGKL---GKDLRASGKITYCGH 236
+ D + + +++G G+GK+T + L AG++ G+++ +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPV----- 63
Query: 237 ELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
EL E V ++ + Q MT+ + LG E R+EK
Sbjct: 64 ELRE-VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGW-------PEQERKEKA----- 110
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
++ LK++GL+ DE+ SGG ++RV
Sbjct: 111 ---LEL-------------------LKLVGLEEYEHRY-PDEL----SGGMQQRVGLARA 143
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
L ++L MDE + LD + LK++ L T IV + E + D I++
Sbjct: 144 LAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT-IVFITHDLDEAIRIGDRIVI 202
Query: 417 LSEGQIVYQGPRDNVL 432
+ G+IV G D +L
Sbjct: 203 MKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 46/236 (19%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-FVPQRTCAYISQ 252
+K M LLGP G GKTT++ +AG L K G+I G ++ + QR + Q
Sbjct: 29 IKQGTMVTLLGPSGCGKTTVLRLVAG-LEKP--TEGQIFIDGEDVTHRSIQQRDICMVFQ 85
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
M++ E + + + LGV E +R K+A ++ V +AG
Sbjct: 86 SYALFPHMSLGENVGYGLKMLGVPK-----EERKQRVKEA-----------LELVDLAGF 129
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
E V D+ ISGGQ++RV L+ VL DE +
Sbjct: 130 EDRYV-------------------DQ----ISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 373 LDSSTTFQICKFLKQMVHILDVT-MIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427
LD++ + + ++++ ++T + V Q E + + D +I++++G+I+ G
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQ--SEAFAVSDTVIVMNKGKIMQIGS 220
|
Length = 351 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.004
Identities = 56/246 (22%), Positives = 102/246 (41%), Gaps = 56/246 (22%)
Query: 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQ 252
V+ +LGP GAGK+TL+ +AG L SG +T G + P +R + + Q
Sbjct: 22 VERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQ 78
Query: 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312
+ +TV + + G+G L ++REK I A Q
Sbjct: 79 ENNLFSHLTVAQNI-------GLGLNPGLKLNAAQREKLHAI---------------ARQ 116
Query: 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372
+G++ + G +SGGQ++RV LV +L +DE +
Sbjct: 117 ------------MGIEDLLARLPGQ-----LSGGQRQRVALARCLVREQPILLLDEPFSA 159
Query: 373 LDSSTTFQICKFLKQMVHILDVTMIVA------LLQPAPETYDLFDDIILLSEGQIVYQG 426
LD + ++ + Q+ +T+++ + AP + +++++G+I + G
Sbjct: 160 LDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRS-------LVVADGRIAWDG 212
Query: 427 PRDNVL 432
P D +L
Sbjct: 213 PTDELL 218
|
Length = 232 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.004
Identities = 46/191 (24%), Positives = 71/191 (37%), Gaps = 44/191 (23%)
Query: 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT----TLMDVLAGRKTGGYIEGDIKIS 929
++ + +S G AL+G SG+GK+ +++ +L + G I
Sbjct: 17 HQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA-HPSGSILFD 75
Query: 930 GYPKNQETFARVS------------GYCEQNDIHS--PYVTVYESLLYSAWLRLSSDVDT 975
G E S G Q + S P T+ L LRL +
Sbjct: 76 G-----EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTI-GKQLAEV-LRLHRGLSR 128
Query: 976 KKRKMFVDEVMELVELKSLNDSMVGLPGVSG--------LSTEQRKRLTIAVELVANPSI 1027
+ +EL+EL VG+P LS QR+R+ IA+ L P +
Sbjct: 129 AAAR---ARALELLEL-------VGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 1028 IFMDEPTSGLD 1038
+ DEPT+ LD
Sbjct: 179 LIADEPTTALD 189
|
Length = 534 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.004
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 324 ILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQI 381
IL L DT VG+ RG+ SGGQK+R++ L+ A +L +D+ + +D T QI
Sbjct: 434 ILRLPQGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQI 490
Query: 382 CKFLKQMVH----ILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
L+Q I+ + AL + +I+++ G I +G D + +
Sbjct: 491 LHNLRQWGEGRTVIISAHRLSALTEA--------SEILVMQHGHIAQRGNHDQLAQ 538
|
Length = 569 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.004
Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 40/168 (23%)
Query: 898 LMGVSGAGKTTLMDVLAGRKT--GGYI--EGDIKISGY----PKNQE--TFARVS-GYCE 946
L+G +GAGK+TLM +L G G I E D+ ++ P+N E + V+ G E
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEE 93
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLN----DSMV-- 999
Q + Y+ Y +S V+T + ++E+ +L E L N ++ +
Sbjct: 94 QAE----YLKRYH--------DISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINE 141
Query: 1000 -----GLPGVSGLST----EQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
GL + LS+ RK + LV+NP ++ +DEPT+ LD
Sbjct: 142 VLAQLGLDPDAALSSLSGGWLRK-AALGRALVSNPDVLLLDEPTNHLD 188
|
Length = 635 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.004
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 1015 LTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
L + + S++ +DEP +GL + ++ ++ + G ++ T H P +
Sbjct: 201 LLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQLIFTTHSPLL 254
|
Length = 256 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 34/162 (20%)
Query: 895 LTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISG---YPKNQETFA--RVS 942
+TA +G SG GK+T++ D++ G + +EG + G Y + + R
Sbjct: 38 ITAFIGPSGCGKSTILRCFNRLNDLIPGFR----VEGKVTFHGKNLYAPDVDPVEVRRRI 93
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLR-LSSDVD-----TKKRKMFVDEVMELVELKSLND 996
G Q P ++Y+++ Y A + D+D + ++ DEV + L
Sbjct: 94 GMVFQKPNPFPK-SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKD-----KLKQ 147
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
S G+S LS Q++RL IA + P +I MDEP S LD
Sbjct: 148 S-----GLS-LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183
|
Length = 264 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1389 | |||
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-247 Score=2271.30 Aligned_cols=1274 Identities=54% Similarity=0.931 Sum_probs=1197.9
Q ss_pred cCchHhhHHHHHhhCCChhhhhhcccccccccCcccceeeccCCcChhhhHHHHHHHHhhhhhcHHHHHHHHHHHhhhcC
Q 000615 51 QDDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVG 130 (1389)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (1389)
+||||+|||||+|||||++| +++.+.. + .++|+.++++.+++.+.++..+..++|+|+++.++++|++++
T Consensus 12 ~~~e~~~~~a~~~~~pt~~~---~~~~~~~-~-----~~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~~r~~~~~~- 81 (1391)
T KOG0065|consen 12 DEDEEALRWAAIERLPTFDR---SLLRSIF-E-----SEVDVTKLDPDDDPKFIEKSSKHWEQDNEKLLEKLRERIDRV- 81 (1391)
T ss_pred chhHHHHHHHHHhcCccccc---hhhhhhc-c-----CcccccCCCcccchhHHHHhHHHHhhhHHHHHHHHHhhcCcc-
Confidence 45999999999999999999 5554321 1 259999999999999999999999999999999999999998
Q ss_pred CCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcCCCCcH
Q 000615 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (1389)
Q Consensus 131 ~~~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 210 (1389)
++|.++++++++.+++++..| ||+.|...+.++..+...+.. ++...+||+|+||.++||+|++++|||||||
T Consensus 82 -~~p~~~~~~~~~gv~a~~~~~----~t~~n~~~~~~~~~~~~~~~~--~~~~~~il~~~sg~~~pg~m~lvLG~pgsG~ 154 (1391)
T KOG0065|consen 82 -ELPTIEVRFSALGVEADVTYG----PTLVNILSNPLESILRMLGKR--KKKKIQILKDISGIIKPGEMTLVLGPPGSGK 154 (1391)
T ss_pred -cCCceEEEeeecccccccccc----hhhhhhhhhHHHHHhhhcccc--ccccceeecCcceeEcCCceEEEecCCCCch
Confidence 899999999999999998876 999999999999887766654 5566889999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHH
Q 000615 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (1389)
Q Consensus 211 STLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~ 290 (1389)
||||++|+|.++......|+|+|||++.+++.++++++|++|+|.|+|+|||||||+|+++|++++.|++ +..|+|+
T Consensus 155 ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVreTldFa~rck~~~~r~~---~~~R~e~ 231 (1391)
T KOG0065|consen 155 TTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVRETLDFAARCKGPGSRYD---EVSRREK 231 (1391)
T ss_pred HHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEeehhhHHHhccCCccccc---cccHHHH
Confidence 9999999999998877889999999999999999999999999999999999999999999999998887 6677776
Q ss_pred hcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCC
Q 000615 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (1389)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEpt 370 (1389)
+. ..+|++++++||++|+||+|||++.||+||||||||+||++++++++++||||+|
T Consensus 232 ~~-----------------------~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t 288 (1391)
T KOG0065|consen 232 LA-----------------------AMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEIT 288 (1391)
T ss_pred HH-----------------------HHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccc
Confidence 42 1579999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHH
Q 000615 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVAD 450 (1389)
Q Consensus 371 sgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~ad 450 (1389)
+|||++|+.++++.||+++|..+.|++++++||+++++++||+|++|++|+++|+||++++++||+++||+||+++++||
T Consensus 289 ~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~AD 368 (1391)
T KOG0065|consen 289 RGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGTAD 368 (1391)
T ss_pred ccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHH
Q 000615 451 FLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (1389)
Q Consensus 451 fl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 530 (1389)
|+++++++++++++|..+..|+.+.+++||.+.|..++.++++..+++.++++++.++.++..++|..+.|+|++.|+.|
T Consensus 369 fLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~~R 448 (1391)
T KOG0065|consen 369 FLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACTIR 448 (1391)
T ss_pred HHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 000615 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRD 610 (1389)
Q Consensus 531 ~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~ 610 (1389)
+|++++||.+++++++++.+++++++|++|+++++ .+..++..+.|++||++++.+|++++|+.++++++|||+|||+
T Consensus 449 ~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~--~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 449 EFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPM--STTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccC--cccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 99999999999999999999999999999999985 5667788999999999999999999999999999999999999
Q ss_pred CcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Q 000615 611 HLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLG 690 (1389)
Q Consensus 611 ~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~ 690 (1389)
..||++|++++|.+++++|++++++++|.+|+||++|+.+++++||.+|+.++++++++.++||+++++++++.+|+++|
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCccccCCCCCCC------------ccccccccc
Q 000615 691 TFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSI------------NQPTIGKVL 758 (1389)
Q Consensus 691 ~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~------------~~~~~G~~~ 758 (1389)
++.++++.+++||+|+..+||+||+|++|++|++|+++++++|||++++|+|.+.+|.+ ...+.|..+
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~~ 686 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRWPCSPSGPAYDNISIENKVCAATGATLGNDY 686 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccCCCCCCCCcccccccccccchhhccccCceE
Confidence 99999999999999999999999999999999999999999999999999998433321 235778999
Q ss_pred ccccCcc-----ccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccCcccchhhhhhccccc
Q 000615 759 LKIRGFS-----TESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSK 833 (1389)
Q Consensus 759 l~~~~~~-----~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 833 (1389)
++.+++. ...+|+|+++|+++||.++|++++++++.|+++....+..+..+..+........ . ...+..
T Consensus 687 v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~~~~~~~~~~~~~~-~---~~~~~~-- 760 (1391)
T KOG0065|consen 687 VSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILVFKKGKEKKKVKSA-G---SSSEIE-- 760 (1391)
T ss_pred EecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceeeeccchhhhcchhc-c---cccccc--
Confidence 9999887 7889999999999999999999999999999999988888776655443221100 0 000000
Q ss_pred ccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhh
Q 000615 834 TVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVL 913 (1389)
Q Consensus 834 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L 913 (1389)
........++++++.|+++..++++||.|.+++|-+++.+| +++++|+|||+.++||.++||||+||||||||||+|
T Consensus 761 ~~~~s~~~~~~~~~~~~~~~~~~~~~V~~w~dl~~~~~~qG---~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvL 837 (1391)
T KOG0065|consen 761 KLDDSSHQEKNKMVLPFTPLSLTFKDVFYWVDLPYEMPIQG---GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVL 837 (1391)
T ss_pred ccccccccccccccCCCccccccccceEEEEeCCccccccc---cceEhhhcCceEecCCceeehhcCCCCchHHHHHHH
Confidence 00011111356788899999999999999999998888776 678999999999999999999999999999999999
Q ss_pred cCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc
Q 000615 914 AGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993 (1389)
Q Consensus 914 ~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~ 993 (1389)
|||++.|.++|+|.+||+|++++.|+|.+|||+|+|+|.|.+||+|.|.|+|+||++.+++.+++.++|++|++.++|++
T Consensus 838 A~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~ 917 (1391)
T KOG0065|consen 838 AGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKE 917 (1391)
T ss_pred hcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHHhhCC-CCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHH
Q 000615 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANP-SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1072 (1389)
Q Consensus 994 ~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p-~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~ 1072 (1389)
++|.+||.+| +|||.+|||||+||++|++|| .||||||||||||++++..|++.+|+++++|+|||||+||||.++++
T Consensus 918 ~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife 996 (1391)
T KOG0065|consen 918 YADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFE 996 (1391)
T ss_pred hhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHH
Confidence 9999999999 999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred hhCeEEEEecCcEEEEecCCCcchhHHHHHHHhCCCCcccccccCcccchheeccccchhcccccHHHHHhhchHHHHHH
Q 000615 1073 AFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNK 1152 (1389)
Q Consensus 1073 ~~d~~l~l~~gG~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 1152 (1389)
.||++++|++||+++|.||+|++++++++||++++|++++++ .||||||||+++.+.+...+.||+++|++|+++++++
T Consensus 997 ~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~~-~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 997 AFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCISD-ENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred HHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCCC-CChHHHHHhhcccccccccCccHHHHHhccHHHHHHH
Confidence 999999999999999999999999999999999998865444 4999999999999988888999999999999999999
Q ss_pred HHHHhhCCCCCC-CCCCCCCCcCCCchHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhH
Q 000615 1153 ELIKELSTPPPG-SSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDL 1231 (1389)
Q Consensus 1153 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~ 1231 (1389)
+++++++.|+++ ..+..++++|++|+|.|++.|+|||+++|||+|+|+++|++++++.||++|++||+.|+ ++||+
T Consensus 1076 e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~l 1152 (1391)
T KOG0065|consen 1076 ELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGL 1152 (1391)
T ss_pred HHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHH
Confidence 999999999999 88899999999999999999999999999999999999999999999999999999995 78999
Q ss_pred HHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccch
Q 000615 1232 QNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWEL 1311 (1389)
Q Consensus 1232 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~ 1311 (1389)
+|.+|++|+++++.+.+++..++|.+..||.++||||++|||||.+|++||+++|+||+++++.+|++|+|+|+||++++
T Consensus 1153 qn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a 1232 (1391)
T KOG0065|consen 1153 QNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTA 1232 (1391)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhH
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCccccccccccccceEEeeecccCC
Q 000615 1312 GKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSVCAANKILVPYLIFHFYPCQFE 1389 (1389)
Q Consensus 1312 ~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~~~~~~~w~~~~sp~~ 1389 (1389)
.+|+||+++++++.+|++++|||+++++||.++|+++.+++++++++||||++|++.|| +||+||||+||+|
T Consensus 1233 ~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP------~fW~wmy~lsP~t 1304 (1391)
T KOG0065|consen 1233 SKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIP------KFWIWMYYLSPVT 1304 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhccccccccccc------ceeeeeeecCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999 9999999999975
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-225 Score=2235.10 Aligned_cols=1360 Identities=61% Similarity=1.049 Sum_probs=1217.8
Q ss_pred cccccccccccccCcccccccccccccccccccccCCCcccCCC--------CccCchHhhHHHHHhhCCChhhhhhccc
Q 000615 5 VADDLARSFSVRGGQSISSGSRRSWASASIREVWNAPDNVFSRS--------ERQDDEEELRWAAIERLPTYDRLKKGML 76 (1389)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (1389)
.|++|+||+| +++++ ++|.. +|+|++. ..|||||+|+|||+||||||+|+|++++
T Consensus 4 ~~~~~~~~~~----------~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (1470)
T PLN03140 4 RGGSMRRSIS----------RSVSR------SSRNM-EDVFSGGSQSRRRTSSVDEDEEALKWAAIEKLPTYSRLRTSIM 66 (1470)
T ss_pred CcccHHHHHH----------HHhhh------hhhhh-hhhhhccchhccccccccCChHhhhhHHhhhCCchhhhhhhhh
Confidence 5667999998 33322 33432 4666331 1278999999999999999999999999
Q ss_pred cccc-ccCccc---ceeeccCCcChhhhHHHHHHHHhhhhhcHHHHHHHHHHHhhhcCCCCCccEEEEeeeEEEEEEecC
Q 000615 77 NQVL-EDGKVV---KHEVDVSNLAVQDKKRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVG 152 (1389)
Q Consensus 77 ~~~~-~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~v~~~~l~v~~~~~~~ 152 (1389)
.+.. ++|... .+++|+++||.++++.++++++++.++|+++|++++++|.|++|+++|++||+|+||+|+++++++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~~~~~~ 146 (1470)
T PLN03140 67 KSFVENDVYGNQLLHKEVDVTKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRIDRVGIKLPTVEVRFEHLTVEADCYIG 146 (1470)
T ss_pred hcccccccccccccccccccccCChHHHHHHHHhhhcccchhHHHHHHHHHhhhccccCCCCCCeeEEeCCEEEEEecCC
Confidence 6421 122111 235999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEE
Q 000615 153 TRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKIT 232 (1389)
Q Consensus 153 ~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~ 232 (1389)
++.+||++|.+.+.++.+....+...+++.+++||+||||.++|||+++|+||||||||||||+|+|+++++.+++|+|+
T Consensus 147 ~~~~~t~~~~~~~~~~~~~~~~~~~~~k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~ 226 (1470)
T PLN03140 147 SRALPTLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEIT 226 (1470)
T ss_pred cccCCcHHHHHHHHHHHHHHHhccccCCCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEE
Confidence 99999999999999887766544433445578899999999999999999999999999999999999988777899999
Q ss_pred ECCeeCCCCCcCceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhcc
Q 000615 233 YCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQ 312 (1389)
Q Consensus 233 ~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~ 312 (1389)
|||+++++..+++.++||+|+|.|++++||+|||.|+++|++.+.++++..++.++|++.++.|+++++.++++....+.
T Consensus 227 ~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~ 306 (1470)
T PLN03140 227 YNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGV 306 (1470)
T ss_pred ECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcc
Confidence 99999987777788999999999999999999999999999877766666677788888888888888899999888887
Q ss_pred chhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhC
Q 000615 313 ETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL 392 (1389)
Q Consensus 313 ~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~ 392 (1389)
+.+..++++++.+||++|+||.||+++.|||||||||||+||++|+++|+++||||||+|||+.++.++++.|+++++..
T Consensus 307 ~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~ 386 (1470)
T PLN03140 307 KSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT 386 (1470)
T ss_pred hhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCC
Q 000615 393 DVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPY 472 (1389)
Q Consensus 393 ~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~ 472 (1389)
++|+|+++|||+++++++||+|++|++|+++|+||++++.+||+++||+||+++++|||+++++++++++++|.....|+
T Consensus 387 g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~ 466 (1470)
T PLN03140 387 EATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPY 466 (1470)
T ss_pred CCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999988888887766788
Q ss_pred CCCChhHHHHHHHhCccchhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Q 000615 473 RYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFM 552 (1389)
Q Consensus 473 ~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ 552 (1389)
++.++++|+++|++++.++++.++++.|.++++.++.....++|..++|+|++.|++|++++++||+..+++++++.+++
T Consensus 467 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ 546 (1470)
T PLN03140 467 RYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIV 546 (1470)
T ss_pred ccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 88899999999999999988888877777666666666666789999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHH
Q 000615 553 SLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISI 632 (1389)
Q Consensus 553 ali~~tvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~ 632 (1389)
|+++|++||+++++..+..++..+.|++||++++.++++++++..++.++|||+|||+.+||++|+|+++.++.++|+.+
T Consensus 547 ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~ 626 (1470)
T PLN03140 547 AAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISI 626 (1470)
T ss_pred HHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999876655566788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchh
Q 000615 633 LDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEP 712 (1389)
Q Consensus 633 ~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~ 712 (1389)
+++++|++|+|||+|+++++++||.++++++++++++.++|++++++++++.+|+++++++++++++|+||++++++||+
T Consensus 627 i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~ 706 (1470)
T PLN03140 627 IESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPN 706 (1470)
T ss_pred HHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHH
Q 000615 713 FLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAA 792 (1389)
Q Consensus 713 ~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~ 792 (1389)
||+|++|+||+.|+++++++|||.+.+|.+....+ ...+.|..+|+.+++..++.|+|++++++++++++|+++++++
T Consensus 707 w~~W~~yisp~~Ya~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~ 784 (1470)
T PLN03140 707 WWEWAYWVSPLSYGFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLA 784 (1470)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998886432221 2357899999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCCceeeeccchhhhcc--Cc----c-cchhh---hhh--cccc-------ccc-c-cccccccCccccccC
Q 000615 793 LAYLNPIGDSNSTVIEEDGEKQRAS--GH----E-AEGMQ---MAV--RSSS-------KTV-G-AAQNVTNRGMILPFQ 851 (1389)
Q Consensus 793 l~~~~~~~~~~~~~~~~~~~~~~~~--~~----~-~~~~~---~~~--~~~~-------~~~-~-~~~~~~~~g~~~~~~ 851 (1389)
+++.++..........+..+..... .. . .+... ... +... ... . .......+++.+|..
T Consensus 785 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 864 (1470)
T PLN03140 785 LTYLNPLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEAANGVAPKRGMVLPFT 864 (1470)
T ss_pred HHhcCccCCCCccccccchhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 9999876554443321111100000 00 0 00000 000 0000 000 0 001123346677888
Q ss_pred CceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCc
Q 000615 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1389)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1389)
|.+++|+|++|.++.+.+.++.+..++++++|+|||++++||+++||||||||||||||++|+|+.++|.++|+|.+||.
T Consensus 865 ~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~ 944 (1470)
T PLN03140 865 PLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGF 944 (1470)
T ss_pred cceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCc
Confidence 99999999999999887776666666777899999999999999999999999999999999999877778999999999
Q ss_pred cCChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 932 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
+.....+++.+|||+|+|.+++.+||+|+|.|++.+|.+.+.+.+++.++++++++.++|.+++|+.+|.+++++|||||
T Consensus 945 ~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGe 1024 (1470)
T PLN03140 945 PKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQ 1024 (1470)
T ss_pred cCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHH
Confidence 87655677889999999999999999999999998887666666667788999999999999999999988888999999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
||||+||++|+.+|+||||||||||||+.++..+++.|++++++|+|||||+|||+.++++.||++++|.+||+++|.||
T Consensus 1025 rkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~ 1104 (1470)
T PLN03140 1025 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGP 1104 (1470)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECC
Confidence 99999999999999999999999999999999999999999988999999999999778999999999988899999999
Q ss_pred CCcchhHHHHHHHhCCCCcccccccCcccchheeccccchhcccccHHHHHhhchHHHHHHHHHHhhCCCCCCCCCCCCC
Q 000615 1092 LGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYFP 1171 (1389)
Q Consensus 1092 ~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1171 (1389)
.+++++++++||++++|+++||+.+|||||++|+++...+...+.||++.|++|++++++++.+++++.++++.++..++
T Consensus 1105 ~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 1184 (1470)
T PLN03140 1105 LGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFA 1184 (1470)
T ss_pred cccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccC
Confidence 99888999999999988888999999999999998876655566799999999999999988888888877777676777
Q ss_pred CcCCCchHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHhHHHHHHHHHHHhhhh
Q 000615 1172 TKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAI 1251 (1389)
Q Consensus 1172 ~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 1251 (1389)
++|++++++|++.|+||+++++||||.|+++|+++++++|+++|++||+++++..+++++++++|++|++++|+++.+++
T Consensus 1185 ~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~ 1264 (1470)
T PLN03140 1185 TQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCS 1264 (1470)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999988778899999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHH
Q 000615 1252 SVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLY 1331 (1389)
Q Consensus 1252 ~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~ 1331 (1389)
+++|++..||+||+|||++|+|++++|++|++++|+||.++++++|++|+|||+||++++++||||+++++++.++++++
T Consensus 1265 ~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~ 1344 (1470)
T PLN03140 1265 TVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYY 1344 (1470)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCccccccccccccceEEeeecccCC
Q 000615 1332 GMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSVCAANKILVPYLIFHFYPCQFE 1389 (1389)
Q Consensus 1332 g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~~~~~~~w~~~~sp~~ 1389 (1389)
|+++++++||.++|++++++++++|++||||++|+++|| +||+|+||+||++
T Consensus 1345 g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP------~~~~W~~~isp~~ 1396 (1470)
T PLN03140 1345 GMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIP------KWWVWYYWICPVA 1396 (1470)
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCc------hHHHHHHHcCHHH
Confidence 999999999999999999999999999999999999999 9999999999974
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-178 Score=1786.54 Aligned_cols=1221 Identities=32% Similarity=0.548 Sum_probs=1012.3
Q ss_pred hcHHHHHHHHHHHhhhcCCCCC--ccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeee
Q 000615 113 EDNEKFLKRIRHRTDRVGIEIP--KIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDV 190 (1389)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~p--~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~v 190 (1389)
.|++++++.++++.++.+...| +++|+|+||+|++ ...+...+||+.|.+.+.......... ..+++++++||+||
T Consensus 3 f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~v~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~-~~~~~~~~~iL~~v 80 (1394)
T TIGR00956 3 FNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYG-VAADSDYQPTFPNALLKILTRGFRKLK-KFRDTKTFDILKPM 80 (1394)
T ss_pred CCHHHHHHHHHHHHhccccCCCCCeeeEEEECCEEEE-EeccccccCchHHHHHHHHHHHHHHhc-ccCCCCcceeeeCC
Confidence 4667777665555556555555 9999999999999 445666789999998886654332221 12344567899999
Q ss_pred EEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCCHHHHHH
Q 000615 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTVRETLD 267 (1389)
Q Consensus 191 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1389)
|+.++|||+++|+||||||||||||+|+|+.++. ...+|+|.+||+++++.. .++.++||+|+|.|++.+||+|||.
T Consensus 81 s~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~ 160 (1394)
T TIGR00956 81 DGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLD 160 (1394)
T ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHH
Confidence 9999999999999999999999999999997432 125999999999875432 2456999999999999999999999
Q ss_pred HhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhH
Q 000615 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1389)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1389)
|+++++.+..+.+ ...+.++ .+...+.+++.+||++++||.||++..|||||||
T Consensus 161 f~~~~~~~~~~~~---~~~~~~~-----------------------~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGe 214 (1394)
T TIGR00956 161 FAARCKTPQNRPD---GVSREEY-----------------------AKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGE 214 (1394)
T ss_pred HHHHhCCCCCCCC---CCCHHHH-----------------------HHHHHHHHHHHcCcccccCceeCCCcCCCCCccc
Confidence 9987764321100 0001110 0123466899999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecC
Q 000615 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1389)
Q Consensus 348 kqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~ 427 (1389)
||||+||++|+.+|+++||||||+|||+.++.++++.|+++++..++|+|+++|||+++++++||+|++|++|+++|+|+
T Consensus 215 rkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 215 RKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred chHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 99999999999999999999999999999999999999999986689999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcCCCCcc---
Q 000615 428 RDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKS--- 504 (1389)
Q Consensus 428 ~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~--- 504 (1389)
++++.+||+++||+||++.|+|||++++++++++. ++.. .+...+.+.++++++|++++.++++.++++.+.++.
T Consensus 295 ~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~-~~~~-~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 372 (1394)
T TIGR00956 295 ADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQ-IKPG-YEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSES 372 (1394)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhh-cccc-ccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccch
Confidence 99999999999999999999999999999876432 2111 111233568899999999988777666554322110
Q ss_pred ------------cCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 000615 505 ------------QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (1389)
Q Consensus 505 ------------~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~ 572 (1389)
...+.....++|..++|.|++.|++|+++.++||+..++.++++.+++|+++|++||+.+.+. .+
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~---~~ 449 (1394)
T TIGR00956 373 DTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPKNT---SD 449 (1394)
T ss_pred hhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCc---hh
Confidence 000112233567889999999999999999999999999999999999999999999987543 45
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchH
Q 000615 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1389)
Q Consensus 573 ~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1389)
.+.+.|++||++++.++.++.++...+.+|+||+|||..++|++++|+++..+.++|+.++.+++|++|+|||+|+++++
T Consensus 450 ~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~ 529 (1394)
T TIGR00956 450 FYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTA 529 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccH
Confidence 67789999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHH
Q 000615 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1389)
Q Consensus 653 ~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1389)
++||.++++.++...++.++++++++++++..+|+.+++++++++++++||+++.++||+||+|++|+||+.|++++++.
T Consensus 530 ~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~ 609 (1394)
T TIGR00956 530 GRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMV 609 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccCC--C-CC---------CCc---------ccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHH
Q 000615 733 NEFLGGRWDAQN--K-DP---------SIN---------QPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIA 791 (1389)
Q Consensus 733 nef~~~~~~~~~--~-~~---------~~~---------~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~ 791 (1389)
|||.+..++|.. + ++ ..| +.+.|+.+|+. ++.....|+|+++++++++.++|.+++++
T Consensus 610 nef~~~~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~-~~~~~~~~~w~n~gil~~~~v~f~~~~~l 688 (1394)
T TIGR00956 610 NEFHGRRFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKL-SFQYYNSHKWRNFGIIIGFTVFFFFVYIL 688 (1394)
T ss_pred hhhcCCcccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHh-cCCcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 999999998842 1 11 011 13467777774 44445678999999999999999999999
Q ss_pred HHHhcCCCCCCCceeeeccchhhhc--cCcccchhhhhhccccc-----ccccccccccC-ccccccCCceEEEecccee
Q 000615 792 ALAYLNPIGDSNSTVIEEDGEKQRA--SGHEAEGMQMAVRSSSK-----TVGAAQNVTNR-GMILPFQPLSLTFDNMSYF 863 (1389)
Q Consensus 792 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 863 (1389)
++++.++.................. .....+........... ......+.... ..........++|+|++|.
T Consensus 689 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~nl~~~ 768 (1394)
T TIGR00956 689 LTEFNKGAKQKGEILVFRRGSLKRAKKAGETSASNKNDIEAGEVLGSTDLTDESDDVNDEKDMEKESGEDIFHWRNLTYE 768 (1394)
T ss_pred HHHhccccCCCCceEeeccccccchhhcccccccccccccccccCCCCccccccccccccccccccCCCceEEEEeeEEE
Confidence 9999986544433322221111000 00000000000000000 00000000000 0000011235789999887
Q ss_pred eeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-eEEEEEEEcCccCChhhhhhee
Q 000615 864 VDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQETFARVS 942 (1389)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~~~~~~~~ 942 (1389)
++.. .+++.+|+|||++++|||++||||||||||||||++|+|+.++| +.+|+|.+||++... .+++.+
T Consensus 769 ~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~-~~~~~i 838 (1394)
T TIGR00956 769 VKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS-SFQRSI 838 (1394)
T ss_pred ecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-hhhcce
Confidence 6421 22467999999999999999999999999999999999987644 346999999998753 467889
Q ss_pred eEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh
Q 000615 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV 1022 (1389)
Q Consensus 943 gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~ 1022 (1389)
|||+|+|.+++.+||+|+|.|++.++.+.+.+.++++++++++++.++|.+++|+.+|.++. +|||||||||+||+||+
T Consensus 839 ~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~-~LSgGqrqRl~Ia~aL~ 917 (1394)
T TIGR00956 839 GYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGE-GLNVEQRKRLTIGVELV 917 (1394)
T ss_pred eeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCC-CCCHHHhhHHHHHHHHH
Confidence 99999999999999999999999888766666667778899999999999999999986543 89999999999999999
Q ss_pred hCCC-CceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCcchhHHHH
Q 000615 1023 ANPS-IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIE 1101 (1389)
Q Consensus 1023 ~~p~-illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~~~~~~~~ 1101 (1389)
.+|+ ||||||||||||+.++..|++.|++++++|+|||+|+|||+..+++.||++++|++||+++|.|+.+++++++++
T Consensus 918 ~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~~~~~~~~~ 997 (1394)
T TIGR00956 918 AKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIIN 997 (1394)
T ss_pred cCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcccccchHHH
Confidence 9997 999999999999999999999999998889999999999997678899999999987799999999988889999
Q ss_pred HHHhCCCCcccccccCcccchheeccccchhcccccHHHHHhhchHHHHHHHHHHhhCCCCCCCC---CCCCCCcCCCch
Q 000615 1102 YFEAVPGVPKIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSS---DLYFPTKYSQPF 1178 (1389)
Q Consensus 1102 ~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1178 (1389)
||+++ |.++||+++|||||++|+++...+.....++.+.|+.|+++++..+.++++..+..... +....++|+.|+
T Consensus 998 yf~~~-G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 1076 (1394)
T TIGR00956 998 YFEKH-GAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASL 1076 (1394)
T ss_pred HHHhc-CCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccccccccCCCH
Confidence 99987 66679999999999999987655444456899999999988877666655543322111 112234789999
Q ss_pred HHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHhHHHHHHHHHHHhhhhhhhhhHH
Q 000615 1179 LTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVIC 1258 (1389)
Q Consensus 1179 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 1258 (1389)
++|++.|++|+++++||||.|+.+|+++++++|+++|++||++++ ++++++|++|++|+++++.++.+ .+++|.|.
T Consensus 1077 ~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~---~~~~i~~~~g~~f~~~~~~~~~~-~~~~~~f~ 1152 (1394)
T TIGR00956 1077 WYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGT---SLQGLQNQMFAVFMATVLFNPLI-QQYLPPFV 1152 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCC---CHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHH
Confidence 999999999999999999999999999999999999999999987 57899999999999888887763 45678888
Q ss_pred HHHHHH-HHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccchhH-------HHHHHHHHHHHHHHHHH
Q 000615 1259 VERTVY-YRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGK-------FCLFFYFMWASFIIFTL 1330 (1389)
Q Consensus 1259 ~er~v~-~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~-------f~~~~~~~~~~~~~~~~ 1330 (1389)
.||.+| +|||++|+|++.+|++|++++|+|+.++++++|++|+|||+||++++.. |++|+++++++.+++++
T Consensus 1153 ~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s 1232 (1394)
T TIGR00956 1153 AQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFST 1232 (1394)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 888885 9999999999999999999999999999999999999999999988876 99999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCccccccccccccceEEeeecccCC
Q 000615 1331 YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSVCAANKILVPYLIFHFYPCQFE 1389 (1389)
Q Consensus 1331 ~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~~~~~~~w~~~~sp~~ 1389 (1389)
+|+++++++||.++|+.+++++++++++||||++|+++|| .||+|+||+||++
T Consensus 1233 ~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip------~~~~w~~~~sp~~ 1285 (1394)
T TIGR00956 1233 LGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMP------GFWIFMYRCSPFT 1285 (1394)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCc------HHHhHHHhcCHHH
Confidence 9999999999999999999999999999999999999999 9999999999974
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-85 Score=822.56 Aligned_cols=515 Identities=26% Similarity=0.468 Sum_probs=436.4
Q ss_pred CCceEEEeccceeeeccc----------------cccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhc
Q 000615 851 QPLSLTFDNMSYFVDMPA----------------EMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~ 914 (1389)
.+..++|.|++|.++... ..++..+.++++.+|+|||++++|||++||+|||||||||||++|+
T Consensus 36 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLa 115 (659)
T PLN03211 36 YPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALA 115 (659)
T ss_pred CceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHh
Confidence 367899999999886542 1112223445678999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc
Q 000615 915 GRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994 (1389)
Q Consensus 915 g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~ 994 (1389)
|+..++..+|+|.+||.+.... .++.+|||+|++.+++.+||+|++.|++.++.+.+...+++.++++++++.+||.++
T Consensus 116 G~~~~~~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~ 194 (659)
T PLN03211 116 GRIQGNNFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKC 194 (659)
T ss_pred CCCCCCceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh
Confidence 9866544689999999986543 345689999999999999999999998877765555556667789999999999999
Q ss_pred ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhh
Q 000615 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF 1074 (1389)
Q Consensus 995 ~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1074 (1389)
+|+.+|+...++|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.|
T Consensus 195 ~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~ 274 (659)
T PLN03211 195 ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMF 274 (659)
T ss_pred cCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhh
Confidence 99999987788999999999999999999999999999999999999999999999998889999999999987789999
Q ss_pred CeEEEEecCcEEEEecCCCcchhHHHHHHHhCCCCcccccccCcccchheeccccchhc-----c----cccHHHHHhhc
Q 000615 1075 DELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNISVENQ-----L----GIDFAEVYADS 1145 (1389)
Q Consensus 1075 d~~l~l~~gG~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~~~~~-----~----~~~~~~~~~~s 1145 (1389)
|++++|+ +|+++|.|+. +++.+||+++ |. +||+++|||||++|+++...... . .....+.|++.
T Consensus 275 D~iilL~-~G~iv~~G~~----~~~~~~f~~~-G~-~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 347 (659)
T PLN03211 275 DSVLVLS-EGRCLFFGKG----SDAMAYFESV-GF-SPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTL 347 (659)
T ss_pred ceEEEec-CCcEEEECCH----HHHHHHHHHC-CC-CCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhh
Confidence 9999998 5899999986 5789999999 54 58999999999999987532100 0 01122344321
Q ss_pred hHHHHHHHHHHhh--CC-CCC-----CCCCCC-CCCcCCCchHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHH
Q 000615 1146 SLHQRNKELIKEL--ST-PPP-----GSSDLY-FPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGL 1216 (1389)
Q Consensus 1146 ~~~~~~~~~~~~~--~~-~~~-----~~~~~~-~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~ 1216 (1389)
. .++..+.++.. .. +.+ ..+... ..+.+..+|++|+.+|++|++++ ||++.+..+|+++++++|+++|+
T Consensus 348 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~ 425 (659)
T PLN03211 348 L-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGL 425 (659)
T ss_pred c-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111110 00 000 000000 11235678999999999999998 99999999999999999999999
Q ss_pred HhccCCCCCCCHhhHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Q 000615 1217 IYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVV 1296 (1389)
Q Consensus 1217 ~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~ 1296 (1389)
+||+++ ..+++++.|++|++++++++.+++.++|.|+.||+||+|||.+|+|++++|++|++++|+|+.++.+++
T Consensus 426 lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~i 500 (659)
T PLN03211 426 MWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTI 500 (659)
T ss_pred HHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875 467899999999999998888888889999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCccccccccccc
Q 000615 1297 YVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSVCAANKILV 1376 (1389)
Q Consensus 1297 ~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~~~ 1376 (1389)
|++|+|||+|+++++.+||+|+++++++.++++++|+++++++||.++|+.++++++.++++||||+++ +||
T Consensus 501 f~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip------ 572 (659)
T PLN03211 501 FLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLP------ 572 (659)
T ss_pred HHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hch------
Confidence 999999999999999999999999999999999999999999999999999999999999999999997 799
Q ss_pred cceEEeeecccC
Q 000615 1377 PYLIFHFYPCQF 1388 (1389)
Q Consensus 1377 ~~~~w~~~~sp~ 1388 (1389)
+||+|++|+||+
T Consensus 573 ~~~~W~~ylS~~ 584 (659)
T PLN03211 573 SCMAWIKYISTT 584 (659)
T ss_pred HHHHHHHHhCHH
Confidence 999999999996
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-85 Score=817.71 Aligned_cols=508 Identities=34% Similarity=0.614 Sum_probs=447.2
Q ss_pred CCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-eEEEEEEEc
Q 000615 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKIS 929 (1389)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~ 929 (1389)
.+..++|+|+++..+.+.. ..+++|+|||++++|||++||||||||||||||++|+|+..+| ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~~--------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKSK--------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCCC--------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 4567899999887654321 3578999999999999999999999999999999999998764 789999999
Q ss_pred CccCChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 930 GYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 930 g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
|++...+.+++.+|||.|+|.++|++||+|+|.|+|.+|++.+.+.++++++|+++++.+||.+++|+++|.++.+++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 99888888999999999999999999999999999999999988899999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||||+||.+|+.||+||||||||||||+.++..++++|+++|++|+|||||+|||+.++++.||++++|.+ |+++|.
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~-G~~vy~ 252 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSE-GEVVYS 252 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcC-CcEEEe
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999996 799999
Q ss_pred cCCCcchhHHHHHHHhCCCCcccccccCcccchheecccc--chhcc----cccHHHHHhhchHHHHHH-HHHHhhCCCC
Q 000615 1090 GPLGHESHKLIEYFEAVPGVPKIKEAYNPATWMLEVSNIS--VENQL----GIDFAEVYADSSLHQRNK-ELIKELSTPP 1162 (1389)
Q Consensus 1090 g~~~~~~~~~~~~f~~~~~~~~~~~~~npa~~~l~~~~~~--~~~~~----~~~~~~~~~~s~~~~~~~-~~~~~~~~~~ 1162 (1389)
|+. +++.+||+++ |.| ||+.+||+||.+|+.+.. .+... .....+.++......+.. +..+.+....
T Consensus 253 G~~----~~~~~ff~~~-G~~-~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (613)
T KOG0061|consen 253 GSP----RELLEFFSSL-GFP-CPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSK 326 (613)
T ss_pred cCH----HHHHHHHHhC-CCC-CCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhccccc
Confidence 997 5789999999 654 999999999999988742 11000 000111111011111110 0011111111
Q ss_pred CCCCCCCCCCcCCCchHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHhHHHHHH
Q 000615 1163 PGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSIC 1242 (1389)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1242 (1389)
..+.....+||.|+..+++|.+++.+|+|.+...|+++.+++|+++|++||+.++ +..+++++.|++|+.+
T Consensus 327 ------~~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~---~~~~~~~~~g~~~~~~ 397 (613)
T KOG0061|consen 327 ------KVEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGN---DAKGIQNRLGLFFFIL 397 (613)
T ss_pred ------ccccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCC---chHHHHHHHHHHHHHH
Confidence 1111127899999999999999999999999999999999999999999999976 4556679999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHH
Q 000615 1243 IFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMW 1322 (1389)
Q Consensus 1243 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1322 (1389)
.++.+..+...++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++...|++|+++++
T Consensus 398 ~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~ 477 (613)
T KOG0061|consen 398 SFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIIL 477 (613)
T ss_pred HHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99988888888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCccccccccccccceEEeeecccC
Q 000615 1323 ASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSVCAANKILVPYLIFHFYPCQF 1388 (1389)
Q Consensus 1323 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~~~~~~~w~~~~sp~ 1388 (1389)
+..+.+.++|++++++.||...|..+++++...+++|+||+++.++|| .||+|++|+|++
T Consensus 478 ~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip------~~~~w~~~~S~~ 537 (613)
T KOG0061|consen 478 LSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIP------KYFRWISYLSYF 537 (613)
T ss_pred HHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCccccc------HHHHHHHHHhHH
Confidence 999999999999999999999999999999999999999999999999 999999999875
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-83 Score=807.47 Aligned_cols=494 Identities=33% Similarity=0.539 Sum_probs=439.7
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-eEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCH
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
++.+|+|||++++|||++||+|||||||||||++|+|+.+++ ..+|+|.+||.+.+...+++.+|||+|+|.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999986543 3589999999988766778889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC-CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG-VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~-~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1036 (1389)
+|||.|++.++.+.+...+++++.++++++.++|.+++|+.+|.++ .++|||||||||+||+||+.+|++|||||||+|
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 9999999998887766677778889999999999999999999754 578999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCcchhHHHHHHHhCCCCccccccc
Q 000615 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIKEAY 1116 (1389)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~~~~~~~~~f~~~~~~~~~~~~~ 1116 (1389)
||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+ +|+++|.|+. +++.+||+++ |. +||++.
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~-~G~~v~~G~~----~~~~~~f~~~-g~-~~p~~~ 269 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMA-EGRVAYLGSP----DQAVPFFSDL-GH-PCPENY 269 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEee-CCeEEEECCH----HHHHHHHHHc-CC-CCCCCC
Confidence 999999999999999998899999999999888999999999998 5899999996 5789999998 54 699999
Q ss_pred Ccccchheeccccchhcc-----cccHHHHHhhchHHHHHHHHHHhhCCCCCC---CCCCCCCCcCCCchHHHHHHHHHH
Q 000615 1117 NPATWMLEVSNISVENQL-----GIDFAEVYADSSLHQRNKELIKELSTPPPG---SSDLYFPTKYSQPFLTQFRACFWK 1188 (1389)
Q Consensus 1117 npa~~~l~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~q~~~l~~R 1188 (1389)
|||||++++++...+... ..++.+.|+.|+.+++..+.......+.++ ..+....++|..+++.|+..|++|
T Consensus 270 n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R 349 (617)
T TIGR00955 270 NPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASWWTQFYALLKR 349 (617)
T ss_pred ChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCHHHHHHHHHHH
Confidence 999999999765432211 124556677776665544333322111111 111112346789999999999999
Q ss_pred HHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Q 000615 1189 QYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRER 1268 (1389)
Q Consensus 1189 ~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~er~v~~rE~ 1268 (1389)
+++.+||||.++.+|+++++++|+++|++||+++. ++++++++.|++|++++++++.++..+++.++.||.+|+||+
T Consensus 350 ~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~---~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~ 426 (617)
T TIGR00955 350 SWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGL---TQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRET 426 (617)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999986 467899999999999999999887788899999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000615 1269 AAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIV 1348 (1389)
Q Consensus 1269 ~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~A~~~ 1348 (1389)
.+|+|++.+|++|++++|+|+.++.+++|++|+|||+|+++++..||+|+++++++.++++++|+++++++||..+|..+
T Consensus 427 ~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~ 506 (617)
T TIGR00955 427 RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTV 506 (617)
T ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCccccccccccccceEEeeecccC
Q 000615 1349 LSFFLSVWNLFSGFLVARSVCAANKILVPYLIFHFYPCQF 1388 (1389)
Q Consensus 1349 ~~~~~~~~~lf~Gf~i~~~~ip~~~~~~~~~~w~~~~sp~ 1388 (1389)
+++++.++++|+||+++.++|| +||+|++|+||+
T Consensus 507 ~~~~~~~~~lf~G~~i~~~~ip------~~~~W~~~isp~ 540 (617)
T TIGR00955 507 GPPFVIPFLLFGGFFINSDSIP------VYFKWLSYLSWF 540 (617)
T ss_pred HHHHHHHHHHHhhcccChhhcc------HHHHHHHHcCHH
Confidence 9999999999999999999999 999999999996
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-80 Score=771.82 Aligned_cols=585 Identities=29% Similarity=0.497 Sum_probs=491.2
Q ss_pred CCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHH
Q 000615 133 IPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTT 212 (1389)
Q Consensus 133 ~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKST 212 (1389)
...++++|+|+++++... .+..+++|+||||+++|||++||+||+||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~~-----------------------------~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtT 71 (613)
T KOG0061|consen 21 LEPVKLSFRNLTLSSKEK-----------------------------SKKTKTILKGVSGTAKPGELLAIMGPSGSGKTT 71 (613)
T ss_pred cccceeEEEEEEEEecCC-----------------------------CCccceeeeCcEEEEecCeEEEEECCCCCCHHH
Confidence 356789999999986431 114578999999999999999999999999999
Q ss_pred HHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhc
Q 000615 213 LMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292 (1389)
Q Consensus 213 LL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~ 292 (1389)
||++|+|+.+++..++|+|++||++.+....++.+|||.|+|.++|++||+|||.|+|.++.+.. +++.|+
T Consensus 72 LL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~-------~~~~~k-- 142 (613)
T KOG0061|consen 72 LLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSS-------LSKEEK-- 142 (613)
T ss_pred HHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCC-------CCHHHH--
Confidence 99999999987667899999999887777778899999999999999999999999999876542 222222
Q ss_pred CCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCC
Q 000615 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTG 372 (1389)
Q Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsg 372 (1389)
+.++|.+++.|||.+|+||+||+...|||||||||||+||..|+.+|+||||||||||
T Consensus 143 ----------------------~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSG 200 (613)
T KOG0061|consen 143 ----------------------RERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200 (613)
T ss_pred ----------------------HHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCC
Confidence 3468999999999999999999988899999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000615 373 LDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1389)
Q Consensus 373 LDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl 452 (1389)
||+.++.++++.|+++|+. |+|||+++|||+.+++++||++++|++|+++|+|+++++.+||+++|++||++.||+||+
T Consensus 201 LDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~ 279 (613)
T KOG0061|consen 201 LDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPRELLEFFSSLGFPCPELENPADFL 279 (613)
T ss_pred cchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHHHHHHHhCCCCCCCcCChHHHH
Confidence 9999999999999999997 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcc--chhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHH
Q 000615 453 QEVTSKK--DQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAR 530 (1389)
Q Consensus 453 ~~v~s~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R 530 (1389)
.++.+.. .+...... ......+.++..+...+......... .+ ..........++|.|+..+++|
T Consensus 280 l~l~s~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~s~~~q~~~L~~R 346 (613)
T KOG0061|consen 280 LDLLSVDSGTRELEEAV--------RIAKLINKFSQTDNLKKTLEALEKSL----ST-SKKVEIGTSPSWWTQFKILLKR 346 (613)
T ss_pred HHHHccCCCchhHHhHH--------HHHHHhhhccccchhhhhHHHHhhhc----cc-ccccccccCCcHHHHHHHHHHH
Confidence 9988743 11100000 00000111110000000000000000 00 0000111167899999999999
Q ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhhh
Q 000615 531 EWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRLPIFYKQR 609 (1389)
Q Consensus 531 ~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~-~~~~~~~~~~vf~k~r 609 (1389)
.+..++|++.....|.+|.+++++++|++||+.+.+.. +.....|.+|+.+....+..+. .+.....++++|.||+
T Consensus 347 ~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~---~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~ 423 (613)
T KOG0061|consen 347 SLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAK---GIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRET 423 (613)
T ss_pred HhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999864332 3346788888888888676665 5888899999999999
Q ss_pred cCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 000615 610 DHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTL 689 (1389)
Q Consensus 610 ~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~ 689 (1389)
..+.|+.++|+++..+.++|+.++.+++|..++|||+|++++..+|+.+.+..++...++.+++.+++++.++...|.++
T Consensus 424 ~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~ 503 (613)
T KOG0061|consen 424 SSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSL 503 (613)
T ss_pred hcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccccccccccccCccccCc
Q 000615 690 GTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESN 769 (1389)
Q Consensus 690 ~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~ 769 (1389)
++++++.+++++||+++.+.+|+||.|+.|+|+..|++++++.|||.+....|....+ .++...|..++...++...+
T Consensus 504 ~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~- 581 (613)
T KOG0061|consen 504 GPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSGGSSRCFLSGN-LCCESTGEDVLKQLGFEDSS- 581 (613)
T ss_pred HHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhccccccccCcC-CcccccHHHHHHhcCCcccc-
Confidence 9999999999999999999999999999999999999999999999873333322111 24566777888888876544
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000615 770 WYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1389)
Q Consensus 770 ~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1389)
.|.++.++.++.++|.+++++++++..
T Consensus 582 -~~~~l~~l~~~~~~~~il~y~~L~~~~ 608 (613)
T KOG0061|consen 582 -FWLDLLVLLAFIVFFRVLGYLALRFRV 608 (613)
T ss_pred -cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 689999999999999999999998754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-79 Score=777.30 Aligned_cols=572 Identities=26% Similarity=0.464 Sum_probs=482.5
Q ss_pred cccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCC
Q 000615 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l 260 (1389)
+.+++||+|+|++++|||+++|+|||||||||||++|+|+.+++...+|+|.+||++++....++.++||+|+|.+++.+
T Consensus 35 ~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l 114 (617)
T TIGR00955 35 RPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTL 114 (617)
T ss_pred cCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccC
Confidence 34577999999999999999999999999999999999998775456899999999886544567899999999999999
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc-
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM- 339 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~- 339 (1389)
||+|||.|+++++.+... .+.+ ....++.+++.+||++++||.||++.
T Consensus 115 TV~e~l~f~~~~~~~~~~-------~~~~------------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~ 163 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRV-------TKKE------------------------KRERVDEVLQALGLRKCANTRIGVPGR 163 (617)
T ss_pred cHHHHHHHHHhcCCCCCC-------CHHH------------------------HHHHHHHHHHHcCchhcCcCccCCCCC
Confidence 999999999877643210 1111 12246789999999999999999864
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
.|||||||||||+||++|+.+|+++||||||+|||+.++.++++.|+++++ .++|+|+++|||+.+++++||++++|++
T Consensus 164 ~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~ 242 (617)
T TIGR00955 164 VKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAE 242 (617)
T ss_pred CCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeC
Confidence 789999999999999999999999999999999999999999999999986 4899999999999999999999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 420 G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
|+++|+|+++++.+||+++|++||++.|++||+.++++....... . .....+++.+.|+.+...++..+....
T Consensus 243 G~~v~~G~~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~s~~~~~~~~~~~~ 315 (617)
T TIGR00955 243 GRVAYLGSPDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSEN-----E--SRERIEKICDSFAVSDIGRDMLVNTNL 315 (617)
T ss_pred CeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCccccc-----c--hHHHHHHHHHHHhcchhhHHHHHHhhh
Confidence 999999999999999999999999999999999998765422110 0 011234556666665554444333221
Q ss_pred CCCccc---CCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchh
Q 000615 500 PYDKSQ---AHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (1389)
Q Consensus 500 ~~~~~~---~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~ 576 (1389)
...... .........++..+++.|+..+++|.++..+||+..+..+.++.+++++++|++|++.+.+. .+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~---~~~~~~ 392 (617)
T TIGR00955 316 WSGKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQ---KGVQNI 392 (617)
T ss_pred hhccccccccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCH---HHHHHH
Confidence 111100 00011122456788999999999999999999999999999999999999999999976543 345667
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHH
Q 000615 577 FGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRF 655 (1389)
Q Consensus 577 ~g~lff~ll~~~~~~~-~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~f 655 (1389)
.|++|+.++...|..+ ..+.....++++|+|||..++|++++|++++.+.++|+.++.+++|++++||++|+++++.+|
T Consensus 393 ~g~lf~~~~~~~f~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f 472 (617)
T TIGR00955 393 NGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHF 472 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHH
Confidence 8899999888887765 445667789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHh
Q 000615 656 FKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEF 735 (1389)
Q Consensus 656 f~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef 735 (1389)
|.++++.++...++.+++.++++++++..+|..+++++++++++++||+++.++||+||+|++|+||+.|++++++.|||
T Consensus 473 ~~f~l~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef 552 (617)
T TIGR00955 473 LTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQW 552 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc-ccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhc
Q 000615 736 LGGRW-DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYL 796 (1389)
Q Consensus 736 ~~~~~-~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~ 796 (1389)
.+..+ .|...+....+...|..+++.+|+..+ ++|.++++++++.++|.++++++|++.
T Consensus 553 ~~~~~~~c~~~~~~~~c~~~g~~~l~~~g~~~~--~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 553 SDVDNIECTSANTTGPCPSSGEVILETLSFRNA--DLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred CCCccccccCcCcCCCCCcChHHHHHhcCCCcc--cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88776 443222111234468889998888664 458999999999999999999999864
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-78 Score=763.17 Aligned_cols=610 Identities=20% Similarity=0.335 Sum_probs=472.0
Q ss_pred CCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcCCCCcHH
Q 000615 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKT 211 (1389)
Q Consensus 132 ~~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKS 211 (1389)
..+.++++|.|+++.+.......+... ....+...-...+...+ ..++++|+|||++++|||+++|+||||||||
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~-~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKS 108 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSN----IKRILGHKPKISDETRQ-IQERTILNGVTGMASPGEILAVLGPSGSGKS 108 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccc----ccccccccccccccccc-CCCCeeeeCCEEEEECCEEEEEECCCCCCHH
Confidence 345789999999998753210111110 11111000001111112 2346799999999999999999999999999
Q ss_pred HHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHh
Q 000615 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291 (1389)
Q Consensus 212 TLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~ 291 (1389)
|||++|+|+++++ ..+|+|.+||+++... .++.++||+|++.+++.+||+||+.|++.++.+.. ..+.+
T Consensus 109 TLL~iLaG~~~~~-~~sG~I~inG~~~~~~-~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~-------~~~~~-- 177 (659)
T PLN03211 109 TLLNALAGRIQGN-NFTGTILANNRKPTKQ-ILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKS-------LTKQE-- 177 (659)
T ss_pred HHHHHHhCCCCCC-ceeEEEEECCEECchh-hccceEEECcccccCCcCCHHHHHHHHHHhCCCCC-------CCHHH--
Confidence 9999999998764 2589999999987542 23569999999999999999999999865532210 00001
Q ss_pred cCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCC
Q 000615 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIST 371 (1389)
Q Consensus 292 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEpts 371 (1389)
....++.+++.+||++++||.+|+...++|||||||||+||++|+.+|+||+|||||+
T Consensus 178 ----------------------~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPts 235 (659)
T PLN03211 178 ----------------------KILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTS 235 (659)
T ss_pred ----------------------HHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCC
Confidence 1123677899999999999999998899999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHH
Q 000615 372 GLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADF 451 (1389)
Q Consensus 372 gLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adf 451 (1389)
|||+.++.++++.|+++++ .++|+|+++|||+.+++++||+|++|++|+++|+|+++++.+||+++||+||++.|||||
T Consensus 236 gLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf 314 (659)
T PLN03211 236 GLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADF 314 (659)
T ss_pred CcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHH
Confidence 9999999999999999987 489999999999988999999999999999999999999999999999999999999999
Q ss_pred HHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC---CCCccc------CCCCccccCcccCCHHH
Q 000615 452 LQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV---PYDKSQ------AHPASLVKEKYGISKWE 522 (1389)
Q Consensus 452 l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~---~~~~~~------~~~~~~~~~~~~~s~~~ 522 (1389)
+.++++...+.........+ ...+.+.+.|++.. .+...+.... +....+ ..........+..++|.
T Consensus 315 ~ldv~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 390 (659)
T PLN03211 315 LLDLANGVCQTDGVSEREKP---NVKQSLVASYNTLL-APKVKAAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFN 390 (659)
T ss_pred HHHHcCccccCCCccccccc---hHHHHHHHHHHhhc-cHHHHHHHhhhhhhcchhhhhhcccccccccCCCccCCCHHH
Confidence 99998764321100000000 01123334443211 1111111100 000000 00000011224467899
Q ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 000615 523 LFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMF-NGFAENAMTVLR 601 (1389)
Q Consensus 523 ~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~-~~~~~~~~~~~~ 601 (1389)
|+..+++|.+.. +|+......|+++.+++|+++|++||+.+ ..+.+.+.|++||.+++.++ +.+..+..+..+
T Consensus 391 Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~~-----~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~e 464 (659)
T PLN03211 391 QFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHSD-----FRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQE 464 (659)
T ss_pred HHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888 78888778999999999999999999864 23457789999999877554 556778888899
Q ss_pred hhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000615 602 LPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGR 681 (1389)
Q Consensus 602 ~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~ 681 (1389)
+++|+|||..++|++++|++++++.++|+.++.+++|++++|||+|+++++++|+.+++++++...++.+++.+++++++
T Consensus 465 r~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~ 544 (659)
T PLN03211 465 RAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIM 544 (659)
T ss_pred hHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCcc-----ccCCCCCCCccccccc
Q 000615 682 TEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRW-----DAQNKDPSINQPTIGK 756 (1389)
Q Consensus 682 ~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~-----~~~~~~~~~~~~~~G~ 756 (1389)
+..+|+++++++.+++++|+||+++ +||+||+|++|+||+.|+++++++|||.+.+. +|.... +....+.
T Consensus 545 ~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~---~~~~~~c 619 (659)
T PLN03211 545 DAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPH---GSDRASC 619 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccccccCCCCcc---cCCCCCC
Confidence 9999999999999999999999997 79999999999999999999999999976542 332211 0001111
Q ss_pred ccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000615 757 VLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLN 797 (1389)
Q Consensus 757 ~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~ 797 (1389)
.++....+. ....|.++++|+++.++|.++.++++++.+
T Consensus 620 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 620 KFVEEDVAG--QISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred ccchhhhhc--ccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122222222 234788999999999999999999998654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-79 Score=826.30 Aligned_cols=495 Identities=22% Similarity=0.381 Sum_probs=433.0
Q ss_pred ccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--ceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCC
Q 000615 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 878 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~ 953 (1389)
.++.+|+|||+.++|||+++|+||||||||||||+|+|+..+ .+.+|+|.+||.+... ..+++.++||+|+|.++|
T Consensus 72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~ 151 (1394)
T TIGR00956 72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFP 151 (1394)
T ss_pred CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCC
Confidence 456799999999999999999999999999999999997532 2468999999987642 234566999999999999
Q ss_pred CCCHHHHHHHHHHhhcCC----CCcHHHHHHH-HHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 000615 954 YVTVYESLLYSAWLRLSS----DVDTKKRKMF-VDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~----~~~~~~~~~~-v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~il 1028 (1389)
.+||+|+|.|++.++.+. +...+++.+. ++++++.+||.+++|+.+|+..+++|||||||||+||++|+.+|+||
T Consensus 152 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 152 HLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred CCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 999999999998877543 2233443333 57799999999999999998888999999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCcchhHHHHHHHhCC
Q 000615 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVP 1107 (1389)
Q Consensus 1029 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~~~~~~~~~f~~~~ 1107 (1389)
+|||||+|||+.++..+++.|++++++ |+|||+++|||+.++++.||++++|.+ |+++|.|+. +++.+||+++
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~-G~iv~~G~~----~~~~~yF~~l- 305 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYE-GYQIYFGPA----DKAKQYFEKM- 305 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeC-CeEEEECCH----HHHHHHHHHc-
Confidence 999999999999999999999999874 999999999998789999999999985 899999986 5789999999
Q ss_pred CCcccccccCcccchheeccccchh----------cccccHHHHHhhchHHHHHHHHHHhhCCCC---------------
Q 000615 1108 GVPKIKEAYNPATWMLEVSNISVEN----------QLGIDFAEVYADSSLHQRNKELIKELSTPP--------------- 1162 (1389)
Q Consensus 1108 ~~~~~~~~~npa~~~l~~~~~~~~~----------~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--------------- 1162 (1389)
|. +||+++|||||+++++++.... ....++++.|++|+.+++..+.++......
T Consensus 306 G~-~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (1394)
T TIGR00956 306 GF-KCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVA 384 (1394)
T ss_pred CC-CCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHh
Confidence 55 6999999999999998754211 112478999999998876655543321110
Q ss_pred CCCCCCCCCCcCCCchHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHhccCCCCCCCHhhHHHHHhHHHHHH
Q 000615 1163 PGSSDLYFPTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSIC 1242 (1389)
Q Consensus 1163 ~~~~~~~~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~~~g~~~~~~ 1242 (1389)
..++.....+.|..|+++|+++|++|+++.+||||.++.+|+++++++|+++|++||++++ ++++++++.|++|+++
T Consensus 385 ~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~---~~~~~~~r~g~lf~~~ 461 (1394)
T TIGR00956 385 KQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNLPK---NTSDFYSRGGALFFAI 461 (1394)
T ss_pred hhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCC---CchhHHHHHHHHHHHH
Confidence 0001122234688999999999999999999999999999999999999999999999986 4578899999999999
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccchhHHHHHHHHHH
Q 000615 1243 IFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAVEIIYVSVQSVVYVLILYAMIGFKWELGKFCLFFYFMW 1322 (1389)
Q Consensus 1243 ~~~~~~~~~~~~~~~~~er~v~~rE~~~~~Y~~~~y~~a~~~~e~p~~~~~~~~~~~i~Y~~~g~~~~~~~f~~~~~~~~ 1322 (1389)
++.+++++..+ +.+..||+||+|||.+|+|++++|++|++++|+|+.++.+++|++|+|||+||+++++.||.|+++++
T Consensus 462 ~~~~~~~~~~i-~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~ 540 (1394)
T TIGR00956 462 LFNAFSSLLEI-ASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILF 540 (1394)
T ss_pred HHHHHHHHHHH-HHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHH
Confidence 99999876554 55667999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccccCccccccccccccceEEeeecccCC
Q 000615 1323 ASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSVCAANKILVPYLIFHFYPCQFE 1389 (1389)
Q Consensus 1323 ~~~~~~~~~g~~~~~~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~ip~~~~~~~~~~w~~~~sp~~ 1389 (1389)
++.++++++++++++++||..+|+.++++++.++++|+||++|+++|| +||+|++|+||++
T Consensus 541 l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp------~~~~W~~yisp~~ 601 (1394)
T TIGR00956 541 ICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSML------GWSKWIYYVNPLA 601 (1394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhcc------HHHHHHHHcCHHH
Confidence 999999999999999999999999999999999999999999999999 9999999999973
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-76 Score=797.06 Aligned_cols=599 Identities=22% Similarity=0.405 Sum_probs=497.1
Q ss_pred CCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcCCCCcH
Q 000615 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (1389)
Q Consensus 131 ~~~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGK 210 (1389)
++...+.+.|+|++++++...+.+. ....+.++++|+|||+.++||++++|+|||||||
T Consensus 861 ~~~~~~~~~~~~v~y~v~~~~~~~~---------------------~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGK 919 (1470)
T PLN03140 861 LPFTPLAMSFDDVNYFVDMPAEMKE---------------------QGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGK 919 (1470)
T ss_pred cCCCcceEEEEEEEEEEccCccccc---------------------cccCcCCceEeeCcEEEEECCeEEEEECCCCCCH
Confidence 4555678999999998764311000 0111234579999999999999999999999999
Q ss_pred HHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHH
Q 000615 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290 (1389)
Q Consensus 211 STLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~ 290 (1389)
||||++|+|+.++. ..+|+|.+||++.++...++.+|||+|+|.|++.+||+|||.|++.++.+.. ..+.+
T Consensus 920 TTLL~~LaG~~~~g-~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~-------~~~~~- 990 (1470)
T PLN03140 920 TTLMDVLAGRKTGG-YIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKE-------VSKEE- 990 (1470)
T ss_pred HHHHHHHcCCCCCC-cccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCC-------CCHHH-
Confidence 99999999997542 3589999999887644445679999999999999999999999876542210 00001
Q ss_pred hcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCC
Q 000615 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEIS 370 (1389)
Q Consensus 291 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEpt 370 (1389)
....++++++.+||++++|+.+|+...+||||||||||+||++|+.+|++|||||||
T Consensus 991 -----------------------~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPT 1047 (1470)
T PLN03140 991 -----------------------KMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPT 1047 (1470)
T ss_pred -----------------------HHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 112467899999999999999998877899999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC-CeEEEecCh----hHHHHHHHhc-CC-CCC
Q 000615 371 TGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE-GQIVYQGPR----DNVLEFFEHM-GF-KCP 443 (1389)
Q Consensus 371 sgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~-G~iv~~G~~----~~~~~~F~~l-G~-~~p 443 (1389)
+|||+.++..+++.|+++++. |+|+|+++|||+.++++.||++++|++ |+++|+|+. +++.+||+++ |+ +||
T Consensus 1048 sgLD~~~a~~v~~~L~~l~~~-g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p 1126 (1470)
T PLN03140 1048 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIK 1126 (1470)
T ss_pred CCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCcccccccHHHHHHhcCCCCCCC
Confidence 999999999999999999864 789999999999889999999999996 899999996 6899999997 66 499
Q ss_pred CCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcCCCCcccCCCCccccCcccCCHHHH
Q 000615 444 ERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWEL 523 (1389)
Q Consensus 444 ~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~ 523 (1389)
+..|||||+.++++..... ....++++.|+.++.+++..+.++................+|..++|.|
T Consensus 1127 ~~~NPAd~~l~v~~~~~~~------------~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q 1194 (1470)
T PLN03140 1127 EKYNPATWMLEVSSLAAEV------------KLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYFATQYSQSTWGQ 1194 (1470)
T ss_pred CCCCchhhhhhhhcccccc------------cccchHHHHHhccHHHHHHHHHHHHhccCCCCccccccCccccCCHHHH
Confidence 9999999999997643211 1124678888888776665443321110000111111235678899999
Q ss_pred HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHHHHHHHHHHHHHHHH-HHHHHHhhh
Q 000615 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFA-ENAMTVLRL 602 (1389)
Q Consensus 524 ~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~-~~~~~~~~~ 602 (1389)
++.|++|+++.+||++.....|+++.+++|+++|++||+.+.+..+.++.++..|++|+++++..++... .++....+|
T Consensus 1195 ~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR 1274 (1470)
T PLN03140 1195 FKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVER 1274 (1470)
T ss_pred HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998866555666677899999988887775554 345666799
Q ss_pred hhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000615 603 PIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRT 682 (1389)
Q Consensus 603 ~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~ 682 (1389)
++|+|||..++|++++|+++.++.++|+.++.+++|.+++|||+|+.++++.||.++++.++....+.+++.++++++++
T Consensus 1275 ~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~ 1354 (1470)
T PLN03140 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPN 1354 (1470)
T ss_pred HHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCccccCCCCCCCccccccccccccc
Q 000615 683 EVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIR 762 (1389)
Q Consensus 683 ~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~ 762 (1389)
..+|..+++++..++++|+||++++++||+||+|+||+||+.|++++++.|||.+....|.+++.. +..+..+.+++.+
T Consensus 1355 ~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~~~~~~~~~~~-~~~~~~~~~~~~~ 1433 (1470)
T PLN03140 1355 QQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGA-PDPTIKWYIQDHY 1433 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCCCCcccCCCCC-CCCcHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999998876655443210 1122233446777
Q ss_pred CccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000615 763 GFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNP 798 (1389)
Q Consensus 763 ~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~ 798 (1389)
||.. .|.|.++++++++.++|.+++++++++++.
T Consensus 1434 g~~~--~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140 1434 GYDP--DFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred CcCc--ccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence 8864 468999999999999999999999999875
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-75 Score=732.43 Aligned_cols=771 Identities=23% Similarity=0.338 Sum_probs=419.6
Q ss_pred CCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCC
Q 000615 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (1389)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 255 (1389)
+.+++.+||+|+|+.|++|+.++|+|||||||||++++|.++++|+ +|+|.++|+++.++.. +.++|.|+|+|.
T Consensus 361 PsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~---~G~V~idG~di~~~~~~~lr~~iglV~QePv 437 (1228)
T KOG0055|consen 361 PSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPT---SGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV 437 (1228)
T ss_pred CCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CceEEEcCccchhcchHHHHhhcCeeeechh
Confidence 3445678999999999999999999999999999999999999998 9999999999988764 478999999998
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
+|. .||+|||.|+. |+.+.++..++++.++.. +. +..|++.+||.|
T Consensus 438 lF~-~tI~eNI~~G~-------------------------~dat~~~i~~a~k~ana~-----~f---i~~lp~g~~T~v 483 (1228)
T KOG0055|consen 438 LFA-TTIRENIRYGK-------------------------PDATREEIEEAAKAANAH-----DF---ILKLPDGYDTLV 483 (1228)
T ss_pred hhc-ccHHHHHhcCC-------------------------CcccHHHHHHHHHHccHH-----HH---HHhhHHhhcccc
Confidence 885 69999999862 344445555665554432 33 445899999999
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
|+.. -.|||||||||+|||||+.+|+|||||||||+||+.++..+.+.|++..+ |+|+|+..|.. .+.+.+|+|+
T Consensus 484 ge~g-~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~--grTTivVaHRL--StIrnaD~I~ 558 (1228)
T KOG0055|consen 484 GERG-VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK--GRTTIVVAHRL--STIRNADKIA 558 (1228)
T ss_pred cCCC-CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc--CCeEEEEeeeh--hhhhccCEEE
Confidence 9832 22999999999999999999999999999999999999999999998875 66777776654 5667799999
Q ss_pred EEcCCeEEEecChhHHHHHHHhcCCCCCCCCChH-HH--HHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCc----
Q 000615 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVA-DF--LQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH---- 488 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~a-df--l~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---- 488 (1389)
+|++|+|+++|+++|+++. .+.. +. +|+....++.+ . .... ..++.....+.+.
T Consensus 559 v~~~G~IvE~G~h~ELi~~-----------~G~Y~~lv~~Q~~~~~~~~~-~---~~~~----~~~~~~~s~~~s~~~~~ 619 (1228)
T KOG0055|consen 559 VMEEGKIVEQGTHDELIAL-----------GGIYSSLVRLQELEKAAEDE-E---EEES----LKEERSRSLKSSSSSPS 619 (1228)
T ss_pred EEECCEEEEecCHHHHHhc-----------cchHHHHHHHHhhhhhhhcc-c---cccc----hhhhhhhcccccccccc
Confidence 9999999999999999862 0111 11 12221111100 0 0000 0000000000000
Q ss_pred cchh-HHhhh--cCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhh---hcc
Q 000615 489 MGQQ-IASDL--RVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTV---YFR 562 (1389)
Q Consensus 489 ~~~~-~~~~l--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tv---f~~ 562 (1389)
.... ..... ..+.++....+. .......+.|+.++.+. .+|..+.-.......+-....+.+++++.+ |+.
T Consensus 620 ~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~s~~~i~k~~~-pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~ 696 (1228)
T KOG0055|consen 620 LSRGSNRSNLLSVKPEGEDPEEPV--SEEDEKVSFWRIFKLNK-PEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYP 696 (1228)
T ss_pred ccCCcccccccccccccccccccc--ccccccccHHHHHHhcc-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhC
Confidence 0000 00000 000000000000 01112334444443322 133222111111112222223333333332 222
Q ss_pred ccCCCCCCCCcchhHHHHHHHHH----------HHHHHHHHHHHHHHhhhhhhhh--hhcCcccchhh--HHHH-HHHHH
Q 000615 563 TEMSVGDMNGGSRYFGALFFSLL----------NIMFNGFAENAMTVLRLPIFYK--QRDHLFYPSWA--FALP-IWLLR 627 (1389)
Q Consensus 563 ~~~~~~~~~~~~~~~g~lff~ll----------~~~~~~~~~~~~~~~~~~vf~k--~r~~~~y~~~a--~~la-~~l~~ 627 (1389)
.+. +.+......+..+|.++. ..+|.-..|....-.|...|.+ ..+..||.--- -.+. ....+
T Consensus 697 ~~~--~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~D 774 (1228)
T KOG0055|consen 697 PDD--DELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATD 774 (1228)
T ss_pred CCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcc
Confidence 211 111111222444443332 2233344444444444444433 11222221110 0111 11111
Q ss_pred hc---------HH----HHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH---------H
Q 000615 628 IP---------IS----ILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEV---------I 685 (1389)
Q Consensus 628 iP---------~~----~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~---------~ 685 (1389)
.| ++ .+.+++.+++.-|..|+....--...+.++. .......+++........ .
T Consensus 775 a~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~----~~~~~~~~~~~~~~~~~~~~~~ea~~iA 850 (1228)
T KOG0055|consen 775 ASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLI----LSGYLQKKFLKGFSKDDKKAYEEASKIA 850 (1228)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 11 11 1111122222222222211111000000000 000000111111100000 0
Q ss_pred HHHHHHHHHH--------HHHHHHhhccccCC--c-hhhHH-HHHHHc-HHHHHHHHHHHHHhcCCccccCCCCCCCccc
Q 000615 686 SNTLGTFILL--------IMMSLGGFVMAKDD--I-EPFLR-WGYYIS-PMMYGQTSLLVNEFLGGRWDAQNKDPSINQP 752 (1389)
Q Consensus 686 a~~~~~~~~~--------~~~l~~Gf~i~~~~--i-p~~~~-W~~~is-p~~y~~~al~~nef~~~~~~~~~~~~~~~~~ 752 (1389)
.-.+..+=.+ ++-++.--...+.. + ..+|. ..+-++ .+.|...++.. +.+...-. .
T Consensus 851 ~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~~~A~~f--~~G~~Li~---~------ 919 (1228)
T KOG0055|consen 851 IEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFFVYALSF--WYGARLIS---N------ 919 (1228)
T ss_pred HHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHh---c------
Confidence 0000000000 00000000000000 0 00110 011111 11222222211 11100000 0
Q ss_pred ccccccccccCccccCchhhHHHHHHHHHHHHHHHHH-HHHHHhcCCCCCCCceeeeccchhhhccCcccchhhhhhccc
Q 000615 753 TIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLF-IAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSS 831 (1389)
Q Consensus 753 ~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 831 (1389)
|. ...... +-.+ ..+.|.... .-+..|.. +..+...+....-...+..+
T Consensus 920 --g~-------~~~~~~-----~~vf--~~l~~ta~~~~~~~s~~P-----------d~~ka~~Aa~~iF~i~dr~~--- 969 (1228)
T KOG0055|consen 920 --GE-------MTFEDV-----FRVF--MALSFTAMALGQASSYAP-----------DISKAKIAAGSIFEILDRKP--- 969 (1228)
T ss_pred --CC-------cCHHHH-----HHHH--HHHHHHHHHHHHHHhhCc-----------HHHHHHHHHHHHHHHhcCCC---
Confidence 00 000000 0000 000010000 00111111 00011000000000000000
Q ss_pred ccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHh
Q 000615 832 SKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMD 911 (1389)
Q Consensus 832 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~ 911 (1389)
..+.....+...+.....++|+||++.+|..+ +.++|+|+|++|++|+.+||+|||||||||.+.
T Consensus 970 -----~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP----------~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~ 1034 (1228)
T KOG0055|consen 970 -----TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRP----------DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVIS 1034 (1228)
T ss_pred -----CCCCCCCCCCccccceeEEEEeeeEeeCCCCC----------CchhhcCCcEEecCCCEEEEECCCCCCHHHHHH
Confidence 00000012223344445799999999987644 467999999999999999999999999999999
Q ss_pred hhcCCCCCceEEEEEEEcCccCC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHH
Q 000615 912 VLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL 988 (1389)
Q Consensus 912 ~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~ 988 (1389)
+|-+..+ +..|.|.|||.++. ...+|+++|.|.|+|.++. -|++||+.|+. .+.+.++ +.++++.
T Consensus 1035 LLeRfYd--p~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~-----~~vs~~e----Ii~Aak~ 1102 (1228)
T KOG0055|consen 1035 LLERFYD--PDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS-----EEVSEEE----IIEAAKL 1102 (1228)
T ss_pred HHHHhcC--CCCCeEEECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC-----CCCCHHH----HHHHHHH
Confidence 9997654 45899999998864 4678899999999999975 59999999981 1133332 3444444
Q ss_pred cC-------CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Q 000615 989 VE-------LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVC 1061 (1389)
Q Consensus 989 l~-------L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~ 1061 (1389)
.+ |.+-.|+.+|..|. +||||||||++||||+++||+||||||+||+||+++.+.|+++|++.. .|+|.|+
T Consensus 1103 ANaH~FI~sLP~GyDT~vGerG~-QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~Iv 1180 (1228)
T KOG0055|consen 1103 ANAHNFISSLPQGYDTRVGERGV-QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIV 1180 (1228)
T ss_pred hhhHHHHhcCcCcccCccCcccC-cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEE
Confidence 33 44456888886654 699999999999999999999999999999999999999999999975 6999999
Q ss_pred EecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1062 TIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1062 ~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
++|++| ..+.+|.+.+++ +|++++.|..
T Consensus 1181 IAHRLS--TIqnaD~I~Vi~-~G~VvE~GtH 1208 (1228)
T KOG0055|consen 1181 IAHRLS--TIQNADVIAVLK-NGKVVEQGTH 1208 (1228)
T ss_pred Eecchh--hhhcCCEEEEEE-CCEEEecccH
Confidence 999976 678899999998 5899999984
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-71 Score=711.59 Aligned_cols=749 Identities=22% Similarity=0.297 Sum_probs=425.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
.+.|+|||+.|++|+++||+||.|||||+||.+|.|+++.. +|+|.++| .++||+|++|++. .|||
T Consensus 534 ~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~---sG~v~v~g----------siaYv~Q~pWI~n-gTvr 599 (1381)
T KOG0054|consen 534 EPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKL---SGSVAVNG----------SVAYVPQQPWIQN-GTVR 599 (1381)
T ss_pred cccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccc---cceEEEcC----------eEEEeccccHhhC-CcHH
Confidence 34899999999999999999999999999999999999875 99999998 4899999999995 6999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
|||.|+.... .+||+...+.|..++|..+ |+.+..|.||+ .+-.|
T Consensus 600 eNILFG~~~d--~~rY~~Vi~aC~L~~Dle~--------------------------------Lp~GD~TeIGE-rGinL 644 (1381)
T KOG0054|consen 600 ENILFGSPYD--EERYDKVIKACALKKDLEI--------------------------------LPFGDLTEIGE-RGINL 644 (1381)
T ss_pred HhhhcCcccc--HHHHHHHHHHccCHhHHhh--------------------------------cCCCCcceecC-CccCC
Confidence 9999986543 2455555555544443322 55677799997 33448
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHH-HHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~-~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
||||||||++|||++.+++|++||+|.|++|+++..+|.+ +++.+- .++|+|+++|| .+....+|.|++|++|+|
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L--~~KT~ILVTHq--l~~L~~ad~Iivl~~G~I 720 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL--RGKTVILVTHQ--LQFLPHADQIIVLKDGKI 720 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh--cCCEEEEEeCc--hhhhhhCCEEEEecCCeE
Confidence 9999999999999999999999999999999999999985 554433 46899998885 478899999999999999
Q ss_pred EEecChhHHHH---HHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 423 VYQGPRDNVLE---FFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 423 v~~G~~~~~~~---~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
+..|+++|+.+ +|+++ ...++ ..++.. ...+.+.......+ .+. +.. .......+.
T Consensus 721 ~~~Gty~el~~~~~~~~~l-~~~~~------------~~~~~~---~~~~~~~~~~~~~~-~~~-~~~---~~~~~~~~~ 779 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAEL-AHEEE------------SEQEEE---ASEKDLESGESSRE-SES-RSL---ESLSSEEEK 779 (1381)
T ss_pred ecccCHHHHHhcchhHHHH-hhccc------------hhhccc---cccccccccccccc-hhh-hhh---hhhcccccc
Confidence 99999999984 33332 00000 000000 00000000000000 000 000 000000000
Q ss_pred -CCCcc-cCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHH----HHHHHHhhhccccCCCCCC--
Q 000615 500 -PYDKS-QAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYI-FKTFQLTF----MSLICMTVYFRTEMSVGDM-- 570 (1389)
Q Consensus 500 -~~~~~-~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~-~~~~~~~i----~ali~~tvf~~~~~~~~~~-- 570 (1389)
..++. +......+.++.|...|..++.+++... ...... +-+.+... ++.-.+..||-........
T Consensus 780 ~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~-----g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~ 854 (1381)
T KOG0054|consen 780 SKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAG-----GFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTT 854 (1381)
T ss_pred cccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Confidence 00000 0001111223567788888888876411 111111 11111111 1111222233222111111
Q ss_pred CCcchhHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCc
Q 000615 571 NGGSRYFGAL-FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYD 649 (1389)
Q Consensus 571 ~~~~~~~g~l-ff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~ 649 (1389)
.+...|.+.. ++++...++..+..+.+.......-.+-++ .+-..+.+.|++||+++
T Consensus 855 ~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~---------~ml~~Ilrapm~FFdtT------------- 912 (1381)
T KOG0054|consen 855 VSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHD---------KLLNSILRAPMSFFDTT------------- 912 (1381)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhCcchhcCCC-------------
Confidence 1222222221 111111111111111111111111111111 12234677788887775
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH--H----hccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHH
Q 000615 650 PAASRFFKQFLAFFSIHNMSLPLYRLVA--A----VGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPM 723 (1389)
Q Consensus 650 ~~~~~ff~~~l~~~~~~~~~~~l~~~ia--a----~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~ 723 (1389)
..||.+++|..+........+...... + ++--.+++.....+++.++. +.++||....
T Consensus 913 -P~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli~~~p---------------l~v~~~~~~~ 976 (1381)
T KOG0054|consen 913 -PTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLIAIIP---------------LGVIYYFVQR 976 (1381)
T ss_pred -CccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHH---------------HHHHHHHHHH
Confidence 456677776665555544333221111 0 00000111111111111111 1223333333
Q ss_pred HHHHHHHHHHHhcCCccccCCCCCCCcc---cccccccccccCccccCc----------------------hhhHHHH--
Q 000615 724 MYGQTSLLVNEFLGGRWDAQNKDPSINQ---PTIGKVLLKIRGFSTESN----------------------WYWIGVG-- 776 (1389)
Q Consensus 724 ~y~~~al~~nef~~~~~~~~~~~~~~~~---~~~G~~~l~~~~~~~~~~----------------------~~w~~~~-- 776 (1389)
+|--.+.-+....+. ...|.+++ ...|... ++.|..+.. -.|.++.
T Consensus 977 ~Y~~tsReLkRLesi-----tRSPi~sh~~Etl~GlsT--IRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWla~Rle 1049 (1381)
T KOG0054|consen 977 YYLATSRELKRLESI-----TRSPIYSHFSETLQGLST--IRAFGKEERFIQENDELIDENSRAFFLSISANRWLAVRLE 1049 (1381)
T ss_pred HHHHHhHHHHHhhhc-----ccchHHHhHHHHhcCcce--eeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 443333332222111 11121111 0112111 111111110 1133322
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCc-----eeeeccchhhhc--cCcccchhhhhhccc---ccccc----------
Q 000615 777 ALTGYSFLFNFLFIAALAYLNPIGDSNS-----TVIEEDGEKQRA--SGHEAEGMQMAVRSS---SKTVG---------- 836 (1389)
Q Consensus 777 ~l~~~~~~f~~l~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~---------- 836 (1389)
.+-...+++..++.+ +........+.. +...-.+..... ...+.+..+.++++. ....+
T Consensus 1050 ~ig~~~v~~~al~~v-l~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~ 1128 (1381)
T KOG0054|consen 1050 LLGNLVVLIAALFAV-LLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESR 1128 (1381)
T ss_pred HHHHHHHHHHHHHHH-HccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCC
Confidence 221222221111111 111110000000 000000000000 000000000000000 00000
Q ss_pred cccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCC
Q 000615 837 AAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 837 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~ 916 (1389)
...+|+.. ..++|+|++..+.. +-..+|||||++|+|||++||+|++|||||||+++|.+.
T Consensus 1129 pp~~WP~~--------G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl 1189 (1381)
T KOG0054|consen 1129 PPPSWPSK--------GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRL 1189 (1381)
T ss_pred CCCCCCCC--------CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHh
Confidence 11222222 46899997655432 224699999999999999999999999999999999987
Q ss_pred CCCceEEEEEEEcCccCCh---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc
Q 000615 917 KTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993 (1389)
Q Consensus 917 ~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~ 993 (1389)
.. +.+|+|.|||.++.+ .++|++++.+||+|.++. +.+|.|.|+..+..++.++++||.++|++
T Consensus 1190 ~e--~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-----------GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~ 1256 (1381)
T KOG0054|consen 1190 VE--PAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-----------GTVRFNLDPFDEYSDDEIWEALERCQLKD 1256 (1381)
T ss_pred cC--ccCCeEEEcCeecccccHHHHHhcCeeeCCCCceec-----------CccccccCcccccCHHHHHHHHHHhChHH
Confidence 65 357999999998765 568899999999998754 44555557777888889999999999987
Q ss_pred ccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 000615 994 LNDSMVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1389)
Q Consensus 994 ~~~~~~g------~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1389)
......+ .++..++|.||||.+|+||||+++++||+|||+|+++|+++...|+++||+..+ +||||++.|+.+
T Consensus 1257 ~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1257 VVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLN 1335 (1381)
T ss_pred HHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccc
Confidence 6543322 135578999999999999999999999999999999999999999999999874 799999999975
Q ss_pred HHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1068 IDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1068 ~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
....+|+|+||++ |+++++|++.
T Consensus 1336 --TVmd~DrVlVld~-G~v~EfdsP~ 1358 (1381)
T KOG0054|consen 1336 --TVMDSDRVLVLDA-GRVVEFDSPA 1358 (1381)
T ss_pred --hhhhcCeEEEeeC-CeEeecCChH
Confidence 5678999999985 8999999874
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-69 Score=724.13 Aligned_cols=217 Identities=25% Similarity=0.393 Sum_probs=186.8
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..++ .+++.+|+|||+.|++||++||+||||||||||+++|+|...+ .+|+|.++|++.
T Consensus 1937 ~L~v~nLsK~Y~-----------~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p--tsG~I~i~G~~i 2003 (2272)
T TIGR01257 1937 ILRLNELTKVYS-----------GTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV--TSGDATVAGKSI 2003 (2272)
T ss_pred eEEEEEEEEEEC-----------CCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC--CccEEEECCEEC
Confidence 477888876542 1125699999999999999999999999999999999997653 479999999876
Q ss_pred Ch--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
.. ...++.+|||+|++.+++.+||+|++.+.+.++. .+.++.++.++++++.++|.+..|+.+ +.|||||
T Consensus 2004 ~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~-----~~LSGGq 2075 (2272)
T TIGR01257 2004 LTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLA-----GTYSGGN 2075 (2272)
T ss_pred cchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHH
Confidence 42 2345679999999999999999999998776653 233444567889999999999888875 4799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
||||+||+||+.+|+||||||||+|||+.+++.+++.|++++++|+|||+|||+++ ++...||++++|. +|++++.|+
T Consensus 2076 KqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~-~G~i~~~Gs 2153 (2272)
T TIGR01257 2076 KRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMV-KGAFQCLGT 2153 (2272)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEECC
Confidence 99999999999999999999999999999999999999999878999999999976 6778899999998 489999998
Q ss_pred CC
Q 000615 1092 LG 1093 (1389)
Q Consensus 1092 ~~ 1093 (1389)
..
T Consensus 2154 ~q 2155 (2272)
T TIGR01257 2154 IQ 2155 (2272)
T ss_pred HH
Confidence 63
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=704.91 Aligned_cols=533 Identities=26% Similarity=0.421 Sum_probs=457.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1389)
.++++|+||+|.++||.+|||||+|||||||||++|||+.... .++|+|.+||++.++...+|.+|||.|+|.|.+++|
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~T 880 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFARVSGYVEQQDIHSPELT 880 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhccccceeecccccCcccc
Confidence 5678999999999999999999999999999999999997653 579999999999987777899999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|||.|.|+|.++.+.+ +...|| ...+|+|++.++|++++|.+||+.. .
T Consensus 881 VrESL~fSA~LRlp~~-------v~~~ek------------------------~~yVe~Vi~lleL~~~~daiVG~~G-~ 928 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKE-------VSDEEK------------------------YEYVEEVIELLELKEYADALVGLPG-S 928 (1391)
T ss_pred hHHHHHHHHHHcCCCc-------CCHHHH------------------------HHHHHHHHHHhCchhhhhhhccCCC-C
Confidence 9999999998875432 222222 2358999999999999999999876 9
Q ss_pred CCChhHhhHHHHHHHHhcCC-cEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc-C
Q 000615 342 GISGGQKKRVTTGEMLVGTA-NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS-E 419 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p-~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~-~ 419 (1389)
|||.+||||++||..|+.+| .||||||||||||+.++..|++.+|++++ .|.||+|++|||+.++++.||++++|. .
T Consensus 929 GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrG 1007 (1391)
T KOG0065|consen 929 GLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRG 1007 (1391)
T ss_pred CCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcC
Confidence 99999999999999999999 99999999999999999999999999998 689999999999999999999999996 5
Q ss_pred CeEEEecChhH----HHHHHHhcC-CCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHH
Q 000615 420 GQIVYQGPRDN----VLEFFEHMG-FKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494 (1389)
Q Consensus 420 G~iv~~G~~~~----~~~~F~~lG-~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 494 (1389)
|+.||.||..+ +++||++.| .+||...|||||+.|+++...+.. ...++++.|++|..+++..
T Consensus 1008 GqtVY~G~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~------------~~~D~a~~w~~S~e~k~~~ 1075 (1391)
T KOG0065|consen 1008 GQTVYFGPLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEAS------------LSVDFAEIWKNSEEYKRNK 1075 (1391)
T ss_pred CeEEEecCcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccc------------cCccHHHHHhccHHHHHHH
Confidence 89999999754 567999987 899999999999999987643321 1237899999999888877
Q ss_pred hhhcCCCCcccC-CCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 000615 495 SDLRVPYDKSQA-HPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (1389)
Q Consensus 495 ~~l~~~~~~~~~-~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~ 573 (1389)
++++.-.+..+. ........+|..+.|.|++.|++|+++..||++.....|++..++.++++|+.||+.+. +.++.
T Consensus 1076 e~v~~l~~~~~~~~~~~~~~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~---~~q~l 1152 (1391)
T KOG0065|consen 1076 ELVKELSQPPPGFSTDLEFKTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGH---NVQGL 1152 (1391)
T ss_pred HHHHHHhcCCccCCcccccccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCC---cHHHH
Confidence 665432221111 22333456688999999999999999999999999999999999999999999999883 45666
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchH
Q 000615 574 SRYFGALFFSLLNIMFNGF-AENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1389)
Q Consensus 574 ~~~~g~lff~ll~~~~~~~-~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1389)
++.++++|.+++....+.. ........++-+++|||..+.|+..+|+++.++.++|+.++.+++|.++.|+++||...+
T Consensus 1153 qn~m~a~yma~v~~~~~~~~~~~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a 1232 (1391)
T KOG0065|consen 1153 QNAMGAAYMATVFSGPNNNQLQQPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTA 1232 (1391)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhH
Confidence 7788888887765543322 244455568889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHH
Q 000615 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1389)
Q Consensus 653 ~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1389)
.+++.+++..+........++.++.+++|+...|..+.+++..++.+|+||++|++.||.||+|+||+||+.|..++++.
T Consensus 1233 ~~~~~f~~~~~~f~lYf~~~Gmm~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~ 1312 (1391)
T KOG0065|consen 1233 SKFFWFLLFMFIFFLYFTTLGMMLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLIS 1312 (1391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHH
Confidence 99999988888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCccccCCCCCC----CcccccccccccccC
Q 000615 733 NEFLGGRWDAQNKDPS----INQPTIGKVLLKIRG 763 (1389)
Q Consensus 733 nef~~~~~~~~~~~~~----~~~~~~G~~~l~~~~ 763 (1389)
..+++..-.|...+.. .+..+.|+.+...++
T Consensus 1313 ~~~~d~~v~c~~~e~~~~~pp~g~tcge~m~~~~~ 1347 (1391)
T KOG0065|consen 1313 SQLGDVEVTCEDSEMNYFDPPSGQTCGEFMEDFFG 1347 (1391)
T ss_pred HHhCCCceeeecCCccccCCCCCcCHHHHHHHHhc
Confidence 9998765555432211 123455555544444
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-67 Score=716.17 Aligned_cols=212 Identities=24% Similarity=0.291 Sum_probs=178.4
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++.++. +...+|+|||++|+|||++||+|+||||||||+++|.|...+ .+|+|.|||.+
T Consensus 1236 g~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p--~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL--ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECCEe
Confidence 36999999987742 123599999999999999999999999999999999997653 47999999998
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
+. ...+|+.++||||++.++.. |++|||.+.. +. .++.++++++..++.+. .|+.+|..
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~----tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~ 1371 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EH----NDADLWESLERAHLKDVIRRNSLGLDAEVSEA 1371 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CC----CHHHHHHHHHHcCcHHHHHhCccccCccccCC
Confidence 64 35688899999999999875 9999996531 11 23447888888887654 34555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||+||||||+++|+||+||||||+||+.+.+.|++.|++.. +++|||+++|+++ ....||++++|++
T Consensus 1372 -G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~--tI~~~DrIlVLd~ 1447 (1622)
T PLN03130 1372 -GENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLN--TIIDCDRILVLDA 1447 (1622)
T ss_pred -CCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999985 4899999999975 5678999999985
Q ss_pred CcEEEEecCCC
Q 000615 1083 GGRVIYAGPLG 1093 (1389)
Q Consensus 1083 gG~~~~~g~~~ 1093 (1389)
|++++.|++.
T Consensus 1448 -G~IvE~Gt~~ 1457 (1622)
T PLN03130 1448 -GRVVEFDTPE 1457 (1622)
T ss_pred -CEEEEeCCHH
Confidence 8999999864
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-66 Score=710.84 Aligned_cols=211 Identities=22% Similarity=0.279 Sum_probs=177.8
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++.++. +.+.+|+|||++|+|||++||+|+||||||||+++|.|..++ .+|+|.|||.+
T Consensus 1233 g~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p--~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL--EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCceEEECCEE
Confidence 36899999987731 124599999999999999999999999999999999997653 47999999998
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 1002 (1389)
+. ...+|+.++||||++.+++. |++|||.+.. +.+ ++.++++++..++.+.. |+.+|..
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1368 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHN----DADLWEALERAHIKDVIDRNPFGLDAEVSEG 1368 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCC----HHHHHHHHHHcCCHHHHHhCcCCCCceecCC
Confidence 64 45678899999999999875 9999996531 122 33478888888886543 4455543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||++|||||+++|+||+||||||+||+++++.|++.|++.. +++|||+++|+++ ....||++++|++
T Consensus 1369 -G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~--ti~~~DrIlVL~~ 1444 (1495)
T PLN03232 1369 -GENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLN--TIIDCDKILVLSS 1444 (1495)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHH--HHHhCCEEEEEEC
Confidence 45799999999999999999999999999999999999999999999875 4899999999974 5678999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|++
T Consensus 1445 -G~ivE~Gt~ 1453 (1495)
T PLN03232 1445 -GQVLEYDSP 1453 (1495)
T ss_pred -CEEEEECCH
Confidence 899999985
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-65 Score=692.50 Aligned_cols=217 Identities=19% Similarity=0.306 Sum_probs=178.6
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc------------
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------------ 920 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g------------ 920 (1389)
..++|+||+|.++.. ++..+|+|+|++|+||+.+||+||||||||||+++|.|..++.
T Consensus 1164 g~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~ 1233 (1466)
T PTZ00265 1164 GKIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHT 1233 (1466)
T ss_pred ceEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccc
Confidence 369999999987521 1246999999999999999999999999999999999965431
Q ss_pred ----------------------------------------eEEEEEEEcCccCC---hhhhhheeeEeccCCCCCCCCCH
Q 000615 921 ----------------------------------------YIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 921 ----------------------------------------~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|.+||.++. ...+|+.+|||+|++.++ ..|+
T Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF-~gTI 1312 (1466)
T PTZ00265 1234 NDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLF-NMSI 1312 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccc-cccH
Confidence 14799999999863 467889999999999987 5799
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
+|||.|+. .+.+. +.++++++..++.++ .|+.+|.. ...||||||||++|||||+++|+||+|
T Consensus 1313 reNI~~g~-----~~at~----eeI~~A~k~A~l~~fI~~LP~GydT~VGe~-G~~LSGGQkQRIaIARALlr~p~ILLL 1382 (1466)
T PTZ00265 1313 YENIKFGK-----EDATR----EDVKRACKFAAIDEFIESLPNKYDTNVGPY-GKSLSGGQKQRIAIARALLREPKILLL 1382 (1466)
T ss_pred HHHHhcCC-----CCCCH----HHHHHHHHHcCCHHHHHhCccccCCccCCC-CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999862 12232 336777777776543 46777754 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhCeEEEEecC---cE-EEEecCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRG---GR-VIYAGPL 1092 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g---G~-~~~~g~~ 1092 (1389)
|||||+||+.+++.|++.|+++. .+++|+|+++|+++ ..+.+|++++|+++ |+ +++.|+.
T Consensus 1383 DEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRls--ti~~aD~Ivvl~~~~~~G~iv~e~Gth 1447 (1466)
T PTZ00265 1383 DEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIA--SIKRSDKIVVFNNPDRTGSFVQAHGTH 1447 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHH--HHHhCCEEEEEeCCCCCCCEEEEecCH
Confidence 99999999999999999999986 35899999999975 57889999999862 66 5578874
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=605.97 Aligned_cols=474 Identities=27% Similarity=0.353 Sum_probs=357.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCceeEEEECCeeCCCCCc-------CceEEEecCCC-
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1389)
..+++||||++.+||+++|+|.|||||||+.++|.|.+++. ...+|+|.++|.++..... .+.++||+|++
T Consensus 22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~ 101 (539)
T COG1123 22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPM 101 (539)
T ss_pred eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCch
Confidence 57999999999999999999999999999999999999876 4568999999997755432 26799999996
Q ss_pred -CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccc
Q 000615 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1389)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 333 (1389)
.+-|-+||.+.|.-..+.++... ..+....+.++|+..||++....
T Consensus 102 ~slnP~~tIg~Qi~E~~~~h~~~~---------------------------------~~ea~~~a~elL~~Vgl~~~~~~ 148 (539)
T COG1123 102 TSLNPVMTIGDQIREALRLHGKGS---------------------------------RAEARKRAVELLEQVGLPDPERR 148 (539)
T ss_pred hhcCchhhHHHHHHHHHHHhcccc---------------------------------HHHHHHHHHHHHHHcCCCChhhh
Confidence 45566899988865544332111 01122346778999999987655
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
+.+.+.|||||||||.||+||+.+|++|++||||++||+.++.+|.+.|+++.++.|.+++++. |...-+.++||+
T Consensus 149 ---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~IT-HDl~Vva~~aDr 224 (539)
T COG1123 149 ---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFIT-HDLGVVAELADR 224 (539)
T ss_pred ---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEc-CCHHHHHHhcCe
Confidence 4566779999999999999999999999999999999999999999999999988776666655 555678899999
Q ss_pred EEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhH
Q 000615 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQI 493 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 493 (1389)
|+||.+|++++.|+.+++..- |. .||.. .+
T Consensus 225 v~Vm~~G~iVE~G~~~~i~~~--------p~-------------------------hpYT~-----------------~L 254 (539)
T COG1123 225 VVVMYKGEIVETGPTEEILSN--------PQ-------------------------HPYTR-----------------GL 254 (539)
T ss_pred EEEEECCEEEEecCHHHHHhc--------cC-------------------------CcccH-----------------HH
Confidence 999999999999999998641 11 01100 00
Q ss_pred HhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc
Q 000615 494 ASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGG 573 (1389)
Q Consensus 494 ~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~ 573 (1389)
.+. .|.. .....
T Consensus 255 l~a--~p~~-----------------------------------------------------------------~~~~~- 266 (539)
T COG1123 255 LAA--VPRL-----------------------------------------------------------------GDEKI- 266 (539)
T ss_pred Hhh--CCCc-----------------------------------------------------------------ccccc-
Confidence 000 0000 00000
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHH
Q 000615 574 SRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAAS 653 (1389)
Q Consensus 574 ~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~ 653 (1389)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHH
Q 000615 654 RFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVN 733 (1389)
Q Consensus 654 ~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~n 733 (1389)
T Consensus 267 -------------------------------------------------------------------------------- 266 (539)
T COG1123 267 -------------------------------------------------------------------------------- 266 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchh
Q 000615 734 EFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEK 813 (1389)
Q Consensus 734 ef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 813 (1389)
.+. ....+
T Consensus 267 -----~~~-~~~~~------------------------------------------------------------------ 274 (539)
T COG1123 267 -----IRL-PRRGP------------------------------------------------------------------ 274 (539)
T ss_pred -----ccc-ccccc------------------------------------------------------------------
Confidence 000 00000
Q ss_pred hhccCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCC
Q 000615 814 QRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPG 893 (1389)
Q Consensus 814 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G 893 (1389)
.+ ...-++++|++-.+..+.... ....+...+++||||.+++|
T Consensus 275 ----------------------------------~~-~~~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~G 317 (539)
T COG1123 275 ----------------------------------LR-AEPLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREG 317 (539)
T ss_pred ----------------------------------cc-cCceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCC
Confidence 00 001233444433222211000 00012357999999999999
Q ss_pred eEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC--C---hhhhhheeeEeccCC--CCCCCCCHHHHHHHHHH
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK--N---QETFARVSGYCEQND--IHSPYVTVYESLLYSAW 966 (1389)
Q Consensus 894 e~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~--~---~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~ 966 (1389)
|++||+|+||||||||.++|+|...+ ..|.|.++|.+. + ....++.+-+++|++ .+.|.+||++.+.....
T Consensus 318 E~lglVGeSGsGKSTlar~i~gL~~P--~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~ 395 (539)
T COG1123 318 ETLGLVGESGSGKSTLARILAGLLPP--SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395 (539)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHh
Confidence 99999999999999999999998764 479999999762 1 223556778888876 47899999999977654
Q ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHH
Q 000615 967 LRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045 (1389)
Q Consensus 967 lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i 1045 (1389)
..... ...++++++.++++.++|.. +.++. +..||||||||++|||||+.+|++|++|||||.||+..+..|
T Consensus 396 ~~~~~--~~~~~~~rv~~ll~~VgL~~~~l~ry-----P~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~V 468 (539)
T COG1123 396 IHGGG--SGAERRARVAELLELVGLPPEFLDRY-----PHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQV 468 (539)
T ss_pred hhccc--chHHHHHHHHHHHHHcCCCHHHHhcC-----chhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHH
Confidence 44322 24566778999999999985 45555 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1046 MRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1046 ~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
.++|+++.++ |.|.|+||||.+ -+.+.||++++|. .|++++.||.
T Consensus 469 lnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~-~G~iVE~G~~ 514 (539)
T COG1123 469 LNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMY-DGRIVEEGPT 514 (539)
T ss_pred HHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEE-CCeEEEeCCH
Confidence 9999999765 999999999987 4778899999998 5899999974
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-64 Score=687.24 Aligned_cols=212 Identities=21% Similarity=0.218 Sum_probs=178.2
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++.++.. ...+|+|||++|+|||++||+|+||||||||+++|.|..+ +.+|+|.|||.+
T Consensus 1283 g~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~--~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE--SAEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc--CCCCeEEECCEE
Confidence 469999999887421 1359999999999999999999999999999999999765 347999999998
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 1002 (1389)
+. ...+|+.++||||++.+++. |++|||.... +.+ ++.++++++.+++.+.. |+.+|..
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~s----deei~~al~~a~l~~~I~~lp~GLdt~v~e~ 1418 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYS----DEEVWWALELAHLKTFVSALPDKLDHECAEG 1418 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCC----HHHHHHHHHHcCcHHHHhhCccCCCceecCC
Confidence 64 35678899999999999876 9999995211 122 33478889988886543 5555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||+||||||+++|+||+||||||+||+++...|++.|++.. +++|||+++|+++ ....+|+|++|+
T Consensus 1419 -G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~--ti~~~DrIlVld- 1493 (1522)
T TIGR00957 1419 -GENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLN--TIMDYTRVIVLD- 1493 (1522)
T ss_pred -CCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEE-
Confidence 35799999999999999999999999999999999999999999999875 4899999999964 677899999998
Q ss_pred CcEEEEecCCC
Q 000615 1083 GGRVIYAGPLG 1093 (1389)
Q Consensus 1083 gG~~~~~g~~~ 1093 (1389)
+|++++.|++.
T Consensus 1494 ~G~IvE~G~~~ 1504 (1522)
T TIGR00957 1494 KGEVAEFGAPS 1504 (1522)
T ss_pred CCEEEEECCHH
Confidence 58999999863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-64 Score=624.38 Aligned_cols=460 Identities=23% Similarity=0.331 Sum_probs=348.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|||+++++|++++|+||||||||||+++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 46999999999999999999999999999999999998861 128999999998865432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.|+......+. .... +....++.+++.+||++..++.+++
T Consensus 97 ~tv~e~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (506)
T PRK13549 97 LSVLENIFLGNEITPGGI-------MDYD------------------------AMYLRAQKLLAQLKLDINPATPVGN-- 143 (506)
T ss_pred CcHHHHhhhcccccccCC-------cCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 999999988643210000 0000 0012356688999999888888876
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.++||+|++|++
T Consensus 144 ---LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~-~~~~~~~~d~v~~l~~ 218 (506)
T PRK13549 144 ---LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHK-LNEVKAISDTICVIRD 218 (506)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCc-HHHHHHhcCEEEEEEC
Confidence 999999999999999999999999999999999999999999999975 46777776654 4578889999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 420 G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
|++++.|+.+++.. .+. .+.+
T Consensus 219 G~i~~~~~~~~~~~---------------~~~-----------------------------~~~~--------------- 239 (506)
T PRK13549 219 GRHIGTRPAAGMTE---------------DDI-----------------------------ITMM--------------- 239 (506)
T ss_pred CEEeeecccccCCH---------------HHH-----------------------------HHHh---------------
Confidence 99998886543210 000 0000
Q ss_pred CCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHH
Q 000615 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1389)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~ 579 (1389)
.... .
T Consensus 240 -------------------------------------------------------------~~~~-----~--------- 244 (506)
T PRK13549 240 -------------------------------------------------------------VGRE-----L--------- 244 (506)
T ss_pred -------------------------------------------------------------hCcC-----c---------
Confidence 0000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000615 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1389)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 659 (1389)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCc
Q 000615 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1389)
Q Consensus 660 l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1389)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccCc
Q 000615 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1389)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1389)
. . . + +
T Consensus 245 ------~----~------~-----~---------------------------------~--------------------- 249 (506)
T PRK13549 245 ------T----A------L-----Y---------------------------------P--------------------- 249 (506)
T ss_pred ------c----c------c-----c---------------------------------c---------------------
Confidence 0 0 0 0 0
Q ss_pred ccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEe
Q 000615 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1389)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 899 (1389)
.. . . . . ....++++|+++.++. .+++.+|+||||+|++||++||+
T Consensus 250 ------~~--~----~--~---~--------~~~~l~~~~l~~~~~~----------~~~~~vl~~vsl~i~~Ge~~~l~ 294 (506)
T PRK13549 250 ------RE--P----H--T---I--------GEVILEVRNLTAWDPV----------NPHIKRVDDVSFSLRRGEILGIA 294 (506)
T ss_pred ------cc--c----c--C---C--------CCceEEEecCcccccc----------ccccccccceeeEEcCCcEEEEe
Confidence 00 0 0 0 0 0012456666643310 01245999999999999999999
Q ss_pred ccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCC---CCCCCCCHHHHHHHHHHhhcC--
Q 000615 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLS-- 970 (1389)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~~~lr~~-- 970 (1389)
||||||||||+++|+|...+ +.+|+|.++|.+... ...++.++|++|++ .+++.+||.||+.+.......
T Consensus 295 G~NGsGKSTLlk~i~Gl~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (506)
T PRK13549 295 GLVGAGRTELVQCLFGAYPG-RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGG 373 (506)
T ss_pred CCCCCCHHHHHHHHhCCCCC-CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccC
Confidence 99999999999999997541 137999999976532 12345689999985 467889999999875321111
Q ss_pred CCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHH
Q 000615 971 SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTV 1049 (1389)
Q Consensus 971 ~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l 1049 (1389)
.....++..+.++++++.+++. +..+..+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|
T Consensus 374 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l 448 (506)
T PRK13549 374 SRIDDAAELKTILESIQRLKVKTASPELAI-----ARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLI 448 (506)
T ss_pred cccChHHHHHHHHHHHHhcCccCCCccccc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHH
Confidence 0012233445689999999996 4666664 479999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1050 RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1050 ~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
++++++|+|||++||+++ ++.+.||++++|.+ |+++..|+..+
T Consensus 449 ~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 491 (506)
T PRK13549 449 NQLVQQGVAIIVISSELP-EVLGLSDRVLVMHE-GKLKGDLINHN 491 (506)
T ss_pred HHHHHCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEecccc
Confidence 999888999999999986 57788999999985 89988887654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-64 Score=621.93 Aligned_cols=450 Identities=22% Similarity=0.342 Sum_probs=345.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK10762 17 VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRD---AGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQ 93 (501)
T ss_pred eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEEcchhccCC
Confidence 46999999999999999999999999999999999999887 9999999998754321 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.|+......... .... +....++.+++.+||++..|..+++
T Consensus 94 ~tv~e~l~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 141 (501)
T PRK10762 94 LTIAENIFLGREFVNRFGR------IDWK------------------------KMYAEADKLLARLNLRFSSDKLVGE-- 141 (501)
T ss_pred CcHHHHhhhccccccccCc------cCHH------------------------HHHHHHHHHHHHcCCCCCccCchhh--
Confidence 9999999886432100000 0000 0012356688999999888888887
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|+ ..++.++||+|++|++
T Consensus 142 ---LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd-~~~~~~~~d~i~~l~~ 216 (501)
T PRK10762 142 ---LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHR-LKEIFEICDDVTVFRD 216 (501)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999875 36677776654 4588899999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 420 G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
|+++..|+.+++.. .+ ..+.+
T Consensus 217 G~i~~~~~~~~~~~---------------~~-----------------------------~~~~~--------------- 237 (501)
T PRK10762 217 GQFIAEREVADLTE---------------DS-----------------------------LIEMM--------------- 237 (501)
T ss_pred CEEEEecCcCcCCH---------------HH-----------------------------HHHHh---------------
Confidence 99998776543210 00 00000
Q ss_pred CCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHH
Q 000615 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1389)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~ 579 (1389)
+ .
T Consensus 238 -------------------------------------------------------------~--~--------------- 239 (501)
T PRK10762 238 -------------------------------------------------------------V--G--------------- 239 (501)
T ss_pred -------------------------------------------------------------c--C---------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000615 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1389)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 659 (1389)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T PRK10762 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCc
Q 000615 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1389)
Q Consensus 660 l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1389)
.+
T Consensus 240 ------------------------------------------------------------------------------~~ 241 (501)
T PRK10762 240 ------------------------------------------------------------------------------RK 241 (501)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 00
Q ss_pred cccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccCc
Q 000615 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1389)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1389)
.....+.
T Consensus 242 ~~~~~~~------------------------------------------------------------------------- 248 (501)
T PRK10762 242 LEDQYPR------------------------------------------------------------------------- 248 (501)
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred ccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEe
Q 000615 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1389)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 899 (1389)
. . . + + .+..++++|++. .+|+|+||+|++||++||+
T Consensus 249 ------~--------~--~---~------~-~~~~l~~~~l~~------------------~~l~~vsl~i~~Ge~~~li 284 (501)
T PRK10762 249 ------L--------D--K---A------P-GEVRLKVDNLSG------------------PGVNDVSFTLRKGEILGVS 284 (501)
T ss_pred ------c--------c--c---C------C-CCcEEEEeCccc------------------CCcccceEEEcCCcEEEEe
Confidence 0 0 0 0 0 001245666541 2699999999999999999
Q ss_pred ccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCC---CCCCCCCHHHHHHHHHHhhc-C-
Q 000615 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRL-S- 970 (1389)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~~~lr~-~- 970 (1389)
||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++ .+++.+||.|++.+...... .
T Consensus 285 G~NGsGKSTLl~~l~G~~~p--~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 362 (501)
T PRK10762 285 GLMGAGRTELMKVLYGALPR--TSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRA 362 (501)
T ss_pred cCCCCCHHHHHHHHhCCCCC--CceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhccc
Confidence 99999999999999997653 47999999976532 12345699999996 57788999999987532110 0
Q ss_pred -CCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHH
Q 000615 971 -SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1389)
Q Consensus 971 -~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1048 (1389)
.....++.++.++++++.++|. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.
T Consensus 363 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 437 (501)
T PRK10762 363 GGSLKHADEQQAVSDFIRLFNIKTPSMEQAI-----GLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQL 437 (501)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCCCCccCch-----hhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0012233345688999999995 5666664 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
|++++++|+|||++||+++ ++.+.||++++|.+ |+++..|+...
T Consensus 438 l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~~~~~~ 481 (501)
T PRK10762 438 INQFKAEGLSIILVSSEMP-EVLGMSDRILVMHE-GRISGEFTREQ 481 (501)
T ss_pred HHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecccc
Confidence 9999878999999999986 57788999999985 88998887653
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-64 Score=624.93 Aligned_cols=458 Identities=22% Similarity=0.299 Sum_probs=346.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 18 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 94 (510)
T PRK09700 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPT---KGTITINNINYNKLDHKLAAQLGIGIIYQELSVIDE 94 (510)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCC---ccEEEECCEECCCCCHHHHHHCCeEEEeecccccCC
Confidence 46999999999999999999999999999999999999887 8999999998865432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++...... .+.. ...... +....++.+++.+||++..|+.+++
T Consensus 95 ~tv~e~l~~~~~~~~~--~~~~-~~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~-- 145 (510)
T PRK09700 95 LTVLENLYIGRHLTKK--VCGV-NIIDWR------------------------EMRVRAAMMLLRVGLKVDLDEKVAN-- 145 (510)
T ss_pred CcHHHHhhhccccccc--cccc-cccCHH------------------------HHHHHHHHHHHHcCCCCCcccchhh--
Confidence 9999999875321000 0000 000000 0112356788999999888988877
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|+|++.| ...++.+++|+|++|++
T Consensus 146 ---LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~-g~tiiivsH-d~~~~~~~~d~v~~l~~ 220 (510)
T PRK09700 146 ---LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKE-GTAIVYISH-KLAEIRRICDRYTVMKD 220 (510)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEeC-CHHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999764 677776655 45688899999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 420 G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
|++++.|+++++.. .+.. +..
T Consensus 221 G~i~~~g~~~~~~~---------------~~~~-----------------------------~~~--------------- 241 (510)
T PRK09700 221 GSSVCSGMVSDVSN---------------DDIV-----------------------------RLM--------------- 241 (510)
T ss_pred CEEeeecchhhCCH---------------HHHH-----------------------------HHh---------------
Confidence 99999887765310 0000 000
Q ss_pred CCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHH
Q 000615 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1389)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~ 579 (1389)
.... ..
T Consensus 242 -------------------------------------------------------------~~~~-----~~-------- 247 (510)
T PRK09700 242 -------------------------------------------------------------VGRE-----LQ-------- 247 (510)
T ss_pred -------------------------------------------------------------cCCC-----cc--------
Confidence 0000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000615 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1389)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 659 (1389)
T Consensus 248 -------------------------------------------------------------------------------- 247 (510)
T PRK09700 248 -------------------------------------------------------------------------------- 247 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCc
Q 000615 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1389)
Q Consensus 660 l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1389)
..
T Consensus 248 ------------------------------------------------------------------------------~~ 249 (510)
T PRK09700 248 ------------------------------------------------------------------------------NR 249 (510)
T ss_pred ------------------------------------------------------------------------------cc
Confidence 00
Q ss_pred cccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccCc
Q 000615 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1389)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1389)
. .. . .
T Consensus 250 ~----~~----~-------------------------------------------------------------~------ 254 (510)
T PRK09700 250 F----NA----M-------------------------------------------------------------K------ 254 (510)
T ss_pred c----cc----c-------------------------------------------------------------c------
Confidence 0 00 0 0
Q ss_pred ccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEe
Q 000615 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1389)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 899 (1389)
+.. . .. . .+..++++|++... ..+|+|||++|++||++||+
T Consensus 255 ---------~~~---~-~~---~--------~~~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~ 295 (510)
T PRK09700 255 ---------ENV---S-NL---A--------HETVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFA 295 (510)
T ss_pred ---------ccc---c-cC---C--------CCcEEEEeCccccC---------------CCcccceeEEEcCCcEEEEE
Confidence 000 0 00 0 01135677766321 13899999999999999999
Q ss_pred ccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccC---CCCCCCCCHHHHHHHHHHhh---c
Q 000615 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQN---DIHSPYVTVYESLLYSAWLR---L 969 (1389)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~~~~~lTv~E~l~f~~~lr---~ 969 (1389)
||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|+ ..+++.+||.|++.+....+ .
T Consensus 296 G~NGsGKSTLlk~i~Gl~~p--~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 373 (510)
T PRK09700 296 GLVGSGRTELMNCLFGVDKR--AGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGY 373 (510)
T ss_pred CCCCCCHHHHHHHHhCCCcC--CCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccc
Confidence 99999999999999997653 47999999976532 1234578999998 45788999999998753211 0
Q ss_pred CC--C-CcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHH
Q 000615 970 SS--D-VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045 (1389)
Q Consensus 970 ~~--~-~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i 1045 (1389)
.. . .......+.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+
T Consensus 374 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 448 (510)
T PRK09700 374 KGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI-----TELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEI 448 (510)
T ss_pred cccccccChHHHHHHHHHHHHhcCCCCCCccCcc-----ccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHH
Confidence 00 0 11222335678999999996 6677764 47999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1046 ~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
++.|++++++|.|||++||++. ++.+.||++++|.+ |+++..++.
T Consensus 449 ~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 493 (510)
T PRK09700 449 YKVMRQLADDGKVILMVSSELP-EIITVCDRIAVFCE-GRLTQILTN 493 (510)
T ss_pred HHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEEC-CEEEEEecC
Confidence 9999999878999999999986 57788999999985 788887764
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-63 Score=630.70 Aligned_cols=488 Identities=20% Similarity=0.236 Sum_probs=351.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCC----------CC------c-Cce
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----------FV------P-QRT 246 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----------~~------~-~~~ 246 (1389)
.++|+|||+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|..+.. .. . ++.
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 105 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA---GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGAD 105 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---CeEEEECCEEeccccccccccccCCHHHHHHHhCCC
Confidence 46999999999999999999999999999999999999887 8999999975421 11 1 246
Q ss_pred EEEecCCC--CCCCCCCHHHHHHHhhhcc-CCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHH
Q 000615 247 CAYISQHD--LHHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLK 323 (1389)
Q Consensus 247 ~~yv~Q~d--~~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~ 323 (1389)
++||+|++ .+++.+||+||+.++.+.. +.. +. +....++++++
T Consensus 106 ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~ 151 (623)
T PRK10261 106 MAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS----------RE------------------------EAMVEAKRMLD 151 (623)
T ss_pred EEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHH
Confidence 99999997 6788899999999875421 110 00 01123567889
Q ss_pred HhCCcc---cccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEE
Q 000615 324 ILGLDI---CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL 400 (1389)
Q Consensus 324 ~lgL~~---~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~ 400 (1389)
.+||++ ..+..+.+ |||||||||+||+||+.+|++|||||||+|||+.++.++.+.|+++++..+.|+|++.
T Consensus 152 ~~gL~~~~~~~~~~~~~-----LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~it 226 (623)
T PRK10261 152 QVRIPEAQTILSRYPHQ-----LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFIT 226 (623)
T ss_pred HCCCCChhhHHhCCCcc-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 999964 46777766 9999999999999999999999999999999999999999999999865567766655
Q ss_pred ecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHH
Q 000615 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDF 480 (1389)
Q Consensus 401 ~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~ 480 (1389)
|...++.++||+|++|++|++++.|+++++.+ .|.+.-..+++..+
T Consensus 227 -Hdl~~~~~~adri~vl~~G~i~~~g~~~~~~~--------~~~~~~~~~l~~~~------------------------- 272 (623)
T PRK10261 227 -HDMGVVAEIADRVLVMYQGEAVETGSVEQIFH--------APQHPYTRALLAAV------------------------- 272 (623)
T ss_pred -CCHHHHHHhCCEEEEeeCCeecccCCHHHhhc--------CCCChhhhhhhhcc-------------------------
Confidence 55568889999999999999999999876531 01000000000000
Q ss_pred HHHHHhCccchhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhh
Q 000615 481 VEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVY 560 (1389)
Q Consensus 481 ~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf 560 (1389)
+.
T Consensus 273 -------------------~~----------------------------------------------------------- 274 (623)
T PRK10261 273 -------------------PQ----------------------------------------------------------- 274 (623)
T ss_pred -------------------Cc-----------------------------------------------------------
Confidence 00
Q ss_pred ccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHH
Q 000615 561 FRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVA 640 (1389)
Q Consensus 561 ~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~ 640 (1389)
. ....+. .
T Consensus 275 --~----~~~~~~------------------------------------~------------------------------ 282 (623)
T PRK10261 275 --L----GAMKGL------------------------------------D------------------------------ 282 (623)
T ss_pred --c----cccccc------------------------------------c------------------------------
Confidence 0 000000 0
Q ss_pred HHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHH
Q 000615 641 LTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYI 720 (1389)
Q Consensus 641 i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~i 720 (1389)
.+. ..+.
T Consensus 283 ----------------------------------------------------------------~~~-~~~~-------- 289 (623)
T PRK10261 283 ----------------------------------------------------------------YPR-RFPL-------- 289 (623)
T ss_pred ----------------------------------------------------------------CCc-cccc--------
Confidence 000 0000
Q ss_pred cHHHHHHHHHHHHHhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 000615 721 SPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIG 800 (1389)
Q Consensus 721 sp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~ 800 (1389)
-....+. .
T Consensus 290 -------------------~~~~~~~----~------------------------------------------------- 297 (623)
T PRK10261 290 -------------------ISLEHPA----K------------------------------------------------- 297 (623)
T ss_pred -------------------ccccccc----c-------------------------------------------------
Confidence 0000000 0
Q ss_pred CCCceeeeccchhhhccCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccc
Q 000615 801 DSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRL 880 (1389)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1389)
.. . .. .. . .... ....++++|+++.++..... .......+
T Consensus 298 ------------~~-~----~~-----------~~--~--~~~~------~~~~L~~~~l~~~y~~~~~~--~~~~~~~~ 337 (623)
T PRK10261 298 ------------QE-P----PI-----------EQ--D--TVVD------GEPILQVRNLVTRFPLRSGL--LNRVTREV 337 (623)
T ss_pred ------------cC-c----cc-----------cc--c--cccC------CCceEEEeeeEEEEcCCCcc--ccccCCce
Confidence 00 0 00 00 0 0000 01136788887665311000 00000124
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCC--CCC
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQND--IHS 952 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~ 952 (1389)
.+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.++.. ..+++.++|++|++ .++
T Consensus 338 ~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~ 415 (623)
T PRK10261 338 HAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE--SQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLD 415 (623)
T ss_pred EEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcC
Confidence 69999999999999999999999999999999999765 347999999986532 12356799999997 578
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
+.+||.|++.+....+. ....++..+++.++++.++|. +..+.. +..|||||||||+|||||+.+|+|||||
T Consensus 416 ~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~~~-----~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 416 PRQTVGDSIMEPLRVHG--LLPGKAAAARVAWLLERVGLLPEHAWRY-----PHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CCCCHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCCHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 89999999987643321 112334456789999999995 456665 4579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
|||+|||+.++..++++|++++++ |.|||++||+++ .+.+.||++++|.+ |++++.|+..
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~-G~iv~~g~~~ 549 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYL-GQIVEIGPRR 549 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999765 899999999986 57788999999985 8999998753
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-63 Score=616.83 Aligned_cols=453 Identities=21% Similarity=0.282 Sum_probs=343.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 24 ~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (510)
T PRK15439 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPD---SGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPN 100 (510)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEeccCccCCC
Confidence 45999999999999999999999999999999999999887 8999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.|..... . + ....++.+++.+||++..++.+++
T Consensus 101 ~tv~e~l~~~~~~~-------------~-~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (510)
T PRK15439 101 LSVKENILFGLPKR-------------Q-A------------------------SMQKMKQLLAALGCQLDLDSSAGS-- 140 (510)
T ss_pred CcHHHHhhcccccc-------------h-H------------------------HHHHHHHHHHHcCCCccccCChhh--
Confidence 99999998753100 0 0 011346678899999888888877
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|+|++.|+ ..++.++||+|++|++
T Consensus 141 ---LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tiiivtHd-~~~~~~~~d~i~~l~~ 215 (510)
T PRK15439 141 ---LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ-GVGIVFISHK-LPEIRQLADRISVMRD 215 (510)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998763 6777766554 4578899999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 420 G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
|++++.|+++++... +.. +.+.. .
T Consensus 216 G~i~~~g~~~~~~~~---------------~~~-----------------------------~~~~~------------~ 239 (510)
T PRK15439 216 GTIALSGKTADLSTD---------------DII-----------------------------QAITP------------A 239 (510)
T ss_pred CEEEEecChHHcCHH---------------HHH-----------------------------HHHhC------------c
Confidence 999999988764210 000 00000 0
Q ss_pred CCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHH
Q 000615 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1389)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~ 579 (1389)
. .. ......
T Consensus 240 ~-----~~------------------------------------------------------------~~~~~~------ 248 (510)
T PRK15439 240 A-----RE------------------------------------------------------------KSLSAS------ 248 (510)
T ss_pred c-----cc------------------------------------------------------------cccccc------
Confidence 0 00 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000615 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1389)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 659 (1389)
T Consensus 249 -------------------------------------------------------------------------------- 248 (510)
T PRK15439 249 -------------------------------------------------------------------------------- 248 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCc
Q 000615 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1389)
Q Consensus 660 l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1389)
. .
T Consensus 249 ---------------------------------------------------~---------------------------~ 250 (510)
T PRK15439 249 ---------------------------------------------------Q---------------------------K 250 (510)
T ss_pred ---------------------------------------------------c---------------------------c
Confidence 0 0
Q ss_pred cccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccCc
Q 000615 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1389)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1389)
.. . .+
T Consensus 251 ~~----~----------------~~------------------------------------------------------- 255 (510)
T PRK15439 251 LW----L----------------EL------------------------------------------------------- 255 (510)
T ss_pred cc----c----------------cc-------------------------------------------------------
Confidence 00 0 00
Q ss_pred ccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEe
Q 000615 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1389)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 899 (1389)
+.. .. . ... .+..++++|++. .+|+|||++|++|+++||+
T Consensus 256 ---------~~~---~~-~---~~~------~~~~l~~~~l~~------------------~~l~~isl~i~~Ge~~~l~ 295 (510)
T PRK15439 256 ---------PGN---RR-Q---QAA------GAPVLTVEDLTG------------------EGFRNISLEVRAGEILGLA 295 (510)
T ss_pred ---------ccc---cc-c---cCC------CCceEEEeCCCC------------------CCccceeEEEcCCcEEEEE
Confidence 000 00 0 000 011256666651 1599999999999999999
Q ss_pred ccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh----hhhheeeEeccCC---CCCCCCCHHHHHHHHHHhhcCCC
Q 000615 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLSSD 972 (1389)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~~~lr~~~~ 972 (1389)
||||||||||+++|+|...+ .+|+|.++|.++... ..++.++|++|++ .+++.+|+.|++......+....
T Consensus 296 G~NGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~ 373 (510)
T PRK15439 296 GVVGAGRTELAETLYGLRPA--RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW 373 (510)
T ss_pred CCCCCCHHHHHHHHcCCCCC--CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccc
Confidence 99999999999999997553 479999999865321 1245689999984 47788999999864211111100
Q ss_pred CcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHH
Q 000615 973 VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051 (1389)
Q Consensus 973 ~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~ 1051 (1389)
......++.++++++.++|. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|++
T Consensus 374 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~ 448 (510)
T PRK15439 374 IKPARENAVLERYRRALNIKFNHAEQAA-----RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS 448 (510)
T ss_pred cChHHHHHHHHHHHHHcCCCCCCccCcc-----ccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence 11122335688999999997 6667664 47999999999999999999999999999999999999999999999
Q ss_pred HHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1052 ~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
++++|.|||++||+++ ++.+.||++++|. +|++++.|..+
T Consensus 449 l~~~g~tiIivsHd~~-~i~~~~d~i~~l~-~G~i~~~~~~~ 488 (510)
T PRK15439 449 IAAQNVAVLFISSDLE-EIEQMADRVLVMH-QGEISGALTGA 488 (510)
T ss_pred HHhCCCEEEEECCCHH-HHHHhCCEEEEEE-CCEEEEEEccc
Confidence 9888999999999986 5778899999998 58999888654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-62 Score=669.24 Aligned_cols=211 Identities=23% Similarity=0.262 Sum_probs=178.0
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++.++. +...+|+||||+|+|||++||+|+||||||||+++|.|... +.+|+|.+||.+
T Consensus 1307 G~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~--p~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE--VCGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEE
Confidence 46999999987742 12359999999999999999999999999999999999765 347999999998
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
+. ...+|+.++||||++.+++. |++|||... .+.+ ++.++++++.+++.+. .|+.+|..
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~s----deeI~~Al~~a~l~~~I~~lp~Gldt~vge~ 1442 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEAS----SAEVWAALELVGLRERVASESEGIDSRVLEG 1442 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCC----HHHHHHHHHHCCChHHHhhCcccccccccCC
Confidence 64 46688999999999999875 999999531 1222 3458899999988764 35556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhC-CCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1003 GVSGLSTEQRKRLTIAVELVAN-PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~-p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
..+||||||||++|||||+++ |+||+||||||+||+++.+.|++.|++.. +++|||+|+|++ +....||+|++|+
T Consensus 1443 -G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl--~ti~~~DrIlVLd 1518 (1560)
T PTZ00243 1443 -GSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRL--HTVAQYDKIIVMD 1518 (1560)
T ss_pred -cCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 357999999999999999996 89999999999999999999999999875 479999999996 4678899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |++++.|+.
T Consensus 1519 ~-G~VvE~Gt~ 1528 (1560)
T PTZ00243 1519 H-GAVAEMGSP 1528 (1560)
T ss_pred C-CEEEEECCH
Confidence 4 899999985
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-63 Score=619.75 Aligned_cols=464 Identities=21% Similarity=0.282 Sum_probs=344.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCCCc-------CceEEEecCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1389)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|. ...+|+|.++|+++..... ++.++|++|++
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 46999999999999999999999999999999999999862 1138999999998765321 24699999997
Q ss_pred C--CCCCCCHHHHHHHhhhcc-CCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc--
Q 000615 255 L--HHGEMTVRETLDFSGRCL-GVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-- 329 (1389)
Q Consensus 255 ~--~~~~lTV~E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-- 329 (1389)
. +.+.+||+|++.+..... +.. +. +....++.+++.+||++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~ 147 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMR----------RE------------------------AARGEILNCLDRVGIRQAA 147 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHCCCCChH
Confidence 4 567789999987642211 100 00 01123567889999975
Q ss_pred -cccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHH
Q 000615 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1389)
Q Consensus 330 -~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~ 408 (1389)
..|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.|+ ..++.
T Consensus 148 ~~~~~~~~~-----LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~ 221 (529)
T PRK15134 148 KRLTDYPHQ-----LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHN-LSIVR 221 (529)
T ss_pred HHHhhCCcc-----cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCc-HHHHH
Confidence 35777776 999999999999999999999999999999999999999999999976556777777655 45778
Q ss_pred hhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCc
Q 000615 409 DLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFH 488 (1389)
Q Consensus 409 ~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 488 (1389)
++||+|++|++|++++.|+++++... |.. .+ .
T Consensus 222 ~~~dri~~l~~G~i~~~g~~~~~~~~--------~~~----~~-----------------------------~------- 253 (529)
T PRK15134 222 KLADRVAVMQNGRCVEQNRAATLFSA--------PTH----PY-----------------------------T------- 253 (529)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHhhC--------CCC----HH-----------------------------H-------
Confidence 89999999999999999988765310 000 00 0
Q ss_pred cchhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCC
Q 000615 489 MGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVG 568 (1389)
Q Consensus 489 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~ 568 (1389)
+.+ +...
T Consensus 254 -----------------------------------------~~~----------------------------~~~~---- 260 (529)
T PRK15134 254 -----------------------------------------QKL----------------------------LNSE---- 260 (529)
T ss_pred -----------------------------------------HHH----------------------------HHhC----
Confidence 000 0000
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCC
Q 000615 569 DMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGY 648 (1389)
Q Consensus 569 ~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~ 648 (1389)
T Consensus 261 -------------------------------------------------------------------------------- 260 (529)
T PRK15134 261 -------------------------------------------------------------------------------- 260 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHH
Q 000615 649 DPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQT 728 (1389)
Q Consensus 649 ~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~ 728 (1389)
+
T Consensus 261 --------------------------------------------------------------~----------------- 261 (529)
T PRK15134 261 --------------------------------------------------------------P----------------- 261 (529)
T ss_pred --------------------------------------------------------------c-----------------
Confidence 0
Q ss_pred HHHHHHhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeee
Q 000615 729 SLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIE 808 (1389)
Q Consensus 729 al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~ 808 (1389)
. ..+. .
T Consensus 262 ----------~---~~~~----~--------------------------------------------------------- 267 (529)
T PRK15134 262 ----------S---GDPV----P--------------------------------------------------------- 267 (529)
T ss_pred ----------c---cccc----c---------------------------------------------------------
Confidence 0 0000 0
Q ss_pred ccchhhhccCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeeccee
Q 000615 809 EDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSG 888 (1389)
Q Consensus 809 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~ 888 (1389)
. ...+ +..++++|+++.++...+. .+...+.+.+|+|||+
T Consensus 268 --------------------------~------~~~~------~~~l~~~~l~~~~~~~~~~--~~~~~~~~~il~~isl 307 (529)
T PRK15134 268 --------------------------L------PEPA------SPLLDVEQLQVAFPIRKGI--LKRTVDHNVVVKNISF 307 (529)
T ss_pred --------------------------c------CCCC------CCcccccCcEEEeecCccc--cccccccceeeeccee
Confidence 0 0000 0013455555443210000 0000012469999999
Q ss_pred EEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---h---hhhheeeEeccCC--CCCCCCCHHHH
Q 000615 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQND--IHSPYVTVYES 960 (1389)
Q Consensus 889 ~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~~--~~~~~lTv~E~ 960 (1389)
+|++||++||+||||||||||+++|+|... .+|+|.++|.++.. . .+++.+||++|++ .+++.+||.|+
T Consensus 308 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~ 384 (529)
T PRK15134 308 TLRPGETLGLVGESGSGKSTTGLALLRLIN---SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQI 384 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHH
Confidence 999999999999999999999999999753 37999999976532 1 1345699999997 47788999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 961 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
+.+....+.. .....+.++.++++++.++|. +..+.. +..|||||||||+||++|+.+|++|||||||+|||+
T Consensus 385 l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 385 IEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRY-----PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred HHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcC-----CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 9886533211 122334456688999999996 456665 457999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1040 RAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
.++..+++.|++++++ |+|||++||+++ ++.+.||++++|.+ |+++..|+.
T Consensus 459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 510 (529)
T PRK15134 459 TVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQ-GEVVEQGDC 510 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEEEcCH
Confidence 9999999999999865 899999999976 57778999999985 899988874
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-63 Score=618.32 Aligned_cols=445 Identities=23% Similarity=0.311 Sum_probs=340.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCceeEEEECC-----------------------eeC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCG-----------------------HEL 238 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G-----------------------~~~ 238 (1389)
+++|+|+|+++.+|++++|+|||||||||||++|+|.+ +|+ +|+|.++| .++
T Consensus 13 ~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~---~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~ 89 (520)
T TIGR03269 13 KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPT---SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTL 89 (520)
T ss_pred eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCC---ceEEEEeccccccccccccccccccccccccccc
Confidence 46999999999999999999999999999999999996 566 89999972 221
Q ss_pred C-------CC------CcCceEEEecCC-CCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHH
Q 000615 239 N-------EF------VPQRTCAYISQH-DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304 (1389)
Q Consensus 239 ~-------~~------~~~~~~~yv~Q~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~ 304 (1389)
. .. ..++.++|++|+ +.+++.+||+||+.|+....+.. ..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~----------~~---------------- 143 (520)
T TIGR03269 90 EPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYE----------GK---------------- 143 (520)
T ss_pred cccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCC----------HH----------------
Confidence 1 00 013569999997 67888899999998864322110 00
Q ss_pred HHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHH
Q 000615 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF 384 (1389)
Q Consensus 305 ~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~ 384 (1389)
+....++.+++.+||++..+..+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.
T Consensus 144 --------~~~~~~~~~l~~~gl~~~~~~~~~~-----LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 210 (520)
T TIGR03269 144 --------EAVGRAVDLIEMVQLSHRITHIARD-----LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNA 210 (520)
T ss_pred --------HHHHHHHHHHHHcCChhhhhcCccc-----CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHH
Confidence 0012356789999998888888876 999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhh
Q 000615 385 LKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQY 464 (1389)
Q Consensus 385 L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~ 464 (1389)
|+++++..+.|+|++.|.+ ..+.++||+|++|++|++++.|+++++.+.+.. .
T Consensus 211 l~~l~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~----------------~---------- 263 (520)
T TIGR03269 211 LEEAVKASGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFME----------------G---------- 263 (520)
T ss_pred HHHHHHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHHHHh----------------h----------
Confidence 9999765567777766654 567789999999999999988876654210000 0
Q ss_pred hhccCCCCCCCChhHHHHHHHhCccchhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHH
Q 000615 465 WFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIF 544 (1389)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~ 544 (1389)
T Consensus 264 -------------------------------------------------------------------------------- 263 (520)
T TIGR03269 264 -------------------------------------------------------------------------------- 263 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHH
Q 000615 545 KTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIW 624 (1389)
Q Consensus 545 ~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~ 624 (1389)
..
T Consensus 264 -------------------------~~----------------------------------------------------- 265 (520)
T TIGR03269 264 -------------------------VS----------------------------------------------------- 265 (520)
T ss_pred -------------------------ch-----------------------------------------------------
Confidence 00
Q ss_pred HHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhc
Q 000615 625 LLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFV 704 (1389)
Q Consensus 625 l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~ 704 (1389)
.
T Consensus 266 --------------------------~----------------------------------------------------- 266 (520)
T TIGR03269 266 --------------------------E----------------------------------------------------- 266 (520)
T ss_pred --------------------------h-----------------------------------------------------
Confidence 0
Q ss_pred cccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHH
Q 000615 705 MAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFL 784 (1389)
Q Consensus 705 i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~ 784 (1389)
+. . .. .
T Consensus 267 -----~~--------------------------~------~~----~--------------------------------- 272 (520)
T TIGR03269 267 -----VE--------------------------K------EC----E--------------------------------- 272 (520)
T ss_pred -----hc--------------------------c------cc----c---------------------------------
Confidence 00 0 00 0
Q ss_pred HHHHHHHHHHhcCCCCCCCceeeeccchhhhccCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceee
Q 000615 785 FNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFV 864 (1389)
Q Consensus 785 f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 864 (1389)
. . . ....++++|+++.+
T Consensus 273 -------------------------------------~------------~------~--------~~~~l~~~~l~~~~ 289 (520)
T TIGR03269 273 -------------------------------------V------------E------V--------GEPIIKVRNVSKRY 289 (520)
T ss_pred -------------------------------------c------------C------C--------CCceEEEeccEEEe
Confidence 0 0 0 00125666766554
Q ss_pred eccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEc-Ccc---CCh-----
Q 000615 865 DMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS-GYP---KNQ----- 935 (1389)
Q Consensus 865 ~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~-g~~---~~~----- 935 (1389)
+.. ..+.+.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++ |.+ ...
T Consensus 290 ~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~~g~~~~~~~~~~~~~ 359 (520)
T TIGR03269 290 ISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP--TSGEVNVRVGDEWVDMTKPGPDG 359 (520)
T ss_pred ccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEEecCCccccccccchhh
Confidence 210 01124699999999999999999999999999999999997652 47999996 532 111
Q ss_pred -hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-----cccccccCCCCCCCCH
Q 000615 936 -ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-----LNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 936 -~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-----~~~~~~g~~~~~~LSg 1009 (1389)
...++.+||++|++.+++.+||.|++.+...+. ...+..++.+.++++.++|.+ ..++. +..|||
T Consensus 360 ~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-----~~~LSg 430 (520)
T TIGR03269 360 RGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKY-----PDELSE 430 (520)
T ss_pred HHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCC-----hhhCCH
Confidence 123456999999998889999999998754321 122333456889999999975 34554 457999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++ |.|||++||+++ .+.+.||++++|.+ |+++.
T Consensus 431 Gq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~~l~~-G~i~~ 508 (520)
T TIGR03269 431 GERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAALMRD-GKIVK 508 (520)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999765 899999999986 57788999999985 88888
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 509 ~g~~ 512 (520)
T TIGR03269 509 IGDP 512 (520)
T ss_pred ECCH
Confidence 8864
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=660.76 Aligned_cols=210 Identities=22% Similarity=0.269 Sum_probs=177.7
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++.++. +.+.+|+|||++|+|||++||+|+||||||||+++|+|... .+|+|.|||.+
T Consensus 1216 g~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~---~~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS---TEGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEE
Confidence 46999999987742 12469999999999999999999999999999999999764 37999999998
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
+. ...+|+.++||||++.+++. |++|||.... . ..++.++++++.++|.+. .|+.+|.
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~----~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------Q----WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------C----CCHHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 65 35678899999999999875 9999994321 1 124458899999998654 3455554
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
+..+||||||||+||||||+++|+||+||||||+||+.+...|++.|++.. +++|||+++|+++ ....||++++|++
T Consensus 1350 ~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~--ti~~~DrIlvL~~ 1426 (1490)
T TIGR01271 1350 GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVE--ALLECQQFLVIEG 1426 (1490)
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999875 4799999999964 6678999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|++
T Consensus 1427 -G~ivE~g~p 1435 (1490)
T TIGR01271 1427 -SSVKQYDSI 1435 (1490)
T ss_pred -CEEEEeCCH
Confidence 899999875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=611.29 Aligned_cols=451 Identities=22% Similarity=0.297 Sum_probs=342.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC----cCceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.
T Consensus 17 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 17 VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD---AGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 36999999999999999999999999999999999999887 899999999875432 13579999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++......+. .... +....++.+++.+||++..++.+++
T Consensus 94 ~tv~~~l~~~~~~~~~~~-------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGI-------VNRR------------------------LLNYEAREQLEHLGVDIDPDTPLKY-- 140 (501)
T ss_pred CCHHHHHHhcccccccCC-------CCHH------------------------HHHHHHHHHHHHcCCCCCcCCchhh--
Confidence 999999988532100000 0000 0012356688999998877888776
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~ 215 (501)
T PRK11288 141 ---LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKD 215 (501)
T ss_pred ---CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999875 467777766654 578899999999999
Q ss_pred CeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhcC
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRV 499 (1389)
Q Consensus 420 G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~ 499 (1389)
|+++..++..+. . +.++..+.
T Consensus 216 G~i~~~~~~~~~-----------------------~--------------------~~~~~~~~---------------- 236 (501)
T PRK11288 216 GRYVATFDDMAQ-----------------------V--------------------DRDQLVQA---------------- 236 (501)
T ss_pred CEEEeecCcccc-----------------------C--------------------CHHHHHHH----------------
Confidence 999854421100 0 00000000
Q ss_pred CCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHHH
Q 000615 500 PYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGA 579 (1389)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g~ 579 (1389)
+.... .
T Consensus 237 ------------------------------------------------------------~~~~~-----~--------- 242 (501)
T PRK11288 237 ------------------------------------------------------------MVGRE-----I--------- 242 (501)
T ss_pred ------------------------------------------------------------hcCCC-----c---------
Confidence 00000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHHH
Q 000615 580 LFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQF 659 (1389)
Q Consensus 580 lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~ 659 (1389)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCCc
Q 000615 660 LAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGR 739 (1389)
Q Consensus 660 l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~~ 739 (1389)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccCc
Q 000615 740 WDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGH 819 (1389)
Q Consensus 740 ~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 819 (1389)
.. . .
T Consensus 243 ------~~---~---------------------------------------------~---------------------- 246 (501)
T PRK11288 243 ------GD---I---------------------------------------------Y---------------------- 246 (501)
T ss_pred ------cc---c---------------------------------------------c----------------------
Confidence 00 0 0
Q ss_pred ccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEe
Q 000615 820 EAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALM 899 (1389)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~ 899 (1389)
. . .+ . . ..+..++++|+++ ..+|+|+|++|++||++||+
T Consensus 247 --~---~-~~-----~-------~------~~~~~l~~~~~~~-----------------~~~l~~isl~i~~Ge~~~ii 285 (501)
T PRK11288 247 --G---Y-RP-----R-------P------LGEVRLRLDGLKG-----------------PGLREPISFSVRAGEIVGLF 285 (501)
T ss_pred --c---c-cc-----c-------C------CCCcEEEEecccc-----------------CCcccceeEEEeCCcEEEEE
Confidence 0 0 00 0 0 0011356666652 13899999999999999999
Q ss_pred ccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCC---CCCCCCCHHHHHHHHHHhhcCC-
Q 000615 900 GVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAWLRLSS- 971 (1389)
Q Consensus 900 G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~~~lr~~~- 971 (1389)
||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++ .+++.+|+.|++.+........
T Consensus 286 G~NGsGKSTLlk~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~ 363 (501)
T PRK11288 286 GLVGAGRSELMKLLYGATR--RTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRA 363 (501)
T ss_pred cCCCCCHHHHHHHHcCCCc--CCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhccc
Confidence 9999999999999999765 347999999976532 22345789999986 4788999999998753211100
Q ss_pred C--CcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHH
Q 000615 972 D--VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1389)
Q Consensus 972 ~--~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1048 (1389)
. ......++.++++++.+++. +..++.+ ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.
T Consensus 364 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 438 (501)
T PRK11288 364 GCLINNRWEAENADRFIRSLNIKTPSREQLI-----MNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNV 438 (501)
T ss_pred ccccChHHHHHHHHHHHHhcCcccCCccCcc-----ccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHH
Confidence 0 01223345688999999994 5667764 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
|+++++.|.|||++|||++ ++.+.||++++|.+ |++++.|..++
T Consensus 439 l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~-g~i~~~~~~~~ 482 (501)
T PRK11288 439 IYELAAQGVAVLFVSSDLP-EVLGVADRIVVMRE-GRIAGELAREQ 482 (501)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEEC-CEEEEEEcccc
Confidence 9999888999999999986 57788999999984 88999887654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=612.17 Aligned_cols=459 Identities=22% Similarity=0.294 Sum_probs=343.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|||+++++|++++|+||||||||||+++|+|.++|. ..+|+|.++|+++..... ++.++||+|++.+++.
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 92 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPE 92 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCC
Confidence 46999999999999999999999999999999999998761 128999999998865432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccc-cccccCc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA-DTMVGDE 338 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~-dt~vg~~ 338 (1389)
+||+||+.++......+... ... +....++.+++.+||++.. ++.+++
T Consensus 93 ~tv~~~l~~~~~~~~~~~~~------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~- 141 (500)
T TIGR02633 93 LSVAENIFLGNEITLPGGRM------AYN------------------------AMYLRAKNLLRELQLDADNVTRPVGD- 141 (500)
T ss_pred CcHHHHHHhhcccccccccc------CHH------------------------HHHHHHHHHHHHcCCCCCcccCchhh-
Confidence 99999998864321000000 000 0012356688999998764 566776
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.| ...++.++||+|++|+
T Consensus 142 ----LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitH-d~~~~~~~~d~i~~l~ 215 (500)
T TIGR02633 142 ----YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISH-KLNEVKAVCDTICVIR 215 (500)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC-cHHHHHHhCCEEEEEe
Confidence 999999999999999999999999999999999999999999999975 4667766655 4558889999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhc
Q 000615 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 498 (1389)
+|++++.|+.+++.. .+ ..+
T Consensus 216 ~G~i~~~~~~~~~~~---------------~~-----------------------------~~~---------------- 235 (500)
T TIGR02633 216 DGQHVATKDMSTMSE---------------DD-----------------------------IIT---------------- 235 (500)
T ss_pred CCeEeeecCcccCCH---------------HH-----------------------------HHH----------------
Confidence 999987664322100 00 000
Q ss_pred CCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHH
Q 000615 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1389)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g 578 (1389)
. +.
T Consensus 236 --------------------------------~----------------------------~~----------------- 238 (500)
T TIGR02633 236 --------------------------------M----------------------------MV----------------- 238 (500)
T ss_pred --------------------------------H----------------------------Hh-----------------
Confidence 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 000615 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1389)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 658 (1389)
+.
T Consensus 239 --------------------------------------------------------------------~~---------- 240 (500)
T TIGR02633 239 --------------------------------------------------------------------GR---------- 240 (500)
T ss_pred --------------------------------------------------------------------Cc----------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCC
Q 000615 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1389)
Q Consensus 659 ~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1389)
+ .+.
T Consensus 241 -----------------------------------------------~---~~~-------------------------- 244 (500)
T TIGR02633 241 -----------------------------------------------E---ITS-------------------------- 244 (500)
T ss_pred -----------------------------------------------c---ccc--------------------------
Confidence 0 000
Q ss_pred ccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccC
Q 000615 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1389)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1389)
..+.
T Consensus 245 ----~~~~------------------------------------------------------------------------ 248 (500)
T TIGR02633 245 ----LYPH------------------------------------------------------------------------ 248 (500)
T ss_pred ----cccc------------------------------------------------------------------------
Confidence 0000
Q ss_pred cccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEE
Q 000615 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1389)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al 898 (1389)
. . . +. ....++++|+++.+.. .+++.+|+|+||+|++||++||
T Consensus 249 ---~----~-------~------~~-------~~~~l~~~~l~~~~~~----------~~~~~~l~~is~~i~~Ge~~~l 291 (500)
T TIGR02633 249 ---E----P-------H------EI-------GDVILEARNLTCWDVI----------NPHRKRVDDVSFSLRRGEILGV 291 (500)
T ss_pred ---c----c-------c------CC-------CCceEEEeCCcccccc----------cccccccccceeEEeCCcEEEE
Confidence 0 0 0 00 0012566676643210 0123599999999999999999
Q ss_pred eccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCC---CCCCCCCHHHHHHHHHH--hhc
Q 000615 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAW--LRL 969 (1389)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~~~--lr~ 969 (1389)
+||||||||||+++|+|..++ +.+|+|.++|.+... ...++.+||++|+. .+++.+||+|++.+... ...
T Consensus 292 ~G~NGsGKSTLl~~l~G~~~p-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~ 370 (500)
T TIGR02633 292 AGLVGAGRTELVQALFGAYPG-KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCF 370 (500)
T ss_pred eCCCCCCHHHHHHHHhCCCCC-CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhcc
Confidence 999999999999999997642 137999999987532 23456799999995 57889999999987532 111
Q ss_pred CCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHH
Q 000615 970 SSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048 (1389)
Q Consensus 970 ~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~ 1048 (1389)
.........++.++++++.+++.+ ..+..+ ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.
T Consensus 371 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 445 (500)
T TIGR02633 371 KMRIDAAAELQIIGSAIQRLKVKTASPFLPI-----GRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKL 445 (500)
T ss_pred CCcCCHHHHHHHHHHHHHhcCccCCCccCcc-----ccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHH
Confidence 001122334456889999999964 456654 47999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1049 VRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1049 l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|++++++|.|||++||+++ ++.+.||++++|.+ |+++..++.
T Consensus 446 l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~-G~i~~~~~~ 487 (500)
T TIGR02633 446 INQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGE-GKLKGDFVN 487 (500)
T ss_pred HHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEEcc
Confidence 9999888999999999986 57788999999985 788877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-61 Score=601.63 Aligned_cols=449 Identities=20% Similarity=0.294 Sum_probs=340.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKD---SGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---ceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 46999999999999999999999999999999999999887 9999999998764322 3569999999988999
Q ss_pred CCHHHHHHHhhhc-cCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 260 MTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 260 lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
+||+||+.++... .+.. .+.+ +....++.+++.+||++..++.+++
T Consensus 88 ~tv~~~l~~~~~~~~~~~-------------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~- 134 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMF-------------------VDQD-------------KMYRDTKAIFDELDIDIDPRAKVAT- 134 (491)
T ss_pred CCHHHHhhcccccccccc-------------------cCHH-------------HHHHHHHHHHHHcCCCCCccCchhh-
Confidence 9999999875321 0000 0000 0011356688899999888888876
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|+ ..++.++||+|++|+
T Consensus 135 ----LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~-~~~~~~~~d~i~~l~ 208 (491)
T PRK10982 135 ----LSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHK-MEEIFQLCDEITILR 208 (491)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecC-HHHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 46777776654 458889999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhc
Q 000615 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 498 (1389)
+|+++..|+.+++.. .+ ..+.+
T Consensus 209 ~G~i~~~~~~~~~~~---------------~~-----------------------------~~~~~-------------- 230 (491)
T PRK10982 209 DGQWIATQPLAGLTM---------------DK-----------------------------IIAMM-------------- 230 (491)
T ss_pred CCEEEeecChhhCCH---------------HH-----------------------------HHHHH--------------
Confidence 999998877643200 00 00000
Q ss_pred CCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHH
Q 000615 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1389)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g 578 (1389)
....
T Consensus 231 --------------------------------------------------------------~~~~-------------- 234 (491)
T PRK10982 231 --------------------------------------------------------------VGRS-------------- 234 (491)
T ss_pred --------------------------------------------------------------hCCC--------------
Confidence 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 000615 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1389)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 658 (1389)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCC
Q 000615 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1389)
Q Consensus 659 ~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1389)
.
T Consensus 235 ---------------------------------------------------~---------------------------- 235 (491)
T PRK10982 235 ---------------------------------------------------L---------------------------- 235 (491)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 0
Q ss_pred ccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccC
Q 000615 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1389)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1389)
.. . +
T Consensus 236 -------~~---~------------~------------------------------------------------------ 239 (491)
T PRK10982 236 -------TQ---R------------F------------------------------------------------------ 239 (491)
T ss_pred -------cc---c------------c------------------------------------------------------
Confidence 00 0 0
Q ss_pred cccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEE
Q 000615 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1389)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al 898 (1389)
+.. . .. + .+..++++|+++. .+.+|+|||+.+++||++||
T Consensus 240 ----------~~~---~------~~-----~-~~~~i~~~~l~~~---------------~~~~l~~vsl~i~~Ge~~~l 279 (491)
T PRK10982 240 ----------PDK---E------NK-----P-GEVILEVRNLTSL---------------RQPSIRDVSFDLHKGEILGI 279 (491)
T ss_pred ----------ccc---c------CC-----C-CCcEEEEeCcccc---------------cCcccceeeEEEeCCcEEEE
Confidence 000 0 00 0 0113677777653 12489999999999999999
Q ss_pred eccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCC---CCCCCCCHHHHHHHHHH--hhc
Q 000615 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQND---IHSPYVTVYESLLYSAW--LRL 969 (1389)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~---~~~~~lTv~E~l~f~~~--lr~ 969 (1389)
+||||||||||+++|+|...+ .+|+|.++|.++.. ...++.++|++|++ .+++.+|+.++..+... ...
T Consensus 280 ~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (491)
T PRK10982 280 AGLVGAKRTDIVETLFGIREK--SAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKN 357 (491)
T ss_pred ecCCCCCHHHHHHHHcCCCcC--CccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcc
Confidence 999999999999999997653 47999999976532 12345689999985 36788888877433210 100
Q ss_pred CCC-CcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHH
Q 000615 970 SSD-VDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1389)
Q Consensus 970 ~~~-~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~ 1047 (1389)
... ......++.+.++++.+++. +..+.. +..|||||||||+||++|+.+|+||||||||+|||+.++..+++
T Consensus 358 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~ 432 (491)
T PRK10982 358 KVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ-----IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQ 432 (491)
T ss_pred cccccCcHHHHHHHHHHHHhcCccCCCcccc-----cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHH
Confidence 001 11223345678899999985 445655 45799999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1048 TVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1048 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
.|+++.++|+|||++||+++ ++.+.||++++|.+ |+++..++.
T Consensus 433 ~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~-g~i~~~~~~ 475 (491)
T PRK10982 433 LIAELAKKDKGIIIISSEMP-ELLGITDRILVMSN-GLVAGIVDT 475 (491)
T ss_pred HHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEEC-CEEEEEEcc
Confidence 99999888999999999986 57789999999985 788876654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-60 Score=589.73 Aligned_cols=447 Identities=19% Similarity=0.281 Sum_probs=328.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCC--C-
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLH--H- 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~--~- 257 (1389)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.. +
T Consensus 16 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~---~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (490)
T PRK10938 16 TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLL---SGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLS 92 (490)
T ss_pred eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CceEEECCcccccCCHHHHHHHhceeccCcchhhcc
Confidence 35999999999999999999999999999999999999887 8999999977643221 2458999998542 1
Q ss_pred -----CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccc
Q 000615 258 -----GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1389)
Q Consensus 258 -----~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d 332 (1389)
..+||+|++.+.. +....++.+++.+||++..|
T Consensus 93 ~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~l~~~~~ 130 (490)
T PRK10938 93 PGEDDTGRTTAEIIQDEV------------------------------------------KDPARCEQLAQQFGITALLD 130 (490)
T ss_pred cchhhccccHHHhcccch------------------------------------------hHHHHHHHHHHHcCCHhhhh
Confidence 1467777764310 00113456788999998888
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|+|++.|+ ..++.++||
T Consensus 131 ~~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-g~tvii~tH~-~~~~~~~~d 203 (490)
T PRK10938 131 RRFKY-----LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQS-GITLVLVLNR-FDEIPDFVQ 203 (490)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhc-CCeEEEEeCC-HHHHHhhCC
Confidence 88887 9999999999999999999999999999999999999999999998764 6777776655 457889999
Q ss_pred eEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchh
Q 000615 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQ 492 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 492 (1389)
+|++|++|+++.+|+++++.+. +.+.....
T Consensus 204 ~v~~l~~G~i~~~~~~~~~~~~---------------~~~~~~~~----------------------------------- 233 (490)
T PRK10938 204 FAGVLADCTLAETGEREEILQQ---------------ALVAQLAH----------------------------------- 233 (490)
T ss_pred EEEEEECCEEEEeCCHHHHhcc---------------hhhhhhhh-----------------------------------
Confidence 9999999999999887654210 00000000
Q ss_pred HHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCC
Q 000615 493 IASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNG 572 (1389)
Q Consensus 493 ~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~ 572 (1389)
.+ ....
T Consensus 234 ------------------------------------~~--------------------------------------~~~~ 239 (490)
T PRK10938 234 ------------------------------------SE--------------------------------------QLEG 239 (490)
T ss_pred ------------------------------------hh--------------------------------------ccCc
Confidence 00 0000
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchH
Q 000615 573 GSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAA 652 (1389)
Q Consensus 573 ~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~ 652 (1389)
T Consensus 240 -------------------------------------------------------------------------------- 239 (490)
T PRK10938 240 -------------------------------------------------------------------------------- 239 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHH
Q 000615 653 SRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLV 732 (1389)
Q Consensus 653 ~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~ 732 (1389)
.
T Consensus 240 ---------------------------------------------------------~---------------------- 240 (490)
T PRK10938 240 ---------------------------------------------------------V---------------------- 240 (490)
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred HHhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccch
Q 000615 733 NEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGE 812 (1389)
Q Consensus 733 nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~ 812 (1389)
. .+.. .
T Consensus 241 --------~--~~~~---~------------------------------------------------------------- 246 (490)
T PRK10938 241 --------Q--LPEP---D------------------------------------------------------------- 246 (490)
T ss_pred --------c--cCcc---c-------------------------------------------------------------
Confidence 0 0000 0
Q ss_pred hhhccCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeC
Q 000615 813 KQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRP 892 (1389)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 892 (1389)
. ...+ . . . . .....++++|+++.++ ++.+|+|+||++++
T Consensus 247 ---------~---~~~~-~---~--~---~-------~~~~~l~~~~l~~~~~-------------~~~il~~vsl~i~~ 285 (490)
T PRK10938 247 ---------E---PSAR-H---A--L---P-------ANEPRIVLNNGVVSYN-------------DRPILHNLSWQVNP 285 (490)
T ss_pred ---------c---cccc-c---c--c---C-------CCCceEEEeceEEEEC-------------CeeEEeeceEEEcC
Confidence 0 0000 0 0 0 0 0011367778776542 24599999999999
Q ss_pred CeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCCCCCC--CCCHHHHHHHHHH
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSP--YVTVYESLLYSAW 966 (1389)
Q Consensus 893 Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~--~lTv~E~l~f~~~ 966 (1389)
||++||+||||||||||+++|+|.... ..+|+|.++|.+... ...++.+||++|++.+++ ..|++|++.+...
T Consensus 286 Ge~~~i~G~NGsGKSTLl~~l~G~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~ 364 (490)
T PRK10938 286 GEHWQIVGPNGAGKSTLLSLITGDHPQ-GYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF 364 (490)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCc-ccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccc
Confidence 999999999999999999999996431 137999999976421 124567999999876544 3577776654321
Q ss_pred h--hcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHH
Q 000615 967 L--RLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1389)
Q Consensus 967 l--r~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1043 (1389)
- ....... .+.++.++++++.++|.+ ..+..+ ..|||||||||+||++|+.+|++|+|||||+|||+.++.
T Consensus 365 ~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 438 (490)
T PRK10938 365 DSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQ 438 (490)
T ss_pred cccccccCCC-HHHHHHHHHHHHHcCCchhhccCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 0 1111111 223456889999999986 666653 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC-CEEEEEecCccHHHHH-hhCeEEEEecCcEEEEe
Q 000615 1044 IVMRTVRNTVDTG-RTVVCTIHQPSIDIFE-AFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1044 ~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~-~~d~~l~l~~gG~~~~~ 1089 (1389)
.+++.|++++++| .|||++||+++ ++.+ .+|++++|.+ |++++.
T Consensus 439 ~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~~d~v~~l~~-G~i~~~ 484 (490)
T PRK10938 439 LVRRFVDVLISEGETQLLFVSHHAE-DAPACITHRLEFVPD-GDIYRY 484 (490)
T ss_pred HHHHHHHHHHhcCCcEEEEEecchh-hhhhhhheeEEEecC-CceEEe
Confidence 9999999998776 47999999976 4555 4799999975 666554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-58 Score=508.55 Aligned_cols=470 Identities=24% Similarity=0.346 Sum_probs=356.2
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCceeEEEECCeeCCCCCcC-------ceEEEecC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEFVPQ-------RTCAYISQ 252 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~~~~~-------~~~~yv~Q 252 (1389)
....++++|||.+++||.+||+|.||||||-..+.+.|+++. ....+|+|.|+|.++-....+ ..|++++|
T Consensus 21 ~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQ 100 (534)
T COG4172 21 GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQ 100 (534)
T ss_pred cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEec
Confidence 456799999999999999999999999999999999999976 345689999999987544321 47999999
Q ss_pred CC--CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccc
Q 000615 253 HD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1389)
Q Consensus 253 ~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~ 330 (1389)
+| .+.|-.|+...+.-..++.. .+++ ...+.++-+.|+..|+++-
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hr---------g~~~------------------------~~Ar~r~lelL~~VgI~~p 147 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHR---------GLSR------------------------AAARARALELLELVGIPEP 147 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHh---------cccH------------------------HHHHHHHHHHHHHcCCCch
Confidence 97 45566677777755443321 1111 1123345667888899865
Q ss_pred ccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhh
Q 000615 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1389)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~ 410 (1389)
.... +++...|||||||||.||.||+.+|++|+-||||++||...+.+|.+.|+++.+..|..+++ ++|...-+-++
T Consensus 148 ~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lf-ITHDL~iVr~~ 224 (534)
T COG4172 148 EKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILF-ITHDLGIVRKF 224 (534)
T ss_pred hhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEE-EeccHHHHHHh
Confidence 4333 24556799999999999999999999999999999999999999999999999887766555 55666678899
Q ss_pred cCeEEEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccc
Q 000615 411 FDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMG 490 (1389)
Q Consensus 411 ~D~iilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 490 (1389)
+|+|+||.+|+++++|+.+++.. .|.+ ||.
T Consensus 225 ADrV~VM~~G~ivE~~~t~~lF~--------~PqH-------------------------pYT----------------- 254 (534)
T COG4172 225 ADRVYVMQHGEIVETGTTETLFA--------APQH-------------------------PYT----------------- 254 (534)
T ss_pred hhhEEEEeccEEeecCcHHHHhh--------CCCC-------------------------hHH-----------------
Confidence 99999999999999999877632 1111 000
Q ss_pred hhHHhhhcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCC
Q 000615 491 QQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDM 570 (1389)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~ 570 (1389)
|.++.
T Consensus 255 ---------------------------------------r~Ll~------------------------------------ 259 (534)
T COG4172 255 ---------------------------------------RKLLA------------------------------------ 259 (534)
T ss_pred ---------------------------------------HHHHh------------------------------------
Confidence 00000
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcc
Q 000615 571 NGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDP 650 (1389)
Q Consensus 571 ~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~ 650 (1389)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHH
Q 000615 651 AASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSL 730 (1389)
Q Consensus 651 ~~~~ff~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al 730 (1389)
T Consensus 260 -------------------------------------------------------------------------------- 259 (534)
T COG4172 260 -------------------------------------------------------------------------------- 259 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhcCCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeecc
Q 000615 731 LVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEED 810 (1389)
Q Consensus 731 ~~nef~~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~ 810 (1389)
. .+. |.
T Consensus 260 --a----------eP~--------g~------------------------------------------------------ 265 (534)
T COG4172 260 --A----------EPS--------GD------------------------------------------------------ 265 (534)
T ss_pred --c----------CCC--------CC------------------------------------------------------
Confidence 0 000 00
Q ss_pred chhhhccCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEE
Q 000615 811 GEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVF 890 (1389)
Q Consensus 811 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i 890 (1389)
..+ ..+..+.-++.+|++..++.+...-. -..+...++++||++.
T Consensus 266 ----------------~~p-----------------~~~~~~~ll~~~~v~v~f~i~~g~~~--r~~~~~~AVd~isl~L 310 (534)
T COG4172 266 ----------------PPP-----------------LPEDAPVLLEVEDLRVWFPIKGGFLR--RTVDHLRAVDGISLTL 310 (534)
T ss_pred ----------------CCC-----------------CCCCCCceEEecceEEEEecCCcccc--ccchheEEeccceeEe
Confidence 000 00001112333333333322211100 0122357999999999
Q ss_pred eCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCC--CCCCCCHHHHHH
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDI--HSPYVTVYESLL 962 (1389)
Q Consensus 891 ~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~--~~~~lTv~E~l~ 962 (1389)
++||.+||+|.||||||||=.+|.+...+ +|+|.++|.++.. ..+|+.+-.|+|||. +.|.+||.|-+.
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s---~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~ 387 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPS---QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIE 387 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCc---CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhh
Confidence 99999999999999999999999987653 5999999988653 346678999999985 789999999988
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHH
Q 000615 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARA 1041 (1389)
Q Consensus 963 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~ 1041 (1389)
-+.....+ ..+..++++++.++|+.+||.+- .++. +..+|||||||++|||||+.+|++++||||||+||-.-
T Consensus 388 EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~RY-----PhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 388 EGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRNRY-----PHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred hhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhhcC-----CcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 77666543 45678899999999999999763 3333 46899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1042 AAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1042 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+.+|.++|+++.+ .|.+-++++||+. -+-.+||++++|. +|++++.||.
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~-~GkiVE~G~~ 511 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMR-DGKIVEQGPT 511 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEe-CCEEeeeCCH
Confidence 9999999999965 4899999999986 4777899999997 5899999996
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-57 Score=569.99 Aligned_cols=201 Identities=22% Similarity=0.309 Sum_probs=162.0
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+ +++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.+++ +
T Consensus 324 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~--p~~G~i~~~~-~- 386 (556)
T PRK11819 324 VIEAENLSKSF-------------GDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ--PDSGTIKIGE-T- 386 (556)
T ss_pred EEEEEeEEEEE-------------CCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECC-c-
Confidence 47788887654 23469999999999999999999999999999999999765 3479998854 1
Q ss_pred ChhhhhheeeEeccCC-CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000615 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGq 1011 (1389)
..+||++|++ .+++.+||.|++.+....... ... ...+.++++.+++.+ ..+.. +..|||||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~ 450 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKK-----VGVLSGGE 450 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999996 678889999999876432211 111 123457899999964 45555 34799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-Eec
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAG 1090 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~-~~g 1090 (1389)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++||+++ .+...||++++|.++|++. +.|
T Consensus 451 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g 526 (556)
T PRK11819 451 RNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEG 526 (556)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecC
Confidence 999999999999999999999999999999999999999872 4 8999999976 5777899999998667765 455
Q ss_pred C
Q 000615 1091 P 1091 (1389)
Q Consensus 1091 ~ 1091 (1389)
+
T Consensus 527 ~ 527 (556)
T PRK11819 527 N 527 (556)
T ss_pred C
Confidence 4
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=572.12 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=161.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+ +++.+|+|||++|++|+++||+||||||||||+++|+|... +.+|+|.+++.
T Consensus 322 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~--p~~G~i~~~~~-- 384 (552)
T TIGR03719 322 VIEAENLSKGF-------------GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ--PDSGTIKIGET-- 384 (552)
T ss_pred EEEEeeEEEEE-------------CCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCeEEEECCc--
Confidence 36788877644 23469999999999999999999999999999999999765 34799988542
Q ss_pred ChhhhhheeeEeccCC-CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHH
Q 000615 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGq 1011 (1389)
..+||++|++ .+++.+||.|++.+...... .... ...+.++++.+++.+ ..+.. +..|||||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGe 448 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKK-----VGQLSGGE 448 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCc-----hhhCCHHH
Confidence 1489999986 47788999999987642211 1111 123557899999964 45555 34799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-Eec
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAG 1090 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~-~~g 1090 (1389)
||||+||++|+.+|++|||||||+|||+.++..+++.|+++. .|||++||+++ .+...||++++|+++|++. +.|
T Consensus 449 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g 524 (552)
T TIGR03719 449 RNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---GCAVVISHDRW-FLDRIATHILAFEGDSHVEWFEG 524 (552)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---CeEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCC
Confidence 999999999999999999999999999999999999999872 48999999976 5777899999998666765 445
Q ss_pred C
Q 000615 1091 P 1091 (1389)
Q Consensus 1091 ~ 1091 (1389)
+
T Consensus 525 ~ 525 (552)
T TIGR03719 525 N 525 (552)
T ss_pred C
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=568.63 Aligned_cols=198 Identities=19% Similarity=0.286 Sum_probs=162.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.
T Consensus 319 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p--~~G~i~~~~~-- 381 (530)
T PRK15064 319 ALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP--DSGTVKWSEN-- 381 (530)
T ss_pred eEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCc--
Confidence 478888876542 24699999999999999999999999999999999997653 4799999873
Q ss_pred ChhhhhheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000615 934 NQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgG 1010 (1389)
+.+||++|++. +.+.+||+|++.+.. .. . ..++.++++++.+++. +..+.. +..||||
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG 442 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKS-----VKVLSGG 442 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCc-----ccccCHH
Confidence 45899999864 456799999986421 11 1 1124578899999994 556665 4579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-Ee
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~-~~ 1089 (1389)
|||||+||++|+.+|+||+|||||+|||+.+...+.+.|+++ +.|||++||+++ .+...||++++|.+ |+++ +.
T Consensus 443 q~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~-g~i~~~~ 517 (530)
T PRK15064 443 EKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITP-DGVVDFS 517 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEcC
Confidence 999999999999999999999999999999999999999886 459999999986 57778999999985 6766 77
Q ss_pred cCC
Q 000615 1090 GPL 1092 (1389)
Q Consensus 1090 g~~ 1092 (1389)
|+.
T Consensus 518 g~~ 520 (530)
T PRK15064 518 GTY 520 (530)
T ss_pred CCH
Confidence 764
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-56 Score=553.64 Aligned_cols=211 Identities=21% Similarity=0.251 Sum_probs=170.1
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ + ..|+++|++|++||++||+||||||||||+++|+|...+ .+|+|.++
T Consensus 340 ~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p--~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP--DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEEe----
Confidence 367777765431 2 258999999999999999999999999999999997653 47888875
Q ss_pred ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000615 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 1013 (1389)
..++|++|+..+.+.+||+|++.+.... .. . ...++++++.++|.+..++.+ ..|||||||
T Consensus 400 ------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~---~~--~---~~~~~~~L~~l~l~~~~~~~~-----~~LSGGe~Q 460 (590)
T PRK13409 400 ------LKISYKPQYIKPDYDGTVEDLLRSITDD---LG--S---SYYKSEIIKPLQLERLLDKNV-----KDLSGGELQ 460 (590)
T ss_pred ------eeEEEecccccCCCCCcHHHHHHHHhhh---cC--h---HHHHHHHHHHCCCHHHHhCCc-----ccCCHHHHH
Confidence 1489999998888899999999874211 11 1 124688999999988777764 579999999
Q ss_pred HHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1014 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++||+. .+...+|++++|. |++...|..
T Consensus 461 RvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~--~~~~~~g~~ 537 (590)
T PRK13409 461 RVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE--GEPGKHGHA 537 (590)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc--Ccceeeeec
Confidence 999999999999999999999999999999999999999764 899999999976 5677899999995 466666664
Q ss_pred Ccc---hhHHHHHHHhC
Q 000615 1093 GHE---SHKLIEYFEAV 1106 (1389)
Q Consensus 1093 ~~~---~~~~~~~f~~~ 1106 (1389)
... .+.+..|++.+
T Consensus 538 ~~~~~~~~~~~~~l~~~ 554 (590)
T PRK13409 538 SGPMDMREGMNRFLKEL 554 (590)
T ss_pred CCchhHHHHHHHHHHHc
Confidence 322 23345566665
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=511.24 Aligned_cols=451 Identities=24% Similarity=0.367 Sum_probs=350.4
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC----ceEEEecCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHH 257 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~ 257 (1389)
...++|+|||+.+++||+++|+|.||||||||+|+|+|.++|+ +|+|.++|++.....++ ..|+.|.|+..+.
T Consensus 19 ggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~---~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~ 95 (500)
T COG1129 19 GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPD---SGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95 (500)
T ss_pred CCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCC---CceEEECCEEccCCCHHHHHhCCcEEEeechhcc
Confidence 5678999999999999999999999999999999999999998 99999999998765553 5699999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
|+|||.|||.++....... ... .+ ......+..+|+.+|+....++.|++
T Consensus 96 p~LsVaeNifLgre~~~~~---g~i---d~------------------------~~m~~~A~~~l~~lg~~~~~~~~v~~ 145 (500)
T COG1129 96 PNLSVAENIFLGREPTRRF---GLI---DR------------------------KAMRRRARELLARLGLDIDPDTLVGD 145 (500)
T ss_pred CCccHHHHhhcccccccCC---Ccc---CH------------------------HHHHHHHHHHHHHcCCCCChhhhhhh
Confidence 9999999998765432210 000 00 01123456789999997669999998
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
||+||||-|.||||+..++++++|||||++|+...+..+.+.++++.. .|.++ +.+.|..+|++++||+|.||
T Consensus 146 -----LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~i-i~ISHrl~Ei~~i~DritVl 218 (500)
T COG1129 146 -----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAI-IYISHRLDEVFEIADRITVL 218 (500)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEE-EEEcCcHHHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999986 35554 45566889999999999999
Q ss_pred cCCeEEEecCh-hHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhh
Q 000615 418 SEGQIVYQGPR-DNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASD 496 (1389)
Q Consensus 418 ~~G~iv~~G~~-~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 496 (1389)
.+|+.+..++. .+.-. ++..
T Consensus 219 RDG~~v~~~~~~~~~~~--------------------------------------------~~lv--------------- 239 (500)
T COG1129 219 RDGRVVGTRPTAAETSE--------------------------------------------DELV--------------- 239 (500)
T ss_pred eCCEEeeecccccCCCH--------------------------------------------HHHH---------------
Confidence 99999876652 22100 0000
Q ss_pred hcCCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchh
Q 000615 497 LRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRY 576 (1389)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~ 576 (1389)
T Consensus 240 -------------------------------------------------------------------------------- 239 (500)
T COG1129 240 -------------------------------------------------------------------------------- 239 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHH
Q 000615 577 FGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFF 656 (1389)
Q Consensus 577 ~g~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff 656 (1389)
-.|+|=
T Consensus 240 ------------------------------------------------------------------~~MvGr-------- 245 (500)
T COG1129 240 ------------------------------------------------------------------RLMVGR-------- 245 (500)
T ss_pred ------------------------------------------------------------------HHhhCc--------
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhc
Q 000615 657 KQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFL 736 (1389)
Q Consensus 657 ~~~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~ 736 (1389)
+.
T Consensus 246 -----------------------------------------------------------------------------~~- 247 (500)
T COG1129 246 -----------------------------------------------------------------------------EL- 247 (500)
T ss_pred -----------------------------------------------------------------------------ch-
Confidence 00
Q ss_pred CCccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhc
Q 000615 737 GGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRA 816 (1389)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 816 (1389)
...|.
T Consensus 248 ~~~~~--------------------------------------------------------------------------- 252 (500)
T COG1129 248 EDLFP--------------------------------------------------------------------------- 252 (500)
T ss_pred hhhcc---------------------------------------------------------------------------
Confidence 00000
Q ss_pred cCcccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEE
Q 000615 817 SGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLT 896 (1389)
Q Consensus 817 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~ 896 (1389)
. . ... ...+..++++|++. ...++||||++++||++
T Consensus 253 ------------------~--~-~~~------~~~~~~l~v~~l~~-----------------~~~~~dvSf~vr~GEIl 288 (500)
T COG1129 253 ------------------E--P-PEE------GIGEPVLEVRNLSG-----------------GGKVRDVSFTVRAGEIL 288 (500)
T ss_pred ------------------c--c-ccc------CCCCcEEEEecCCC-----------------CCceeCceeEEeCCcEE
Confidence 0 0 000 00112345555542 12578999999999999
Q ss_pred EEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccC---CCCCCCCCHHHHHHHHHHhhc
Q 000615 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQN---DIHSPYVTVYESLLYSAWLRL 969 (1389)
Q Consensus 897 al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~---~~~~~~lTv~E~l~f~~~lr~ 969 (1389)
||-|-=|||+|-|+++|.|... ...|+|.+||.+... +..+..++|||.| +-+++.++|.||+.++...+.
T Consensus 289 GiaGLvGaGRTEl~~~lfG~~~--~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~ 366 (500)
T COG1129 289 GIAGLVGAGRTELARALFGARP--ASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRF 366 (500)
T ss_pred EEeccccCCHHHHHHHHhCCCc--CCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhh
Confidence 9999999999999999999543 347999999997542 3456679999976 457889999999988733222
Q ss_pred C-C-CCcHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHH
Q 000615 970 S-S-DVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046 (1389)
Q Consensus 970 ~-~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~ 1046 (1389)
. . -.+....++.+++..+.++++... +.. +..||||++|||.|||.|..+|+||+|||||.|+|.-+..+|.
T Consensus 367 ~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~-----v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy 441 (500)
T COG1129 367 SRRGLIDRRKERALAERYIRRLRIKTPSPEQP-----IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIY 441 (500)
T ss_pred ccccccChHHHHHHHHHHHHhcCcccCCccch-----hhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHH
Confidence 1 1 244555667789999999986432 233 4589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1047 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
++|++++++|++||++|-+.. |+...|||+++|. +|+++..=+
T Consensus 442 ~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~-~Gri~~e~~ 484 (500)
T COG1129 442 RLIRELAAEGKAILMISSELP-ELLGLSDRILVMR-EGRIVGELD 484 (500)
T ss_pred HHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEE-CCEEEEEec
Confidence 999999999999999999975 8999999999998 588876433
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-54 Score=549.40 Aligned_cols=202 Identities=24% Similarity=0.314 Sum_probs=160.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.+.++|+++.+ +++.+|+|||++|++|+++||+|||||||||||++|+|... +.+|+|.+ |.+.
T Consensus 319 ~l~~~~l~~~~-------------~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI-------------DGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ--ADSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE-------------CCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEE-CCCc
Confidence 46788887654 23469999999999999999999999999999999999754 34789988 4321
Q ss_pred ChhhhhheeeEeccCC-CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHH
Q 000615 934 NQETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGq 1011 (1389)
.+||++|+. .+++.+||.|++.+..... ... .....+.++++.+++. +..+..+ ..|||||
T Consensus 383 -------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgGe 445 (635)
T PRK11147 383 -------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPV-----KALSGGE 445 (635)
T ss_pred -------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChh-----hhCCHHH
Confidence 489999975 5788999999998753210 111 1123477889999885 3455553 4799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe-cCcEEEEec
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-RGGRVIYAG 1090 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-~gG~~~~~g 1090 (1389)
||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++||+.. .+...||+++++. +|....|.|
T Consensus 446 kqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g 521 (635)
T PRK11147 446 RNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVG 521 (635)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccC
Confidence 99999999999999999999999999999999999999876 459999999976 5777899999997 444445566
Q ss_pred CC
Q 000615 1091 PL 1092 (1389)
Q Consensus 1091 ~~ 1092 (1389)
..
T Consensus 522 ~y 523 (635)
T PRK11147 522 GY 523 (635)
T ss_pred CH
Confidence 53
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-54 Score=545.47 Aligned_cols=197 Identities=22% Similarity=0.334 Sum_probs=158.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.+.++|+++.+ +++.+|+|+|+.|++|+++||+|||||||||||++|+|... +.+|+|.+++.
T Consensus 312 ~l~~~~l~~~y-------------~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~--p~~G~i~~~~~-- 374 (638)
T PRK10636 312 LLKMEKVSAGY-------------GDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA--PVSGEIGLAKG-- 374 (638)
T ss_pred eEEEEeeEEEe-------------CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCC--
Confidence 47788887654 23569999999999999999999999999999999999765 34789988641
Q ss_pred ChhhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHH
Q 000615 934 NQETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgG 1010 (1389)
..+||++|+. .+.+..|+.+++.- . .. ......+.++++.+++.. ..+..+ ..||||
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~~----~~~~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 434 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---L--AP----QELEQKLRDYLGGFGFQGDKVTEET-----RRFSGG 434 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---h--Cc----hhhHHHHHHHHHHcCCChhHhcCch-----hhCCHH
Confidence 2589999974 34456677776531 1 11 112345788999999963 556654 479999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-Ee
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~-~~ 1089 (1389)
|||||+||++|+.+|+||||||||+|||+.+...+.+.|+++ +.|||++|||+. .+...||++++|.+ |+++ +.
T Consensus 435 ekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~gtvi~vSHd~~-~~~~~~d~i~~l~~-G~i~~~~ 509 (638)
T PRK10636 435 EKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EGALVVVSHDRH-LLRSTTDDLYLVHD-GKVEPFD 509 (638)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCeEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEcC
Confidence 999999999999999999999999999999999999999987 349999999976 57778999999985 7776 77
Q ss_pred cCC
Q 000615 1090 GPL 1092 (1389)
Q Consensus 1090 g~~ 1092 (1389)
|+.
T Consensus 510 g~~ 512 (638)
T PRK10636 510 GDL 512 (638)
T ss_pred CCH
Confidence 875
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=520.47 Aligned_cols=200 Identities=19% Similarity=0.249 Sum_probs=155.8
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ +++.+|+|+||+|++|++++|+|||||||||||++|+|...+ .+|+|.+++.
T Consensus 508 ~L~~~~ls~~y~------------~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p--~~G~I~~~~~-- 571 (718)
T PLN03073 508 IISFSDASFGYP------------GGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP--SSGTVFRSAK-- 571 (718)
T ss_pred eEEEEeeEEEeC------------CCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCceEEECCc--
Confidence 478888876542 123599999999999999999999999999999999997653 4789988652
Q ss_pred ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHH
Q 000615 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqr 1012 (1389)
..+||++|+.. +.+++.++..+......+ ... .+.+.++++.+++.+ ..+.. +..||||||
T Consensus 572 ------~~igyv~Q~~~--~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~-----~~~LSgGqk 633 (718)
T PLN03073 572 ------VRMAVFSQHHV--DGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQP-----MYTLSGGQK 633 (718)
T ss_pred ------eeEEEEecccc--ccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCC-----ccccCHHHH
Confidence 35899999753 445666664332111111 111 234788999999973 44554 457999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE-EecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI-YAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~-~~g~ 1091 (1389)
|||+||++|+.+|++|||||||+|||+.+...+.+.|++. +.|||++||++. .+...||++++|.+ |+++ +.|+
T Consensus 634 qRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~gtvIivSHd~~-~i~~~~drv~~l~~-G~i~~~~g~ 708 (718)
T PLN03073 634 SRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QGGVLMVSHDEH-LISGSVDELWVVSE-GKVTPFHGT 708 (718)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCC
Confidence 9999999999999999999999999999999998888765 349999999976 57778999999985 7777 6675
Q ss_pred C
Q 000615 1092 L 1092 (1389)
Q Consensus 1092 ~ 1092 (1389)
.
T Consensus 709 ~ 709 (718)
T PLN03073 709 F 709 (718)
T ss_pred H
Confidence 3
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=496.43 Aligned_cols=225 Identities=27% Similarity=0.298 Sum_probs=174.8
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1389)
..+++|+|+|+.+.+|+.++|+|+|||||||||++|+|...|+ +|+|...+ .-.++|++|++...+..|
T Consensus 14 g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~---~G~i~~~~--------~~~v~~l~Q~~~~~~~~t 82 (530)
T COG0488 14 GDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPD---SGEVTRPK--------GLRVGYLSQEPPLDPEKT 82 (530)
T ss_pred CCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCC---CCeEeecC--------CceEEEeCCCCCcCCCcc
Confidence 4567999999999999999999999999999999999999987 99998754 237999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHH-HHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM-KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|.+.+.-+.. ..+++..++........-......+... ......++..+..++.++..||+++. ++.+++
T Consensus 83 v~~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~--- 153 (530)
T COG0488 83 VLDYVIEGFG-----ELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSS--- 153 (530)
T ss_pred HHHHHHhhhH-----HHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhh---
Confidence 9999976533 2222332222221110000001111111 12224456777889999999999988 899988
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
||||||.||++|++|+.+|++|+|||||++||..+..++.+.|++. .+ |+| .+.|.....-+.|++|+-++.|
T Consensus 154 --LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tvi-iVSHDR~FLd~V~t~I~~ld~g 226 (530)
T COG0488 154 --LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVI-VVSHDRYFLDNVATHILELDRG 226 (530)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEE-EEeCCHHHHHHHhhheEEecCC
Confidence 9999999999999999999999999999999999999999999864 24 444 4567787888999999999999
Q ss_pred eE-EEecChhHHHH
Q 000615 421 QI-VYQGPRDNVLE 433 (1389)
Q Consensus 421 ~i-v~~G~~~~~~~ 433 (1389)
++ .|.|+++...+
T Consensus 227 ~l~~y~Gny~~~~~ 240 (530)
T COG0488 227 KLTPYKGNYSSYLE 240 (530)
T ss_pred ceeEecCCHHHHHH
Confidence 76 57788876654
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-50 Score=465.15 Aligned_cols=457 Identities=23% Similarity=0.315 Sum_probs=354.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC----ceEEEecCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHG 258 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~~~ 258 (1389)
...+++|||++|++||+.||+|.||||||||+++|.|.+.|+ +|+|.++|+++.-..|+ ..||+|.||..+++
T Consensus 16 ~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~---~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~ 92 (501)
T COG3845 16 GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPD---SGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVP 92 (501)
T ss_pred CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCC---cceEEECCEEeccCCHHHHHHcCCcEEeecccccc
Confidence 678999999999999999999999999999999999999998 99999999998766553 46999999999999
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
++||.||+..+..-...+ + +.+ ......++.+.+.+||+-..|..|++
T Consensus 93 ~lTV~ENiiLg~e~~~~~-~------~~~------------------------~~~~~~i~~l~~~yGl~vdp~~~V~d- 140 (501)
T COG3845 93 TLTVAENIILGLEPSKGG-L------IDR------------------------RQARARIKELSERYGLPVDPDAKVAD- 140 (501)
T ss_pred ccchhhhhhhcCcccccc-c------cCH------------------------HHHHHHHHHHHHHhCCCCCccceeec-
Confidence 999999999875432100 0 000 01123467788999999999999999
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
||=||||||.|-++|+.+|++|+|||||+-|-|....++.+.|+++++ .|+|+|+ ++|-..|+.+.||++.||.
T Consensus 141 ----LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~-ITHKL~Ev~~iaDrvTVLR 214 (501)
T COG3845 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIF-ITHKLKEVMAIADRVTVLR 214 (501)
T ss_pred ----CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEE-EeccHHHHHHhhCeeEEEe
Confidence 999999999999999999999999999999999999999999999987 4666655 4567789999999999999
Q ss_pred CCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcCccchhhhhhccCCCCCCCChhHHHHHHHhCccchhHHhhhc
Q 000615 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLR 498 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~ 498 (1389)
.|+++-.-++ .. + .+.+++++.
T Consensus 215 ~Gkvvgt~~~--~~--------------~---------------------------~t~~ela~l--------------- 236 (501)
T COG3845 215 RGKVVGTVDP--VA--------------E---------------------------TTEEELAEL--------------- 236 (501)
T ss_pred CCeEEeeecC--CC--------------C---------------------------CCHHHHHHH---------------
Confidence 9998643221 00 0 000000000
Q ss_pred CCCCcccCCCCccccCcccCCHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCcchhHH
Q 000615 499 VPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFG 578 (1389)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~l~~~r~~~~~~~~~~~~~i~ali~~tvf~~~~~~~~~~~~~~~~~g 578 (1389)
T Consensus 237 -------------------------------------------------------------------------------- 236 (501)
T COG3845 237 -------------------------------------------------------------------------------- 236 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCcccchhhHHHHHHHHHhcHHHHHHHHHHHHHhhccCCcchHHHHHHH
Q 000615 579 ALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQ 658 (1389)
Q Consensus 579 ~lff~ll~~~~~~~~~~~~~~~~~~vf~k~r~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~ 658 (1389)
|+|
T Consensus 237 ------------------------------------------------------------------MvG----------- 239 (501)
T COG3845 237 ------------------------------------------------------------------MVG----------- 239 (501)
T ss_pred ------------------------------------------------------------------hcC-----------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhccccCCchhhHHHHHHHcHHHHHHHHHHHHHhcCC
Q 000615 659 FLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGG 738 (1389)
Q Consensus 659 ~l~~~~~~~~~~~l~~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~y~~~al~~nef~~~ 738 (1389)
T Consensus 240 -------------------------------------------------------------------------------- 239 (501)
T COG3845 240 -------------------------------------------------------------------------------- 239 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCCCCCcccccccccccccCccccCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeccchhhhccC
Q 000615 739 RWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASG 818 (1389)
Q Consensus 739 ~~~~~~~~~~~~~~~~G~~~l~~~~~~~~~~~~w~~~~~l~~~~~~f~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 818 (1389)
..+.
T Consensus 240 -----------------~~v~----------------------------------------------------------- 243 (501)
T COG3845 240 -----------------REVV----------------------------------------------------------- 243 (501)
T ss_pred -----------------Cccc-----------------------------------------------------------
Confidence 0000
Q ss_pred cccchhhhhhcccccccccccccccCccccccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEE
Q 000615 819 HEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTAL 898 (1389)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al 898 (1389)
..... . .... .+..++++|++...+ .....+++|||++++||++||
T Consensus 244 -------~~~~~-------~--~~~p------g~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGI 289 (501)
T COG3845 244 -------LRVVK-------P--PSTP------GEVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGI 289 (501)
T ss_pred -------ccccc-------C--CCCC------CCeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEE
Confidence 00000 0 0000 022456666653221 124589999999999999999
Q ss_pred eccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC----Chhh-hhheeeEeccCCC---CCCCCCHHHHHHHHHHhhc-
Q 000615 899 MGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK----NQET-FARVSGYCEQNDI---HSPYVTVYESLLYSAWLRL- 969 (1389)
Q Consensus 899 ~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~----~~~~-~~~~~gyv~Q~~~---~~~~lTv~E~l~f~~~lr~- 969 (1389)
.|..|-|-+.|+.+|+|..+. .+|+|.++|.+. +... .+..++|||.|.. +.+.+|+.||+.+...-+.
T Consensus 290 AGV~GNGQ~eL~eaisGlr~~--~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~ 367 (501)
T COG3845 290 AGVAGNGQSELVEAISGLRKP--ASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKP 367 (501)
T ss_pred EecCCCCHHHHHHHHhCCCcc--CCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccc
Confidence 999999999999999997542 249999999985 2222 2346899998763 5688999999987653211
Q ss_pred ---CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHH
Q 000615 970 ---SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046 (1389)
Q Consensus 970 ---~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~ 1046 (1389)
..-.......+...++++.++.....-. ...+.||||++||+-+||+|.++|++|+..+||-|||..+.+.|.
T Consensus 368 ~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~----~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~ 443 (501)
T COG3845 368 FSRGGFLDRRAIRKFARELIEEFDVRAPSPD----APARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIH 443 (501)
T ss_pred cccccccCHHHHHHHHHHHHHHcCccCCCCC----cchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHH
Confidence 1124456677888999999988632221 124689999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1047 RTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1047 ~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+.|.+.++.|+.|++++-+++ |+++.+|++.+|. +|+++...+..
T Consensus 444 ~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi~-~Gri~~~~~~~ 488 (501)
T COG3845 444 ERLLELRDAGKAVLLISEDLD-EILELSDRIAVIY-EGRIVGIVPPE 488 (501)
T ss_pred HHHHHHHhcCCEEEEEehhHH-HHHHhhheeeeee-CCceecccccc
Confidence 999999999999999999998 8999999999998 48998777664
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=373.21 Aligned_cols=206 Identities=25% Similarity=0.370 Sum_probs=183.0
Q ss_pred ccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC----hhhhhheeeEeccCCCC
Q 000615 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN----QETFARVSGYCEQNDIH 951 (1389)
Q Consensus 876 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~----~~~~~~~~gyv~Q~~~~ 951 (1389)
.++..++|+|||++|++||+++|+|||||||||||++|.|... +.+|+|.++|.+.. ...+|+.+|+|+|+..+
T Consensus 11 ~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~--~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnL 88 (240)
T COG1126 11 SFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE--PDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNL 88 (240)
T ss_pred EeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC--CCCceEEECCEeccchhhHHHHHHhcCeecccccc
Confidence 3456789999999999999999999999999999999999866 34899999996542 34578899999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 952 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
||++||.||+.++-..- ...++++.++...++|+.+||.+.+|.. +..|||||||||+|||||+.+|+++++|
T Consensus 89 FPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~y-----P~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 89 FPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred cccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhC-----ccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 99999999999875432 2345677778899999999999999988 4589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||||+|||+...++.+.+++++++|.|.||+||+... ..+.+||++.|+ +|+++..|++
T Consensus 162 EPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~F-Ar~VadrviFmd-~G~iie~g~p 220 (240)
T COG1126 162 EPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGF-AREVADRVIFMD-QGKIIEEGPP 220 (240)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHH-HHHhhheEEEee-CCEEEEecCH
Confidence 9999999999999999999999999999999999764 667889999998 5889988875
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=367.07 Aligned_cols=222 Identities=26% Similarity=0.407 Sum_probs=187.4
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC----CcCceEEEecCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----VPQRTCAYISQHDLHH 257 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----~~~~~~~yv~Q~d~~~ 257 (1389)
...++|+|||++|++||+++|+|||||||||||++|.|+.+++ +|+|.++|.++... ..++.+|+|+|+..+|
T Consensus 13 g~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLF 89 (240)
T COG1126 13 GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF 89 (240)
T ss_pred CCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECCEeccchhhHHHHHHhcCeeccccccc
Confidence 3567999999999999999999999999999999999999888 99999999866422 2367899999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
|++||.||+..+...- ..+++ .+++..+...|+.+||.+.+|...+.
T Consensus 90 PHlTvleNv~lap~~v---------~~~~k------------------------~eA~~~A~~lL~~VGL~~ka~~yP~q 136 (240)
T COG1126 90 PHLTVLENVTLAPVKV---------KKLSK------------------------AEAREKALELLEKVGLADKADAYPAQ 136 (240)
T ss_pred ccchHHHHHHhhhHHH---------cCCCH------------------------HHHHHHHHHHHHHcCchhhhhhCccc
Confidence 9999999998864310 00111 12233456789999999999998876
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+|||||+.+|+++++|||||+|||....++.+.++++++. |.|+++.+| ....+.+.+|||+.|
T Consensus 137 -----LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~e-GmTMivVTH-EM~FAr~VadrviFm 209 (240)
T COG1126 137 -----LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMIIVTH-EMGFAREVADRVIFM 209 (240)
T ss_pred -----cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHc-CCeEEEEec-hhHHHHHhhheEEEe
Confidence 9999999999999999999999999999999999999999999999984 678887765 456888999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 000615 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~ 454 (1389)
++|+++.+|+++++ |..|.+....+|+..
T Consensus 210 d~G~iie~g~p~~~--------f~~p~~~R~~~FL~~ 238 (240)
T COG1126 210 DQGKIIEEGPPEEF--------FDNPKSERTRQFLSK 238 (240)
T ss_pred eCCEEEEecCHHHH--------hcCCCCHHHHHHHHh
Confidence 99999999999876 345666666667654
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=397.78 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=153.6
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..+.+.|+++.++. +..++++++|-|.+++.+|++|||||||||||+++.|...+ ..|.+.-.-+
T Consensus 388 pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p--~~G~vs~~~H- 452 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP--TIGMVSRHSH- 452 (614)
T ss_pred CeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccc--cccccccccc-
Confidence 35678888775431 22689999999999999999999999999999999997653 4566543221
Q ss_pred CChhhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 933 KNQETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 933 ~~~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
-++++..|+. .+.-..++-|+++=.. .+ +.+.+.+..++..+||..-.+.. ..+.||+|
T Consensus 453 -------~~~~~y~Qh~~e~ldl~~s~le~~~~~~-----~~---~~~~e~~r~ilgrfgLtgd~q~~----p~~~LS~G 513 (614)
T KOG0927|consen 453 -------NKLPRYNQHLAEQLDLDKSSLEFMMPKF-----PD---EKELEEMRSILGRFGLTGDAQVV----PMSQLSDG 513 (614)
T ss_pred -------ccchhhhhhhHhhcCcchhHHHHHHHhc-----cc---cchHHHHHHHHHHhCCCcccccc----chhhcccc
Confidence 1234444432 2223456666653211 11 23445688999999998443332 15689999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||+||..|+.++..|.||+|||||+|||..+...+.++|.+. ..+||+++||.. -+-+.++++.+..+++...+.|
T Consensus 514 qr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G 589 (614)
T KOG0927|consen 514 QRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDG 589 (614)
T ss_pred cchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCc
Confidence 999999999999999999999999999999999999999876 468999999976 4778889999999888888888
Q ss_pred CC
Q 000615 1091 PL 1092 (1389)
Q Consensus 1091 ~~ 1092 (1389)
..
T Consensus 590 ~i 591 (614)
T KOG0927|consen 590 DI 591 (614)
T ss_pred cH
Confidence 75
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=389.08 Aligned_cols=202 Identities=32% Similarity=0.473 Sum_probs=182.0
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
++.+|+||||+|++||++||+|||||||||||++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p--~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT 94 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP--TSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELT 94 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEEcCEeCccCHHHHHhheEEEccCCCCCcccc
Confidence 47899999999999999999999999999999999998764 58999999987654 467788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCC
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1036 (1389)
|+|+|.|.+.++.+.. +..+++++++++.++|.+..+.. +++||+||||||+||+||+++|+||||||||+|
T Consensus 95 ~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~-----~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~G 166 (293)
T COG1131 95 VRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKK-----VRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166 (293)
T ss_pred HHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcc-----hhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcC
Confidence 9999999999986543 44556799999999999855554 458999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCC-CEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1037 LDARAAAIVMRTVRNTVDTG-RTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g-~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||.++..+.+.|++++++| +||+++||+++ ++...||++++|. +|++++.|+.
T Consensus 167 LDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~-~G~~~~~g~~ 221 (293)
T COG1131 167 LDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILN-DGKIIAEGTP 221 (293)
T ss_pred CCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEe-CCEEEEeCCH
Confidence 99999999999999999887 89999999987 7888899999998 5899999975
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=370.16 Aligned_cols=203 Identities=27% Similarity=0.353 Sum_probs=182.8
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHS 952 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~ 952 (1389)
...+|+|||++|++||++||+|.||||||||++++.+... +.+|+|.++|.++.. ..+|+.+|+++|+..++
T Consensus 18 ~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~--PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 18 TVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER--PTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred ceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 4579999999999999999999999999999999999766 358999999976432 45678899999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeC
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1032 (1389)
...||+||+.|...+.. .++++++++|.++++.+||.+.++.. +.+|||||||||+|||||+.+|+||++||
T Consensus 96 ssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~y-----P~qLSGGQKQRVaIARALa~~P~iLL~DE 167 (339)
T COG1135 96 SSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRY-----PAQLSGGQKQRVAIARALANNPKILLCDE 167 (339)
T ss_pred ccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccC-----chhcCcchhhHHHHHHHHhcCCCEEEecC
Confidence 99999999999887763 56788899999999999999988887 45899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1033 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
|||+|||++...|.++|+++.++ |.||+++||+++ -+.+.||++.+|. .|++++.|+..
T Consensus 168 aTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~-~G~lvE~G~v~ 227 (339)
T COG1135 168 ATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLD-QGRLVEEGTVS 227 (339)
T ss_pred ccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEee-CCEEEEeccHH
Confidence 99999999999999999999654 999999999976 3677899999998 58999999864
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=356.97 Aligned_cols=231 Identities=26% Similarity=0.368 Sum_probs=197.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.+++++++.. .+.+.||+|||++|++||+++||||||+||||||++|.|..++ .+|+|.++|.++
T Consensus 8 ~I~vr~v~~~-------------fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P--~~GeI~i~G~~i 72 (263)
T COG1127 8 LIEVRGVTKS-------------FGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP--DKGEILIDGEDI 72 (263)
T ss_pred eEEEeeeeee-------------cCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC--CCCeEEEcCcch
Confidence 4677776643 4567899999999999999999999999999999999998764 489999999875
Q ss_pred Ch------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCC
Q 000615 934 NQ------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSG 1006 (1389)
Q Consensus 934 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~ 1006 (1389)
.+ ...++++|+++|+-.+|..+||+||+.|.. |.....+++..++.+..-|+.+||... .+.. ++.
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafpl--re~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPL--REHTKLPESLIRELVLMKLELVGLRGAAADLY-----PSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheeh--HhhccCCHHHHHHHHHHHHHhcCCChhhhhhC-----chh
Confidence 32 246678999999999999999999999864 444556777888888899999999877 5555 568
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
||||||||++||||++.+|+|||+||||+||||.++..+-++|+++.++ |.|++++|||.+ +++..+|++++|.+ |+
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~-gk 223 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLAD-GK 223 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeC-CE
Confidence 9999999999999999999999999999999999999999999999876 899999999987 69999999999985 89
Q ss_pred EEEecCCCcc----hhHHHHHHHhCCC
Q 000615 1086 VIYAGPLGHE----SHKLIEYFEAVPG 1108 (1389)
Q Consensus 1086 ~~~~g~~~~~----~~~~~~~f~~~~~ 1108 (1389)
++..|++++. ...+.+||....+
T Consensus 224 v~~~Gt~~el~~sd~P~v~qf~~G~~~ 250 (263)
T COG1127 224 VIAEGTPEELLASDDPWVRQFFNGIRD 250 (263)
T ss_pred EEEeCCHHHHHhCCCHHHHHHhcCCCC
Confidence 9999997542 2236677776543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=366.23 Aligned_cols=217 Identities=29% Similarity=0.443 Sum_probs=184.0
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ...+|+|||+++++|++++|+||||||||||+|+|.|... +.+|+|.++|.+.
T Consensus 4 ~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~--p~~G~i~~~g~~~ 68 (254)
T COG1121 4 MIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK--PSSGEIKIFGKPV 68 (254)
T ss_pred EEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc--CCcceEEEccccc
Confidence 478888887653 2259999999999999999999999999999999999665 3589999999876
Q ss_pred ChhhhhheeeEeccCCCC--CCCCCHHHHHHHHHHhhcC--CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQETFARVSGYCEQNDIH--SPYVTVYESLLYSAWLRLS--SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~--~~~lTv~E~l~f~~~lr~~--~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
....-+..+|||||...+ ...+||+|-+..+..-+.+ .... ++.++.++++|+.+|+.+++|+.+| .|||
T Consensus 69 ~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 69 RKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred cccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 554435679999996532 2347999999886433321 1122 3336779999999999999999976 6999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||+|||.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||++ .+.+.||+++.|+ +++++.
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln--~~~~~~ 219 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN--RHLIAS 219 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc--CeeEec
Confidence 9999999999999999999999999999999999999999999988999999999998 5889999999996 589999
Q ss_pred cCCCc
Q 000615 1090 GPLGH 1094 (1389)
Q Consensus 1090 g~~~~ 1094 (1389)
|++.+
T Consensus 220 G~~~~ 224 (254)
T COG1121 220 GPPEE 224 (254)
T ss_pred cChhh
Confidence 99854
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=384.71 Aligned_cols=217 Identities=29% Similarity=0.407 Sum_probs=193.6
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC-ceEEEecCCCCCCCCCCHHH
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-RTCAYISQHDLHHGEMTVRE 264 (1389)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~-~~~~yv~Q~d~~~~~lTV~E 264 (1389)
+|+|+|++|++||+++|+|||||||||||++|||+.+|+ +|+|.++|.++++..|+ |.+|+|+|+..++|+|||+|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~---~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~ 94 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPT---SGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYE 94 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHH
Confidence 899999999999999999999999999999999999998 99999999999998774 89999999999999999999
Q ss_pred HHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCC
Q 000615 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1389)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLS 344 (1389)
|+.|+.+.++... .+.+.+++++.+.|+|++..|+.... ||
T Consensus 95 Niaf~Lk~~~~~k----------------------------------~ei~~rV~eva~~L~l~~lL~r~P~~-----LS 135 (338)
T COG3839 95 NIAFGLKLRGVPK----------------------------------AEIDKRVKEVAKLLGLEHLLNRKPLQ-----LS 135 (338)
T ss_pred HhhhhhhhCCCch----------------------------------HHHHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 9999988765321 11234577889999999999998866 99
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEE
Q 000615 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1389)
Q Consensus 345 GGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~ 424 (1389)
|||||||++||||+.+|++++||||+|.||+..+.++...++++.+..+.|+|..+ |...|+..++|+|++|++|++..
T Consensus 136 GGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVT-HDq~EAmtladri~Vm~~G~i~Q 214 (338)
T COG3839 136 GGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVT-HDQVEAMTLADRIVVMNDGRIQQ 214 (338)
T ss_pred hhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEc-CCHHHHHhhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999999999999887777777665 45669999999999999999999
Q ss_pred ecChhHHHHHHHhcCCCCCCCCChHHHHH
Q 000615 425 QGPRDNVLEFFEHMGFKCPERKGVADFLQ 453 (1389)
Q Consensus 425 ~G~~~~~~~~F~~lG~~~p~~~~~adfl~ 453 (1389)
.|++.|+. ..|.+.-+|.|+-
T Consensus 215 ~g~p~ely--------~~P~n~fVA~FiG 235 (338)
T COG3839 215 VGTPLELY--------ERPANLFVAGFIG 235 (338)
T ss_pred cCChHHHh--------hCccchhhhhhcC
Confidence 99999984 4577777777753
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=361.37 Aligned_cols=192 Identities=26% Similarity=0.404 Sum_probs=172.3
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHH
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
...+|+|||++|++||+++|+||||||||||||+|+|..++ .+|+|.++|.+.. .....+|||+|++.++|.+||+
T Consensus 15 ~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p--~~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 15 GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP--TSGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 36799999999999999999999999999999999998763 4899999998863 2345689999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.|+...+. .+.+++.+++++.|+.+||.++.|.. +..|||||||||+|||||+.+|+||+||||+++||
T Consensus 91 ~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 91 DNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred hhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 99999877653 34556667899999999999999987 56899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1039 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
+.++..+++.+.++.+ .++|||++|||.+ |...+.|||++|.++
T Consensus 163 alTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~ 207 (248)
T COG1116 163 ALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence 9999999999999864 4899999999987 788899999999863
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=355.68 Aligned_cols=205 Identities=25% Similarity=0.357 Sum_probs=183.3
Q ss_pred cccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhhheeeEeccCCCCCC
Q 000615 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 877 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~ 953 (1389)
++++.+++|+|++|++||+++++|||||||||+|++|.+... +.+|+|.+||.++.. ..+||.+|||-|+-.+||
T Consensus 11 y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie--pt~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFP 88 (309)
T COG1125 11 YGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE--PTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88 (309)
T ss_pred cCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC--CCCceEEECCeecccCCHHHHHHhhhhhhhhcccCC
Confidence 345789999999999999999999999999999999999776 358999999998653 568899999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
++||.||+.+--.+. .-++++.+++++|+|+++||.+ +.++. +..|||||+|||.+||||+++|+||+||
T Consensus 89 h~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 89 HLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADRY-----PHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred CccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 999999998766553 3456788889999999999975 67776 5689999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
||+++|||-++..+++.++++.++ |+|||++|||.+ |.+.+.|++.+|+ +|+++-.+++.
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~-~G~i~Q~~~P~ 221 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMD-AGEIVQYDTPD 221 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEec-CCeEEEeCCHH
Confidence 999999999999999999999755 999999999987 7899999999998 58888877753
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=367.53 Aligned_cols=218 Identities=30% Similarity=0.420 Sum_probs=186.8
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++.+|+++.+ +++.+|+|+||++++||+++|+|||||||||||++|+|...+ .+|+|.++|.++.
T Consensus 3 L~~~~ls~~y-------------~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p--~~G~V~l~g~~i~ 67 (258)
T COG1120 3 LEVENLSFGY-------------GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP--KSGEVLLDGKDIA 67 (258)
T ss_pred eEEEEEEEEE-------------CCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC--CCCEEEECCCchh
Confidence 5667776654 457899999999999999999999999999999999997653 4799999998764
Q ss_pred ---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCC-CcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 ---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSD-VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~-~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
...+++.++||||.....+.+||+|-+.++..-+.... ...++..+.++++|+.+++.+++++.+ ..||||
T Consensus 68 ~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~-----~~LSGG 142 (258)
T COG1120 68 SLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPV-----DELSGG 142 (258)
T ss_pred hcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcc-----cccChh
Confidence 45678899999999988889999999998754322211 122333446999999999999999985 579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||+.|||||+.+|+||+||||||.||...+.+++++++++++ +|.|||+++||++ .....||++++|+ +|+++..
T Consensus 143 erQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk-~G~i~a~ 220 (258)
T COG1120 143 ERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK-DGKIVAQ 220 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE-CCeEEee
Confidence 99999999999999999999999999999999999999999984 5999999999998 4778999999998 5899999
Q ss_pred cCCCc
Q 000615 1090 GPLGH 1094 (1389)
Q Consensus 1090 g~~~~ 1094 (1389)
|++.+
T Consensus 221 G~p~e 225 (258)
T COG1120 221 GTPEE 225 (258)
T ss_pred cCcch
Confidence 98753
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=364.69 Aligned_cols=225 Identities=27% Similarity=0.366 Sum_probs=195.6
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDL 255 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 255 (1389)
...++|+|||++|++|++.+|+|+||||||||++++.++-.|+ +|+|.++|+++..... ++.+|+++|+..
T Consensus 17 ~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~Pt---sG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFn 93 (339)
T COG1135 17 GTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPT---SGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFN 93 (339)
T ss_pred CceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCC---CceEEEcCEecccCChHHHHHHHhhccEEecccc
Confidence 3467999999999999999999999999999999999999998 9999999998876542 478999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
++...||.||++|..+..+.+ + .+.+.++.+.|+.+||++.+|...
T Consensus 94 LLssrTV~~NvA~PLeiag~~----------k------------------------~ei~~RV~elLelVgL~dk~~~yP 139 (339)
T COG1135 94 LLSSRTVFENVAFPLELAGVP----------K------------------------AEIKQRVAELLELVGLSDKADRYP 139 (339)
T ss_pred ccccchHHhhhhhhHhhcCCC----------H------------------------HHHHHHHHHHHHHcCChhhhccCc
Confidence 999999999999987665532 1 112345778999999999999988
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
.+ |||||||||+|||||+.+|+||+.|||||+|||.|+..|.+.|+++.+.+|.|+++..|+. .-+-+.||+|.
T Consensus 140 ~q-----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVa 213 (339)
T COG1135 140 AQ-----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVA 213 (339)
T ss_pred hh-----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhhe
Confidence 77 9999999999999999999999999999999999999999999999999998888877664 47778999999
Q ss_pred EEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhhcC
Q 000615 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTS 457 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v~s 457 (1389)
||++|+++++|+..++ |..|.+.-..+|+.+...
T Consensus 214 vm~~G~lvE~G~v~~v--------F~~Pk~~~t~~fi~~~~~ 247 (339)
T COG1135 214 VLDQGRLVEEGTVSEV--------FANPKHAITQEFIGETLE 247 (339)
T ss_pred EeeCCEEEEeccHHHh--------hcCcchHHHHHHHHhhcc
Confidence 9999999999999987 344666666666665543
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=382.19 Aligned_cols=212 Identities=32% Similarity=0.474 Sum_probs=185.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC--CcCceEEEecCCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF--VPQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~--~~~~~~~yv~Q~d~~~~~l 260 (1389)
.+.+|+|||++|++|++++|+||||||||||+|+|+|.+.|+ +|+|.++|++.... ..++.+||++|++.+++.+
T Consensus 17 ~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~---~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~~~l 93 (293)
T COG1131 17 DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPEL 93 (293)
T ss_pred CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEEcCEeCccCHHHHHhheEEEccCCCCCccc
Confidence 578999999999999999999999999999999999999997 99999999988653 3357899999999999999
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+|||.|.+++.+.... .....++++++.+||++..++.+++
T Consensus 94 T~~e~l~~~~~l~~~~~~----------------------------------~~~~~~~~~l~~~~L~~~~~~~~~~--- 136 (293)
T COG1131 94 TVRENLEFFARLYGLSKE----------------------------------EAEERIEELLELFGLEDKANKKVRT--- 136 (293)
T ss_pred cHHHHHHHHHHHhCCChh----------------------------------HHHHHHHHHHHHcCCchhhCcchhh---
Confidence 999999999888764310 0122467899999999866666755
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
||+||||||+||.||+++|++|||||||+||||.++.++.+.|+++++..+.|++++.|++ .++..+||+|++|++|
T Consensus 137 --lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G 213 (293)
T COG1131 137 --LSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDG 213 (293)
T ss_pred --cCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999986546777776655 5899999999999999
Q ss_pred eEEEecChhHHHHHHHh
Q 000615 421 QIVYQGPRDNVLEFFEH 437 (1389)
Q Consensus 421 ~iv~~G~~~~~~~~F~~ 437 (1389)
++++.|+.+++...+..
T Consensus 214 ~~~~~g~~~~l~~~~~~ 230 (293)
T COG1131 214 KIIAEGTPEELKEKFGG 230 (293)
T ss_pred EEEEeCCHHHHHHhhcc
Confidence 99999999998765543
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=398.94 Aligned_cols=213 Identities=24% Similarity=0.432 Sum_probs=184.0
Q ss_pred CCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCC
Q 000615 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (1389)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 255 (1389)
+.+++.+||||+|++|+|||.||||||||+||||+.++|..+|+|+ +|+|.+||+|+.+.++ ++.+|+|.|+|.
T Consensus 476 P~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~~i~~~~~~~lr~~Ig~V~QEPv 552 (716)
T KOG0058|consen 476 PTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGVPISDINHKYLRRKIGLVGQEPV 552 (716)
T ss_pred CCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCeehhhcCHHHHHHHeeeeeccce
Confidence 4456778999999999999999999999999999999999999998 9999999999998875 588999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
+|. -||+|||.|+.. ..+.|+.+.++..++.+ +. +.++++.+||.|
T Consensus 553 LFs-~sI~eNI~YG~~-------------------------~~t~e~i~~AAk~ANah-----~F---I~~~p~gY~T~V 598 (716)
T KOG0058|consen 553 LFS-GSIRENIAYGLD-------------------------NATDEEIEAAAKMANAH-----EF---ITNFPDGYNTVV 598 (716)
T ss_pred eec-ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhChH-----HH---HHhCcccccccc
Confidence 996 599999999743 22334455565555443 33 446999999999
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
|+ .+..||||||||++|||||+++|+||||||.||+||+.+...+.+.|.+..+ ++||++.-|. .++.+.+|+|+
T Consensus 599 GE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHR--LSTV~~Ad~Iv 673 (716)
T KOG0058|consen 599 GE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHR--LSTVRHADQIV 673 (716)
T ss_pred CC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehh--hhHhhhccEEE
Confidence 97 3345999999999999999999999999999999999999999999998876 4777776553 47899999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 000615 416 LLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1389)
|+++|++++.|+++|+++
T Consensus 674 vi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 674 VIDKGRVVEMGTHDELLS 691 (716)
T ss_pred EEcCCeEEecccHHHHhh
Confidence 999999999999999975
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=382.97 Aligned_cols=223 Identities=29% Similarity=0.420 Sum_probs=197.6
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lT 261 (1389)
...+|+|+|+.|++||+++|+|||||||||||++|||+..|+ +|+|.++|++++...+ +|.+++|+|+..+||+||
T Consensus 17 ~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~---~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHlt 93 (352)
T COG3842 17 DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPS---SGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMT 93 (352)
T ss_pred CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCChhhcccceeecCcccCCCCc
Confidence 567999999999999999999999999999999999999998 9999999999998876 588999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.|+.+.+... +++ +...+++++++.++|++.+++.+.+
T Consensus 94 V~~NVafGLk~~~~~-------------------~~~--------------~i~~rv~e~L~lV~L~~~~~R~p~q---- 136 (352)
T COG3842 94 VEENVAFGLKVRKKL-------------------KKA--------------EIKARVEEALELVGLEGFADRKPHQ---- 136 (352)
T ss_pred HHHHhhhhhhhcCCC-------------------CHH--------------HHHHHHHHHHHHcCchhhhhhChhh----
Confidence 999999997743211 001 1233578899999999999888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||++||||+.+|++|+||||.|+||..-+.++...|+++.+..|.|.|..+ |+..|.+.++|+|++|++|+
T Consensus 137 -LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VT-HDqeEAl~msDrI~Vm~~G~ 214 (352)
T COG3842 137 -LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVT-HDQEEALAMSDRIAVMNDGR 214 (352)
T ss_pred -hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEE-CCHHHHhhhccceEEccCCc
Confidence 9999999999999999999999999999999999999999999999988887777665 55679999999999999999
Q ss_pred EEEecChhHHHHHHHhcCCCCCCCCChHHHHHhh
Q 000615 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (1389)
Q Consensus 422 iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v 455 (1389)
|...|+++|+ |..|...-+|+|+-+.
T Consensus 215 I~Q~gtP~ei--------Y~~P~~~fVA~FiG~~ 240 (352)
T COG3842 215 IEQVGTPEEI--------YERPATRFVADFIGES 240 (352)
T ss_pred eeecCCHHHH--------hhCcchHHHHHHhCcc
Confidence 9999999998 4568888888888653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=342.32 Aligned_cols=201 Identities=30% Similarity=0.407 Sum_probs=183.6
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC--hhhhhheeeEeccCCCCCCCCCHH
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN--QETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~--~~~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
++++||||+++.||++||+|+|||||||+|++|++...+ .+|.|.++|.+.. +...++.+|.++.+-.++..||++
T Consensus 16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P--~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~r 93 (245)
T COG4555 16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP--DSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTAR 93 (245)
T ss_pred hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC--CCceEEEeecccccChHHHhhhcceecCCcChhhhhhHH
Confidence 499999999999999999999999999999999998764 4899999999853 356788999999888899999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
|||.|.+.+. +....+.+++++++.+.++|.++.|+.+| ++|.|+||||+|||||+++|++++|||||||||
T Consensus 94 Enl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLD 165 (245)
T COG4555 94 ENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQKVAIARALVHDPSILVLDEPTSGLD 165 (245)
T ss_pred HHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCcc
Confidence 9999999886 34556778889999999999999999976 799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
..+.+.+.+.++++.+.|++||++||.++ |+...||+++++.+ |++++.|++.
T Consensus 166 i~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~-Gevv~~gs~~ 218 (245)
T COG4555 166 IRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHK-GEVVLEGSIE 218 (245)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEec-CcEEEcCCHH
Confidence 99999999999999988999999999976 77779999999985 8999999864
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=349.34 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=184.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1389)
.+++++|+|++|++||+++++|||||||||+||+|.++++|+ +|+|.+||+++.+... ++.+|||-|+-.+||+
T Consensus 13 ~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept---~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh 89 (309)
T COG1125 13 NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPT---SGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPH 89 (309)
T ss_pred CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCC---CceEEECCeecccCCHHHHHHhhhhhhhhcccCCC
Confidence 567999999999999999999999999999999999999998 9999999999987654 6899999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc--cccccccC
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGD 337 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~--~~dt~vg~ 337 (1389)
+||.|||.+-..+.+... ++.+.+++++|+.+||+. ..|+..-+
T Consensus 90 ~Tv~eNIa~VP~L~~w~k----------------------------------~~i~~r~~ELl~lvgL~p~~~~~RyP~e 135 (309)
T COG1125 90 LTVAENIATVPKLLGWDK----------------------------------ERIKKRADELLDLVGLDPSEYADRYPHE 135 (309)
T ss_pred ccHHHHHHhhhhhcCCCH----------------------------------HHHHHHHHHHHHHhCCCHHHHhhcCchh
Confidence 999999998665544221 112345788999999974 66776655
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||+|||.+||||+.+|+|++||||+++|||-++.++.+.++++.+..++|+|+.. |...|.+.++|+|++|
T Consensus 136 -----LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVT-HDidEA~kLadri~vm 209 (309)
T COG1125 136 -----LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVT-HDIDEALKLADRIAVM 209 (309)
T ss_pred -----cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEe-cCHHHHHhhhceEEEe
Confidence 9999999999999999999999999999999999999999999999988888877665 6678999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000615 418 SEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1389)
++|+++..+++++++.
T Consensus 210 ~~G~i~Q~~~P~~il~ 225 (309)
T COG1125 210 DAGEIVQYDTPDEILA 225 (309)
T ss_pred cCCeEEEeCCHHHHHh
Confidence 9999999999999974
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=365.13 Aligned_cols=211 Identities=29% Similarity=0.439 Sum_probs=183.3
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC---ceEEEecCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~ 259 (1389)
+++||+|+|+++++|++++|+||||||||||||+|+|.++|. +|+|.++|+++.+...+ +.+|||||.....+.
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~---~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~ 90 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK---SGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCC---CCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCC
Confidence 457999999999999999999999999999999999999987 99999999999877653 789999999988889
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+|-+.++..-.... ... + ..++...++..|+.+|+.+.+++.+.+
T Consensus 91 ~tV~d~V~~GR~p~~~~-----~~~-----------~--------------~~~D~~~v~~aL~~~~~~~la~r~~~~-- 138 (258)
T COG1120 91 LTVYELVLLGRYPHLGL-----FGR-----------P--------------SKEDEEIVEEALELLGLEHLADRPVDE-- 138 (258)
T ss_pred cEEeehHhhcCCccccc-----ccC-----------C--------------CHhHHHHHHHHHHHhCcHHHhcCcccc--
Confidence 99999999874321000 000 0 001122467789999999999999988
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||.|||||+.+|+||+||||||+||...+.++++.++++++..+.|+|+++|.+ ....++||++++|++
T Consensus 139 ---LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~ 214 (258)
T COG1120 139 ---LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKD 214 (258)
T ss_pred ---cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999987788888877655 588899999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|+++.+|++++++
T Consensus 215 G~i~a~G~p~evl 227 (258)
T COG1120 215 GKIVAQGTPEEVL 227 (258)
T ss_pred CeEEeecCcchhc
Confidence 9999999998875
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=347.98 Aligned_cols=221 Identities=29% Similarity=0.380 Sum_probs=185.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++-.++ +++++|+|||+.|++||++||+|+|||||||||++|.|... +.+|+|.++|.++
T Consensus 3 ~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d--~t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD--PTSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC--CCcceEEecccch
Confidence 467777764332 46789999999999999999999999999999999999655 4589999999754
Q ss_pred Ch------hhhhheeeEeccCCCCCCCCCHHHHHHHHHH-----hhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCC
Q 000615 934 NQ------ETFARVSGYCEQNDIHSPYVTVYESLLYSAW-----LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002 (1389)
Q Consensus 934 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~-----lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~ 1002 (1389)
.. ..+++.+||++|++.+.+.++|.||++.+.. ++.-.....++.+..+-++|+.+|+.+.+....
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra--- 145 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRA--- 145 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHh---
Confidence 32 3467889999999999999999999987642 221123333455567889999999998888774
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+.|||||+|||+|||+|+.+|+||+-|||+++|||.+++.||+.|+++.+ .|.|||++.||.++ ..+.|||++-|+
T Consensus 146 --~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdl-A~~Y~~Riigl~ 222 (258)
T COG3638 146 --STLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDL-AKKYADRIIGLK 222 (258)
T ss_pred --ccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHH-HHHHHhhheEec
Confidence 47999999999999999999999999999999999999999999999975 48999999999874 667899999997
Q ss_pred cCcEEEEecCCCcc
Q 000615 1082 RGGRVIYAGPLGHE 1095 (1389)
Q Consensus 1082 ~gG~~~~~g~~~~~ 1095 (1389)
.|+++|+||..+.
T Consensus 223 -~G~ivfDg~~~el 235 (258)
T COG3638 223 -AGRIVFDGPASEL 235 (258)
T ss_pred -CCcEEEeCChhhh
Confidence 5899999998653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=358.46 Aligned_cols=206 Identities=30% Similarity=0.469 Sum_probs=186.1
Q ss_pred ccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCc---cCCh-hhhhheeeEeccCCCCCC
Q 000615 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY---PKNQ-ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 878 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~---~~~~-~~~~~~~gyv~Q~~~~~~ 953 (1389)
+...+++|||+.|+.||++||+|||||||||||++|||..++ ..|.|.+||. +.++ ..-.|.+|||+|+..+++
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p--~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~ 90 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP--DAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFP 90 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC--CCceEEECCEeccchhccchhhcceeEEEechhhcc
Confidence 346789999999999999999999999999999999998774 4899999998 5544 334578999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
+|||.+|+.|+...+ ...+++.+.+.+++++|+.++|+++.++. +..|||||||||++||||+..|++|+||||
T Consensus 91 HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQrQRVALARALA~eP~vLLLDEP 164 (345)
T COG1118 91 HMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQRQRVALARALAVEPKVLLLDEP 164 (345)
T ss_pred cchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHHHHHHHHHHHhhcCCCeEeecCC
Confidence 999999999998777 34455677888999999999999999987 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
.++||+.-+..+.+.|+++.++ |.|+|++|||+. +..+.+|++++|++ |+|+..||+.
T Consensus 165 f~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~-G~Ieqvg~p~ 223 (345)
T COG1118 165 FGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQ-GRIEQVGPPD 223 (345)
T ss_pred chhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecC-CeeeeeCCHH
Confidence 9999999999999999999876 999999999986 89999999999985 8999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=357.42 Aligned_cols=224 Identities=29% Similarity=0.470 Sum_probs=189.0
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCe---eCCCCCc-CceEEEecCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH---ELNEFVP-QRTCAYISQHDLHH 257 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~---~~~~~~~-~~~~~yv~Q~d~~~ 257 (1389)
....+++|||+.|+.||+++++|||||||||||++|||+..|+ +|+|.+||. +.+.... .|.||||+|+..+|
T Consensus 13 ~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~---~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 13 GAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD---AGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred ccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCC---CceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 3456899999999999999999999999999999999999998 999999999 5555333 48899999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
++|||.+||.|+.+++... |+ ..+.+.++++.|+.+.|++..|...-+
T Consensus 90 ~HmtVa~NIAFGl~~~~~~-------------------p~-------------~~~~r~rv~elL~lvqL~~la~ryP~Q 137 (345)
T COG1118 90 PHMTVADNIAFGLKVRKER-------------------PS-------------EAEIRARVEELLRLVQLEGLADRYPAQ 137 (345)
T ss_pred ccchHHhhhhhcccccccC-------------------CC-------------hhhHHHHHHHHHHHhcccchhhcCchh
Confidence 9999999999998765210 10 011233567789999999888887755
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||++||||+..|++|+||||+++||+..+.++.+.|+++.+..+.|+++.. |...|++++||+|++|
T Consensus 138 -----LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVT-HD~eea~~ladrvvvl 211 (345)
T COG1118 138 -----LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVT-HDQEEALELADRVVVL 211 (345)
T ss_pred -----cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEe-CCHHHHHhhcceEEEe
Confidence 9999999999999999999999999999999999999999999999887777777665 5567999999999999
Q ss_pred cCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHh
Q 000615 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE 454 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~ 454 (1389)
++|+|...||++|+.+ .|...-+..|+-+
T Consensus 212 ~~G~Ieqvg~p~ev~~--------~P~s~fV~~f~G~ 240 (345)
T COG1118 212 NQGRIEQVGPPDEVYD--------HPASRFVARFLGE 240 (345)
T ss_pred cCCeeeeeCCHHHHhc--------CCCccceeccccc
Confidence 9999999999999843 3555555555433
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=354.60 Aligned_cols=207 Identities=28% Similarity=0.442 Sum_probs=175.6
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCC---CCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH---DLHHGEMT 261 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~---d~~~~~lT 261 (1389)
++|+|||+++++|++++|+||||||||||+|+|.|.++|. +|+|.++|.+......+..+|||||. |+-|| +|
T Consensus 18 ~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~---~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~t 93 (254)
T COG1121 18 PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPS---SGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-IT 93 (254)
T ss_pred eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCC---cceEEEccccccccccCCeEEEcCcccccCCCCC-cC
Confidence 5999999999999999999999999999999999999987 99999999988776666789999996 44454 79
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+|.+..+..-+. ....... +++...+++.|+.+|+.+.+|..+|+
T Consensus 94 V~d~V~~g~~~~~-----g~~~~~~-------------------------~~d~~~v~~aL~~Vgm~~~~~r~i~~---- 139 (254)
T COG1121 94 VKDVVLLGRYGKK-----GWFRRLN-------------------------KKDKEKVDEALERVGMEDLRDRQIGE---- 139 (254)
T ss_pred HHHHHHccCcccc-----ccccccc-------------------------HHHHHHHHHHHHHcCchhhhCCcccc----
Confidence 9999988632111 0011111 11234578899999999999999998
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||+|||-|||||+.+|++|+|||||+|+|+.++..|.+.|+++.+. |+||+++. |....+.++||+|+.|+ ++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vt-HDL~~v~~~~D~vi~Ln-~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVT-HDLGLVMAYFDRVICLN-RH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEe-CCcHHhHhhCCEEEEEc-Ce
Confidence 9999999999999999999999999999999999999999999999987 77777665 55668999999999996 56
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
+++.|+++++.+
T Consensus 216 ~~~~G~~~~~~~ 227 (254)
T COG1121 216 LIASGPPEEVLT 227 (254)
T ss_pred eEeccChhhccC
Confidence 889999998753
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=350.53 Aligned_cols=193 Identities=30% Similarity=0.462 Sum_probs=167.4
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhh-heeeEeccCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFA-RVSGYCEQNDIHS 952 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~-~~~gyv~Q~~~~~ 952 (1389)
..+|++||++|++||++||||||||||||||++|.|...+ .+|.+.++|.+... ..+| +.+|||+|+..+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p--t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl 95 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP--TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL 95 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCC
Confidence 5799999999999999999999999999999999997664 57999999976532 2233 5699999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccccc-ccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND-SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~-~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
|.+||.||+.+...+.... ..+.++.++++++.+||.+..+ .. +..|||||||||+|||||+.+|+||+.|
T Consensus 96 ~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~-----p~eLSGGqqQRVAIARAL~~~P~iilAD 167 (226)
T COG1136 96 PDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKK-----PSELSGGQQQRVAIARALINNPKIILAD 167 (226)
T ss_pred CCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCC-----chhcCHHHHHHHHHHHHHhcCCCeEEee
Confidence 9999999999876554322 2255667899999999987666 44 4589999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
|||.+||+.+...|+++++++.++ |+|||++|||| ++...|||++.|.+ |+
T Consensus 168 EPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l~d-G~ 219 (226)
T COG1136 168 EPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD-GK 219 (226)
T ss_pred CccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEEeC-Ce
Confidence 999999999999999999999765 89999999996 57889999999986 55
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=336.89 Aligned_cols=217 Identities=24% Similarity=0.356 Sum_probs=185.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCC---CCCceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR---KTGGYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~---~~~g~~~G~i~i~g 930 (1389)
.++++|++.++ +.+++|+|||+.|++++++||||||||||||||++|.+. ..+-.++|+|.++|
T Consensus 7 ~~~~~~l~~yY-------------g~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 7 AIEVRDLNLYY-------------GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred eeEecceeEEE-------------CchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC
Confidence 46677777654 457899999999999999999999999999999999983 23446789999999
Q ss_pred ccCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCC
Q 000615 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGV 1004 (1389)
Q Consensus 931 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~ 1004 (1389)
.++. ...+|+.+|.|+|.|.-|| +|++||+.|+.++....+ ++.++.|++.|+...|++- .|++ ... .
T Consensus 74 ~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~---~~ldeiVe~sLk~AaLWdEVKDrL-~~s-a 147 (253)
T COG1117 74 KNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKD---KELDEIVESSLKKAALWDEVKDRL-HKS-A 147 (253)
T ss_pred eeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccch---HHHHHHHHHHHHHhHhHHHhHHHh-hCC-c
Confidence 8753 3468899999999999999 999999999988775433 6777889999999999764 4443 222 3
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
.+|||||+|||||||+|+.+|+||+||||||+|||.+...|-++|.++. +.-|||++||.+. ......|+...+.. |
T Consensus 148 ~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~-G 224 (253)
T COG1117 148 LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL-G 224 (253)
T ss_pred cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc-c
Confidence 4799999999999999999999999999999999999999999999997 4789999999876 57788899999985 8
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 225 ~LvE~g~T 232 (253)
T COG1117 225 ELVEFGPT 232 (253)
T ss_pred EEEEEcCH
Confidence 99999986
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=392.48 Aligned_cols=216 Identities=22% Similarity=0.367 Sum_probs=185.0
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++++|++..++ .+++.+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 927 ~~L~I~nLsK~y~-----------~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P--tsG~I~i~G~d 993 (2272)
T TIGR01257 927 PGVCVKNLVKIFE-----------PSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP--TSGTVLVGGKD 993 (2272)
T ss_pred ceEEEEeEEEEec-----------CCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC--CceEEEECCEE
Confidence 4678888776542 1235699999999999999999999999999999999998653 48999999987
Q ss_pred CCh--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 933 KNQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 933 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
+.. ...++.+|||+|++.+++.+||+|++.|.+.++. ...++.+++++++++.++|.+..+..+ +.||||
T Consensus 994 I~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGG 1065 (2272)
T TIGR01257 994 IETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGG 1065 (2272)
T ss_pred CcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 642 3356779999999999999999999999876643 223344567899999999998888774 479999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
|||||+||+||+.+|+||+|||||+|||+.+++.+++.|+++. +|+|||++||+++ ++...+|++++|.+ |++++.|
T Consensus 1066 qKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~-GkL~~~G 1142 (2272)
T TIGR01257 1066 MQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQ-GRLYCSG 1142 (2272)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 9999999999999999999999999999999999999999995 5999999999976 56678999999985 8999998
Q ss_pred CC
Q 000615 1091 PL 1092 (1389)
Q Consensus 1091 ~~ 1092 (1389)
+.
T Consensus 1143 s~ 1144 (2272)
T TIGR01257 1143 TP 1144 (2272)
T ss_pred CH
Confidence 75
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=348.14 Aligned_cols=192 Identities=25% Similarity=0.349 Sum_probs=170.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
.++|+|+|++|++||+++|+||||||||||||+|+|+.+|+ +|+|.++|.++. .+...++||+|++.++|.+||+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~---~G~V~~~g~~v~--~p~~~~~~vFQ~~~LlPW~Tv~ 90 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPT---SGEVLLDGRPVT--GPGPDIGYVFQEDALLPWLTVL 90 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCcccC--CCCCCEEEEeccCcccchhhHH
Confidence 57999999999999999999999999999999999999997 999999999884 3567899999999999999999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
||+.|+....+.. +.| ....++..|+.+||.+..|....+ |
T Consensus 91 ~NV~l~l~~~~~~----------~~e------------------------~~~~a~~~L~~VgL~~~~~~~P~q-----L 131 (248)
T COG1116 91 DNVALGLELRGKS----------KAE------------------------ARERAKELLELVGLAGFEDKYPHQ-----L 131 (248)
T ss_pred hhheehhhccccc----------hHh------------------------HHHHHHHHHHHcCCcchhhcCccc-----c
Confidence 9999987765421 111 112467789999999999988876 9
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+..+.|+++.+ |.-.|...++|+|++|+++
T Consensus 132 SGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVT-Hdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 132 SGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVT-HDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred ChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEe-CCHHHHHhhhCEEEEecCC
Confidence 999999999999999999999999999999999999999999999887777777665 5567999999999999984
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=370.74 Aligned_cols=201 Identities=28% Similarity=0.417 Sum_probs=183.4
Q ss_pred eeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCCCHHHH
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1389)
Q Consensus 882 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 960 (1389)
+|+|||++|++||.++|+|||||||||||++|||... +.+|+|.|+|.+.+. ...+|.+|+|+|+..++|+|||+||
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~--~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE--PTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHH
Confidence 9999999999999999999999999999999999876 358999999998765 3456889999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHH
Q 000615 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1389)
Q Consensus 961 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~ 1040 (1389)
+.|+.+++. .++++.+++|.++.+.++|.++.|+. +++|||||||||+|||||+++|++++||||.|+||+.
T Consensus 96 iaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~-----P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~ 167 (338)
T COG3839 96 IAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRK-----PLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167 (338)
T ss_pred hhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcC-----cccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHH
Confidence 999987763 45678888999999999999999998 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
.+..+...|+++.++ |.|+|.+|||. .|...++|++.+|. +|++...|++.+
T Consensus 168 lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~-~G~i~Q~g~p~e 220 (338)
T COG3839 168 LRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMN-DGRIQQVGTPLE 220 (338)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEe-CCeeeecCChHH
Confidence 999999999998755 89999999996 48889999999998 689999998743
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=340.74 Aligned_cols=210 Identities=25% Similarity=0.400 Sum_probs=180.2
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDL 255 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 255 (1389)
..+.|++|||+.|++||+++|+|||||||||||++|.|+++|+ +|+|.++|+++..... ++.+|+++|+-.
T Consensus 19 G~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~---~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 19 GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred CCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC---CCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4567999999999999999999999999999999999999998 9999999999876543 467999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccc-cccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~-~dt~ 334 (1389)
+|..+||+||+.|-.+-.. .+ |...+ +..+..-|+..||... +|..
T Consensus 96 LFssltV~eNVafplre~~---------~l----------p~~~i--------------~~lv~~KL~~VGL~~~~~~~~ 142 (263)
T COG1127 96 LFSSLTVFENVAFPLREHT---------KL----------PESLI--------------RELVLMKLELVGLRGAAADLY 142 (263)
T ss_pred cccccchhHhhheehHhhc---------cC----------CHHHH--------------HHHHHHHHHhcCCChhhhhhC
Confidence 9999999999998543211 01 11111 1234445788999866 7776
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
..+ ||||++||+++|||++.+|+++|+||||+||||.++..+.++++++.+..+.|+++..| ..++++..+|+|
T Consensus 143 PsE-----LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTH-Dl~s~~~i~Drv 216 (263)
T COG1127 143 PSE-----LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTH-DLDSLLTIADRV 216 (263)
T ss_pred chh-----hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEC-ChHHHHhhhceE
Confidence 666 99999999999999999999999999999999999999999999999988888887765 567999999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (1389)
++|.+|+|+..|+++++.+
T Consensus 217 ~~L~~gkv~~~Gt~~el~~ 235 (263)
T COG1127 217 AVLADGKVIAEGTPEELLA 235 (263)
T ss_pred EEEeCCEEEEeCCHHHHHh
Confidence 9999999999999999864
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=326.75 Aligned_cols=199 Identities=28% Similarity=0.385 Sum_probs=174.2
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+||||.|++||++-|+||||||||||||+|.+... +..|+|.++|+++.. .-+||.+|+|+||..+.+
T Consensus 15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~--pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~ 92 (223)
T COG2884 15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER--PTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLP 92 (223)
T ss_pred chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc--CCCceEEECCeecccccccccchhhheeeeEeeeccccc
Confidence 569999999999999999999999999999999999655 347999999998643 236789999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
+.||+||+.|...... .+.++.+++|.++|+.+||.+.++.. +..|||||+|||+||||++.+|++|+.|||
T Consensus 93 ~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~l-----P~~LSGGEQQRvaIARAiV~~P~vLlADEP 164 (223)
T COG2884 93 DRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARAL-----PSQLSGGEQQRVAIARAIVNQPAVLLADEP 164 (223)
T ss_pred cchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcC-----ccccCchHHHHHHHHHHHccCCCeEeecCC
Confidence 9999999999876653 34567778899999999999988876 568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhC-eEEEEecCcEEEEecC
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD-ELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~~l~l~~gG~~~~~g~ 1091 (1389)
|-+|||..+..|++++.++...|.|||+.||+. ++.+.+. +++.|. .|+++....
T Consensus 165 TGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~--~lv~~~~~rvl~l~-~Grl~~d~~ 220 (223)
T COG2884 165 TGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL--ELVNRMRHRVLALE-DGRLVRDES 220 (223)
T ss_pred CCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH--HHHHhccCcEEEEe-CCEEEeccc
Confidence 999999999999999999998899999999985 4555554 566666 588887654
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=339.52 Aligned_cols=217 Identities=27% Similarity=0.367 Sum_probs=184.6
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDL 255 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~ 255 (1389)
.++++|+|||+.|++||+++|+|||||||||||++|.|..+++ +|+|.+||.++..... ++.+||++|+..
T Consensus 15 ~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t---~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~n 91 (258)
T COG3638 15 GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT---SGEILFNGVQITKLKGKELRKLRRDIGMIFQQFN 91 (258)
T ss_pred CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCC---cceEEecccchhccchHHHHHHHHhceeEeccCC
Confidence 5678999999999999999999999999999999999999987 9999999988766542 468999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
+.+.+||.+|+..+...+. +.++.+ .+..+. +....+-..|+.+|+.+.+-+..
T Consensus 92 Lv~r~sv~~NVl~grl~~~--s~~~sl---------fglfsk---------------~dk~~Al~aLervgi~~~A~qra 145 (258)
T COG3638 92 LVPRLSVLENVLLGRLGYT--STWRSL---------FGLFSK---------------EDKAQALDALERVGILDKAYQRA 145 (258)
T ss_pred cccccHHHHHHHhhhcccc--hHHHHH---------hCCCCH---------------HHHHHHHHHHHHcCcHHHHHHHh
Confidence 9999999999988743221 111111 111111 11223445788999999998988
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
++ |||||+|||+|||||+.+|++++-|||+++|||.++.++++.|+++.+..|.|+|+.+||- .-+.++||||+
T Consensus 146 ~~-----LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Rii 219 (258)
T COG3638 146 ST-----LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRII 219 (258)
T ss_pred cc-----CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhhe
Confidence 87 9999999999999999999999999999999999999999999999998899999998875 47789999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 000615 416 LLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1389)
-|++|+|+|.||++|+.+
T Consensus 220 gl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 220 GLKAGRIVFDGPASELTD 237 (258)
T ss_pred EecCCcEEEeCChhhhhH
Confidence 999999999999998754
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=331.75 Aligned_cols=212 Identities=31% Similarity=0.366 Sum_probs=184.9
Q ss_pred CCCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCC
Q 000615 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDL 255 (1389)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~ 255 (1389)
++++...++++||||+++.||+++|+|||||||||+|++|++++.|+ +|+|++||.+..... .++.+|.++.+..
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~---~G~v~idg~d~~~~p~~vrr~IGVl~~e~g 85 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD---SGKVTIDGVDTVRDPSFVRRKIGVLFGERG 85 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCC---CceEEEeecccccChHHHhhhcceecCCcC
Confidence 34445556999999999999999999999999999999999999998 999999999875432 3688999998889
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
++..||++|||.|.+++.+. ++.+ .+.+++.+.+.|+|.+|.|+.+
T Consensus 86 lY~RlT~rEnl~~Fa~L~~l----------~~~~------------------------~kari~~l~k~l~l~~~~~rRv 131 (245)
T COG4555 86 LYARLTARENLKYFARLNGL----------SRKE------------------------IKARIAELSKRLQLLEYLDRRV 131 (245)
T ss_pred hhhhhhHHHHHHHHHHHhhh----------hhhH------------------------HHHHHHHHHHHhChHHHHHHHH
Confidence 99999999999998776432 2221 2335788899999999999999
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
|+ +|-|+||||+|||||+.+|++++|||||||||..++..+.+.++++.. .++++|.+. |..+|+..+||+|+
T Consensus 132 ~~-----~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSS-H~m~EvealCDrvi 204 (245)
T COG4555 132 GE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSS-HIMQEVEALCDRVI 204 (245)
T ss_pred hh-----hchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEec-ccHHHHHHhhheEE
Confidence 98 999999999999999999999999999999999999999999999865 366766664 56789999999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 000615 416 LLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1389)
+|++|++++.|+.+++.+
T Consensus 205 vlh~Gevv~~gs~~~l~~ 222 (245)
T COG4555 205 VLHKGEVVLEGSIEALDA 222 (245)
T ss_pred EEecCcEEEcCCHHHHHH
Confidence 999999999999988764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=400.87 Aligned_cols=207 Identities=29% Similarity=0.466 Sum_probs=184.0
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1389)
.+|+|+|++|+|||.++|+|+||||||||+|+|+|++.|. +|+|.+||+++++..+ |+.++||+|++.+|. .|
T Consensus 487 ~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gS 562 (709)
T COG2274 487 PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GS 562 (709)
T ss_pred chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEeHHhcCHHHHHhheeEEcccchhhc-Cc
Confidence 6899999999999999999999999999999999999997 9999999999988765 689999999998885 69
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.++. |+.+.++.++|+..++.+.. +..++..+||.||+ ++.
T Consensus 563 I~eNi~l~~-------------------------p~~~~e~i~~A~~~ag~~~f--------I~~lP~gy~t~v~E-~G~ 608 (709)
T COG2274 563 IRENIALGN-------------------------PEATDEEIIEAAQLAGAHEF--------IENLPMGYDTPVGE-GGA 608 (709)
T ss_pred HHHHHhcCC-------------------------CCCCHHHHHHHHHHhCcHHH--------HHhccccccccccc-CCC
Confidence 999998852 33445566777776665322 45699999999996 677
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++.+ ++|+|+..|.+ .+.+.||+|+||++|+
T Consensus 609 ~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiVl~~Gk 684 (709)
T COG2274 609 NLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIVLDQGK 684 (709)
T ss_pred CCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEEccCCc
Confidence 8999999999999999999999999999999999999999999999875 67888887765 6899999999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
++.+|+++|+++
T Consensus 685 iv~~gs~~ell~ 696 (709)
T COG2274 685 IVEQGSHEELLA 696 (709)
T ss_pred eeccCCHHHHHH
Confidence 999999999986
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=367.46 Aligned_cols=214 Identities=28% Similarity=0.399 Sum_probs=185.1
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..+ +++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~i~i~~l~k~~-------------~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p--~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY-------------GDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP--DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE-------------CCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEec
Confidence 46778877544 235699999999999999999999999999999999997653 479999999876
Q ss_pred Ch--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
.. ...++.+|||+|++.+++.+||+||+.|.+.++. .+..+..++++++++.++|.+..++.+ ++|||||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKV-----GELSGGM 143 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCch-----hhCCHHH
Confidence 43 3456789999999999999999999998765542 233444556889999999998888775 4799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 144 ~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~-G~i~~~g~ 221 (306)
T PRK13537 144 KRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEE-GRKIAEGA 221 (306)
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECC
Confidence 99999999999999999999999999999999999999999877999999999986 67788999999985 89999998
Q ss_pred C
Q 000615 1092 L 1092 (1389)
Q Consensus 1092 ~ 1092 (1389)
.
T Consensus 222 ~ 222 (306)
T PRK13537 222 P 222 (306)
T ss_pred H
Confidence 5
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=369.40 Aligned_cols=206 Identities=27% Similarity=0.397 Sum_probs=184.5
Q ss_pred cccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCC
Q 000615 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 877 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~l 955 (1389)
+++..+|+|||++|++||+++|+|||||||||||++|||...+ .+|+|.++|.++.. ...+|.+|+|+|+-.+||+|
T Consensus 15 yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p--~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHl 92 (352)
T COG3842 15 FGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP--SSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHM 92 (352)
T ss_pred cCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEECCCCChhhcccceeecCcccCCCC
Confidence 4467899999999999999999999999999999999998763 48999999998765 33568899999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCC
Q 000615 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1035 (1389)
||+||+.|+.+++ ....+++.+++|+++++.++|.++.++. +..|||||||||+|||||+.+|++|+||||.|
T Consensus 93 tV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~-----p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 93 TVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRK-----PHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred cHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhC-----hhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 9999999997743 2344566788999999999999999887 45899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1036 GLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+||..-+..++..++++.++ |.|.|++|||.. |...+.|++.+|+ +|++.-.|++.
T Consensus 166 aLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~-~G~I~Q~gtP~ 222 (352)
T COG3842 166 ALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMN-DGRIEQVGTPE 222 (352)
T ss_pred chhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEcc-CCceeecCCHH
Confidence 99999999999999998754 999999999976 7889999999998 58999988874
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=340.92 Aligned_cols=195 Identities=26% Similarity=0.405 Sum_probs=170.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1389)
.++|++||+.|++||+++|+|||||||||||++|.|...|+ +|.|.++|.++..... ++.+|||+|+..+
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt---~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT---SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 68999999999999999999999999999999999999987 9999999999876642 3579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccc-ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD-TMV 335 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d-t~v 335 (1389)
+|.+||+||+.+.....+.... ......+.+++.+||++..+ ..+
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~----------------------------------~~~~~~~~l~~~lgl~~~~~~~~p 140 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAG----------------------------------RRKRAAEELLEVLGLEDRLLKKKP 140 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChh----------------------------------HHHHHHHHHHHhcCChhhhccCCc
Confidence 9999999999976554432210 01223567889999997666 777
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
.+ |||||||||+|||||+.+|++++.||||.+||+.++..|++.++++.+..+.|+|+++|.| ++...|||++
T Consensus 141 ~e-----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i 213 (226)
T COG1136 141 SE-----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI 213 (226)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999999988788988888765 7888999999
Q ss_pred EEcCCeE
Q 000615 416 LLSEGQI 422 (1389)
Q Consensus 416 lL~~G~i 422 (1389)
.|.+|++
T Consensus 214 ~l~dG~~ 220 (226)
T COG1136 214 ELKDGKI 220 (226)
T ss_pred EEeCCee
Confidence 9999984
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=319.43 Aligned_cols=201 Identities=25% Similarity=0.403 Sum_probs=179.2
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCHHHHHH
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1389)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1389)
.+++.|++||++||+||||||||||||+|+|+..|. +|+|.+||++.+...| +|-++.++|+..+|.++||.+|+.
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~---~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNig 93 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPA---SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIG 93 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCC---CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhc
Confidence 578899999999999999999999999999999987 9999999999987665 588999999999999999999998
Q ss_pred HhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhH
Q 000615 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1389)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1389)
++.. ++-+ +.. +..+.++.++...||..+.++..++ |||||
T Consensus 94 LGl~---P~Lk------L~a-------------------------~~r~~v~~aa~~vGl~~~~~RLP~~-----LSGGq 134 (231)
T COG3840 94 LGLS---PGLK------LNA-------------------------EQREKVEAAAAQVGLAGFLKRLPGE-----LSGGQ 134 (231)
T ss_pred ccCC---cccc------cCH-------------------------HHHHHHHHHHHHhChhhHhhhCccc-----cCchH
Confidence 8643 1111 111 1123467788999999999999988 99999
Q ss_pred hhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecC
Q 000615 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1389)
Q Consensus 348 kqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~ 427 (1389)
||||++||+|+.+-+||+||||+|+|||.-+.++...+.+++.+.+.|+++..|||. ++..++|+++++++|+|.++|+
T Consensus 135 RQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 135 RQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred HHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeecc
Confidence 999999999999999999999999999999999999999999988999999999886 8889999999999999999999
Q ss_pred hhHHH
Q 000615 428 RDNVL 432 (1389)
Q Consensus 428 ~~~~~ 432 (1389)
.++..
T Consensus 214 ~~~~~ 218 (231)
T COG3840 214 TQELL 218 (231)
T ss_pred HHHHh
Confidence 98865
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-38 Score=365.39 Aligned_cols=217 Identities=24% Similarity=0.329 Sum_probs=183.9
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++..++.. ...+.+|+||||+|++||++||+||||||||||+++|+|..++ .+|+|.++|.++.
T Consensus 2 I~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p--~~G~I~i~G~~i~ 70 (343)
T TIGR02314 2 IKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TSGSVIVDGQDLT 70 (343)
T ss_pred EEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 5677877654210 1124699999999999999999999999999999999997663 4799999998764
Q ss_pred h---h---hhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000615 935 Q---E---TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 935 ~---~---~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 1008 (1389)
. . ..++.+||++|+..+++..||+||+.|..... ..+.++.++++.++++.+||.+..|.. +..||
T Consensus 71 ~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~-----~~~LS 142 (343)
T TIGR02314 71 TLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSY-----PSNLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCC
Confidence 3 1 24668999999999999999999999875433 233455667789999999999888876 45799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
|||||||+|||||+.+|++|+||||||+||+.++..+++.|+++.++ |.|||++||+++ .+.+.||++++|+ +|+++
T Consensus 143 gGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~-~G~iv 220 (343)
T TIGR02314 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (343)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 999999999976 5678899999998 58999
Q ss_pred EecCC
Q 000615 1088 YAGPL 1092 (1389)
Q Consensus 1088 ~~g~~ 1092 (1389)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T TIGR02314 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 99985
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=327.92 Aligned_cols=222 Identities=24% Similarity=0.399 Sum_probs=177.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCCC-----cCceEEEecCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 255 (1389)
.+.+|+|||+.|+++++||++|||||||||||++|....+ +..+++|+|.++|+++.+.. .|+.+|+|+|.|.
T Consensus 19 ~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn 98 (253)
T COG1117 19 DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN 98 (253)
T ss_pred chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC
Confidence 3569999999999999999999999999999999988754 35678999999999986542 3689999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 334 (1389)
-|| +|++||+.|+.+..|... +.+.+ +++..|+.-+|- +..|.+
T Consensus 99 PFp-~SIydNVayG~r~~g~~~--~~lde--------------------------------iVe~sLk~AaLWdEVKDrL 143 (253)
T COG1117 99 PFP-MSIYDNVAYGLRLHGIKD--KELDE--------------------------------IVESSLKKAALWDEVKDRL 143 (253)
T ss_pred CCC-chHHHHHHHhHHhhccch--HHHHH--------------------------------HHHHHHHHhHhHHHhHHHh
Confidence 999 999999999998877542 11111 122222322332 122222
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
= +...+|||||+||++|||||+-+|+||+||||||+|||.++..|-+++.++.+ +-|+|+.. |...++.+..|+.
T Consensus 144 ~--~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVT-HnmqQAaRvSD~t 218 (253)
T COG1117 144 H--KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVT-HNMQQAARVSDYT 218 (253)
T ss_pred h--CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEe-CCHHHHHHHhHhh
Confidence 1 22456999999999999999999999999999999999999999999999985 45666655 5566899999999
Q ss_pred EEEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl 452 (1389)
..+..|++++.|+.+++ |..|.++...||+
T Consensus 219 aFf~~G~LvE~g~T~~i--------F~~P~~~~TedYi 248 (253)
T COG1117 219 AFFYLGELVEFGPTDKI--------FTNPKHKRTEDYI 248 (253)
T ss_pred hhhcccEEEEEcCHHhh--------hcCccHHHHHHHh
Confidence 99999999999999987 3457766666665
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=369.88 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=180.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|++.++|++||
T Consensus 17 ~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (356)
T PRK11650 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERIT---SGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSV 93 (356)
T ss_pred CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCH
Confidence 46999999999999999999999999999999999999987 9999999999876544 4789999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.|+.+..+.. +. +....++.+++.+||++..|+.+++
T Consensus 94 ~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~----- 134 (356)
T PRK11650 94 RENMAYGLKIRGMP----------KA------------------------EIEERVAEAARILELEPLLDRKPRE----- 134 (356)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhHhhCChhh-----
Confidence 99999975432210 00 0112357789999999988888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|++|+|||||++||+.++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i 213 (356)
T PRK11650 135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVA 213 (356)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876677877776654 589999999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
+..|+++++.
T Consensus 214 ~~~g~~~~~~ 223 (356)
T PRK11650 214 EQIGTPVEVY 223 (356)
T ss_pred EEECCHHHHH
Confidence 9999999874
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=362.01 Aligned_cols=229 Identities=24% Similarity=0.360 Sum_probs=190.7
Q ss_pred cCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcCCCC
Q 000615 129 VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGA 208 (1389)
Q Consensus 129 ~~~~~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp~Gs 208 (1389)
..+..|+-+++|+|++.+- .++++||+++||+|++|+-+||+|+|||
T Consensus 343 ~~i~~~~~~I~F~dV~f~y---------------------------------~~k~~iL~gvsf~I~kGekVaIvG~nGs 389 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSY---------------------------------GPKRKVLKGVSFTIPKGEKVAIVGSNGS 389 (591)
T ss_pred CCcccCCCcEEEEeeEEEe---------------------------------CCCCceecceeEEecCCCEEEEECCCCC
Confidence 4567778889999988852 1334699999999999999999999999
Q ss_pred cHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHh
Q 000615 209 GKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAEL 285 (1389)
Q Consensus 209 GKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~ 285 (1389)
||||++++|.++++ . +|+|.+||+++.+..+ |+.+|||||+..+|.+ ||.+||.++..
T Consensus 390 GKSTilr~LlrF~d-~---sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-------------- 450 (591)
T KOG0057|consen 390 GKSTILRLLLRFFD-Y---SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-------------- 450 (591)
T ss_pred CHHHHHHHHHHHhc-c---CCcEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC--------------
Confidence 99999999999998 4 8999999999987754 5789999999888865 99999999732
Q ss_pred hHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeE
Q 000615 286 SRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLY 365 (1389)
Q Consensus 286 ~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~ill 365 (1389)
+...+++.++|..++- .|. ...|++.++|.||+ .++-|||||||||++|||++.+|+|++
T Consensus 451 -----------sas~eeV~e~~k~a~~-----hd~---i~~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 451 -----------SASDEEVVEACKRAGL-----HDV---ISRLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred -----------CcCHHHHHHHHHHcCc-----HHH---HHhccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEE
Confidence 2222333444433332 232 34589999999998 233389999999999999999999999
Q ss_pred EecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHH
Q 000615 366 MDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 366 LDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~ 433 (1389)
+|||||.||+.|..++++.+.+.. .++|+|+..|.. .+...||+|++|++|++...|+++|++.
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~ll~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DLLKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hhHhcCCEEEEEECCeeEEeccHHHHhh
Confidence 999999999999999999999843 478999888754 6889999999999999999999999986
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=362.37 Aligned_cols=206 Identities=25% Similarity=0.342 Sum_probs=178.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1389)
+++|+|||++|++|++++|+||||||||||+++|+|..+|+ +|+|.++|+++..... ++.++|++|+..++
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~---~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~ 94 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---SGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEECCcccc
Confidence 46999999999999999999999999999999999999987 9999999999876532 45799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.|.....+.. +. +....+.++++.+||++..|..+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~v~e~l~~vgL~~~~~~~~~~ 140 (343)
T TIGR02314 95 SSRTVFGNVALPLELDNTP----------KD------------------------EIKRKVTELLALVGLGDKHDSYPSN 140 (343)
T ss_pred ccCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999999864432211 00 0112356788999999988888876
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+..+.|+|++.|+ ...+.++||+|++|
T Consensus 141 -----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~-~~~v~~~~d~v~vl 214 (343)
T TIGR02314 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE-MDVVKRICDCVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999987667787777665 45788999999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+++++.
T Consensus 215 ~~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 215 SNGELIEQGTVSEIF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=348.77 Aligned_cols=202 Identities=26% Similarity=0.386 Sum_probs=173.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP--DSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD 90 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccChhhHHHHhcceEEEccCcccCC
Confidence 4699999999999999999999999999999999997653 47999999987532 234567999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
.+||+||+.+...... ....++..+.+.++++.++|.+..++.+ ..|||||||||+||++|+.+|+||+||||
T Consensus 91 ~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~ia~al~~~p~llllDEP 163 (235)
T cd03261 91 SLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYP-----AELSGGMKKRVALARALALDPELLLYDEP 163 (235)
T ss_pred CCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 9999999988643221 1233444567889999999988777664 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+|||+.++..+++.|++++++ |+|||+++|+++ ++.+.||++++|.+ |++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 221 (235)
T cd03261 164 TAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYD-GKIVAEGTP 221 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEEC-CeEEEecCH
Confidence 9999999999999999999764 899999999986 57778999999985 899988874
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=366.48 Aligned_cols=207 Identities=28% Similarity=0.428 Sum_probs=180.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+.+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ +|.++||+|+..+||++||
T Consensus 17 ~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv 93 (353)
T TIGR03265 17 FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQT---AGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLTV 93 (353)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCcH
Confidence 45899999999999999999999999999999999999987 9999999999876543 4789999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.|+.+.++.. +. +....++.+++.+||++..|+.+.+
T Consensus 94 ~eNi~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~l~L~~~~~~~~~~----- 134 (353)
T TIGR03265 94 ADNIAYGLKNRGMG----------RA------------------------EVAERVAELLDLVGLPGSERKYPGQ----- 134 (353)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhCChhh-----
Confidence 99999975432210 00 0122467789999999999888866
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|+++|||||+++||+.++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 135 LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i 213 (353)
T TIGR03265 135 LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVI 213 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876677887777655 589999999999999999
Q ss_pred EEecChhHHHH
Q 000615 423 VYQGPRDNVLE 433 (1389)
Q Consensus 423 v~~G~~~~~~~ 433 (1389)
++.|+++++.+
T Consensus 214 ~~~g~~~~~~~ 224 (353)
T TIGR03265 214 EQVGTPQEIYR 224 (353)
T ss_pred EEEcCHHHHHh
Confidence 99999998853
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=325.61 Aligned_cols=210 Identities=26% Similarity=0.361 Sum_probs=185.1
Q ss_pred ccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhh----hhheeeEeccCC
Q 000615 874 GVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQET----FARVSGYCEQND 949 (1389)
Q Consensus 874 ~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~----~~~~~gyv~Q~~ 949 (1389)
.+++++++++++||+.+++||++||+|||||||||.+.++.|...+ .+|.|.+||.+++... .+..+||+||++
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~--d~G~i~ld~~diT~lPm~~RArlGigYLpQE~ 88 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP--DSGKILLDDEDITKLPMHKRARLGIGYLPQEA 88 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec--CCceEEECCcccccCChHHHhhcCcccccccc
Confidence 3456778999999999999999999999999999999999997653 3799999999876432 334689999999
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCce
Q 000615 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1389)
Q Consensus 950 ~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1029 (1389)
..|..+||+||++.....+.. +....+++.+++++|+.+++.++++... ..||||||+|+-|||||+.+|+.++
T Consensus 89 SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a-----~sLSGGERRR~EIARaLa~~P~fiL 162 (243)
T COG1137 89 SIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKA-----YSLSGGERRRVEIARALAANPKFIL 162 (243)
T ss_pred hHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcc-----cccccchHHHHHHHHHHhcCCCEEE
Confidence 999999999999877666532 2333466667899999999999999873 3799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1030 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
||||++|+||-+...|+++++.+.+.|..|++|-|.-. |....|||.+++.+ |++...|.++
T Consensus 163 LDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~-G~vla~G~p~ 224 (243)
T COG1137 163 LDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISD-GKVLAEGSPE 224 (243)
T ss_pred ecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEec-CeEEecCCHH
Confidence 99999999999999999999999999999999999987 89999999999985 8999999864
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=365.39 Aligned_cols=206 Identities=24% Similarity=0.391 Sum_probs=180.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
..+|+|+|+++++||+++|+|||||||||||++|+|+.+|+ +|+|.++|.++....+ ++.++||+|+..++|++||
T Consensus 19 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv 95 (351)
T PRK11432 19 NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPT---EGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMSL 95 (351)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCCH
Confidence 45899999999999999999999999999999999999987 9999999999876554 4789999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.|+.+.++.. +. +....++++++.+||.+..|+.+.+
T Consensus 96 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gl~~~~~r~~~~----- 136 (351)
T PRK11432 96 GENVGYGLKMLGVP----------KE------------------------ERKQRVKEALELVDLAGFEDRYVDQ----- 136 (351)
T ss_pred HHHHHHHHhHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999976533211 00 0122467789999999888888766
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i 215 (351)
T PRK11432 137 ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKI 215 (351)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999876677777766554 589999999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
+..|+++++.
T Consensus 216 ~~~g~~~~~~ 225 (351)
T PRK11432 216 MQIGSPQELY 225 (351)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=365.05 Aligned_cols=215 Identities=26% Similarity=0.373 Sum_probs=186.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..+ +.+.+|+|||+++++||+++|+|||||||||||++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~-------------~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRF-------------GAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER--QTAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEe-------------CCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC--CCceEEEECCEEC
Confidence 36777776544 23569999999999999999999999999999999999865 3489999999876
Q ss_pred Ch-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
.. ...+|.+|||+|+..++|++||+||+.|....+ ..+..+.+++++++++.++|.++.++. +..||||||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~-----~~~LSgGq~ 140 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKY-----PGQLSGGQQ 140 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCC-----hhhCCHHHH
Confidence 43 234578999999999999999999999986543 233455667899999999999988876 457999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
|||+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++||+++ +....+|++++|++ |+++..|+
T Consensus 141 QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~-G~i~~~g~ 218 (353)
T TIGR03265 141 QRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNH-GVIEQVGT 218 (353)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999998765 899999999986 78889999999985 89999998
Q ss_pred CC
Q 000615 1092 LG 1093 (1389)
Q Consensus 1092 ~~ 1093 (1389)
+.
T Consensus 219 ~~ 220 (353)
T TIGR03265 219 PQ 220 (353)
T ss_pred HH
Confidence 63
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=360.24 Aligned_cols=202 Identities=27% Similarity=0.400 Sum_probs=176.6
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.+||++|++.+++.+|
T Consensus 5 ~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 5 DFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP--TSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred CeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 45799999999999999999999999999999999997653 47999999987532 234667999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCC
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1036 (1389)
|+||+.+.+.++. ....+.++.++++++.++|.+..++.+ +.|||||||||+||+||+.+|++|+|||||+|
T Consensus 83 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~g 154 (302)
T TIGR01188 83 GRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPV-----GTYSGGMRRRLDIAASLIHQPDVLFLDEPTTG 154 (302)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999998765542 223344556899999999988877764 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+.
T Consensus 155 LD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g~~ 208 (302)
T TIGR01188 155 LDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDH-GRIIAEGTP 208 (302)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999877999999999986 67788999999985 899999875
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=362.61 Aligned_cols=208 Identities=22% Similarity=0.329 Sum_probs=180.4
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1389)
.+.+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|.++....+ ++.++||+|++.
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~---~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPT---AGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 456999999999999999999999999999999999999987 9999999999876543 468999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
+++++||+||+.|+.+..+.. +.+ ....+..+++.+||++..++.+
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~vgL~~~~~~~p 127 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWP----------EQE------------------------RKEKALELLKLVGLEEYEHRYP 127 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCC----------HHH------------------------HHHHHHHHHHhcCCchhhhCCh
Confidence 999999999999975543211 000 1123567889999998888888
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.++++.+..++|+|++.|+ ..++..++|+|+
T Consensus 128 ~~-----LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd-~~ea~~~~drI~ 201 (363)
T TIGR01186 128 DE-----LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRIV 201 (363)
T ss_pred hh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEE
Confidence 77 999999999999999999999999999999999999999999999976557787776654 558899999999
Q ss_pred EEcCCeEEEecChhHHHH
Q 000615 416 LLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~ 433 (1389)
+|++|+++..|+++++..
T Consensus 202 vl~~G~iv~~g~~~ei~~ 219 (363)
T TIGR01186 202 IMKAGEIVQVGTPDEILR 219 (363)
T ss_pred EEeCCEEEeeCCHHHHHh
Confidence 999999999999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-37 Score=362.92 Aligned_cols=215 Identities=25% Similarity=0.392 Sum_probs=186.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..+ +++.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.++
T Consensus 6 ~l~~~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF-------------GSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP--TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC--CceEEEECCEEC
Confidence 46778877544 234699999999999999999999999999999999998663 489999999876
Q ss_pred Chh-hhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 934 NQE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
... ..+|.+|||+|+..++|++||+||+.|....+. ....+.+++++++++.++|.++.++. +..||||||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~-----~~~LSgGq~ 142 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRY-----VDQISGGQQ 142 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 432 234779999999999999999999999865432 34456667899999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
|||+|||||+.+|+||+|||||||||+.++..+.+.|+++.++ |+|+|++||+++ ++.+.+|++++|++ |+++..|+
T Consensus 143 QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~-G~i~~~g~ 220 (351)
T PRK11432 143 QRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNK-GKIMQIGS 220 (351)
T ss_pred HHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000615 1092 LG 1093 (1389)
Q Consensus 1092 ~~ 1093 (1389)
+.
T Consensus 221 ~~ 222 (351)
T PRK11432 221 PQ 222 (351)
T ss_pred HH
Confidence 63
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=365.67 Aligned_cols=215 Identities=25% Similarity=0.355 Sum_probs=185.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++..++ +++.+|+|||+++++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.
T Consensus 4 l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~ 69 (356)
T PRK11650 4 LKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER--ITSGEIWIGGRVVN 69 (356)
T ss_pred EEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC--CCceEEEECCEECC
Confidence 56777765431 23569999999999999999999999999999999999765 35899999998764
Q ss_pred h-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000615 935 Q-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 935 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 1013 (1389)
. ...++.+|||+|++.++|++||+||+.|....+ ..+..+..++++++++.++|.+..++.+ ..|||||||
T Consensus 70 ~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~Q 141 (356)
T PRK11650 70 ELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQ 141 (356)
T ss_pred CCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHH
Confidence 3 223478999999999999999999999986543 2344555677899999999998888874 579999999
Q ss_pred HHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1014 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||+|||||+.+|+||+||||||+||+.++..+.+.|+++.++ |.|+|++||++. ++.+.+|++++|. +|+++..|+.
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~-~G~i~~~g~~ 219 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMN-GGVAEQIGTP 219 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEEECCH
Confidence 999999999999999999999999999999999999998765 899999999986 6888999999997 5899999986
Q ss_pred C
Q 000615 1093 G 1093 (1389)
Q Consensus 1093 ~ 1093 (1389)
.
T Consensus 220 ~ 220 (356)
T PRK11650 220 V 220 (356)
T ss_pred H
Confidence 4
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=361.94 Aligned_cols=223 Identities=26% Similarity=0.430 Sum_probs=183.6
Q ss_pred cccccc-CCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEE
Q 000615 845 GMILPF-QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE 923 (1389)
Q Consensus 845 g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~ 923 (1389)
|...|. -...++|+||++.++..+ +..+|+|+||+|+|||.+||+||||+||||+.++|....+ +.+
T Consensus 455 G~~~p~~~~G~IeF~~VsFaYP~Rp----------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~--Pts 522 (716)
T KOG0058|consen 455 GTLAPDHLQGVIEFEDVSFAYPTRP----------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD--PTS 522 (716)
T ss_pred CccccccccceEEEEEeeeecCCCC----------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC--CCC
Confidence 443442 345799999999997644 4679999999999999999999999999999999998655 458
Q ss_pred EEEEEcCccCC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHH-----HHHHHHHHHcCCcccc
Q 000615 924 GDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELVELKSLN 995 (1389)
Q Consensus 924 G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l~L~~~~ 995 (1389)
|+|.+||+|+. ...+++++|+|.|+|.+|. -||+||+.|+.. +.+.++.. +.+++-+. ++.+-.
T Consensus 523 G~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY 594 (716)
T KOG0058|consen 523 GRILLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGY 594 (716)
T ss_pred CeEEECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccc
Confidence 99999999864 4668899999999999976 499999999753 23333222 11222222 345567
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhC
Q 000615 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1389)
Q Consensus 996 ~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1389)
|+.+|..|. .||||||||++|||||++||.||||||+||+||+++...|+++|.++.+ ++|||+|+|+++ ..+.+|
T Consensus 595 ~T~VGEkG~-qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLS--TV~~Ad 670 (716)
T KOG0058|consen 595 NTVVGEKGS-QLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLS--TVRHAD 670 (716)
T ss_pred ccccCCccc-cccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhh--Hhhhcc
Confidence 888987654 6999999999999999999999999999999999999999999998875 699999999965 788999
Q ss_pred eEEEEecCcEEEEecCC
Q 000615 1076 ELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1076 ~~l~l~~gG~~~~~g~~ 1092 (1389)
+|+++++ |++++.|..
T Consensus 671 ~Ivvi~~-G~V~E~G~h 686 (716)
T KOG0058|consen 671 QIVVIDK-GRVVEMGTH 686 (716)
T ss_pred EEEEEcC-CeEEecccH
Confidence 9999985 899999964
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=363.04 Aligned_cols=215 Identities=24% Similarity=0.335 Sum_probs=185.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEE--EEEEEcCc
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIE--GDIKISGY 931 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~--G~i~i~g~ 931 (1389)
.++++|+++.+. +..+|+|||++|++||+++|+|||||||||||++|+|...+ .+ |+|.++|.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p--~~~~G~i~~~g~ 69 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA--AGLTGRIAIADR 69 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCCEEEEECCE
Confidence 467778776542 34699999999999999999999999999999999997653 36 99999998
Q ss_pred cCCh-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 932 PKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 932 ~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
+... ...++.+|||+|++.++|.+||+||+.|....+ ..+..+.+++++++++.++|.+..++.+ ..||||
T Consensus 70 ~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~-----~~LSgG 141 (362)
T TIGR03258 70 DLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP-----AQLSGG 141 (362)
T ss_pred ECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh-----hhCCHH
Confidence 7643 223567999999999999999999999986543 2344556677999999999999888874 589999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC--CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT--GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~--g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||+++ ++...+|++++|++ |+++.
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~-G~i~~ 219 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKD-GRLAA 219 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 999999999999999999999999999999999999999999876 799999999986 67889999999985 89999
Q ss_pred ecCCC
Q 000615 1089 AGPLG 1093 (1389)
Q Consensus 1089 ~g~~~ 1093 (1389)
.|++.
T Consensus 220 ~g~~~ 224 (362)
T TIGR03258 220 HGEPQ 224 (362)
T ss_pred EcCHH
Confidence 99863
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-37 Score=356.01 Aligned_cols=206 Identities=29% Similarity=0.437 Sum_probs=177.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
..+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+|||+|++.+++.+|
T Consensus 20 ~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~---~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 96 (306)
T PRK13537 20 KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD---AGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFT 96 (306)
T ss_pred eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEecccchHHHHhcEEEEeccCcCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999876432 2467999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.|.++..+... . +....++.+++.+||++..++.+++
T Consensus 97 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 138 (306)
T PRK13537 97 VRENLLVFGRYFGLSA----------A------------------------AARALVPPLLEFAKLENKADAKVGE---- 138 (306)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCchhh----
Confidence 9999997654432110 0 0012356788899999999999876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|++++.|+. .++.++||+|++|++|+
T Consensus 139 -LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~ 215 (306)
T PRK13537 139 -LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGR 215 (306)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 367777776654 58999999999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
+++.|+++++.+
T Consensus 216 i~~~g~~~~l~~ 227 (306)
T PRK13537 216 KIAEGAPHALIE 227 (306)
T ss_pred EEEECCHHHHHh
Confidence 999999998864
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=361.38 Aligned_cols=214 Identities=27% Similarity=0.381 Sum_probs=184.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..+ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 41 ~i~i~nl~k~y-------------~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p--~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY-------------GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP--DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CceEEEECCEEC
Confidence 47888887654 245699999999999999999999999999999999997653 489999999875
Q ss_pred Ch--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
.. ...++.+||++|++.+++.+||.|++.+.+.++. ....+..+.++++++.++|.+..++.+ ++|||||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~-----~~LS~G~ 177 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARV-----SDLSGGM 177 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCCh-----hhCCHHH
Confidence 42 3456779999999999999999999987665432 223334456788999999998888775 4799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|+
T Consensus 178 kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~-G~i~~~g~ 255 (340)
T PRK13536 178 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEA-GRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67788999999985 89999998
Q ss_pred C
Q 000615 1092 L 1092 (1389)
Q Consensus 1092 ~ 1092 (1389)
+
T Consensus 256 ~ 256 (340)
T PRK13536 256 P 256 (340)
T ss_pred H
Confidence 5
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=364.17 Aligned_cols=218 Identities=26% Similarity=0.369 Sum_probs=185.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
.++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+||.+||
T Consensus 27 ~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 103 (375)
T PRK09452 27 KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPD---SGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTV 103 (375)
T ss_pred eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEecCcccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999999876544 4789999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.|+.+.++.. +. +....++++++.+||++..|+.+.+
T Consensus 104 ~eNi~~~l~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~p~~----- 144 (375)
T PRK09452 104 FENVAFGLRMQKTP----------AA------------------------EITPRVMEALRMVQLEEFAQRKPHQ----- 144 (375)
T ss_pred HHHHHHHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 99999975432211 00 0112357788999999988888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|++|+||||++|||..++.++.+.|+++.+..+.|+|++.|. ..++..++|+|++|++|++
T Consensus 145 LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd-~~ea~~laDri~vl~~G~i 223 (375)
T PRK09452 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHD-QEEALTMSDRIVVMRDGRI 223 (375)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987667777776654 5689999999999999999
Q ss_pred EEecChhHHHHHHHhcCCCCCCCCChHHHH
Q 000615 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452 (1389)
Q Consensus 423 v~~G~~~~~~~~F~~lG~~~p~~~~~adfl 452 (1389)
+..|+++++.+ .|....+++|+
T Consensus 224 ~~~g~~~~i~~--------~p~~~~~a~~~ 245 (375)
T PRK09452 224 EQDGTPREIYE--------EPKNLFVARFI 245 (375)
T ss_pred EEEcCHHHHHh--------CcccHHHHHhc
Confidence 99999998743 35554555554
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=362.72 Aligned_cols=206 Identities=22% Similarity=0.365 Sum_probs=179.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCce--eEEEECCeeCCCCCc-CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRAS--GKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~--G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~l 260 (1389)
..+|+|+|++|++|++++|+|||||||||||++|+|..+|+ + |+|.++|+++....+ ++.++||+|++.+++.+
T Consensus 18 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~ 94 (362)
T TIGR03258 18 NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAA---GLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPHL 94 (362)
T ss_pred eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCEEEEECCEECCCCCHHHCCEEEEECCcccCCCC
Confidence 46999999999999999999999999999999999999987 7 999999999865543 46799999999999999
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+||+.|+.+..+.. +. +....++++++.+||++..|+.+++
T Consensus 95 tv~enl~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~~gL~~~~~~~~~~--- 137 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMP----------KA------------------------DIAERVADALKLVGLGDAAAHLPAQ--- 137 (362)
T ss_pred cHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHhcCCCchhhCChhh---
Confidence 9999999975433211 00 0112467789999999999998876
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhC-CCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHIL-DVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~-~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+.. +.|+|++.|+ ..++..++|+|++|++
T Consensus 138 --LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd-~~ea~~l~dri~vl~~ 214 (362)
T TIGR03258 138 --LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHD-QDDALTLADKAGIMKD 214 (362)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998765 5677666654 5688999999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|+++..|+++++.
T Consensus 215 G~i~~~g~~~~~~ 227 (362)
T TIGR03258 215 GRLAAHGEPQALY 227 (362)
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999884
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=341.22 Aligned_cols=214 Identities=26% Similarity=0.369 Sum_probs=186.3
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
+.++|++|.++. +..+|+|+|++|++||.++|+|+||||||||+++|+|...+ .+|.|.++|.+..
T Consensus 4 i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p--~~G~v~~~g~~~~ 69 (235)
T COG1122 4 IEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP--TSGEVLVDGLDTS 69 (235)
T ss_pred EEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC--CCCEEEECCeecc
Confidence 567888876531 15799999999999999999999999999999999997663 4699999998854
Q ss_pred ----hhhhhheeeEeccCCCCC-CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 935 ----QETFARVSGYCEQNDIHS-PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 935 ----~~~~~~~~gyv~Q~~~~~-~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
...+++.+|||+|++..+ ..-||.|.+.|+..- ...+.++.+++++++++.+++.+++++. +..|||
T Consensus 70 ~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n---~g~~~~e~~~rv~~~l~~vgl~~~~~r~-----p~~LSG 141 (235)
T COG1122 70 SEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLEN---LGLPREEIEERVAEALELVGLEELLDRP-----PFNLSG 141 (235)
T ss_pred chhhHHHhhcceEEEEECcccccccCcHHHHHhhchhh---cCCCHHHHHHHHHHHHHHcCchhhccCC-----ccccCC
Confidence 456788999999998654 457999999998643 3455667888999999999999998876 458999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
||||||+||.+|+.+|++|+|||||||||+.++..+++.++++.++ |.|||++|||.+ .+.+.+|++++|++ |++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~-G~i~~ 219 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDD-GKILA 219 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEEC-CEEee
Confidence 9999999999999999999999999999999999999999999877 689999999976 57777999999985 89999
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
+|++
T Consensus 220 ~g~p 223 (235)
T COG1122 220 DGDP 223 (235)
T ss_pred cCCH
Confidence 9985
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=330.90 Aligned_cols=216 Identities=26% Similarity=0.363 Sum_probs=177.1
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++.+|++..++.. .....+|+|||++|.+||++||+|+||||||||.++|+|...+ .+|+|.++|.+..
T Consensus 4 l~v~nl~~~y~~~---------~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~ 72 (252)
T COG1124 4 LSVRNLSIVYGGG---------KFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP--SSGSILLDGKPLA 72 (252)
T ss_pred EEEeceEEEecCC---------cchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC--CCceEEECCcccC
Confidence 5677776544321 1112599999999999999999999999999999999997663 4899999997654
Q ss_pred hh----hhhheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCC
Q 000615 935 QE----TFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGL 1007 (1389)
Q Consensus 935 ~~----~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~L 1007 (1389)
.. .+++.+.+|+||+. +.|..||++.|.-.... ...++.+ +++.++++.+||.+ ..++. +..|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R~-----P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDRR-----PHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhcC-----chhc
Confidence 32 46788999999985 67999999988655433 2233333 33899999999965 34443 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1008 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
|||||||+||||||+.+|++|+||||||+||+..+..|++++.++.++ |.|.|++|||.+. +...|||+++|.+ |++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~Vm~~-G~i 220 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAVMDN-GQI 220 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheeeeeC-CeE
Confidence 999999999999999999999999999999999999999999999754 7899999999874 7789999999985 899
Q ss_pred EEecCCC
Q 000615 1087 IYAGPLG 1093 (1389)
Q Consensus 1087 ~~~g~~~ 1093 (1389)
++.+|..
T Consensus 221 vE~~~~~ 227 (252)
T COG1124 221 VEIGPTE 227 (252)
T ss_pred EEeechh
Confidence 9999864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-37 Score=340.66 Aligned_cols=208 Identities=25% Similarity=0.340 Sum_probs=173.4
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++. +.+.+|+|+|+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~ 68 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP--TRGKIRFNGQDLT 68 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEehh
Confidence 456777765421 123599999999999999999999999999999999997653 4799999998753
Q ss_pred h------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000615 935 Q------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 935 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 1008 (1389)
. ...++.++|++|++.+++.+||.||+.+....+. ...++.++.++++++.++|.+..+..+ ..||
T Consensus 69 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 140 (216)
T TIGR00960 69 RLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALP-----MQLS 140 (216)
T ss_pred hcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCC
Confidence 2 1245679999999999999999999988754321 223344566899999999988777664 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 141 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~ 215 (216)
T TIGR00960 141 GGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSR-GR 215 (216)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 99999999999999999999999999999999999999999999777999999999976 56678999999975 54
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-37 Score=362.83 Aligned_cols=206 Identities=28% Similarity=0.426 Sum_probs=173.2
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lT 261 (1389)
++++|+|+++++|+.++|+|+||||||||+++|+|+++|+ +|+|.+||++..+.. ++++++||+|++.+++ -|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~---~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~-gT 410 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT---QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA-GT 410 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCC---CceEEECCccccccCHHHHHhHeeeeCCCCcccc-cc
Confidence 7899999999999999999999999999999999999987 999999999987765 4689999999999987 59
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
+||||.++... .+.++..+++...+ +.+.+.-++..||.+|+ .++
T Consensus 411 ireNi~l~~~~-------------------------~s~e~i~~al~~a~---------l~~~v~~p~GLdt~ige-~G~ 455 (559)
T COG4988 411 IRENILLARPD-------------------------ASDEEIIAALDQAG---------LLEFVPKPDGLDTVIGE-GGA 455 (559)
T ss_pred HHHHhhccCCc-------------------------CCHHHHHHHHHHhc---------HHHhhcCCCcccchhcc-CCC
Confidence 99999986321 11111111111111 12222226688999996 678
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
||||||+|||++|||++.+++++++||||++||.+++..|.+.|.++++ ++|+++..|++ +....+|+|++|++|+
T Consensus 456 ~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~~~~~~D~I~vld~G~ 531 (559)
T COG4988 456 GLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--EDAADADRIVVLDNGR 531 (559)
T ss_pred CCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--HHHhcCCEEEEecCCc
Confidence 8999999999999999999999999999999999999999999999987 57888888765 5778899999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
++++|.++++.+
T Consensus 532 l~~~g~~~~L~~ 543 (559)
T COG4988 532 LVEQGTHEELSE 543 (559)
T ss_pred eeccCCHHHHhh
Confidence 999999999864
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-37 Score=339.11 Aligned_cols=199 Identities=30% Similarity=0.437 Sum_probs=169.2
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCCCHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|++
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 90 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER--PDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTVA 90 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcHH
Confidence 469999999999999999999999999999999999765 347999999987543 22345799999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+..... ....+...+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD 162 (213)
T cd03259 91 ENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HELSGGQQQRVALARALAREPSLLLLDEPLSALD 162 (213)
T ss_pred HHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998765332 1223344456889999999988777663 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1039 ARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
+.++..+++.|+++++ .|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~g 213 (213)
T cd03259 163 AKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNE-GRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999876 4899999999976 57788999999985 7887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=336.63 Aligned_cols=198 Identities=27% Similarity=0.441 Sum_probs=170.3
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..++.++|++|++.+++.+||+|
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL--PDSGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHHH
Confidence 469999999999999999999999999999999999765 348999999987643 34567999999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
|+.+....+. ....+..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~ 161 (210)
T cd03269 90 QLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKR-----VEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDP 161 (210)
T ss_pred HHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCc-----HhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 9988654432 22334455688999999998777665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 162 ~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~ 210 (210)
T cd03269 162 VNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNK-GRAVLYG 210 (210)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeC-CEEEecC
Confidence 9999999999998877899999999976 56678999999985 7877654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=353.68 Aligned_cols=214 Identities=28% Similarity=0.377 Sum_probs=181.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~i~~~~l~~~~-------------~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY-------------GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP--DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe-------------CCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 36777777654 234699999999999999999999999999999999997653 479999999875
Q ss_pred Ch--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 934 NQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 934 ~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
.. ...++.+||++|++.+++.+||+||+.+.+.... .+.++..+.++++++.++|.+..++.+ ..|||||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~-----~~LSgG~ 140 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRV-----ALLSGGM 140 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCch-----hhCCHHH
Confidence 32 2346779999999999999999999987554321 223344456788999999988777764 4799999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~ 218 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLES-GRKIAEGR 218 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 99999999999999999999999999999999999999999878999999999986 67788999999985 89999987
Q ss_pred C
Q 000615 1092 L 1092 (1389)
Q Consensus 1092 ~ 1092 (1389)
.
T Consensus 219 ~ 219 (303)
T TIGR01288 219 P 219 (303)
T ss_pred H
Confidence 5
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-37 Score=359.12 Aligned_cols=204 Identities=23% Similarity=0.291 Sum_probs=178.0
Q ss_pred ccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhh----hheeeEeccCCC
Q 000615 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF----ARVSGYCEQNDI 950 (1389)
Q Consensus 878 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~----~~~~gyv~Q~~~ 950 (1389)
+.+.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+ ++.+|||+|++.
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~--p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE--PTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC--CCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 34679999999999999999999999999999999999766 358999999987643 223 568999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 951 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
++|.+||+||+.|...+. ....++..+++.++++.++|.+..++.+ ..|||||||||+|||||+.+|+||||
T Consensus 82 l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLLl 153 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILLM 153 (363)
T ss_pred CCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999876543 2344556678999999999988877764 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
||||+|||+.++..+++.++++.++ |+|||++||+++ ++.+.+|++++|. +|+++..|+..
T Consensus 154 DEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~-~G~iv~~g~~~ 215 (363)
T TIGR01186 154 DEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMK-AGEIVQVGTPD 215 (363)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEe-CCEEEeeCCHH
Confidence 9999999999999999999999754 899999999976 5788899999997 58999998753
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=390.19 Aligned_cols=214 Identities=25% Similarity=0.409 Sum_probs=185.1
Q ss_pred CCCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCC
Q 000615 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD 254 (1389)
Q Consensus 178 ~~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d 254 (1389)
++.++..+||+|+|++|++|+.+||||||||||||.+.+|...|+|+ +|.|.+||++++..+. |+.+|.|+|+|
T Consensus 997 YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~---~G~V~IDg~dik~lnl~~LR~~i~lVsQEP 1073 (1228)
T KOG0055|consen 997 YPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPD---AGKVKIDGVDIKDLNLKWLRKQIGLVSQEP 1073 (1228)
T ss_pred CCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCcccccCCHHHHHHhcceeccCc
Confidence 45567788999999999999999999999999999999999999997 9999999999998875 57899999999
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 334 (1389)
.+|. .|+||||.|+... ...++.++|+..++.+ +. +.+|++++||.
T Consensus 1074 ~LF~-~TIrENI~YG~~~-------------------------vs~~eIi~Aak~ANaH-----~F---I~sLP~GyDT~ 1119 (1228)
T KOG0055|consen 1074 VLFN-GTIRENIAYGSEE-------------------------VSEEEIIEAAKLANAH-----NF---ISSLPQGYDTR 1119 (1228)
T ss_pred hhhc-ccHHHHHhccCCC-------------------------CCHHHHHHHHHHhhhH-----HH---HhcCcCcccCc
Confidence 9996 5999999997210 1233455566555443 22 45799999999
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
||+ .+..||||||||++||||+++||+||||||.||+||+++..-+.+.|.+... |+|.|+.-|.. .+.+.+|.|
T Consensus 1120 vGe-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~--gRT~IvIAHRL--STIqnaD~I 1194 (1228)
T KOG0055|consen 1120 VGE-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME--GRTTIVIAHRL--STIQNADVI 1194 (1228)
T ss_pred cCc-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc--CCcEEEEecch--hhhhcCCEE
Confidence 997 3445999999999999999999999999999999999999999999999865 67777776654 689999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (1389)
+|+++|+|+++|++++++.
T Consensus 1195 ~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1195 AVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEECCEEEecccHHHHHh
Confidence 9999999999999999985
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-36 Score=339.04 Aligned_cols=200 Identities=27% Similarity=0.426 Sum_probs=172.1
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... .++.++|++|++.+++.+|++|
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~e 92 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP--TSGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVLD 92 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECcc--ccCcEEEEecccccccCCCHHH
Confidence 4699999999999999999999999999999999997653 47999999987642 3567999999999889999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
|+.+....+. ...+...+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 164 (220)
T cd03293 93 NVALGLELQG---VPKAEARERAEELLELVGLSGFENAYP-----HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164 (220)
T ss_pred HHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCH
Confidence 9988654331 223344566889999999987777663 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEecCC
Q 000615 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPL 1092 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~~~~~g~~ 1092 (1389)
.++..+.+.|+++.+ .|+|||+++|+++ ++.+.+|++++|.+ +|+++..+++
T Consensus 165 ~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 165 LTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEe
Confidence 999999999999864 4899999999986 57788999999985 5899888765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.56 Aligned_cols=201 Identities=29% Similarity=0.403 Sum_probs=172.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP--TSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTG 90 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEecCcChHHHhhcEEEecCCccccccCcH
Confidence 4699999999999999999999999999999999997653 47999999976532 2345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
+|++.+....+. ...++.++.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~la~al~~~p~llllDEPt~~L 162 (220)
T cd03265 91 WENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLV-----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGL 162 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 999988754431 223344556899999999988777764 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (220)
T cd03265 163 DPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDH-GRIIAEGTP 216 (220)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEeCCh
Confidence 999999999999999876 899999999986 57778999999985 889888764
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=359.67 Aligned_cols=215 Identities=22% Similarity=0.339 Sum_probs=185.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+. .+.+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 14 ~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p--~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP--DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 477888876542 34699999999999999999999999999999999997663 479999999876
Q ss_pred Ch-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
.. ...+|.+|||+|++.++|.+||+||+.|+...+ ..+..+.+++++++++.++|.+..++.+ ..||||||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~ 150 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQ 150 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHH
Confidence 43 223577999999999999999999999976433 2334455667899999999998888774 57999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|+|++||++. ++...+|++++|.+ |+++..|+
T Consensus 151 QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~-G~i~~~g~ 228 (375)
T PRK09452 151 QRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRD-GRIEQDGT 228 (375)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999984 89999988
Q ss_pred CC
Q 000615 1092 LG 1093 (1389)
Q Consensus 1092 ~~ 1093 (1389)
..
T Consensus 229 ~~ 230 (375)
T PRK09452 229 PR 230 (375)
T ss_pred HH
Confidence 53
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=386.03 Aligned_cols=207 Identities=26% Similarity=0.356 Sum_probs=173.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++++||+.++|+||||||||||+++|+|.+ |. +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 363 ~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~ 437 (588)
T PRK11174 363 KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PY---QGSLKINGIELRELDPESWRKHLSWVGQNPQLPH-G 437 (588)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CC---CcEEEECCEecccCCHHHHHhheEEecCCCcCCC-c
Confidence 36999999999999999999999999999999999999 75 8999999999987754 578999999999986 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++.. +.+.++..+++..++. +.. .-.|+++.||.||+. +
T Consensus 438 TI~eNI~~g~~-------------------------~~~~eei~~al~~a~l------~~~--i~~lp~G~dT~vge~-G 483 (588)
T PRK11174 438 TLRDNVLLGNP-------------------------DASDEQLQQALENAWV------SEF--LPLLPQGLDTPIGDQ-A 483 (588)
T ss_pred CHHHHhhcCCC-------------------------CCCHHHHHHHHHHhCH------HHH--HHhcccccccccccC-C
Confidence 99999988621 1112223333332221 111 234788999999974 5
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
..||||||||++||||++++|+||+||||||+||+.++..|.+.|+++.+ ++|+|+..|++ ++.+.||+|++|++|
T Consensus 484 ~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~--~~TvIiItHrl--~~i~~aD~Iivl~~G 559 (588)
T PRK11174 484 AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR--RQTTLMVTHQL--EDLAQWDQIWVMQDG 559 (588)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCh--HHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999998753 68888888877 577889999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++|+++
T Consensus 560 ~i~e~G~~~eL~~ 572 (588)
T PRK11174 560 QIVQQGDYAELSQ 572 (588)
T ss_pred eEeecCCHHHHHh
Confidence 9999999999874
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=359.61 Aligned_cols=217 Identities=26% Similarity=0.402 Sum_probs=184.1
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++..+ +.+.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 3 L~i~~l~~~~-------------~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSF-------------GRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ--TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEe-------------CCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 5667776543 234699999999999999999999999999999999997653 4799999998764
Q ss_pred h-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 935 Q-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 935 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
. ...++.+|||+|++.++|.+||+||+.|....+.. ...+.++.+++++++++.++|.+..++. +..||||||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LSgGq~ 142 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRY-----PAQLSGGQK 142 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCC-----hhhCCHHHH
Confidence 3 22346799999999999999999999987653211 1233455566789999999999888776 457999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|+|++||+++ ++...+|++++|++ |++++.|+
T Consensus 143 QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~-G~i~~~g~ 220 (353)
T PRK10851 143 QRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQ-GNIEQAGT 220 (353)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcC
Confidence 9999999999999999999999999999999999999999765 899999999986 68889999999985 89999998
Q ss_pred CC
Q 000615 1092 LG 1093 (1389)
Q Consensus 1092 ~~ 1093 (1389)
..
T Consensus 221 ~~ 222 (353)
T PRK10851 221 PD 222 (353)
T ss_pred HH
Confidence 53
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=340.02 Aligned_cols=207 Identities=27% Similarity=0.370 Sum_probs=174.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 13 RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPD---SGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 46999999999999999999999999999999999999887 899999999876532 245799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.++....... ... +....++.+++.+||++..++.+++
T Consensus 90 ~~~tv~~~l~~~~~~~~~~---------~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (235)
T cd03261 90 DSLTVFENVAFPLREHTRL---------SEE------------------------EIREIVLEKLEAVGLRGAEDLYPAE 136 (235)
T ss_pred CCCcHHHHHHHHHhhccCC---------CHH------------------------HHHHHHHHHHHHcCCchhhcCChhh
Confidence 9999999998863311000 000 0012346678899998888888876
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|
T Consensus 137 -----LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l 210 (235)
T cd03261 137 -----LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVL 210 (235)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998764467777776654 4788899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (235)
T cd03261 211 YDGKIVAEGTPEELR 225 (235)
T ss_pred ECCeEEEecCHHHHc
Confidence 999999999988763
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=310.60 Aligned_cols=196 Identities=27% Similarity=0.363 Sum_probs=171.4
Q ss_pred cceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhhheeeEeccCCCCCCCCCHHHHHHH
Q 000615 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLY 963 (1389)
Q Consensus 885 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f 963 (1389)
..++.|++||++||+||||||||||||+|+|...+ .+|+|+|||.+.... ...|-++.++|+..+|.++||++|+-+
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P--~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigL 94 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP--ASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGL 94 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC--CCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcc
Confidence 35678999999999999999999999999998774 489999999986542 345668999999999999999999987
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHH
Q 000615 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1389)
Q Consensus 964 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1043 (1389)
+..-.+ ..+ .+.+++++.++..+||..+.+++. ..|||||||||++||+|+++-+||+||||+|.|||.-+.
T Consensus 95 Gl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP-----~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 95 GLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLP-----GELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred cCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCc-----cccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 653221 122 344567999999999999999884 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
++..++.+++++ +.|++++||+|+ |.....|+++++++ |+|.+.|+.
T Consensus 167 eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~-Gri~~~g~~ 214 (231)
T COG3840 167 EMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDN-GRIAAQGST 214 (231)
T ss_pred HHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeC-CEEEeeccH
Confidence 999999999754 899999999998 89999999999985 899999986
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=357.24 Aligned_cols=217 Identities=25% Similarity=0.350 Sum_probs=182.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++. +.+++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~i~~l~~~y~~---------~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p--~~G~I~~~g~~i~ 70 (343)
T PRK11153 2 IELKNISKVFPQ---------GGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP--TSGRVLVDGQDLT 70 (343)
T ss_pred EEEEeEEEEeCC---------CCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 467777765521 01135699999999999999999999999999999999997653 4799999998764
Q ss_pred h------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000615 935 Q------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 935 ~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 1008 (1389)
. ...++.+||++|++.+++.+||+||+.+....+ ....++..+.++++++.++|.+..++.+ ..||
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS 142 (343)
T PRK11153 71 ALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLS 142 (343)
T ss_pred cCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 2 123567999999999999999999999875443 1233444567899999999988777763 5799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
|||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.||++++|.+ |+++
T Consensus 143 gGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~-G~i~ 220 (343)
T PRK11153 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDA-GRLV 220 (343)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEE
Confidence 99999999999999999999999999999999999999999999765 899999999986 56778999999984 8999
Q ss_pred EecCC
Q 000615 1088 YAGPL 1092 (1389)
Q Consensus 1088 ~~g~~ 1092 (1389)
+.|+.
T Consensus 221 ~~g~~ 225 (343)
T PRK11153 221 EQGTV 225 (343)
T ss_pred EEcCH
Confidence 98875
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=335.72 Aligned_cols=199 Identities=27% Similarity=0.396 Sum_probs=169.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhhheeeEeccCCCCCCCCCHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++..|++
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE--PTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTVY 90 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCCcccceEEEEecChhhccCCCHH
Confidence 469999999999999999999999999999999999765 3479999999875421 2245799999999988899999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+....+ ....++.++.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 91 ~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr~~laral~~~p~llllDEPt~~LD 162 (213)
T cd03301 91 DNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLD 162 (213)
T ss_pred HHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9998865432 1223444556889999999988777764 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
+.++..+++.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-g~~~~~g 213 (213)
T cd03301 163 AKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMND-GQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecC
Confidence 99999999999999864 899999999976 57778999999975 7888765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=357.48 Aligned_cols=210 Identities=28% Similarity=0.426 Sum_probs=178.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+++|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 15 ~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 15 TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQT---SGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 46999999999999999999999999999999999999987 9999999999865443 3679999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.|+.+....... ..+. +....++.+++.+||++..|+.+.+
T Consensus 92 ~eni~~~~~~~~~~~~------~~~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~----- 136 (353)
T PRK10851 92 FDNIAFGLTVLPRRER------PNAA------------------------AIKAKVTQLLEMVQLAHLADRYPAQ----- 136 (353)
T ss_pred HHHHHhhhhhcccccC------CCHH------------------------HHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 9999997543110000 0000 0112456789999999888888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+..+.|+|++.| ...++..++|+|++|++|++
T Consensus 137 LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTH-d~~ea~~~~Dri~vl~~G~i 215 (353)
T PRK10851 137 LSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTH-DQEEAMEVADRVVVMSQGNI 215 (353)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC-CHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999998765677766655 45689999999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
++.|+++++.
T Consensus 216 ~~~g~~~~i~ 225 (353)
T PRK10851 216 EQAGTPDQVW 225 (353)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=359.83 Aligned_cols=206 Identities=23% Similarity=0.319 Sum_probs=178.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
..+|+|+|+++++|++++|+|||||||||||++|+|..+|+ +|+|.++|+++....+ ++.++||+|++.+|+++||
T Consensus 32 ~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 32 QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPT---AGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 35899999999999999999999999999999999999987 9999999999865443 4789999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
.||+.|+.+..+.. +. +....++.+++.+||.+..|+.+.+
T Consensus 109 ~eNi~~~l~~~~~~----------~~------------------------~~~~~v~~~l~~l~L~~~~~~~~~~----- 149 (377)
T PRK11607 109 EQNIAFGLKQDKLP----------KA------------------------EIASRVNEMLGLVHMQEFAKRKPHQ----- 149 (377)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99999975432211 00 0112356789999999888888766
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|++|||||||++||..++.++.+.|+++.+..+.|+|++.|+ ..++..++|+|++|++|++
T Consensus 150 LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd-~~ea~~laDri~vl~~G~i 228 (377)
T PRK11607 150 LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHD-QEEAMTMAGRIAIMNRGKF 228 (377)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCC-HHHHHHhCCEEEEEeCCEE
Confidence 999999999999999999999999999999999999999999999877667777777655 4589999999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
+..|+++++.
T Consensus 229 ~~~g~~~~~~ 238 (377)
T PRK11607 229 VQIGEPEEIY 238 (377)
T ss_pred EEEcCHHHHH
Confidence 9999999874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-37 Score=337.44 Aligned_cols=207 Identities=26% Similarity=0.372 Sum_probs=180.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCC----CCCcCceEEEecCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN----EFVPQRTCAYISQHD-LHHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~----~~~~~~~~~yv~Q~d-~~~~ 258 (1389)
..+|+|+|+.|++|+.++|+||||||||||+++|+|.++|. +|+|.++|.+.. ....++.+|||+|++ ..+.
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~---~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~ 93 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPT---SGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLF 93 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCC---CCEEEECCeeccchhhHHHhhcceEEEEECcccccc
Confidence 57999999999999999999999999999999999999997 899999999865 223468899999996 4455
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
.-||.|.++|+.+..+.... +...+++.+++.+||.+.+|..+-+
T Consensus 94 ~~tV~~evafg~~n~g~~~~----------------------------------e~~~rv~~~l~~vgl~~~~~r~p~~- 138 (235)
T COG1122 94 GPTVEDEVAFGLENLGLPRE----------------------------------EIEERVAEALELVGLEELLDRPPFN- 138 (235)
T ss_pred cCcHHHHHhhchhhcCCCHH----------------------------------HHHHHHHHHHHHcCchhhccCCccc-
Confidence 67999999999887664310 0123578899999999999998876
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||.+|+.+|++|+|||||||||+..+.++++.++++.+..+.|+|++. |....+..++|++++|+
T Consensus 139 ----LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~t-Hd~~~~~~~ad~v~vl~ 213 (235)
T COG1122 139 ----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVT-HDLELVLEYADRVVVLD 213 (235)
T ss_pred ----cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEe-CcHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999886566777665 55678999999999999
Q ss_pred CCeEEEecChhHHHH
Q 000615 419 EGQIVYQGPRDNVLE 433 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1389)
+|+++++|++.++.+
T Consensus 214 ~G~i~~~g~p~~i~~ 228 (235)
T COG1122 214 DGKILADGDPAEIFN 228 (235)
T ss_pred CCEEeecCCHHHHhh
Confidence 999999999887754
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=336.73 Aligned_cols=198 Identities=30% Similarity=0.462 Sum_probs=170.7
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCHH
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+... ..+++.++|++|++.+++.+||+
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 96 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP--DAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAR 96 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC--CCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHH
Confidence 699999999999999999999999999999999997653 47999999987542 23467799999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+....+ .....+..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||
T Consensus 97 e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD 168 (218)
T cd03266 97 ENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----GGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168 (218)
T ss_pred HHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCC
Confidence 9998765433 1233444567899999999988777663 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 169 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 218 (218)
T cd03266 169 VMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHR-GRVVYEG 218 (218)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEeecC
Confidence 99999999999999777999999999976 57788999999985 7877653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=321.00 Aligned_cols=207 Identities=25% Similarity=0.359 Sum_probs=175.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~ 258 (1389)
..+||++||+++++||+++|+||||+||||||++|+|..++. +|+|.++|++++...+ ++.++||||....|+
T Consensus 15 ~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~---~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR---SGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeeEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 468999999999999999999999999999999999999886 8999999999988765 357999999999999
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhC-CcccccccccC
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGD 337 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lg-L~~~~dt~vg~ 337 (1389)
.|||+|||..++...... +. . ....|.+.+.|= |.+..++.-|+
T Consensus 92 ~LTVeENL~~g~~~~~~~------------~~-----~------------------~~~~e~v~~lFP~Lker~~~~aG~ 136 (237)
T COG0410 92 RLTVEENLLLGAYARRDK------------EA-----Q------------------ERDLEEVYELFPRLKERRNQRAGT 136 (237)
T ss_pred hCcHHHHHhhhhhccccc------------cc-----c------------------cccHHHHHHHChhHHHHhcCcccC
Confidence 999999999875432110 00 0 000233333332 45556777777
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||-++|||||+++|++|+|||||.||-|.-..+|.+.++++.+..+ .+|+.+.|......+++|+.+||
T Consensus 137 -----LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g-~tIlLVEQn~~~Al~iaDr~yvl 210 (237)
T COG0410 137 -----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGG-MTILLVEQNARFALEIADRGYVL 210 (237)
T ss_pred -----CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCC-cEEEEEeccHHHHHHhhCEEEEE
Confidence 999999999999999999999999999999999999999999999987544 55666789999999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000615 418 SEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1389)
.+|++++.|+.+++..
T Consensus 211 e~Griv~~G~~~eL~~ 226 (237)
T COG0410 211 ENGRIVLSGTAAELLA 226 (237)
T ss_pred eCCEEEEecCHHHHhc
Confidence 9999999999999864
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=326.73 Aligned_cols=222 Identities=25% Similarity=0.354 Sum_probs=186.5
Q ss_pred cccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC----ceEEEecCCCCC
Q 000615 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLH 256 (1389)
Q Consensus 181 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~----~~~~yv~Q~d~~ 256 (1389)
-....+++|||+++++||+++|+||||||||||+|+|+|.++|+ +|+|.++|++++...++ ..++..+|...+
T Consensus 14 FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~---~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 14 FGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS---SGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred cCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCC---CceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 35678999999999999999999999999999999999999998 99999999999887764 468899999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
|++|||.||+..++..+.. +.......+-. .+ ..+....+..+|+.+||.+.+|+..|
T Consensus 91 F~~lTVlENv~va~~~~~~---~~~~l~~~~~~--------~~-----------e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 91 FPGLTVLENVAVGAHARLG---LSGLLGRPRAR--------KE-----------EREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred cCCCcHHHHHHHHhhhhhh---hhhhhccccch--------hh-----------HHHHHHHHHHHHHHcCCchhhcchhh
Confidence 9999999999988654421 00000000000 00 01122346779999999999999999
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
+ ||+|||||+.|||||+.+|++|+||||.+||.+..+.++.+.++++.+..+.|++ .+-|...-++++||+|+|
T Consensus 149 ~-----LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~til-lIEHdM~~Vm~l~dri~V 222 (250)
T COG0411 149 N-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL-LIEHDMKLVMGLADRIVV 222 (250)
T ss_pred c-----CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEE-EEEeccHHHhhhccEEEe
Confidence 8 9999999999999999999999999999999999999999999999875455554 456778899999999999
Q ss_pred EcCCeEEEecChhHHHH
Q 000615 417 LSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 417 L~~G~iv~~G~~~~~~~ 433 (1389)
|+.|+++.+|+++++.+
T Consensus 223 l~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 223 LNYGEVIAEGTPEEVRN 239 (250)
T ss_pred ccCCcCcccCCHHHHhc
Confidence 99999999999999864
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=352.92 Aligned_cols=206 Identities=27% Similarity=0.422 Sum_probs=177.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT---SGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999875421 2457999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+.++..+... .+ ....++.+++.+||++..++.+++
T Consensus 83 v~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 124 (302)
T TIGR01188 83 GRENLEMMGRLYGLPK----------DE------------------------AEERAEELLELFELGEAADRPVGT---- 124 (302)
T ss_pred HHHHHHHHHHHcCCCH----------HH------------------------HHHHHHHHHHHcCChhHhCCchhh----
Confidence 9999998654332110 00 012356789999999888998876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|+++++. +.|++++.|+ ..++.++||+|++|++|+
T Consensus 125 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~-g~tvi~~sH~-~~~~~~~~d~v~~l~~G~ 201 (302)
T TIGR01188 125 -YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHY-MEEADKLCDRIAIIDHGR 201 (302)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998764 6777777665 458889999999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
+++.|+++++.+
T Consensus 202 i~~~g~~~~l~~ 213 (302)
T TIGR01188 202 IIAEGTPEELKR 213 (302)
T ss_pred EEEECCHHHHHH
Confidence 999999998764
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=359.05 Aligned_cols=214 Identities=27% Similarity=0.363 Sum_probs=182.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+ +++.+|+|+|++|++||+++|+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 4 l~i~~l~~~~-------------~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p--~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAY-------------GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI--TSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEe-------------CCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEECC
Confidence 5677776544 234699999999999999999999999999999999997653 4799999998764
Q ss_pred h-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000615 935 Q-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 935 ~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 1013 (1389)
. ...++.+|||+|++.+++.+||+||+.|....+. ...++.+++++++++.++|.+..++.+ ..|||||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~~LSgGq~Q 140 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQ 140 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHH
Confidence 3 1234679999999999999999999998765432 233445567899999999988877764 479999999
Q ss_pred HHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1014 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|||++||+++ ++...+|++++|.+ |+++..|++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~-G~i~~~g~~ 218 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKP 218 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999999999999999999998765 899999999986 67888999999984 899999885
Q ss_pred C
Q 000615 1093 G 1093 (1389)
Q Consensus 1093 ~ 1093 (1389)
.
T Consensus 219 ~ 219 (369)
T PRK11000 219 L 219 (369)
T ss_pred H
Confidence 3
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=356.96 Aligned_cols=215 Identities=23% Similarity=0.355 Sum_probs=185.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..+ ++..+|+|+|+++++||+++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 19 ~l~l~~v~~~~-------------~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p--~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF-------------DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP--TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE-------------CCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 47888877543 234699999999999999999999999999999999998663 479999999876
Q ss_pred Ch-hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
.. ...+|.+|||+|++.++|++||.||+.|....+ ..+..+.+++++++++.++|.+..++. +.+||||||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~-----~~~LSgGq~ 155 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRK-----PHQLSGGQR 155 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHH
Confidence 43 234678999999999999999999999976543 233455667799999999999888876 457999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
|||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ .|.|+|++||+++ ++...+|++++|. +|+++..|+
T Consensus 156 QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~-~G~i~~~g~ 233 (377)
T PRK11607 156 QRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMN-RGKFVQIGE 233 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEe-CCEEEEEcC
Confidence 999999999999999999999999999999999999998865 4899999999986 6889999999998 489999998
Q ss_pred CC
Q 000615 1092 LG 1093 (1389)
Q Consensus 1092 ~~ 1093 (1389)
+.
T Consensus 234 ~~ 235 (377)
T PRK11607 234 PE 235 (377)
T ss_pred HH
Confidence 63
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=339.34 Aligned_cols=216 Identities=27% Similarity=0.387 Sum_probs=178.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++ ++.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER--PDSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECC
Confidence 56777766542 2469999999999999999999999999999999999765 34799999998754
Q ss_pred hh-hhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 935 QE-TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 935 ~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
.. ..++.++|++|++.+++.+||+||+.+....+.. ......+..+.++++++.++|.+..+..+ ..||||||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 142 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----AQLSGGQR 142 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHHHH
Confidence 21 2245699999999999999999999886543211 00122334456889999999987777653 47999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
|||+||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~ 220 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNK-GRIEQVGT 220 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEEecC
Confidence 9999999999999999999999999999999999999999865 899999999986 57788999999974 88998887
Q ss_pred C
Q 000615 1092 L 1092 (1389)
Q Consensus 1092 ~ 1092 (1389)
.
T Consensus 221 ~ 221 (239)
T cd03296 221 P 221 (239)
T ss_pred H
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=321.30 Aligned_cols=206 Identities=25% Similarity=0.397 Sum_probs=187.7
Q ss_pred cccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCC
Q 000615 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 875 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 954 (1389)
++.+++.+++|+||.++||+++|++|+|||||||++++|.|... +.+|.|.++|.+.++. .+.+|||+|.+.-++|.
T Consensus 10 K~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle--~~~G~I~~~g~~~~~~-~~~rIGyLPEERGLy~k 86 (300)
T COG4152 10 KSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE--PTEGEITWNGGPLSQE-IKNRIGYLPEERGLYPK 86 (300)
T ss_pred hccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCC--ccCceEEEcCcchhhh-hhhhcccChhhhccCcc
Confidence 44567889999999999999999999999999999999999876 3589999999998754 45668999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+||.|.|.|.|.+. .++.++..+.++.+|+.+++....... ++.||.|++|++.+-.+++++|++++||||+
T Consensus 87 ~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~k-----Ik~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 87 MTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKK-----IKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred CcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccch-----HHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 99999999999887 456778888899999999998887776 4689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
|||||.+.+.+.+.+.++.++|.|||+++|++. .+-++||++++|++ |+.|..|++.
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~k-G~~V~~G~v~ 215 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKK-GQTVLYGTVE 215 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecC-CceEEeccHH
Confidence 999999999999999999999999999999987 68899999999985 7888889863
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=321.80 Aligned_cols=204 Identities=26% Similarity=0.316 Sum_probs=174.1
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC----cCceEEEecCCC--CCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHD--LHHG 258 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d--~~~~ 258 (1389)
++|+|||++|.+||.++|+|+||||||||.++|+|+.+|+ +|+|.++|.+..... ..+.+-+|+||+ .+.|
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP 97 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNP 97 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCccccchhhccceeEEecCCccccCc
Confidence 6999999999999999999999999999999999999997 999999998776543 357899999997 6778
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc-cccccccC
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADTMVGD 337 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~-~~dt~vg~ 337 (1389)
..||++.|.-..+..+.+. .+..+.++++.+||+. .++...-+
T Consensus 98 ~~tv~~~l~Epl~~~~~~~------------------------------------~~~~i~~~L~~VgL~~~~l~R~P~e 141 (252)
T COG1124 98 RRTVGRILSEPLRPHGLSK------------------------------------SQQRIAELLDQVGLPPSFLDRRPHE 141 (252)
T ss_pred chhHHHHHhhhhccCCccH------------------------------------HHHHHHHHHHHcCCCHHHHhcCchh
Confidence 8999999976544322110 1122567899999984 55665544
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+|||||..+|++|++|||||+||++.+.+|++.|.++.+..+.|.++. .|...-+..+||||+||
T Consensus 142 -----LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~I-sHdl~~v~~~cdRi~Vm 215 (252)
T COG1124 142 -----LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFI-SHDLALVEHMCDRIAVM 215 (252)
T ss_pred -----cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEE-eCcHHHHHHHhhheeee
Confidence 999999999999999999999999999999999999999999999998877666655 55667899999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000615 418 SEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1389)
++|++++.++.+++..
T Consensus 216 ~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 216 DNGQIVEIGPTEELLS 231 (252)
T ss_pred eCCeEEEeechhhhhc
Confidence 9999999999999864
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=339.34 Aligned_cols=204 Identities=29% Similarity=0.403 Sum_probs=172.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh---h-hhheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE---T-FARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~---~-~~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+.... . .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 90 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR--PTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL 90 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCC
Confidence 469999999999999999999999999999999999765 3479999999875431 2 234699999999999999
Q ss_pred CHHHHHHHHHHhhcCCC-------CcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 000615 956 TVYESLLYSAWLRLSSD-------VDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~~-------~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~il 1028 (1389)
||+|++.+......... ....+..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 165 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRP-----AGELSYGQQRRLEIARALATDPKLL 165 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999988654321110 01233445688999999998776665 3579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1029 FMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1029 lLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 166 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (236)
T cd03219 166 LLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQ-GRVIAEGTP 227 (236)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEeecCH
Confidence 999999999999999999999999877999999999986 57778999999985 889888874
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-36 Score=336.12 Aligned_cols=193 Identities=31% Similarity=0.437 Sum_probs=164.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh------h-hhheeeEeccCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------T-FARVSGYCEQNDIHS 952 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~-~~~~~gyv~Q~~~~~ 952 (1389)
+.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.... . .++.++|++|++.++
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR--PTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLL 94 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC--CCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccC
Confidence 469999999999999999999999999999999999765 3479999999875321 1 245799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeC
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1032 (1389)
+.+||+||+.+....+. ......++.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||
T Consensus 95 ~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~lllLDE 166 (218)
T cd03255 95 PDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYP-----SELSGGQQQRVAIARALANDPKIILADE 166 (218)
T ss_pred CCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCHHHHHHHHHHHHHccCCCEEEEcC
Confidence 99999999998764432 222334556889999999988776653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1033 PTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1033 PTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
||+|||+.++..+.+.|+++++ .|+|||++||+++ ++ +.||++++|.+ |+
T Consensus 167 P~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~v~~l~~-G~ 217 (218)
T cd03255 167 PTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LA-EYADRIIELRD-GK 217 (218)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HH-hhhcEEEEeeC-Cc
Confidence 9999999999999999999977 5899999999976 34 48999999985 54
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=358.07 Aligned_cols=206 Identities=26% Similarity=0.382 Sum_probs=177.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++....+ ++.++||+|++.+++.+||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv 92 (369)
T PRK11000 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDIT---SGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLSV 92 (369)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCCH
Confidence 46999999999999999999999999999999999999887 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.|+.+..+.. +. +....++.+++.+||++..|+.+++
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~lgL~~~~~~~~~~----- 133 (369)
T PRK11000 93 AENMSFGLKLAGAK----------KE------------------------EINQRVNQVAEVLQLAHLLDRKPKA----- 133 (369)
T ss_pred HHHHHhHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhcCChhh-----
Confidence 99999875432210 00 0112356788999999888888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|++
T Consensus 134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i 212 (369)
T PRK11000 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV 212 (369)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998775577777776654 588899999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
+..|+++++.
T Consensus 213 ~~~g~~~~i~ 222 (369)
T PRK11000 213 AQVGKPLELY 222 (369)
T ss_pred EEEcCHHHHH
Confidence 9999998874
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=337.67 Aligned_cols=200 Identities=27% Similarity=0.337 Sum_probs=172.0
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh------hhhheeeEeccCCCCCCC
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE------TFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~------~~~~~~gyv~Q~~~~~~~ 954 (1389)
.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP--TSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSS 96 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCC
Confidence 699999999999999999999999999999999997653 479999999875421 235679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+|++||+.+....+. .......+.++++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 97 ~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~ 168 (233)
T cd03258 97 RTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAY-----PAQLSGGQKQRVGIARALANNPKVLLCDEAT 168 (233)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCC
Confidence 999999988654331 22334455688999999998877765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 169 ~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 225 (233)
T cd03258 169 SALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVME-KGEVVEEGTV 225 (233)
T ss_pred CcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEEEecCH
Confidence 999999999999999998765 899999999976 5677899999997 4899988864
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=350.96 Aligned_cols=212 Identities=23% Similarity=0.380 Sum_probs=181.8
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++..+ +++.+|+|+||++++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~--~~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY-------------GTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP--PDSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE-------------CCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcc
Confidence 5666766543 23569999999999999999999999999999999999765 34899999998754
Q ss_pred h--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 935 Q--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 935 ~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
. ...++.+||++|++.+++.+||.||+.+.+.++. .+.++..+.++++++.++|.+..++.+ +.||||||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~ 139 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKI-----GQLSKGYR 139 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCch-----hhCCHHHH
Confidence 3 2356779999999999999999999998775542 223444556899999999998887764 47999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ ++|||++||+++ ++.+.||++++|.+ |++++.|+.
T Consensus 140 qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (301)
T TIGR03522 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINK-GKIVADKKL 216 (301)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999999999999999999864 799999999986 67888999999984 899999986
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=345.70 Aligned_cols=206 Identities=23% Similarity=0.300 Sum_probs=174.2
Q ss_pred cccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hh----hhheeeEecc
Q 000615 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET----FARVSGYCEQ 947 (1389)
Q Consensus 875 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q 947 (1389)
+.++.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... .. .++.++|++|
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p--~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP--TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 345567799999999999999999999999999999999997653 47999999987532 11 1356999999
Q ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 000615 948 NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1389)
Q Consensus 948 ~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~i 1027 (1389)
++.+++.+||+||+.+..... ........+.++++++.++|.+..++.+ ..||||||||++||++|+.+|+|
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~i 181 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDI 181 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999998865432 1223344456889999999988777764 47999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1028 llLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~-~G~i~~~g~~ 245 (269)
T cd03294 182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMK-DGRLVQVGTP 245 (269)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEE-CCEEEEeCCH
Confidence 9999999999999999999999998754 899999999976 5778899999997 4899988874
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=334.38 Aligned_cols=221 Identities=36% Similarity=0.616 Sum_probs=179.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC-CceEEEEEEEcCccC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGYPK 933 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~g~~~G~i~i~g~~~ 933 (1389)
+.|+|+++..+.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +++.+|+|.++|.+.
T Consensus 4 ~~~~~~~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNW---------NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecC---------ccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 3567777654210 013579999999999999999999999999999999999754 123579999999877
Q ss_pred ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHH-HHHHcCCcccccccccCCCCCCCCHHHH
Q 000615 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE-VMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~-~l~~l~L~~~~~~~~g~~~~~~LSgGqr 1012 (1389)
.....++.++|++|++.+++.+||+||+.|..................+++ .++.+++.+..++. ++.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNL-----VKGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhccc-----ccCcCHHHH
Confidence 555566789999999999999999999998765432222122223334555 89999988776665 457999999
Q ss_pred HHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1013 qRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||+++|++..++.+.+|++++|.+ |++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~-G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSS-GEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeC-CEEEecC
Confidence 9999999999999999999999999999999999999998877999999999974468899999999985 8888765
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=338.48 Aligned_cols=201 Identities=27% Similarity=0.375 Sum_probs=171.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hh-hhheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|+++++||++||+||||||||||+++|+|..++ .+|+|.++|.+... .. .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP--DSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL 90 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccCCHhHHHhccEEEecCCccccccC
Confidence 4699999999999999999999999999999999997653 47999999987532 12 235699999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCC
Q 000615 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1035 (1389)
||+||+.+....+. ....+..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||+
T Consensus 91 tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 91 TVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSK-----ASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred cHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 99999987643321 22334445688999999998777765 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|. +|++++.|+.
T Consensus 163 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~-~G~i~~~~~~ 217 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIY-EGKVLAEGTP 217 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE-CCeEEEEeCH
Confidence 99999999999999999877999999999986 6888899999998 4889888875
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=321.36 Aligned_cols=205 Identities=28% Similarity=0.412 Sum_probs=174.6
Q ss_pred ccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCCCC
Q 000615 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIH 951 (1389)
Q Consensus 876 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~ 951 (1389)
.|++.++|++||+++++||+++|+|+|||||||||++|+|..+. .+|+|.++|.++.. +..++.++||||....
T Consensus 12 ~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~--~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~i 89 (237)
T COG0410 12 GYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP--RSGRIIFDGEDITGLPPHERARLGIAYVPEGRRI 89 (237)
T ss_pred cccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeeEEECCeecCCCCHHHHHhCCeEeCcccccc
Confidence 45668899999999999999999999999999999999997653 37999999998653 3456679999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 952 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
||.+||+|||..++..+.. ++.....++++.+.+- |.+.+++..| .|||||||.|+|||||+.+|++|+|
T Consensus 90 F~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGGEQQMLAiaRALm~~PklLLL 160 (237)
T COG0410 90 FPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGGEQQMLAIARALMSRPKLLLL 160 (237)
T ss_pred hhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChHHHHHHHHHHHHhcCCCEEEe
Confidence 9999999999988755432 1122222677888775 6677777755 6999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
||||.||-|.-.++|.+.|+++.++ |.||+++-+... ...+.+|+.++|.+ |++++.|+..
T Consensus 161 DEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~-Griv~~G~~~ 222 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLEN-GRIVLSGTAA 222 (237)
T ss_pred cCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeC-CEEEEecCHH
Confidence 9999999999999999999999866 779999998765 47788999999985 8999999864
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=347.18 Aligned_cols=244 Identities=25% Similarity=0.424 Sum_probs=198.1
Q ss_pred hcHHHHHHHHHHHhhh------cCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceE
Q 000615 113 EDNEKFLKRIRHRTDR------VGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRI 186 (1389)
Q Consensus 113 ~~~~~~~~~~~~~~~~------~~~~~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~i 186 (1389)
-|-|++++-+++..+- .....++-.+.|+|++.. +.+.+++
T Consensus 507 iDmEnmfdllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~---------------------------------Y~p~k~v 553 (790)
T KOG0056|consen 507 IDMENMFDLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFA---------------------------------YDPGKPV 553 (790)
T ss_pred hhHHHHHHHhhcCchhhcCCCCCCccccCCeEEEEEeEEe---------------------------------cCCCCce
Confidence 4666666655554442 234556678999988874 2345679
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCCCCCCCCHH
Q 000615 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
|+||||++.||+.+|++||||+||||+|++|-..++.+ +|.|++||+++.... .++.+|.||||..+|.+ |+.
T Consensus 554 l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~---sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~ 629 (790)
T KOG0056|consen 554 LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN---SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TIL 629 (790)
T ss_pred eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc---CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eee
Confidence 99999999999999999999999999999999999987 999999999987543 35789999999999965 999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC-
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG- 342 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG- 342 (1389)
.||.|+. |+...|++.+|++.++ ..| +++++++.++|.||+ ||
T Consensus 630 yNIryak-------------------------~~AsneevyaAAkAA~-----IHd---rIl~fPegY~t~VGE---RGL 673 (790)
T KOG0056|consen 630 YNIRYAK-------------------------PSASNEEVYAAAKAAQ-----IHD---RILQFPEGYNTRVGE---RGL 673 (790)
T ss_pred eheeecC-------------------------CCCChHHHHHHHHHhh-----HHH---HHhcCchhhhhhhhh---ccc
Confidence 9998862 2223333444433222 233 477899999999998 66
Q ss_pred -CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 343 -ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 343 -LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+|||+++..|.|++|||.||+||..+..+|..+|.+++. ++|.|+.-|. ..+.-.+|.|+++++|+
T Consensus 674 kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHR--LSTivnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 674 KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHR--LSTIVNADLILVISNGR 749 (790)
T ss_pred ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeee--ehheecccEEEEEeCCe
Confidence 799999999999999999999999999999999999999999999986 5566665554 35677899999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
|++.|.++|++.
T Consensus 750 IvErG~HeeLl~ 761 (790)
T KOG0056|consen 750 IVERGRHEELLK 761 (790)
T ss_pred EeecCcHHHHHh
Confidence 999999999975
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-37 Score=314.97 Aligned_cols=210 Identities=22% Similarity=0.377 Sum_probs=181.4
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1389)
+++++++|||+.+++||+++++|||||||||.+.++.|+.+|+ +|+|.+||.+++.... +..+||+||++..|
T Consensus 15 ~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d---~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIF 91 (243)
T COG1137 15 KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD---SGKILLDDEDITKLPMHKRARLGIGYLPQEASIF 91 (243)
T ss_pred CCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecC---CceEEECCcccccCChHHHhhcCcccccccchHh
Confidence 4567999999999999999999999999999999999999998 9999999999987754 34699999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
-.+||+|||.-..+.+.... .+ .+.+...+.+|+.|+|.|++|..-..
T Consensus 92 r~LtV~dNi~~vlE~~~~d~--------~~------------------------~~~~~~l~~LL~ef~i~hlr~~~a~s 139 (243)
T COG1137 92 RKLTVEDNIMAVLEIREKDL--------KK------------------------AERKEELDALLEEFHITHLRDSKAYS 139 (243)
T ss_pred hcCcHHHHHHHHHhhhhcch--------hH------------------------HHHHHHHHHHHHHhchHHHhcCcccc
Confidence 99999999976544321100 00 01123467899999999999988766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
||||||+|+.|||||+.+|+.++||||++|+||-+..+|.+.++.+++ .|..++++- |...|+..++||.+++
T Consensus 140 -----LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITD-HNVREtL~i~dRaYIi 212 (243)
T COG1137 140 -----LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITD-HNVRETLDICDRAYII 212 (243)
T ss_pred -----cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEcc-ccHHHHHhhhheEEEE
Confidence 999999999999999999999999999999999999999999999987 466666665 5567999999999999
Q ss_pred cCCeEEEecChhHHHH
Q 000615 418 SEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1389)
++|++..+|+++++.+
T Consensus 213 ~~G~vla~G~p~ei~~ 228 (243)
T COG1137 213 SDGKVLAEGSPEEIVN 228 (243)
T ss_pred ecCeEEecCCHHHHhc
Confidence 9999999999999864
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=333.21 Aligned_cols=192 Identities=30% Similarity=0.402 Sum_probs=163.3
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCC-CCCCCCHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDI-HSPYVTVY 958 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~-~~~~lTv~ 958 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+......++.++|++|++. .+..+||+
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 90 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK--ESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVR 90 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHH
Confidence 469999999999999999999999999999999999765 347999999987654445667999999974 34467999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+..... . . ..+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 91 EELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred HHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 9998754322 1 1 1245789999999988777764 5799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLAN-GAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEC
Confidence 99999999999999777999999999986 56678999999985 6653
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=359.55 Aligned_cols=217 Identities=29% Similarity=0.368 Sum_probs=182.7
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+ +++.+|+|+||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.+..
T Consensus 4 L~~~nls~~y-------------~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~--p~sG~I~l~G~~i~ 68 (402)
T PRK09536 4 IDVSDLSVEF-------------GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT--PTAGTVLVAGDDVE 68 (402)
T ss_pred EEEeeEEEEE-------------CCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEEcC
Confidence 5677776543 34579999999999999999999999999999999999765 34799999998754
Q ss_pred h---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
. ..+++.+|||+|++.+++.+||+|++.+....... .....++.++.++++++.+++.+..++.+ +.||||
T Consensus 69 ~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~-----~~LSgG 143 (402)
T PRK09536 69 ALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV-----TSLSGG 143 (402)
T ss_pred cCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHH
Confidence 3 44567899999999999999999999886432110 01012234466899999999998888764 579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||||+.|||+|+++|+||||||||+|||+.++..+++.|++++++|+|||+++|+++ ++.+.||++++|++ |++++.|
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~-G~iv~~G 221 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD-GRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEec
Confidence 999999999999999999999999999999999999999999877999999999987 57789999999984 8999999
Q ss_pred CCC
Q 000615 1091 PLG 1093 (1389)
Q Consensus 1091 ~~~ 1093 (1389)
+..
T Consensus 222 ~~~ 224 (402)
T PRK09536 222 PPA 224 (402)
T ss_pred CHH
Confidence 864
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=336.82 Aligned_cols=202 Identities=26% Similarity=0.324 Sum_probs=170.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCC-----CCceEEEEEEEcCccCCh-----hhhhheeeEeccCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-----TGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQND 949 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~-----~~g~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~ 949 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|.. . +.+|+|.++|.+... ...++.++|++|++
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 90 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA--PDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKP 90 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC--CCCeEEEECCEEhhhcchHHHHHHhhEEEEecCc
Confidence 46999999999999999999999999999999999976 4 357999999987532 23456799999999
Q ss_pred CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCce
Q 000615 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1389)
Q Consensus 950 ~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1029 (1389)
.++ .+||+||+.+....+.. ....+.+++++++++.+++.+..+.... +..||||||||++||++|+.+|++|+
T Consensus 91 ~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~LSgG~~qrv~la~al~~~p~lll 164 (227)
T cd03260 91 NPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLH---ALGLSGGQQQRLCLARALANEPEVLL 164 (227)
T ss_pred hhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCC---cccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 887 79999999886543311 1122234568899999999876655421 25799999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1030 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||||+|||+.++..+.+.|++++++ +|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 165 lDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 224 (227)
T cd03260 165 LDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLN-GRLVEFGPT 224 (227)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEecCc
Confidence 99999999999999999999999876 99999999976 56778999999985 899988875
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=345.32 Aligned_cols=218 Identities=21% Similarity=0.324 Sum_probs=178.8
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~y~~~--------~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13637 3 IKIENLTHIYMEG--------TPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP--TSGKIIIDGVDIT 72 (287)
T ss_pred EEEEEEEEECCCC--------CccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CccEEEECCEECC
Confidence 5677877655310 00124699999999999999999999999999999999997653 4899999998764
Q ss_pred h-----hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc--ccccccccCCCCCC
Q 000615 935 Q-----ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK--SLNDSMVGLPGVSG 1006 (1389)
Q Consensus 935 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~--~~~~~~~g~~~~~~ 1006 (1389)
. ...++.+|||+|++. .+...||+||+.|..... ....++..+.++++++.++|. +..++. +..
T Consensus 73 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~~~ 144 (287)
T PRK13637 73 DKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS-----PFE 144 (287)
T ss_pred CcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC-----ccc
Confidence 3 245678999999974 334579999998865432 234455566789999999996 556655 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
||||||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++.+.||++++|.+ |+
T Consensus 145 LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~-G~ 222 (287)
T PRK13637 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNK-GK 222 (287)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999999765 899999999976 56678999999985 89
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13637 223 CELQGTP 229 (287)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-36 Score=336.72 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=172.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-----hhhhheeeEeccCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 954 (1389)
+.+|+|+|+++++||++||+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE--ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPH 91 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCChhHHHHhhceEEEecccccCCC
Confidence 469999999999999999999999999999999999765 347999999987542 2345679999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+||+||+.+...... .....+..+.+.++++.++|.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 92 ~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 92 LTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHY-----PSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 999999987542111 122344456688999999998777765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|++ |++++.|+.
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK-GRIAEDGDP 220 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeCCH
Confidence 999999999999999999877999999999986 56678999999985 899998875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-36 Score=332.12 Aligned_cols=195 Identities=30% Similarity=0.427 Sum_probs=167.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCCCHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
+.+|+|+||++++|++++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 90 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK--PDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTAR 90 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCCcccchHHHHhhEEEecCCCccCccCcHH
Confidence 469999999999999999999999999999999999765 348999999987542 23456799999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+....+. . .++.++++++.+++.+..++.+ ..|||||||||+||++|+.+|++|+|||||+|||
T Consensus 91 e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 158 (208)
T cd03268 91 ENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKV-----KGFSLGMKQRLGIALALLGNPDLLILDEPTNGLD 158 (208)
T ss_pred HHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCC
Confidence 99988654321 1 1245788999999988777663 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1039 ARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
+.++..+.+.|++++++|+|||++||++. ++.+.+|++++|.+ |++++.|
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-g~i~~~g 208 (208)
T cd03268 159 PDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINK-GKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 99999999999998877899999999976 56678999999985 7887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=334.16 Aligned_cols=217 Identities=26% Similarity=0.360 Sum_probs=177.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++.. ...+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 73 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT--PTSGDVIFNGQPM 73 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEc
Confidence 36788887655210 001469999999999999999999999999999999999765 3589999999875
Q ss_pred Chh------hh-hheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000615 934 NQE------TF-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1389)
Q Consensus 934 ~~~------~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 1006 (1389)
... .. ++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.++|.+..+.. +..
T Consensus 74 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~ 145 (233)
T PRK11629 74 SKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR-----PSE 145 (233)
T ss_pred CcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----hhh
Confidence 421 12 256999999999999999999998865432 122334456789999999998777665 357
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
||||||||++||++|+.+|+||||||||+|||+.++..+.+.|+++++ .|+|||++||+++ ..+.+|++++|. +|+
T Consensus 146 LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~--~~~~~~~~~~l~-~G~ 222 (233)
T PRK11629 146 LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ--LAKRMSRQLEMR-DGR 222 (233)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhhCEEEEEE-CCE
Confidence 999999999999999999999999999999999999999999999875 5899999999975 345578999987 589
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
+++.+++
T Consensus 223 i~~~~~~ 229 (233)
T PRK11629 223 LTAELSL 229 (233)
T ss_pred EEEEecc
Confidence 9988875
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-36 Score=338.36 Aligned_cols=214 Identities=26% Similarity=0.376 Sum_probs=178.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++ ++.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (250)
T PRK11264 4 IEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP--EAGTIRVGDITID 68 (250)
T ss_pred EEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEcc
Confidence 56777776542 24699999999999999999999999999999999997653 4799999998653
Q ss_pred h-----------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000615 935 Q-----------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003 (1389)
Q Consensus 935 ~-----------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 1003 (1389)
. ...++.++|++|++.+++.+||.||+.+...... ....+...+.++++++.++|.+..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~----- 141 (250)
T PRK11264 69 TARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSY----- 141 (250)
T ss_pred ccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCC-----
Confidence 1 2345679999999999999999999987543211 122334456688999999998776665
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+
T Consensus 142 ~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~- 219 (250)
T PRK11264 142 PRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQ- 219 (250)
T ss_pred hhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEEC-
Confidence 4579999999999999999999999999999999999999999999999877999999999976 57778999999985
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 220 G~i~~~~~~ 228 (250)
T PRK11264 220 GRIVEQGPA 228 (250)
T ss_pred CEEEEeCCH
Confidence 899988874
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=339.18 Aligned_cols=204 Identities=30% Similarity=0.373 Sum_probs=170.3
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 91 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE--PTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIE 91 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccc
Confidence 469999999999999999999999999999999999765 347999999987542 234567999999999999
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 000615 954 YVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~il 1028 (1389)
.+||+||+.+..... ...........+.+.++++.++|.+..+.. +..|||||||||+||++|+.+|+||
T Consensus 92 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~ll 166 (241)
T cd03256 92 RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQR-----ADQLSGGQQQRVAIARALMQQPKLI 166 (241)
T ss_pred cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999998753210 000111123345688899999998776665 3579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1029 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 167 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 229 (241)
T cd03256 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKD-GRIVFDGPP 229 (241)
T ss_pred EEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeecCH
Confidence 999999999999999999999999764 899999999986 57778999999985 899988875
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=351.05 Aligned_cols=206 Identities=30% Similarity=0.417 Sum_probs=176.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
+.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.+||++|++.+++.+|
T Consensus 54 ~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~---~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~t 130 (340)
T PRK13536 54 KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFT 130 (340)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---ceEEEECCEECCcchHHHhccEEEEeCCccCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999876432 2467999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.|.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 131 v~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~ll~~~~L~~~~~~~~~~---- 172 (340)
T PRK13536 131 VRENLLVFGRYFGMS----------TR----------E--------------IEAVIPSLLEFARLESKADARVSD---- 172 (340)
T ss_pred HHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCchhhCCChhh----
Confidence 999998754332210 00 0 011245678899999999999877
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+++|++++|||||+|||+.++.++.+.|+++++ .+.|++++.|+ ..++.++||+|++|++|+
T Consensus 173 -LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~-l~e~~~~~d~i~il~~G~ 249 (340)
T PRK13536 173 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHF-MEEAERLCDRLCVLEAGR 249 (340)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 46777777655 568999999999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
++++|+.+++.+
T Consensus 250 i~~~g~~~~l~~ 261 (340)
T PRK13536 250 KIAEGRPHALID 261 (340)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=331.88 Aligned_cols=192 Identities=29% Similarity=0.380 Sum_probs=164.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT--PSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLP 92 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhcc
Confidence 469999999999999999999999999999999999765 347999999987542 124567999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
.+||.||+.+....+. ...+..++.++++++.+++.+..++. +..||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~lllLDEP 164 (214)
T TIGR02673 93 DRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAF-----PEQLSGGEQQRVAIARAIVNSPPLLLADEP 164 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCC-----hhhCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 9999999988754321 22333456788999999998766665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
|+|||+.++..+.+.|+++.++|+|||++||+++ ++...||++++|.+
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~ 212 (214)
T TIGR02673 165 TGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDD 212 (214)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecC
Confidence 9999999999999999998777999999999986 57778999999975
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=331.76 Aligned_cols=194 Identities=26% Similarity=0.375 Sum_probs=166.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ...++.++|++|++.+++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL--PTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLP 91 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhcc
Confidence 469999999999999999999999999999999999755 347999999986532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
.+|++||+.+....+. ...++..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+||||
T Consensus 92 ~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 163 (214)
T cd03292 92 DRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRAL-----PAELSGGEQQRVAIARAIVNSPTILIADEP 163 (214)
T ss_pred CCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999988654332 22344455688999999998776665 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
|+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |+
T Consensus 164 t~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~-G~ 213 (214)
T cd03292 164 TGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALER-GK 213 (214)
T ss_pred CCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 9999999999999999999777999999999976 56667999999975 54
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=351.75 Aligned_cols=206 Identities=26% Similarity=0.364 Sum_probs=176.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++.++
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~ 94 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPT---SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLL 94 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccC
Confidence 56999999999999999999999999999999999999987 9999999998865432 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.+.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 95 ~~~tv~eni~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~ 140 (343)
T PRK11153 95 SSRTVFDNVALPLELAGTP----------KA----------E--------------IKARVTELLELVGLSDKADRYPAQ 140 (343)
T ss_pred CCCcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCchhhhCChhh
Confidence 9999999999864432210 00 0 012356688999999888888876
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|+. .++.++||+|++|
T Consensus 141 -----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l 214 (343)
T PRK11153 141 -----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVI 214 (343)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999775577877776655 5788899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 215 DAGRLVEQGTVSEVF 229 (343)
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999998874
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=323.11 Aligned_cols=210 Identities=28% Similarity=0.375 Sum_probs=182.1
Q ss_pred cccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCCC
Q 000615 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI 950 (1389)
Q Consensus 875 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~ 950 (1389)
+..+...+++|||+++++||++||+||||||||||+|+|+|...+ .+|+|.++|.++.. ...+..++..+|...
T Consensus 12 k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P--~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r 89 (250)
T COG0411 12 KRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP--SSGTVIFRGRDITGLPPHRIARLGIARTFQITR 89 (250)
T ss_pred eecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccC--CCceEEECCcccCCCCHHHHHhccceeeccccc
Confidence 345678899999999999999999999999999999999997663 47999999998653 223456888999999
Q ss_pred CCCCCCHHHHHHHHHHhhc--------CC-CCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHH
Q 000615 951 HSPYVTVYESLLYSAWLRL--------SS-DVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021 (1389)
Q Consensus 951 ~~~~lTv~E~l~f~~~lr~--------~~-~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL 1021 (1389)
+|+.|||.||+..++..+. +. ....++..+++.++|+.+||.+.+|...| +||+||||||.|||||
T Consensus 90 lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~-----~LsyG~qR~LEIArAL 164 (250)
T COG0411 90 LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG-----NLSYGQQRRLEIARAL 164 (250)
T ss_pred ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-----cCChhHhHHHHHHHHH
Confidence 9999999999988754331 11 11345566778999999999999999865 6999999999999999
Q ss_pred hhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1022 ~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+.+|++|+||||.+||.+.....+.+.|+++.++ |.||++|-|+++ -+...||++++|.. |+++..|++.
T Consensus 165 a~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl~~-G~~IAeG~P~ 235 (250)
T COG0411 165 ATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVLNY-GEVIAEGTPE 235 (250)
T ss_pred hcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEeccC-CcCcccCCHH
Confidence 9999999999999999999999999999999874 699999999998 48999999999985 8999999874
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=379.03 Aligned_cols=209 Identities=28% Similarity=0.439 Sum_probs=175.5
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1389)
++++|+|+|++++|||.+||+||+|||||||+++|.|+++|+ +|+|.+||+++++... ++.++||+|++.+|.
T Consensus 341 ~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~---~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~- 416 (567)
T COG1132 341 KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPT---SGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS- 416 (567)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCC---CCeEEECCEehhhcCHHHHHHhccEEcccceeec-
Confidence 456999999999999999999999999999999999999997 9999999999987764 578999999999997
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
.||+|||.++.. +...++..+++..++. .|. ...|++++||.||+ .
T Consensus 417 ~TI~~NI~~g~~-------------------------~at~eei~~a~k~a~~-----~d~---I~~lp~g~dt~vge-~ 462 (567)
T COG1132 417 GTIRENIALGRP-------------------------DATDEEIEEALKLANA-----HEF---IANLPDGYDTIVGE-R 462 (567)
T ss_pred ccHHHHHhcCCC-------------------------CCCHHHHHHHHHHhCh-----HHH---HHhCcccccceecC-C
Confidence 799999998632 1122333444443321 122 22368899999994 5
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
+..||||||||++||||++.+|+||+||||||+||+.+...|.+.++++.+ ++|+++..|.+ .+...+|+|+||++
T Consensus 463 G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl--sti~~aD~IiVl~~ 538 (567)
T COG1132 463 GVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL--STIKNADRIIVLDN 538 (567)
T ss_pred CccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH--hHHHhCCEEEEEEC
Confidence 666999999999999999999999999999999999999999999997764 56888866655 45566999999999
Q ss_pred CeEEEecChhHHHH
Q 000615 420 GQIVYQGPRDNVLE 433 (1389)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1389)
|++++.|+++|++.
T Consensus 539 G~i~e~G~h~eLl~ 552 (567)
T COG1132 539 GRIVERGTHEELLA 552 (567)
T ss_pred CEEEEecCHHHHHH
Confidence 99999999999976
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=341.00 Aligned_cols=214 Identities=27% Similarity=0.369 Sum_probs=178.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++ ++..+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~------------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 70 (274)
T PRK13647 5 IEVEDLHFRYK------------DGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP--QRGRVKVMGREVN 70 (274)
T ss_pred EEEEEEEEEeC------------CCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CceEEEECCEECC
Confidence 67788876542 123599999999999999999999999999999999997653 4799999998764
Q ss_pred h---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
. ...++.+||++|++. .++..||.||+.|..... .....+..+.++++++.++|.+..++.+ ..||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgG 142 (274)
T PRK13647 71 AENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP-----YHLSYG 142 (274)
T ss_pred CCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh-----hhCCHH
Confidence 2 334567999999973 445689999998864321 2333444556899999999988777764 479999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ ++.+.||++++|++ |++++.|
T Consensus 143 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~g 220 (274)
T PRK13647 143 QKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE-GRVLAEG 220 (274)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEC
Confidence 999999999999999999999999999999999999999999877999999999976 46678999999974 8999988
Q ss_pred CC
Q 000615 1091 PL 1092 (1389)
Q Consensus 1091 ~~ 1092 (1389)
+.
T Consensus 221 ~~ 222 (274)
T PRK13647 221 DK 222 (274)
T ss_pred CH
Confidence 75
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=332.11 Aligned_cols=200 Identities=26% Similarity=0.411 Sum_probs=171.3
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 92 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR--PTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTV 92 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCH
Confidence 569999999999999999999999999999999999765 347999999987542 3345679999999999899999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
+||+.+....+. ....+..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 93 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEP~~~L 164 (220)
T cd03263 93 REHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164 (220)
T ss_pred HHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChh-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 999988654332 223334456889999999987777653 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 165 D~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~ 216 (220)
T cd03263 165 DPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSD-GKLRCIGSP 216 (220)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999999875 699999999986 56678999999975 889888864
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=337.05 Aligned_cols=200 Identities=29% Similarity=0.419 Sum_probs=170.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+.++|++|++.+++.+||.|
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~--~~~~~~~v~q~~~~~~~~tv~e 89 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP--YQHGSITLDGKPVEG--PGAERGVVFQNEGLLPWRNVQD 89 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCC--CCCcEEEEeCCCccCCCCcHHH
Confidence 469999999999999999999999999999999999765 347999999987642 2345899999999899999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
|+.+....+ .....+..+.+.++++.++|.+..+.. +..|||||||||+||++|+.+|++|+|||||+|||+
T Consensus 90 ~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~ 161 (255)
T PRK11248 90 NVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRY-----IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161 (255)
T ss_pred HHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 998764432 122334455689999999998776665 357999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEecCC
Q 000615 1040 RAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPL 1092 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~~~~~g~~ 1092 (1389)
.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|.+ +|+++..++.
T Consensus 162 ~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 162 FTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecC
Confidence 999999999999854 5899999999986 57788999999984 5899888764
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-36 Score=329.99 Aligned_cols=200 Identities=32% Similarity=0.449 Sum_probs=168.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 13 VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD---SGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 46999999999999999999999999999999999999887 9999999998764332 4579999999999989999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.++....+.. .. + ....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03259 90 AENIAFGLKLRGVP----------KA----------E--------------IRARVRELLELVGLEGLLNRYPHE----- 130 (213)
T ss_pred HHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhcChhh-----
Confidence 99998754321100 00 0 011345678899999888888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|+|++|++|++
T Consensus 131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i 209 (213)
T cd03259 131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765467777776654 578899999999999999
Q ss_pred EEec
Q 000615 423 VYQG 426 (1389)
Q Consensus 423 v~~G 426 (1389)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03259 210 VQVG 213 (213)
T ss_pred EecC
Confidence 8765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=305.61 Aligned_cols=205 Identities=25% Similarity=0.382 Sum_probs=176.5
Q ss_pred CCcccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecC
Q 000615 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQ 252 (1389)
Q Consensus 179 ~~~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q 252 (1389)
.+....++|+|||+.|++||++-|+||||||||||||+|.+...|+ +|+|.+||+++.... .+|.+|+|+|
T Consensus 10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQ 86 (223)
T COG2884 10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQ 86 (223)
T ss_pred hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEee
Confidence 4445567999999999999999999999999999999999999987 999999999986553 2589999999
Q ss_pred CCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccc
Q 000615 253 HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICAD 332 (1389)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~d 332 (1389)
+..+++..||.||++|..+..|... .+.+.++..+|+..||.+.++
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~----------------------------------~~i~~rV~~~L~~VgL~~k~~ 132 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPP----------------------------------REIRRRVSEVLDLVGLKHKAR 132 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCH----------------------------------HHHHHHHHHHHHHhccchhhh
Confidence 9999999999999999887765431 112345677899999999998
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
...-+ |||||||||+||||++.+|++|+-||||-+||+..+.+|++.+.++.+ .|+||+++.|. ..-+-.+-.
T Consensus 133 ~lP~~-----LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~ 205 (223)
T COG2884 133 ALPSQ-----LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRH 205 (223)
T ss_pred cCccc-----cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccC
Confidence 88766 999999999999999999999999999999999999999999999876 57888887654 434556667
Q ss_pred eEEEEcCCeEEEecC
Q 000615 413 DIILLSEGQIVYQGP 427 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~ 427 (1389)
+++.|++|+++....
T Consensus 206 rvl~l~~Grl~~d~~ 220 (223)
T COG2884 206 RVLALEDGRLVRDES 220 (223)
T ss_pred cEEEEeCCEEEeccc
Confidence 999999999987543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=363.20 Aligned_cols=216 Identities=28% Similarity=0.439 Sum_probs=178.9
Q ss_pred ccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEE
Q 000615 849 PFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKI 928 (1389)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i 928 (1389)
+.....++|+|++|.++. +...+|+|+|++|+|||.+||+|+||||||||+|+|+|... +.+|+|.+
T Consensus 466 ~~~~g~I~~~nvsf~y~~-----------~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~--p~~G~I~~ 532 (709)
T COG2274 466 PKLQGEIEFENVSFRYGP-----------DDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK--PQQGRILL 532 (709)
T ss_pred cccCceEEEEEEEEEeCC-----------CCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEE
Confidence 444567999999998753 22369999999999999999999999999999999999876 35899999
Q ss_pred cCccC---ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------cccc
Q 000615 929 SGYPK---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSM 998 (1389)
Q Consensus 929 ~g~~~---~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~ 998 (1389)
||++. +...+|+.+|||+|++.++. -|++||+.++. .+.+.+ .+.++++..|..+. .|+.
T Consensus 533 dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~-----p~~~~e----~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 533 DGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGN-----PEATDE----EIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCC-----CCCCHH----HHHHHHHHhCcHHHHHhcccccccc
Confidence 99985 45678999999999998864 59999998753 222222 24445555444332 3555
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEE
Q 000615 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1389)
Q Consensus 999 ~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1389)
+|.. ..+||||||||++|||||+++|+||+||||||+||+.+++.|++.|++.. .|+|+|+++|+++ ..+.+|+++
T Consensus 603 v~E~-G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~-~~~T~I~IaHRl~--ti~~adrIi 678 (709)
T COG2274 603 VGEG-GANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQIL-QGRTVIIIAHRLS--TIRSADRII 678 (709)
T ss_pred cccC-CCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHh-cCCeEEEEEccch--HhhhccEEE
Confidence 6643 45799999999999999999999999999999999999999999999986 5899999999975 688999999
Q ss_pred EEecCcEEEEecCC
Q 000615 1079 LLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1079 ~l~~gG~~~~~g~~ 1092 (1389)
+|+ +|+++..|+.
T Consensus 679 Vl~-~Gkiv~~gs~ 691 (709)
T COG2274 679 VLD-QGKIVEQGSH 691 (709)
T ss_pred Ecc-CCceeccCCH
Confidence 998 5899999985
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=344.27 Aligned_cols=218 Identities=23% Similarity=0.316 Sum_probs=178.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++.. ......+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~~~ 72 (305)
T PRK13651 3 IKVKNIVKIFNKK--------LPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP--DTGTIEWIFKDEK 72 (305)
T ss_pred EEEEEEEEEECCC--------CCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC--CCcEEEEeceecc
Confidence 6778888766311 00113599999999999999999999999999999999997653 4799999876431
Q ss_pred ---------------------------hhhhhheeeEeccCC-CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHH
Q 000615 935 ---------------------------QETFARVSGYCEQND-IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986 (1389)
Q Consensus 935 ---------------------------~~~~~~~~gyv~Q~~-~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l 986 (1389)
....++.+|||+|++ ..+...||+|++.|..... ..+.++..+++.+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred cccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 123467799999986 2344579999998865432 234455566789999
Q ss_pred HHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Q 000615 987 ELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1389)
Q Consensus 987 ~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1065 (1389)
+.+||. +..++. +..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+.|+|||++||+
T Consensus 150 ~~~gL~~~~~~~~-----~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRS-----PFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 566665 45799999999999999999999999999999999999999999999998779999999999
Q ss_pred ccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1066 PSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1066 ~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
++ ++.+.+|++++|.+ |++++.|+.
T Consensus 225 ~~-~~~~~adrv~vl~~-G~i~~~g~~ 249 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKD-GKIIKDGDT 249 (305)
T ss_pred HH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 76 57788999999974 899999985
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=338.95 Aligned_cols=215 Identities=21% Similarity=0.300 Sum_probs=179.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA--PDHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEc
Confidence 367888876542 3469999999999999999999999999999999999765 3479999999875
Q ss_pred Ch------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000615 934 NQ------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1389)
Q Consensus 934 ~~------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 1007 (1389)
.. ...++.++|++|++.+++.+||.||+.+...... ....+...+.+.++++.++|.+..+..+ ..|
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L 144 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMP-----SEL 144 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence 32 1235679999999999999999999987543211 1223334456788999999988777763 579
Q ss_pred CHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1008 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|. +|++
T Consensus 145 SgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~-~G~i 222 (269)
T PRK11831 145 SGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVA-DKKI 222 (269)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEE-CCEE
Confidence 999999999999999999999999999999999999999999998765 899999999976 5778899999997 4899
Q ss_pred EEecCC
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~g~~ 1092 (1389)
++.|+.
T Consensus 223 ~~~g~~ 228 (269)
T PRK11831 223 VAHGSA 228 (269)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=343.20 Aligned_cols=218 Identities=24% Similarity=0.296 Sum_probs=178.2
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++... .....+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 72 (290)
T PRK13634 3 ITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP--TSGTVTIGERVIT 72 (290)
T ss_pred EEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 57788887663110 0114599999999999999999999999999999999997653 4799999998763
Q ss_pred -------hhhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000615 935 -------QETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1389)
Q Consensus 935 -------~~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 1005 (1389)
....++.+|||+|++. .+...||+||+.|..... ..+.++..+.++++++.++|. +..++. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (290)
T PRK13634 73 AGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARS-----PF 144 (290)
T ss_pred cccccchHHHHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCC-----cc
Confidence 1235567999999863 233479999998875322 233444456789999999996 556665 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ ++.+.+|++++|. +|
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~-~G 222 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMH-KG 222 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999986 5778899999997 58
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 223 ~i~~~g~~ 230 (290)
T PRK13634 223 TVFLQGTP 230 (290)
T ss_pred EEEEECCH
Confidence 99999875
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=338.37 Aligned_cols=204 Identities=26% Similarity=0.310 Sum_probs=169.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIE 92 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccc
Confidence 469999999999999999999999999999999999765 347999999987532 124567999999999999
Q ss_pred CCCHHHHHHHHHHhh-----cCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 000615 954 YVTVYESLLYSAWLR-----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr-----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~il 1028 (1389)
.+||+||+.+..... ........+.++++.++++.++|.+..+.. +..||||||||++||++|+.+|++|
T Consensus 93 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~la~al~~~p~ll 167 (243)
T TIGR02315 93 RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQR-----ADQLSGGQQQRVAIARALAQQPDLI 167 (243)
T ss_pred cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999997642110 000111223345688999999998776665 3579999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1029 FMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1029 lLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.||++++|.+ |++++.|+.
T Consensus 168 llDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 230 (243)
T TIGR02315 168 LADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKA-GEIVFDGAP 230 (243)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEEC-CEEEecCCH
Confidence 999999999999999999999998754 899999999976 56678999999985 889888875
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-36 Score=336.24 Aligned_cols=201 Identities=26% Similarity=0.373 Sum_probs=171.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhhheeeEeccCCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP--TSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMT 91 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCeEcCcCChHHhhcceEEEccCccccCCCc
Confidence 4699999999999999999999999999999999997653 47999999987532 334567999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc--cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS--LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~--~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
|+||+.+...++. ...+...+.+.++++.+++.+ ..+.. +..|||||||||+||++|+.+|++|+|||||
T Consensus 92 v~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 163 (242)
T cd03295 92 VEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRY-----PHELSGGQQQRVGVARALAADPPLLLMDEPF 163 (242)
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988654331 223344566889999999985 55554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 220 (242)
T cd03295 164 GALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKN-GEIVQVGTP 220 (242)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999765 899999999986 57788999999985 889988874
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=330.36 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=172.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 13 FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT---SGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 46999999999999999999999999999999999999887 999999998775321 2357999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+.....+.. .. +....++.+++.+||++..++.+++
T Consensus 90 v~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (220)
T cd03265 90 GWENLYIHARLYGVP----------GA------------------------ERRERIDELLDFVGLLEAADRLVKT---- 131 (220)
T ss_pred HHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChhh----
Confidence 999998864322110 00 0112356788999999888888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.+++|+|++|.+|+
T Consensus 132 -LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~-~~~~~~~~d~i~~l~~G~ 209 (220)
T cd03265 132 -YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHY-MEEAEQLCDRVAIIDHGR 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999876546677776655 457888999999999999
Q ss_pred EEEecChhHH
Q 000615 422 IVYQGPRDNV 431 (1389)
Q Consensus 422 iv~~G~~~~~ 431 (1389)
++..|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03265 210 IIAEGTPEEL 219 (220)
T ss_pred EEEeCChHHc
Confidence 9999987763
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=333.81 Aligned_cols=210 Identities=30% Similarity=0.440 Sum_probs=174.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 15 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 15 FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPD---SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 46999999999999999999999999999999999999887 9999999998764432 3579999999999989999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.++....+...+ .+.. +....++.+++.+||++..++.+++
T Consensus 92 ~e~l~~~~~~~~~~~~-----------------~~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T cd03296 92 FDNVAFGLRVKPRSER-----------------PPEA-------------EIRAKVHELLKLVQLDWLADRYPAQ----- 136 (239)
T ss_pred HHHHhhhhhhcccccc-----------------CCHH-------------HHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 9999886432211000 0000 0011346678899998878888776
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 137 LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i 215 (239)
T cd03296 137 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRI 215 (239)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999765567888877765 477889999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (239)
T cd03296 216 EQVGTPDEVY 225 (239)
T ss_pred EEecCHHHHh
Confidence 9999988763
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=341.91 Aligned_cols=218 Identities=25% Similarity=0.357 Sum_probs=179.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++.. ....+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.++.
T Consensus 2 i~~~~v~~~y~~~--------~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i~ 71 (288)
T PRK13643 2 IKFEKVNYTYQPN--------SPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP--TEGKVTVGDIVVS 71 (288)
T ss_pred EEEEEEEEEeCCC--------CcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 5678888766310 00113599999999999999999999999999999999997653 4799999998753
Q ss_pred -------hhhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000615 935 -------QETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1389)
Q Consensus 935 -------~~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 1004 (1389)
...+++.+|||+|++ .+++ .||.|++.|..... ..+.++.++++.++++.++|. +..+.. +
T Consensus 72 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~ 142 (288)
T PRK13643 72 STSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKS-----P 142 (288)
T ss_pred cccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCC-----c
Confidence 123567899999986 3444 69999999875432 233455566789999999995 455554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |
T Consensus 143 ~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~-G 220 (288)
T PRK13643 143 FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEK-G 220 (288)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999976 57788999999985 8
Q ss_pred EEEEecCCC
Q 000615 1085 RVIYAGPLG 1093 (1389)
Q Consensus 1085 ~~~~~g~~~ 1093 (1389)
++++.|+..
T Consensus 221 ~i~~~g~~~ 229 (288)
T PRK13643 221 HIISCGTPS 229 (288)
T ss_pred EEEEECCHH
Confidence 999999853
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=328.37 Aligned_cols=197 Identities=35% Similarity=0.513 Sum_probs=167.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|+|+++++| ++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP--PSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTV 89 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCCccccchHHHHhheEEecCCCcccccCCH
Confidence 46999999999999 999999999999999999999765 347999999987532 2346779999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
.||+.+....+. ...++..+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 90 ~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 161 (211)
T cd03264 90 REFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKI-----GSLSGGMRRRVGIAQALVGDPSILIVDEPTAGL 161 (211)
T ss_pred HHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 999988655432 222333456889999999987777653 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
|+.++..+.+.|+++++ +.|||+++|++. ++.+.+|++++|++ |++++.|
T Consensus 162 D~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~-g~i~~~g 211 (211)
T cd03264 162 DPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNK-GKLVFEG 211 (211)
T ss_pred CHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 99999999999999976 599999999976 46678999999985 7887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=329.46 Aligned_cols=195 Identities=25% Similarity=0.360 Sum_probs=166.1
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-----hhhhheeeEeccCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 954 (1389)
+.+|+++|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE--PDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPH 90 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCccchhHHHHHhcceEEecccccCCC
Confidence 469999999999999999999999999999999999765 347999999987531 2346789999999999999
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+|+.||+.+...... ....++..+.++++++.+++.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 91 ~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 91 LTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAY-----PAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred CcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhC-----ccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987642111 122334455688999999998776765 3579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~-g~ 212 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD-GR 212 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC-Cc
Confidence 999999999999999999877999999999986 56778999999985 54
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=339.06 Aligned_cols=208 Identities=24% Similarity=0.324 Sum_probs=175.9
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD 254 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d 254 (1389)
...++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 35 ~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 35 GQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPT---SGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred CCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 3467999999999999999999999999999999999999887 8999999998764321 24699999999
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 334 (1389)
.+++.+||+||+.+.....+.. .. + ....++.+++.+||++..++.
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~ 157 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVP----------RA----------E--------------REERAAEALELVGLEGWEHKY 157 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhhCC
Confidence 9999999999998864322110 00 0 011346678899999888888
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++
T Consensus 158 ~~~-----LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v 231 (269)
T cd03294 158 PDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRI 231 (269)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEE
Confidence 876 9999999999999999999999999999999999999999999998765567877776654 4788999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000615 415 ILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (1389)
++|++|++++.|+++++.
T Consensus 232 ~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 232 AIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=341.50 Aligned_cols=218 Identities=26% Similarity=0.393 Sum_probs=177.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-----cCceEEEecCCCC-CC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 257 (1389)
+++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++||+|++. .+
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 96 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT---SGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL 96 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ccEEEECCEECCCcCccHHHHhhceEEEecCchhcc
Confidence 46999999999999999999999999999999999999987 999999999986532 2467999999863 33
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc--ccccccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD--ICADTMV 335 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~--~~~dt~v 335 (1389)
...||+||+.|+....+.. +. +....++++++.+||+ +..|+.+
T Consensus 97 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~ 142 (287)
T PRK13637 97 FEETIEKDIAFGPINLGLS----------EE------------------------EIENRVKRAMNIVGLDYEDYKDKSP 142 (287)
T ss_pred ccccHHHHHHhHHHHCCCC----------HH------------------------HHHHHHHHHHHHcCCCchhhccCCc
Confidence 4579999998864322110 00 0112356788999997 5677777
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
.+ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.|+ ..++.++||+|+
T Consensus 143 ~~-----LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd-~~~~~~~~drv~ 216 (287)
T PRK13637 143 FE-----LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHS-MEDVAKLADRII 216 (287)
T ss_pred cc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHhCCEEE
Confidence 65 999999999999999999999999999999999999999999999977556777777665 457888999999
Q ss_pred EEcCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000615 416 LLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~---~F~~lG~~~p~ 444 (1389)
+|++|+++++|+++++.+ .+...|+.+|.
T Consensus 217 ~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 217 VMNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EEECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 999999999999998753 23344555444
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=329.49 Aligned_cols=196 Identities=26% Similarity=0.326 Sum_probs=166.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---h---hhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... . .+++.++|++|++.+++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~ 92 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER--PSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLM 92 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEcccCChhHHHHHHhheEEEecCccccc
Confidence 469999999999999999999999999999999999765 347999999986532 1 24567999999998889
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
.+|+.||+.+....+ ....++..+.++++++.+++.+..++. +..||||||||++||++|+.+|++|+||||
T Consensus 93 ~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP 164 (222)
T PRK10908 93 DRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNF-----PIQLSGGEQQRVGIARAVVNKPAVLLADEP 164 (222)
T ss_pred cccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999998865433 123334445678999999998776665 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
|+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.+|++++|.+ |+++
T Consensus 165 t~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~ 216 (222)
T PRK10908 165 TGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSD-GHLH 216 (222)
T ss_pred CCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEc
Confidence 9999999999999999999777899999999986 56677899999985 6654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=345.32 Aligned_cols=218 Identities=23% Similarity=0.350 Sum_probs=178.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 21 ~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~--p~~G~I~i~g~~~ 90 (320)
T PRK13631 21 ILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK--SKYGTIQVGDIYI 90 (320)
T ss_pred eEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCeEEECCEEc
Confidence 478999988764110 012359999999999999999999999999999999999765 3479999999764
Q ss_pred Ch-------------------hhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc
Q 000615 934 NQ-------------------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992 (1389)
Q Consensus 934 ~~-------------------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~ 992 (1389)
.. ..+++.+|||+|++ .+++ .||+||+.|..... ..+.++..+++.++++.++|.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~ 166 (320)
T PRK13631 91 GDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLD 166 (320)
T ss_pred ccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCC
Confidence 32 23567899999987 3554 59999998864321 223444456788999999996
Q ss_pred -ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHH
Q 000615 993 -SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 1071 (1389)
Q Consensus 993 -~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~ 1071 (1389)
+..+.. +..|||||||||+|||+|+.+|+||||||||+|||+.++..+++.|+++.++|+|||++||+++ ++.
T Consensus 167 ~~~~~~~-----~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~ 240 (320)
T PRK13631 167 DSYLERS-----PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVL 240 (320)
T ss_pred hhHhcCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHH
Confidence 455554 4579999999999999999999999999999999999999999999999877999999999976 467
Q ss_pred HhhCeEEEEecCcEEEEecCC
Q 000615 1072 EAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1072 ~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+.+|++++|.+ |++++.|+.
T Consensus 241 ~~adri~vl~~-G~i~~~g~~ 260 (320)
T PRK13631 241 EVADEVIVMDK-GKILKTGTP 260 (320)
T ss_pred HhCCEEEEEEC-CEEEEeCCH
Confidence 88999999985 899999985
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=333.40 Aligned_cols=205 Identities=28% Similarity=0.373 Sum_probs=173.9
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHHG 258 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~~ 258 (1389)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPT---SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS 95 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEccCcccCC
Confidence 6999999999999999999999999999999999999987 8999999998765321 357999999999999
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
.+||+||+.+.....+.. .. .....++..++.+||++..++.+.+
T Consensus 96 ~~t~~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~- 140 (233)
T cd03258 96 SRTVFENVALPLEIAGVP----------KA------------------------EIEERVLELLELVGLEDKADAYPAQ- 140 (233)
T ss_pred CCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhhhhcChhh-
Confidence 999999998754322110 00 0011346678899999888887765
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~ 215 (233)
T cd03258 141 ----LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAVME 215 (233)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998765567877777665 47788999999999
Q ss_pred CCeEEEecChhHHH
Q 000615 419 EGQIVYQGPRDNVL 432 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1389)
+|++++.|+.+++.
T Consensus 216 ~G~i~~~~~~~~~~ 229 (233)
T cd03258 216 KGEVVEEGTVEEVF 229 (233)
T ss_pred CCEEEEecCHHHHh
Confidence 99999999987763
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-36 Score=332.09 Aligned_cols=199 Identities=31% Similarity=0.452 Sum_probs=167.4
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hh-hhheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+... .. .++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP--PRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL 90 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC
Confidence 469999999999999999999999999999999999765 347999999987532 11 245699999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
|++||+.+...... ..+..+.+.++++.+ ++.+..+.. +..||||||||++|||+|+.+|++|+|||||
T Consensus 91 t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt 160 (222)
T cd03224 91 TVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQL-----AGTLSGGEQQMLAIARALMSRPKLLLLDEPS 160 (222)
T ss_pred cHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEECCCc
Confidence 99999988654321 122334567788887 466655554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||+.++..+++.|++++++|+|||+++|+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 161 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 216 (222)
T cd03224 161 EGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER-GRVVLEGTA 216 (222)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC-CeEEEeCCH
Confidence 999999999999999999877899999999976 57788999999974 899888864
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=331.12 Aligned_cols=200 Identities=31% Similarity=0.443 Sum_probs=168.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~ 91 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV--AQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSV 91 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCcH
Confidence 469999999999999999999999999999999999765 347999999986532 1233579999999988899999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
+||+.+....+ ....++..+.++++++.++|.+..++.+ ..||||||||++||++|+.+|++|+|||||+||
T Consensus 92 ~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEP~~~L 163 (236)
T TIGR03864 92 RQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKV-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGL 163 (236)
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCC
Confidence 99998765432 1223334456889999999987776654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1038 DARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+.++..+.+.|+++++ +|+|||+++|+++ ++ ..+|++++|.+ |++++.|+.
T Consensus 164 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~i~~l~~-G~i~~~~~~ 216 (236)
T TIGR03864 164 DPASRAAIVAHVRALCRDQGLSVLWATHLVD-EI-EADDRLVVLHR-GRVLADGAA 216 (236)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hH-hhCCEEEEEeC-CeEEEeCCH
Confidence 99999999999999975 5899999999976 34 45999999985 889888864
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=329.20 Aligned_cols=201 Identities=27% Similarity=0.356 Sum_probs=170.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++||+|++.+++.+||+
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~tv~ 91 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPT---SGEVLVDGEPVTG--PGPDRGYVFQQDALLPWLTVL 91 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcc--ccCcEEEEecccccccCCCHH
Confidence 46999999999999999999999999999999999999886 9999999998764 346799999999989889999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
||+.++....+.. .. .....++.+++.+||++..++.+++ |
T Consensus 92 e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----L 132 (220)
T cd03293 92 DNVALGLELQGVP----------KA------------------------EARERAEELLELVGLSGFENAYPHQ-----L 132 (220)
T ss_pred HHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCCccc-----C
Confidence 9998864322110 00 0011356688899998888888766 9
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc--CCe
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~--~G~ 421 (1389)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|+ +|+
T Consensus 133 SgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~ 211 (220)
T cd03293 133 SGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGR 211 (220)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCE
Confidence 999999999999999999999999999999999999999999998665567877777665 47788999999999 799
Q ss_pred EEEecChh
Q 000615 422 IVYQGPRD 429 (1389)
Q Consensus 422 iv~~G~~~ 429 (1389)
++..++.+
T Consensus 212 i~~~~~~~ 219 (220)
T cd03293 212 IVAEVEVD 219 (220)
T ss_pred EEEEEEec
Confidence 99988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=334.95 Aligned_cols=215 Identities=21% Similarity=0.283 Sum_probs=178.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ .+.+|+|||++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~ 69 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGSIVVNGQTI 69 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEc
Confidence 367788876542 24699999999999999999999999999999999997653 479999999765
Q ss_pred Ch----------------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc-c
Q 000615 934 NQ----------------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-D 996 (1389)
Q Consensus 934 ~~----------------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-~ 996 (1389)
.. ..+++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+++.+.. +
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~ 147 (257)
T PRK10619 70 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQG 147 (257)
T ss_pred ccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 31 2345679999999999999999999987542111 122344456788999999997653 4
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCe
Q 000615 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076 (1389)
Q Consensus 997 ~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1076 (1389)
.. +..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||+
T Consensus 148 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~ 221 (257)
T PRK10619 148 KY-----PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSH 221 (257)
T ss_pred CC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCE
Confidence 43 4579999999999999999999999999999999999999999999999877999999999986 56677999
Q ss_pred EEEEecCcEEEEecCC
Q 000615 1077 LLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1077 ~l~l~~gG~~~~~g~~ 1092 (1389)
+++|.+ |++++.|+.
T Consensus 222 i~~l~~-G~i~~~~~~ 236 (257)
T PRK10619 222 VIFLHQ-GKIEEEGAP 236 (257)
T ss_pred EEEEEC-CEEEEeCCH
Confidence 999985 899988874
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=337.61 Aligned_cols=216 Identities=23% Similarity=0.319 Sum_probs=177.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCC-CCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHD-LHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 259 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++ ..++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE---SGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVG 96 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHHhhceEEEcChHHhccc
Confidence 35999999999999999999999999999999999999987 9999999998865332 35799999997 36777
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.|+.+..+.. .. +....++.+++.+||++..+..+++
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13650 97 ATVEDDVAFGLENKGIP----------HE------------------------EMKERVNEALELVGMQDFKEREPAR-- 140 (279)
T ss_pred ccHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998864322110 00 0112356788999999888888876
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..+|+|++|++
T Consensus 141 ---LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~~ 215 (279)
T PRK13650 141 ---LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMKN 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755788888887754 55 58999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 000615 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (1389)
Q Consensus 420 G~iv~~G~~~~~~~---~F~~lG~~~p 443 (1389)
|+++..|+++++.. .++..|+.+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 216 GQVESTSTPRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred CEEEEECCHHHHHcChHHHHHcCCCCc
Confidence 99999999988753 2334454433
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=330.73 Aligned_cols=200 Identities=25% Similarity=0.300 Sum_probs=163.4
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCC--CCC
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQND--IHS 952 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~--~~~ 952 (1389)
.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++ .+.
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK--PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLN 96 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcC
Confidence 69999999999999999999999999999999999765 347999999987542 23456799999998 466
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
+.+||+||+.+....... ....+.....++++++.+++. +..+.. +..||||||||++|||+|+.+|++|+||
T Consensus 97 ~~~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~lllLD 170 (228)
T cd03257 97 PRMTIGEQIAEPLRIHGK-LSKKEARKEAVLLLLVGVGLPEEVLNRY-----PHELSGGQRQRVAIARALALNPKLLIAD 170 (228)
T ss_pred CcCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHHHHCCCChhHhhCC-----chhcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 789999999876543321 111111122235889999985 455554 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
|||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 171 EPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 228 (228)
T cd03257 171 EPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYA-GKIVEEG 228 (228)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeC-CEEEecC
Confidence 999999999999999999999865 899999999986 56668999999985 7887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=328.55 Aligned_cols=192 Identities=26% Similarity=0.374 Sum_probs=162.4
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---hhhhhheeeEeccCCC-CCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDI-HSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~-~~~~l 955 (1389)
+.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+.. ....++.++|++|++. .++.+
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 91 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG--PTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP 91 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCC
Confidence 569999999999999999999999999999999999765 34799999998653 2345677999999975 36678
Q ss_pred CHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCC
Q 000615 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1035 (1389)
|++||+.+....+ ........+.++++++.++|.+..++. +..||||||||++|||+|+.+|++|+|||||+
T Consensus 92 t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~p~llllDEPt~ 163 (211)
T cd03225 92 TVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRS-----PFTLSGGQKQRVAIAGVLAMDPDILLLDEPTA 163 (211)
T ss_pred cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999998764332 122233445688999999998776665 35799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
|||+.++..+.+.|++++++|+|||++||++. ++...||++++|.+
T Consensus 164 ~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~ 209 (211)
T cd03225 164 GLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLED 209 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence 99999999999999999877999999999976 56677999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-36 Score=307.43 Aligned_cols=217 Identities=28% Similarity=0.410 Sum_probs=182.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
|+.+|++|++. .+++|++||++++|||++||+|||||||||||++|+|...+ .+|++.+||.+.+
T Consensus 2 i~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p--~~G~v~~~g~~l~ 66 (259)
T COG4559 2 IRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP--DSGEVTLNGVPLN 66 (259)
T ss_pred eeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC--CCCeEeeCCcChh
Confidence 46678888753 46799999999999999999999999999999999997663 3799999999864
Q ss_pred h---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
. ..+.+..+.+||+..+....||+|-+.++..-... .-...+..+.++++|+..++.+++.+.. ..|||||
T Consensus 67 ~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~-g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGE 140 (259)
T COG4559 67 SWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRS-GREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGE 140 (259)
T ss_pred hCCHHHHHHHhhhcccCcccccceEHHHHHHhccccccc-CCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchH
Confidence 3 45667789999999988888999999987532211 1111233445789999999999887763 4799999
Q ss_pred HHHHHHHHHHhh------CCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1012 RKRLTIAVELVA------NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1012 rqRl~ia~aL~~------~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
||||.+||.|+. ++++||||||||.||...+..++++.|+++++|..|+++-||++. ....+|++++|. +|+
T Consensus 141 qQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~-~Gr 218 (259)
T COG4559 141 QQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLH-QGR 218 (259)
T ss_pred HHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeee-CCe
Confidence 999999999975 346899999999999999999999999999999999999999985 677899999997 589
Q ss_pred EEEecCCCc
Q 000615 1086 VIYAGPLGH 1094 (1389)
Q Consensus 1086 ~~~~g~~~~ 1094 (1389)
++..|++.+
T Consensus 219 v~a~g~p~~ 227 (259)
T COG4559 219 VIASGSPQD 227 (259)
T ss_pred EeecCCHHH
Confidence 999998754
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=344.33 Aligned_cols=206 Identities=30% Similarity=0.416 Sum_probs=174.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 17 ~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 93 (303)
T TIGR01288 17 KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFT 93 (303)
T ss_pred eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECcccHHHHhhcEEEEeccccCCcCCc
Confidence 46999999999999999999999999999999999999887 999999999875322 2467999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 94 v~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~ll~~~~l~~~~~~~~~~---- 135 (303)
T TIGR01288 94 VRENLLVFGRYFGMS----------TR----------E--------------IEAVIPSLLEFARLESKADVRVAL---- 135 (303)
T ss_pred HHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHCCChhHhcCchhh----
Confidence 999998643321110 00 0 011245678899999988998876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.++||+|++|++|+
T Consensus 136 -LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~ 212 (303)
T TIGR01288 136 -LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGR 212 (303)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999876 467777776655 58889999999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
+++.|+++++..
T Consensus 213 i~~~g~~~~~~~ 224 (303)
T TIGR01288 213 KIAEGRPHALID 224 (303)
T ss_pred EEEEcCHHHHHh
Confidence 999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=333.10 Aligned_cols=202 Identities=26% Similarity=0.345 Sum_probs=169.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcCccCCh-----hhhhheeeEeccCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 951 (1389)
..+|+|+|++|++||+++|+|+||||||||+++|+|...+. ..+|+|.++|.+... ...++.++|++|++.+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (247)
T TIGR00972 14 KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNP 93 (247)
T ss_pred eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCccc
Confidence 45999999999999999999999999999999999975421 127999999987542 2345679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc----ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 000615 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1389)
Q Consensus 952 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~i 1027 (1389)
++ .|++||+.+....+. ....++..+.++++++.++|. +..+.. +..||||||||++||++|+.+|++
T Consensus 94 ~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~l 165 (247)
T TIGR00972 94 FP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEV 165 (247)
T ss_pred CC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 88 999999988654331 122344456688999999997 444444 457999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1028 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 227 (247)
T TIGR00972 166 LLLDEPTSALDPIATGKIEELIQELKK-KYTIVIVTHNMQ-QAARISDRTAFFYD-GELVEYGPT 227 (247)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHh-cCeEEEEecCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999999876 589999999976 57788999999985 889988874
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=340.93 Aligned_cols=217 Identities=22% Similarity=0.343 Sum_probs=177.8
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++... ...+.+|+|||++|++||++||+|+||||||||+++|+|...+ ..|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p--~~G~i~~~g~~i~ 72 (286)
T PRK13646 3 IRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP--TTGTVTVDDITIT 72 (286)
T ss_pred EEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 57788877653110 0123599999999999999999999999999999999997653 4799999998753
Q ss_pred h-------hhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000615 935 Q-------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1389)
Q Consensus 935 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 1004 (1389)
. ..+++.+|||+|++ .+++ .||.||+.|..... ..+.++..+++.++++.+||. +..++. +
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~ 143 (286)
T PRK13646 73 HKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQS-----P 143 (286)
T ss_pred cccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 24567899999986 3444 59999998865322 233445556789999999996 566654 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+
T Consensus 144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~- 221 (286)
T PRK13646 144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKE- 221 (286)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-
Confidence 57999999999999999999999999999999999999999999999975 4899999999976 56788999999985
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 222 G~i~~~g~~ 230 (286)
T PRK13646 222 GSIVSQTSP 230 (286)
T ss_pred CEEEEECCH
Confidence 899999875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-36 Score=329.71 Aligned_cols=199 Identities=30% Similarity=0.451 Sum_probs=163.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCC--CCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHS--PYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~--~~lTv 957 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.. ..++.++|++|++.+. +.+||
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~--~~~~~i~~v~q~~~~~~~~~~tv 87 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP--TSGSIRVFGKPLE--KERKRIGYVPQRRSIDRDFPISV 87 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCCEEEECCccHH--HHHhheEEeccccccccCCCCcH
Confidence 4699999999999999999999999999999999997653 4799999998653 3456799999998764 34899
Q ss_pred HHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCC
Q 000615 958 YESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1389)
Q Consensus 958 ~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1036 (1389)
+||+.+....+.. .....+...+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 162 (213)
T cd03235 88 RDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAG 162 (213)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999875432110 00111233456889999999987766653 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ | +++.|
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-~-~~~~g 213 (213)
T cd03235 163 VDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNR-T-VVASG 213 (213)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcC-c-EeecC
Confidence 9999999999999999877999999999976 56778999999974 5 55543
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=340.13 Aligned_cols=216 Identities=24% Similarity=0.320 Sum_probs=180.2
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++.. ..+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 71 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA--ESGQIIIDGDLL 71 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEC
Confidence 36788888765310 123599999999999999999999999999999999997653 479999999876
Q ss_pred Ch---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.. ...++.+||++|++. .++..||+||+.|..... ..+.++..+.++++++.++|.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (279)
T PRK13650 72 TEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSG 143 (279)
T ss_pred CcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 42 345677999999974 667789999998865332 2334455567899999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||++||++|+.+|+||+|||||+|||+.++..+++.|++++++ |+|||++||+++ ++ ..+|++++|. +|+++.
T Consensus 144 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~-~G~i~~ 220 (279)
T PRK13650 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK-NGQVES 220 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999976 34 6799999997 489998
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 221 ~g~~ 224 (279)
T PRK13650 221 TSTP 224 (279)
T ss_pred ECCH
Confidence 8875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.53 Aligned_cols=215 Identities=25% Similarity=0.382 Sum_probs=174.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 13 LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT---SGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 46999999999999999999999999999999999999887 8999999998765432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++....+... ..+. .. .... ......++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~~-------~~~~---~~-~~~~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 90 LTVLENVMVAAQARTGSG-------LLLA---RA-RREE-------------REARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCHHHHHHHHHhhccccc-------cccc---cc-cccH-------------HHHHHHHHHHHHHcCccchhhCChhh--
Confidence 999999988643221000 0000 00 0000 00112356788899998888888766
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++
T Consensus 144 ---LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~ 218 (236)
T cd03219 144 ---LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTVLDQ 218 (236)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEeC
Confidence 999999999999999999999999999999999999999999999876 467877776665 478889999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|++++.|+++++.
T Consensus 219 G~i~~~~~~~~~~ 231 (236)
T cd03219 219 GRVIAEGTPDEVR 231 (236)
T ss_pred CEEEeecCHHHhc
Confidence 9999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=339.29 Aligned_cols=216 Identities=26% Similarity=0.384 Sum_probs=180.2
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ +++.+|+|||++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~------------~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~--p~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS------------DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK--PSSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCccEEEECCEEC
Confidence 478888887652 12469999999999999999999999999999999999765 3479999999875
Q ss_pred C-----hhhhhheeeEeccCCCC-CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCC
Q 000615 934 N-----QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1389)
Q Consensus 934 ~-----~~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~L 1007 (1389)
. ...+++.+||++|++.. ....||+||+.+..... ..+.++..+.++++++.++|.+..++. ++.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~-----~~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKP-----THCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCC-----cccC
Confidence 3 12356779999999742 34679999998864322 223444456789999999998877776 4579
Q ss_pred CHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1008 SgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
|||||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||++++|.+ |++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~-G~i 220 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKE-GRV 220 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 899999999976 46678999999985 899
Q ss_pred EEecCCC
Q 000615 1087 IYAGPLG 1093 (1389)
Q Consensus 1087 ~~~g~~~ 1093 (1389)
++.|+..
T Consensus 221 ~~~g~~~ 227 (283)
T PRK13636 221 ILQGNPK 227 (283)
T ss_pred EEeCCHH
Confidence 9999853
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=338.08 Aligned_cols=223 Identities=25% Similarity=0.374 Sum_probs=179.9
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-------CcCceEEEecCCC--C
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHD--L 255 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d--~ 255 (1389)
.+|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.++||+|++ .
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~ 96 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPT---EGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQ 96 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEECccccccccHHHHHhhEEEEecCcchh
Confidence 5999999999999999999999999999999999999987 99999999987531 1245799999986 4
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 334 (1389)
++ ..||.||+.|+....+.. +. + ....+..+++.+||. +..++.
T Consensus 97 l~-~~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~L~~~~~~~~ 141 (288)
T PRK13643 97 LF-EETVLKDVAFGPQNFGIP----------KE----------K--------------AEKIAAEKLEMVGLADEFWEKS 141 (288)
T ss_pred cc-cchHHHHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhccCC
Confidence 44 469999999875432211 00 0 112356678889996 456776
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.++||+|
T Consensus 142 ~~~-----LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dri 214 (288)
T PRK13643 142 PFE-----LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADYV 214 (288)
T ss_pred ccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEE
Confidence 655 999999999999999999999999999999999999999999999875 367777776654 5788999999
Q ss_pred EEEcCCeEEEecChhHHHH---HHHhcCCCCCCCCChHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLE---FFEHMGFKCPERKGVADFL 452 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~---~F~~lG~~~p~~~~~adfl 452 (1389)
++|++|+++++|+++++.+ +++..|+.+|.....++.+
T Consensus 215 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 215 YLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999998743 4556677776654444433
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=333.39 Aligned_cols=214 Identities=29% Similarity=0.389 Sum_probs=173.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (241)
T cd03256 14 KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT---SGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLI 90 (241)
T ss_pred cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEeccccCHhHHHHHHhccEEEcccCccc
Confidence 46999999999999999999999999999999999999886 899999999876543 135799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.++..... . .. ..+ .+... . .....++.+++.+||++..++.+++
T Consensus 91 ~~~tv~~~l~~~~~~~~-~-~~---~~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 144 (241)
T cd03256 91 ERLSVLENVLSGRLGRR-S-TW---RSL------FGLFP-K--------------EEKQRALAALERVGLLDKAYQRADQ 144 (241)
T ss_pred ccCcHHHHHHhhhcccc-h-hh---hhh------cccCc-H--------------HHHHHHHHHHHHcCChhhhCCCccc
Confidence 99999999987532110 0 00 000 00000 0 0112345678899998877777765
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|
T Consensus 145 -----LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~~l 218 (241)
T cd03256 145 -----LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIVGL 218 (241)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765567777776655 4788899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+++++.
T Consensus 219 ~~G~i~~~~~~~~~~ 233 (241)
T cd03256 219 KDGRIVFDGPPAELT 233 (241)
T ss_pred ECCEEEeecCHHHhh
Confidence 999999999988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=333.94 Aligned_cols=214 Identities=28% Similarity=0.394 Sum_probs=178.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+ +++.+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~-------------~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 68 (241)
T PRK10895 4 LTAKNLAKAY-------------KGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP--RDAGNIIIDDEDIS 68 (241)
T ss_pred EEEeCcEEEe-------------CCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECC
Confidence 5667776543 23469999999999999999999999999999999999765 34799999998753
Q ss_pred h----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
. ...++.++|++|++.+++.+||.||+.+...++. ....++.+..++++++.+++.+..+.. ++.||||
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 141 (241)
T PRK10895 69 LLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSM-----GQSLSGG 141 (241)
T ss_pred CCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcc-----hhhCCHH
Confidence 2 2235679999999999999999999987643321 122334456688999999998766655 4579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
|||||+||++|+.+|++|+|||||+|||+.++..+.+.+++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~-G~i~~~~ 219 (241)
T PRK10895 142 ERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ-GHLIAHG 219 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC-CeEEeeC
Confidence 999999999999999999999999999999999999999998877999999999975 67788999999974 8899888
Q ss_pred CC
Q 000615 1091 PL 1092 (1389)
Q Consensus 1091 ~~ 1092 (1389)
+.
T Consensus 220 ~~ 221 (241)
T PRK10895 220 TP 221 (241)
T ss_pred CH
Confidence 75
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-35 Score=326.48 Aligned_cols=200 Identities=29% Similarity=0.398 Sum_probs=169.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||
T Consensus 13 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 13 VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPT---SGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 36999999999999999999999999999999999999887 9999999998764332 3579999999998989999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+..+..+.. .. +....++.+++.+||++..++.+++
T Consensus 90 ~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (213)
T cd03301 90 YDNIAFGLKLRKVP----------KD------------------------EIDERVREVAELLQIEHLLDRKPKQ----- 130 (213)
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhCChhh-----
Confidence 99998764322110 00 0012356678899999888888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|++
T Consensus 131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~ 209 (213)
T cd03301 131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQI 209 (213)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999865577888877665 478889999999999999
Q ss_pred EEec
Q 000615 423 VYQG 426 (1389)
Q Consensus 423 v~~G 426 (1389)
++.|
T Consensus 210 ~~~g 213 (213)
T cd03301 210 QQIG 213 (213)
T ss_pred EecC
Confidence 9876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=343.00 Aligned_cols=229 Identities=20% Similarity=0.223 Sum_probs=182.5
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..++............+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p--~~G~I~~~G~~i 85 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA--TDGEVAWLGKDL 85 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCcEEEECCEEC
Confidence 478888876654211000000011235699999999999999999999999999999999997653 479999999876
Q ss_pred Ch------hhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000615 934 NQ------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1389)
Q Consensus 934 ~~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 1004 (1389)
.. ..+++.++||+|++ .++|.+||.|++.+......+ ..+.++.++.+.++++.++|. +..+.. +
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p 159 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----P 159 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----c
Confidence 42 12456799999998 578899999999886543211 234455667788999999994 345554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
..|||||||||+||+||+.+|++|++||||+|||+.++..+++.|+++.++ |.|||++||+++ .+.+.+|++++|. +
T Consensus 160 ~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~-~ 237 (331)
T PRK15079 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMY-L 237 (331)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 579999999999999999999999999999999999999999999999764 899999999976 4667899999998 4
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 238 G~ive~g~~ 246 (331)
T PRK15079 238 GHAVELGTY 246 (331)
T ss_pred CEEEEEcCH
Confidence 899999985
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=377.61 Aligned_cols=135 Identities=22% Similarity=0.263 Sum_probs=108.7
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHh---hCCC
Q 000615 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELV---ANPS 1026 (1389)
Q Consensus 951 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqRl~ia~aL~---~~p~ 1026 (1389)
.+...||.|+|.++..-..+.....++..+.+ ++++.++|.+. .+.. +..||||||||+.||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~-----~~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRP-----LSSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45568999999887652222112223344455 58899999876 5655 3579999999999999998 5999
Q ss_pred CceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEecCCC
Q 000615 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1389)
Q Consensus 1027 illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~~~~~g~~~ 1093 (1389)
+|+|||||+|||+.+...+++.|++++++|.|||+++|+++ .+ +.+|+++.|. .+|+++..|++.
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpe 902 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPE 902 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHH
Confidence 99999999999999999999999999888999999999976 34 8999999995 368999999864
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=334.24 Aligned_cols=206 Identities=22% Similarity=0.301 Sum_probs=174.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~~g~~~ 76 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP--SAGELLAGTAPL 76 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCeEEEECCEEH
Confidence 478888876542 24699999999999999999999999999999999997653 479999998764
Q ss_pred ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000615 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 1013 (1389)
. ..++.++|++|++.+++.+||+||+.+... . ..++.+.++++.++|.+..+.. +..|||||||
T Consensus 77 ~--~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~-----~~~LSgGqkq 140 (257)
T PRK11247 77 A--EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEW-----PAALSGGQKQ 140 (257)
T ss_pred H--HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCC-----hhhCCHHHHH
Confidence 3 345679999999999998999999987421 0 1234578899999998776665 3579999999
Q ss_pred HHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1014 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|++||++|+.+|++|||||||+|||+.++..+.+.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 141 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~-G~i~~~~~~ 218 (257)
T PRK11247 141 RVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEE-GKIGLDLTV 218 (257)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEeeccc
Confidence 99999999999999999999999999999999999999865 4899999999976 56778999999985 889888764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=342.39 Aligned_cols=205 Identities=29% Similarity=0.446 Sum_probs=176.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~---~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~t 91 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD---SGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMY 91 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccChHHHHhceEEecCCCCCCCCCc
Confidence 46999999999999999999999999999999999999987 999999999876432 2457999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|.||+.|.++..+... . +....++.+++.+||++..|+.+++
T Consensus 92 v~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~---- 133 (301)
T TIGR03522 92 VREYLQFIAGIYGMKG----------Q------------------------LLKQRVEEMIELVGLRPEQHKKIGQ---- 133 (301)
T ss_pred HHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHCCCchHhcCchhh----
Confidence 9999988654432110 0 0011356788999999989888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+++|++|+|||||+|||+.++.++.+.|+++++ +.|++++.|+ ..++.++||+|++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~-l~~~~~~~d~i~~l~~G~ 209 (301)
T TIGR03522 134 -LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHI-MQEVEAICDRVIIINKGK 209 (301)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999853 5677666655 458999999999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
+++.|+.+++..
T Consensus 210 i~~~g~~~~~~~ 221 (301)
T TIGR03522 210 IVADKKLDELSA 221 (301)
T ss_pred EEEeCCHHHHHH
Confidence 999999998865
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=327.32 Aligned_cols=195 Identities=26% Similarity=0.378 Sum_probs=163.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hh---hh-heeeEeccCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET---FA-RVSGYCEQNDIHS 952 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~---~~-~~~gyv~Q~~~~~ 952 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... .. ++ +.++|++|++.++
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 95 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP--TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL 95 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccC
Confidence 4699999999999999999999999999999999997653 47999999987532 11 22 5699999999888
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeC
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1032 (1389)
+.+||+||+.+....+. ....+..+.+.++++.+++.+..+..+ ..||||||||++||++|+.+|+||+|||
T Consensus 96 ~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~illlDE 167 (221)
T TIGR02211 96 PDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRP-----SELSGGERQRVAIARALVNQPSLVLADE 167 (221)
T ss_pred CCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 99999999988654331 122333456789999999987776653 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1033 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
||+|||+.++..+.+.|++++++ |+|||++||+++ .+ +.+|++++|.+ |+++
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~l~~-G~i~ 220 (221)
T TIGR02211 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLEMKD-GQLF 220 (221)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEEEeC-CEec
Confidence 99999999999999999999764 899999999976 34 56899999985 6654
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=365.23 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhhCC---CCce
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVANP---SIIF 1029 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p---~ill 1029 (1389)
.+||.|++.|...+. . .....+.++.++|... .+.. +..||||||||+.||++|+.+| ++++
T Consensus 791 ~ltv~E~l~~f~~~~---~------i~~~l~~L~~vgL~~l~l~~~-----~~tLSgGEkQRl~LAraL~~~p~~~~llI 856 (943)
T PRK00349 791 DMTVEEALEFFEAIP---K------IARKLQTLVDVGLGYIKLGQP-----ATTLSGGEAQRVKLAKELSKRSTGKTLYI 856 (943)
T ss_pred cCcHHHHHHHHHhch---h------hhHHHHHHHHCCCCcccccCC-----cccCCHHHHHHHHHHHHHhcCCCCCeEEE
Confidence 378999988865432 1 1124678999999763 4544 3579999999999999999999 9999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEecCC
Q 000615 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1389)
Q Consensus 1030 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~~~~~g~~ 1092 (1389)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. ++|++++.|+.
T Consensus 857 LDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~--~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~ 922 (943)
T PRK00349 857 LDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVATGTP 922 (943)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH--HHHhCCEEEEecCCcCCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 456899999994 57999999975
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-35 Score=349.52 Aligned_cols=207 Identities=22% Similarity=0.301 Sum_probs=177.1
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1389)
...+|+|+|++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~---sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~ 116 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPT---RGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA 116 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc
Confidence 346899999999999999999999999999999999999987 9999999999865432 247999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
+++.+||+||+.|+....+... .+ ....++.+++.+||++..++.+
T Consensus 117 l~~~~Tv~enl~~~~~~~~~~~----------~~------------------------~~~~~~e~L~~~gL~~~~~~~~ 162 (400)
T PRK10070 117 LMPHMTVLDNTAFGMELAGINA----------EE------------------------RREKALDALRQVGLENYAHSYP 162 (400)
T ss_pred CCCCCCHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCChhhhcCc
Confidence 9999999999998754322110 00 0113566889999998888888
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
.+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.+..++|+|++.|++ .++.+++|+|+
T Consensus 163 ~~-----LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~ 236 (400)
T PRK10070 163 DE-----LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIA 236 (400)
T ss_pred cc-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999998765577877776654 58889999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000615 416 LLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++++.|+++++.
T Consensus 237 vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 237 IMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEECCEEEecCCHHHHH
Confidence 99999999999998874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-35 Score=378.52 Aligned_cols=205 Identities=28% Similarity=0.400 Sum_probs=171.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++|+|||.++|+||||||||||+|+|+|.++|+ +|+|.+||+++++..+ ++.++||+|++.+|+ .
T Consensus 466 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 541 (686)
T TIGR03797 466 PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE---SGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-G 541 (686)
T ss_pred ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcCcCCHHHHHhccEEEccCCccCc-c
Confidence 46999999999999999999999999999999999999997 9999999999987754 578999999999986 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++.. . +.++..+++...+. +.. .-.|++..||.+|+ .+
T Consensus 542 TI~eNi~~~~~-~-------------------------~~e~i~~al~~a~l------~~~--i~~lp~G~dt~ige-~G 586 (686)
T TIGR03797 542 SIFENIAGGAP-L-------------------------TLDEAWEAARMAGL------AED--IRAMPMGMHTVISE-GG 586 (686)
T ss_pred cHHHHHhcCCC-C-------------------------CHHHHHHHHHHcCc------HHH--HHhccccccccccC-CC
Confidence 99999988532 0 11112222222211 111 12467889999996 46
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
..||||||||++||||++++|++|+||||||+||+.++.++.+.|+++ ++|+|+..|++ ++.+.+|+|++|++|
T Consensus 587 ~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~Iivl~~G 660 (686)
T TIGR03797 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADRIYVLDAG 660 (686)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCEEEEEECC
Confidence 779999999999999999999999999999999999999999999875 46888887766 677889999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++++++
T Consensus 661 ~iv~~G~~~~Ll~ 673 (686)
T TIGR03797 661 RVVQQGTYDELMA 673 (686)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=340.46 Aligned_cols=218 Identities=22% Similarity=0.338 Sum_probs=176.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-------CcCceEEEecCCCC-
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDL- 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~- 255 (1389)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++||+|++.
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT---SGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEH 96 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhhEEEEeeCchh
Confidence 45999999999999999999999999999999999999987 89999999987531 12357999999862
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 334 (1389)
.+...||+||+.|+.+..+.. .. +....++.+++.+||+ +..++.
T Consensus 97 ~l~~~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (290)
T PRK13634 97 QLFEETVEKDICFGPMNFGVS----------EE------------------------DAKQKAREMIELVGLPEELLARS 142 (290)
T ss_pred hhhhhhHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCChhhhhCC
Confidence 333579999999864322110 00 0112356788999997 567877
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+.+ |||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++..+.|+|++.|+. .++.+++|+|
T Consensus 143 ~~~-----LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 143 PFE-----LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 766 9999999999999999999999999999999999999999999999775577877776654 5888999999
Q ss_pred EEEcCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000615 415 ILLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~---~F~~lG~~~p~ 444 (1389)
++|++|+++++|+++++.+ .+...|..+|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 9999999999999988742 23344544443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=332.95 Aligned_cols=202 Identities=25% Similarity=0.332 Sum_probs=171.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----------------hhhhheee
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----------------ETFARVSG 943 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----------------~~~~~~~g 943 (1389)
+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 90 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI--DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIG 90 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccccccchhHHHHHhhCeE
Confidence 4699999999999999999999999999999999997653 47999999986531 13456799
Q ss_pred EeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh
Q 000615 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA 1023 (1389)
Q Consensus 944 yv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~ 1023 (1389)
|++|++.+++..|+.||+.+...... .......++.++++++.+++.+..+.. +..||||||||++||++|+.
T Consensus 91 ~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrv~laral~~ 163 (252)
T TIGR03005 91 MVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM-----PAQLSGGQQQRVAIARALAM 163 (252)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC-----hhhcCHHHHHHHHHHHHHHc
Confidence 99999999999999999987542211 123344456688999999998777665 45799999999999999999
Q ss_pred CCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1024 NPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1024 ~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||+++ ++...+|++++|.+ |++++.|+.
T Consensus 164 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 231 (252)
T TIGR03005 164 RPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCFFDK-GRIVEQGKP 231 (252)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEEeCCH
Confidence 99999999999999999999999999998765 899999999986 56678999999985 899988874
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=329.63 Aligned_cols=205 Identities=24% Similarity=0.374 Sum_probs=173.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+.+|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 13 RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD---SGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 46999999999999999999999999999999999999887 8999999998754332 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.+.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 133 (232)
T cd03218 90 LTVEENILAVLEIRGLS----------KK----------E--------------REEKLEELLEEFHITHLRKSKASS-- 133 (232)
T ss_pred CcHHHHHHHHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCChhh--
Confidence 99999998753221100 00 0 011346688899998888888766
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++
T Consensus 134 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~ 208 (232)
T cd03218 134 ---LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYE 208 (232)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999876 467777776655 488899999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|++++.|+.+++.
T Consensus 209 G~i~~~~~~~~~~ 221 (232)
T cd03218 209 GKVLAEGTPEEIA 221 (232)
T ss_pred CeEEEEeCHHHhh
Confidence 9999999988763
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=330.63 Aligned_cols=213 Identities=24% Similarity=0.355 Sum_probs=177.3
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM--PRSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEecc
Confidence 56777765442 2469999999999999999999999999999999999765 34799999998642
Q ss_pred ---------hhhhhheeeEeccCCCCCCCCCHHHHHHHHH-HhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCC
Q 000615 935 ---------QETFARVSGYCEQNDIHSPYVTVYESLLYSA-WLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGV 1004 (1389)
Q Consensus 935 ---------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~-~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~ 1004 (1389)
....++.++|++|++.+++.+||.||+.+.. ... .....+..+.+.++++.+|+.+..+..+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 139 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP----- 139 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----
Confidence 1234567999999999999999999997532 221 1223334456889999999987777653
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |
T Consensus 140 ~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~-g 217 (242)
T PRK11124 140 LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMEN-G 217 (242)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999986 56678999999985 8
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (242)
T PRK11124 218 HIVEQGDA 225 (242)
T ss_pred EEEEeCCH
Confidence 99988874
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=331.66 Aligned_cols=206 Identities=28% Similarity=0.407 Sum_probs=172.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
..+|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPT---SGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM 90 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCeEcCcCChHHhhcceEEEccCccccCCC
Confidence 46999999999999999999999999999999999999887 8999999998764332 35799999999999999
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc--cccccccCc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--CADTMVGDE 338 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~--~~dt~vg~~ 338 (1389)
||+||+.++.+..+.. .. + ....++.+++.+||++ ..++.+.+
T Consensus 91 tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~l~l~~~~~~~~~~~~- 135 (242)
T cd03295 91 TVEENIALVPKLLKWP----------KE----------K--------------IRERADELLALVGLDPAEFADRYPHE- 135 (242)
T ss_pred cHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCCcHHHHhcChhh-
Confidence 9999998754322110 00 0 0113456788999985 56666655
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|+
T Consensus 136 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~ 210 (242)
T cd03295 136 ----LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMK 210 (242)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999765467777777665 47789999999999
Q ss_pred CCeEEEecChhHHH
Q 000615 419 EGQIVYQGPRDNVL 432 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1389)
+|++++.|+.+++.
T Consensus 211 ~G~i~~~~~~~~~~ 224 (242)
T cd03295 211 NGEIVQVGTPDEIL 224 (242)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999988764
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=329.16 Aligned_cols=195 Identities=24% Similarity=0.348 Sum_probs=163.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 92 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPT---RGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLL 92 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEehhhcChhHHHHHHHhceEEecCcccc
Confidence 36999999999999999999999999999999999999887 899999999875432 235799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.++.+..+.. .. +....++.+++.+||++..++.+++
T Consensus 93 ~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 93 SDRTVYDNVAFPLRIIGVP----------PR------------------------DANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred ccccHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 9999999998864322110 00 0012356678899998888888766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|
T Consensus 139 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l 211 (216)
T TIGR00960 139 -----LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTL 211 (216)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999865 367777766654 5777899999999
Q ss_pred cCCeE
Q 000615 418 SEGQI 422 (1389)
Q Consensus 418 ~~G~i 422 (1389)
++|++
T Consensus 212 ~~G~i 216 (216)
T TIGR00960 212 SRGRL 216 (216)
T ss_pred eCCcC
Confidence 99975
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=336.73 Aligned_cols=200 Identities=23% Similarity=0.324 Sum_probs=170.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCCC-CCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDI-HSPY 954 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~-~~~~ 954 (1389)
+.+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.+||++|++. .+..
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR--PQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVG 92 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCEECCccccHHHHHhheEEEEEChhhhccc
Confidence 459999999999999999999999999999999999765 347999999987632 234567999999975 3567
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
.|+.||+.|..... ..+.++..+.++++++.++|.+..+..+ ..||||||||++||+||+.+|+||||||||
T Consensus 93 ~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt 164 (274)
T PRK13644 93 RTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP-----KTLSGGQGQCVALAGILTMEPECLIFDEVT 164 (274)
T ss_pred chHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 89999998765332 2234444566899999999988777663 579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+|||+.++..+++.|+++.++|+|||++||+++ ++ ..+|++++|.+ |++++.|+.
T Consensus 165 ~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~-G~i~~~g~~ 219 (274)
T PRK13644 165 SMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR-GKIVLEGEP 219 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999877999999999976 44 67999999985 899999885
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=338.05 Aligned_cols=218 Identities=24% Similarity=0.318 Sum_probs=177.3
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++.. ....+.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 i~~~~l~~~~~~~--------~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 72 (287)
T PRK13641 3 IKFENVDYIYSPG--------TPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP--SSGTITIAGYHIT 72 (287)
T ss_pred EEEEEEEEEcCCC--------CCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEECc
Confidence 5677777654210 00014599999999999999999999999999999999997653 4899999998753
Q ss_pred h-------hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000615 935 Q-------ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1389)
Q Consensus 935 ~-------~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 1005 (1389)
. ...++.+||++|++. .+..+||.||+.|..... ....++..++++++++.++|. +..+.. +.
T Consensus 73 ~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~ 144 (287)
T PRK13641 73 PETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKS-----PF 144 (287)
T ss_pred cccccchHHHHHhceEEEEeChhhhhccchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCC-----cc
Confidence 1 234567999999973 233589999998765332 223344556789999999996 566665 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++|.|||++||+++ ++.+.||++++|++ |+
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~-G~ 222 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEH-GK 222 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999877999999999976 57788999999985 89
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
+++.|+.
T Consensus 223 i~~~g~~ 229 (287)
T PRK13641 223 LIKHASP 229 (287)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=328.28 Aligned_cols=203 Identities=29% Similarity=0.410 Sum_probs=171.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~t 91 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPT---SGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELT 91 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEecccchHHHhhhEEEecCcCCccccCC
Confidence 46999999999999999999999999999999999999887 999999999875421 2356999999999998999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+..+..+... . + ....++.+++.+||++..++.+++
T Consensus 92 v~~~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 133 (220)
T cd03263 92 VREHLRFYARLKGLPK----------S----------E--------------IKEEVELLLRVLGLTDKANKRART---- 133 (220)
T ss_pred HHHHHHHHHHHcCCCH----------H----------H--------------HHHHHHHHHHHcCCHHHHhChhhh----
Confidence 9999987543322100 0 0 011346678899998888888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|++++|++|+
T Consensus 134 -LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~ 209 (220)
T cd03263 134 -LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGK 209 (220)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999865 46777776665 47778999999999999
Q ss_pred EEEecChhHH
Q 000615 422 IVYQGPRDNV 431 (1389)
Q Consensus 422 iv~~G~~~~~ 431 (1389)
+++.|+++++
T Consensus 210 i~~~~~~~~~ 219 (220)
T cd03263 210 LRCIGSPQEL 219 (220)
T ss_pred EEecCCHHHc
Confidence 9999998764
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=333.17 Aligned_cols=213 Identities=26% Similarity=0.350 Sum_probs=172.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 15 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 91 (243)
T TIGR02315 15 KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPS---SGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLI 91 (243)
T ss_pred cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccc
Confidence 46999999999999999999999999999999999999887 899999999876432 245799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.++...... ... .+ .+..+ . .....++.+++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~--~~~---~~------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~ 145 (243)
T TIGR02315 92 ERLTVLENVLHGRLGYKP--TWR---SL------LGRFS-E--------------EDKERALSALERVGLADKAYQRADQ 145 (243)
T ss_pred ccccHHHHHhhccccccc--chh---hh------hcccc-H--------------HHHHHHHHHHHHcCcHhhhcCCccc
Confidence 999999999875321100 000 00 00000 0 0112356678899998877777765
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|
T Consensus 146 -----LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~~l 219 (243)
T TIGR02315 146 -----LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIVGL 219 (243)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEE
Confidence 9999999999999999999999999999999999999999999998765567777776655 4778899999999
Q ss_pred cCCeEEEecChhHH
Q 000615 418 SEGQIVYQGPRDNV 431 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~ 431 (1389)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 220 KAGEIVFDGAPSEL 233 (243)
T ss_pred ECCEEEecCCHHHh
Confidence 99999999998775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=338.89 Aligned_cols=237 Identities=25% Similarity=0.399 Sum_probs=199.2
Q ss_pred hhhcCCCCCccEEEEeeeEEEEEEecCCCcCCChhHHHHHHHHHHhhhccccCCCcccceEeeeeEEEEeCCeEEEEEcC
Q 000615 126 TDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGP 205 (1389)
Q Consensus 126 ~~~~~~~~p~i~v~~~~l~v~~~~~~~~~~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~~llGp 205 (1389)
.+++.++-|+-.+..|++++- +...++++|+|+||.+.+|+.++|+||
T Consensus 323 ~~~m~LP~P~g~L~Ve~l~~~--------------------------------PPg~~~pil~~isF~l~~G~~lgIIGP 370 (580)
T COG4618 323 AERMPLPAPQGALSVERLTAA--------------------------------PPGQKKPILKGISFALQAGEALGIIGP 370 (580)
T ss_pred cCCCCCCCCCceeeEeeeeec--------------------------------CCCCCCcceecceeEecCCceEEEECC
Confidence 345667777888888888872 112346799999999999999999999
Q ss_pred CCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC---ceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHH
Q 000615 206 PGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282 (1389)
Q Consensus 206 ~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~ 282 (1389)
||||||||.++|.|..+|. +|.|.+||-+++.+.+. +.+||.||+-.+|+ .||.|||. |+
T Consensus 371 SgSGKSTLaR~lvG~w~p~---~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~-GTIaeNIa---Rf---------- 433 (580)
T COG4618 371 SGSGKSTLARLLVGIWPPT---SGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD-GTIAENIA---RF---------- 433 (580)
T ss_pred CCccHHHHHHHHHcccccC---CCcEEecchhhhcCCHHHhccccCcCcccceecC-CcHHHHHH---hc----------
Confidence 9999999999999999986 99999999999887653 78999999988886 59999993 21
Q ss_pred HHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCc
Q 000615 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362 (1389)
Q Consensus 283 ~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~ 362 (1389)
.++.|.+...+|+..++. .|. ++.|++.+||.||+ .+.+||||||||+++||||+++|.
T Consensus 434 ------------~~~~d~~kIieAA~lAgv-----Hel---Il~lP~GYdT~iG~-~G~~LSgGQRQRIaLARAlYG~P~ 492 (580)
T COG4618 434 ------------GEEADPEKVIEAARLAGV-----HEL---ILRLPQGYDTRIGE-GGATLSGGQRQRIALARALYGDPF 492 (580)
T ss_pred ------------cccCCHHHHHHHHHHcCh-----HHH---HHhCcCCccCccCC-CCCCCCchHHHHHHHHHHHcCCCc
Confidence 123344556666666553 233 46699999999997 467799999999999999999999
Q ss_pred EeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHHHHH
Q 000615 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFF 435 (1389)
Q Consensus 363 illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~~F 435 (1389)
+++||||-|+||+.....+.+.+.+... .|+|+|+..|.| .+...+|+|++|++|++-.+|+++|++...
T Consensus 493 lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~~~FG~r~eVLa~~ 562 (580)
T COG4618 493 LVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRIAAFGPREEVLAKV 562 (580)
T ss_pred EEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChHHhcCCHHHHHHHh
Confidence 9999999999999999999999999865 577888877765 688999999999999999999999998754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=330.70 Aligned_cols=212 Identities=23% Similarity=0.339 Sum_probs=175.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ .+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR--ATSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCceEEECCEec
Confidence 367788876542 2469999999999999999999999999999999999765 3479999999875
Q ss_pred Chh----hhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHc-CCcccccccccCCCCCCCC
Q 000615 934 NQE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 934 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l-~L~~~~~~~~g~~~~~~LS 1008 (1389)
... ..++.++|++|++.+++.+||.||+.+..... ..++..+.++++++.+ ++.+..+.. +..||
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~-----~~~LS 139 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQR-----AGTMS 139 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCc-----hhhCC
Confidence 431 24567999999999999999999998754221 1122334567778877 466555544 45799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 140 ~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (237)
T PRK11614 140 GGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLEN-GHVVL 217 (237)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeC-CEEEe
Confidence 99999999999999999999999999999999999999999999877999999999976 67889999999985 89999
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 218 ~~~~ 221 (237)
T PRK11614 218 EDTG 221 (237)
T ss_pred eCCH
Confidence 9875
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-35 Score=333.21 Aligned_cols=218 Identities=22% Similarity=0.239 Sum_probs=177.8
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK--PTGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC--CCcceEEECCEEC
Confidence 367778776442 3469999999999999999999999999999999999755 3479999999875
Q ss_pred Ch---hh-hhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-------C-----CCcHHHHHHHHHHHHHHcCCcccccc
Q 000615 934 NQ---ET-FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-------S-----DVDTKKRKMFVDEVMELVELKSLNDS 997 (1389)
Q Consensus 934 ~~---~~-~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-------~-----~~~~~~~~~~v~~~l~~l~L~~~~~~ 997 (1389)
.. .. .+..++|++|++.+++.+||+||+.+....... . .....+..+.++++++.+++.+..+.
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 42 12 233589999999999999999999886431100 0 00112233567889999999877776
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCe
Q 000615 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1076 (1389)
Q Consensus 998 ~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 1076 (1389)
.+ ..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.||+
T Consensus 150 ~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~ 223 (255)
T PRK11300 150 QA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDR 223 (255)
T ss_pred Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCE
Confidence 53 579999999999999999999999999999999999999999999999775 899999999976 57788999
Q ss_pred EEEEecCcEEEEecCCC
Q 000615 1077 LLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1077 ~l~l~~gG~~~~~g~~~ 1093 (1389)
+++|++ |++++.|+..
T Consensus 224 i~~l~~-g~i~~~~~~~ 239 (255)
T PRK11300 224 IYVVNQ-GTPLANGTPE 239 (255)
T ss_pred EEEEEC-CeEEecCCHH
Confidence 999984 8999988753
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=336.09 Aligned_cols=204 Identities=26% Similarity=0.329 Sum_probs=170.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .++.
T Consensus 18 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 94 (274)
T PRK13647 18 TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQ---RGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFS 94 (274)
T ss_pred CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHhhEEEEecChhhhhcc
Confidence 35999999999999999999999999999999999999887 9999999998865432 357999999963 4556
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
.||+||+.|+....+.. +. .....++.+++.+||++..++.+.+
T Consensus 95 ~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-- 138 (274)
T PRK13647 95 STVWDDVAFGPVNMGLD----------KD------------------------EVERRVEEALKAVRMWDFRDKPPYH-- 138 (274)
T ss_pred CcHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCChhh--
Confidence 89999998864321110 00 0012356788999999888888876
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++.++.+.|+++++. +.|++++.|+ ..++.+++|+|++|++
T Consensus 139 ---LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-g~tili~tH~-~~~~~~~~d~i~~l~~ 213 (274)
T PRK13647 139 ---LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQ-GKTVIVATHD-VDLAAEWADQVIVLKE 213 (274)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCC-HHHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998764 6777777665 4577789999999999
Q ss_pred CeEEEecChhHH
Q 000615 420 GQIVYQGPRDNV 431 (1389)
Q Consensus 420 G~iv~~G~~~~~ 431 (1389)
|++++.|+++++
T Consensus 214 G~i~~~g~~~~~ 225 (274)
T PRK13647 214 GRVLAEGDKSLL 225 (274)
T ss_pred CEEEEECCHHHh
Confidence 999999998754
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-35 Score=330.85 Aligned_cols=216 Identities=24% Similarity=0.292 Sum_probs=176.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcCc
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISGY 931 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g~ 931 (1389)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+ .+.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 4 IEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred EEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 56777765442 24699999999999999999999999999999999997542 135899999998
Q ss_pred cCCh---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc----ccccccCCCC
Q 000615 932 PKNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGLPGV 1004 (1389)
Q Consensus 932 ~~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~g~~~~ 1004 (1389)
++.. ...++.+||++|++.+++.+||.||+.+....+.. ....++..+.++++++.++|.+. .+.. +
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~ 144 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP-----A 144 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----c
Confidence 7532 34566799999999888999999999886543211 11223445568899999998542 3333 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
..||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|.+ |
T Consensus 145 ~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~-G 221 (250)
T PRK14247 145 GKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYK-G 221 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999864 899999999976 56778999999974 8
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (250)
T PRK14247 222 QIVEWGPT 229 (250)
T ss_pred eEEEECCH
Confidence 99988874
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=326.97 Aligned_cols=197 Identities=24% Similarity=0.369 Sum_probs=170.1
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
+.+|+|+|+++++||++||+||||||||||+++|+|... +.+|+|.++|.+..... .+.++|++|++.+++.+|++|
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR--PTSGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEeccccc-cccEEEEcCCCCccccCCHHH
Confidence 469999999999999999999999999999999999765 34799999998754322 256999999999899999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
|+.+....+. .. ...+.++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 90 ~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 90 NLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKA-----KQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred HHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhH-----hhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 9987654331 11 234788999999988777653 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
.++..+++.|++++++|+|||++||+++ ++.+.+|++++|.+ |++++.|++.
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~~~~~ 209 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISE-GVLGYQGKIN 209 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeC-CEEEEecChh
Confidence 9999999999999877999999999986 57788999999975 8999998864
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=326.49 Aligned_cols=203 Identities=25% Similarity=0.392 Sum_probs=169.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR---SGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 46999999999999999999999999999999999999887 8999999998765432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHh-CCcccccccccCc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~~~dt~vg~~ 338 (1389)
+||+||+.+.....+ . .+ ....++.+++.+ +|++..++.+++
T Consensus 90 ~t~~~~l~~~~~~~~-~---------------------~~--------------~~~~~~~~l~~~~~l~~~~~~~~~~- 132 (222)
T cd03224 90 LTVEENLLLGAYARR-R---------------------AK--------------RKARLERVYELFPRLKERRKQLAGT- 132 (222)
T ss_pred CcHHHHHHHHhhhcC-c---------------------hh--------------HHHHHHHHHHHHHhhhhhhhCchhh-
Confidence 999999988643211 0 00 001233456666 477767777766
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|+
T Consensus 133 ----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~ 206 (222)
T cd03224 133 ----LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLE 206 (222)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEee
Confidence 999999999999999999999999999999999999999999999876 467777776654 57889999999999
Q ss_pred CCeEEEecChhHHH
Q 000615 419 EGQIVYQGPRDNVL 432 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1389)
+|++++.|+.+++.
T Consensus 207 ~G~i~~~~~~~~~~ 220 (222)
T cd03224 207 RGRVVLEGTAAELL 220 (222)
T ss_pred CCeEEEeCCHHHHh
Confidence 99999999987763
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=327.85 Aligned_cols=195 Identities=26% Similarity=0.392 Sum_probs=164.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 93 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPT---SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL 93 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCC---ceeEEECCEehhhcchhHHHHHHhhcEEEEeecccc
Confidence 46999999999999999999999999999999999999887 9999999998765431 3579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
++.+||+||+.++....+.. .. .....++.+++.+||++..++.++
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 139 (218)
T cd03255 94 LPDLTALENVELPLLLAGVP----------KK------------------------ERRERAEELLERVGLGDRLNHYPS 139 (218)
T ss_pred CCCCcHHHHHHHHHhhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhcChh
Confidence 99999999998864332110 00 001135668889999888888876
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|++++
T Consensus 140 ~-----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~ 212 (218)
T cd03255 140 E-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE 212 (218)
T ss_pred h-----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence 6 99999999999999999999999999999999999999999999997644678888877764 454 9999999
Q ss_pred EcCCeE
Q 000615 417 LSEGQI 422 (1389)
Q Consensus 417 L~~G~i 422 (1389)
|++|++
T Consensus 213 l~~G~i 218 (218)
T cd03255 213 LRDGKI 218 (218)
T ss_pred eeCCcC
Confidence 999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=329.96 Aligned_cols=207 Identities=23% Similarity=0.272 Sum_probs=167.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhh-hheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF-ARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~-~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|.....+.+|+|.++|.+... ... +..++|++|++.+++.+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 46999999999999999999999999999999999973111357999999987542 122 23489999999999999
Q ss_pred CHHHHHHHHHHhhcCC----CCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 956 TVYESLLYSAWLRLSS----DVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~----~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
|++|++.+........ ....++..+.++++++.++|. +..+..++ ..|||||||||+||++|+.+|++|+|
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----EGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----cCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999998764322110 112233345688999999997 45555432 24999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hCeEEEEecCcEEEEecCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||||+|||+.++..+.+.|+++.++|+|||++||+++ .+... +|++++|. +|++++.|+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~-~G~i~~~g~~ 229 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLL-DGRIVKSGDV 229 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEe-CCEEEEecCH
Confidence 9999999999999999999999877899999999976 45555 79999997 5899988874
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=331.32 Aligned_cols=217 Identities=25% Similarity=0.300 Sum_probs=177.0
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|+++++||++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 367788876542 246999999999999999999999999999999999976532 2479999999
Q ss_pred ccCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.++. ...+++.++|++|++.+++.+||.||+.+....+.. ....++..+.++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 8753 123456799999999999999999999886543211 1122334456788999999853 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999976 5677899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |++++.|+.
T Consensus 223 ~-G~i~~~~~~ 232 (253)
T PRK14267 223 L-GKLIEVGPT 232 (253)
T ss_pred C-CEEEEeCCH
Confidence 5 899998875
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=331.13 Aligned_cols=215 Identities=23% Similarity=0.296 Sum_probs=175.0
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|||++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 73 (254)
T PRK14273 7 IIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEG 73 (254)
T ss_pred eEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECC
Confidence 478888876542 245999999999999999999999999999999999975431 2479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~ 1001 (1389)
.++.. ...++.++|++|++.+++ +||+||+.+....... ......++.++++++.+++. +..++.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (254)
T PRK14273 74 KNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTN--- 147 (254)
T ss_pred EecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCC---
Confidence 87531 235677999999988775 8999999886543211 12233455688899998873 233443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
++.||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++. +++|||+++|+++ ++.+.+|++++|.
T Consensus 148 --~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~sH~~~-~~~~~~d~i~~l~ 223 (254)
T PRK14273 148 --ALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK-ESYTIIIVTHNMQ-QAGRISDRTAFFL 223 (254)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 46899999999999999999999999999999999999999999999996 4799999999986 5678899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+|+++..|+.
T Consensus 224 -~G~i~~~g~~ 233 (254)
T PRK14273 224 -NGCIEEESST 233 (254)
T ss_pred -CCEEEEeCCH
Confidence 4899988874
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=331.47 Aligned_cols=214 Identities=26% Similarity=0.331 Sum_probs=175.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 12 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 78 (258)
T PRK14268 12 QIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEG 78 (258)
T ss_pred eEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECC
Confidence 577888876432 24699999999999999999999999999999999997542 12589999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ..+++.++|++|++.+++ +|++||+.+....+ ....++.++.++++++.+++.+ ..++.
T Consensus 79 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 151 (258)
T PRK14268 79 EDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSP--- 151 (258)
T ss_pred EEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCC---
Confidence 87532 234567999999988887 89999998865432 1223344456888999998842 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..|||||||||+|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ |+|||+++|+++ ++.+.+|++++|.
T Consensus 152 --~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l~ 227 (258)
T PRK14268 152 --ALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFFL 227 (258)
T ss_pred --hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 899999999976 5667899999997
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+|++++.|+.
T Consensus 228 -~G~i~~~~~~ 237 (258)
T PRK14268 228 -MGELIEFGQT 237 (258)
T ss_pred -CCEEEEeCCH
Confidence 4899998875
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=345.35 Aligned_cols=208 Identities=23% Similarity=0.301 Sum_probs=177.1
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCe----eCCCCCc-------CceEEEe
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH----ELNEFVP-------QRTCAYI 250 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~----~~~~~~~-------~~~~~yv 250 (1389)
....+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+ ++..... ++.++||
T Consensus 35 g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~---~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 35 GLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVS---RGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 4567999999999999999999999999999999999999987 999999996 3333221 2479999
Q ss_pred cCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccc
Q 000615 251 SQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC 330 (1389)
Q Consensus 251 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~ 330 (1389)
+|++.+++.+||+||+.|+....+... .+ ....++++++.+||++.
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~----------~~------------------------~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPE----------AE------------------------RRKRVDEQLELVGLAQW 157 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCH----------HH------------------------HHHHHHHHHHHcCCchh
Confidence 999999999999999998754332110 00 01235678899999988
Q ss_pred ccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhh
Q 000615 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1389)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~ 410 (1389)
.|+.+++ |||||||||+|||||+.+|+||||||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ..++.++
T Consensus 158 ~~~~~~~-----LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHd-l~e~~~l 231 (382)
T TIGR03415 158 ADKKPGE-----LSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHD-LDEALKI 231 (382)
T ss_pred hcCChhh-----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHh
Confidence 8888876 999999999999999999999999999999999999999999999977557777777665 4588899
Q ss_pred cCeEEEEcCCeEEEecChhHHH
Q 000615 411 FDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 411 ~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|+|++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-35 Score=334.87 Aligned_cols=214 Identities=23% Similarity=0.363 Sum_probs=178.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++ ++..+|+||||+|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~ 69 (277)
T PRK13652 4 IETRDLCYSYS------------GSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK--PTSGSVLIRGEPIT 69 (277)
T ss_pred EEEEEEEEEeC------------CCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECC
Confidence 56777776542 12359999999999999999999999999999999999765 35899999998753
Q ss_pred h---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
. ...++.+||++|++. .+...||.||+.+..... ....+..++.++++++.++|.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (277)
T PRK13652 70 KENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP-----HHLSGG 141 (277)
T ss_pred cCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccCCHH
Confidence 2 345567999999974 334679999998765322 2334444567899999999988777764 579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||++||++|+.+|++|+|||||+|||+.++..+.+.++++.++ |+|||++||+++ ++.+.||++++|++ |++++.
T Consensus 142 q~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~-G~i~~~ 219 (277)
T PRK13652 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDK-GRIVAY 219 (277)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CeEEEE
Confidence 999999999999999999999999999999999999999999765 899999999986 57788999999985 899999
Q ss_pred cCC
Q 000615 1090 GPL 1092 (1389)
Q Consensus 1090 g~~ 1092 (1389)
|+.
T Consensus 220 g~~ 222 (277)
T PRK13652 220 GTV 222 (277)
T ss_pred CCH
Confidence 875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=303.30 Aligned_cols=208 Identities=29% Similarity=0.444 Sum_probs=173.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcC---ceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~---~~~~yv~Q~d~~~~~l 260 (1389)
+.+|++||++++||||++|+||||||||||||+|+|.+.|+ +|++.+||++++.+.+. +.-+..+|+..+-...
T Consensus 14 r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~---~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 14 RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD---SGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCC---CCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 45899999999999999999999999999999999999987 99999999999888653 5668999998887778
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+|-+.++..-.+.+.. |. +...+++..|...++.+.+.+..-
T Consensus 91 tv~eVV~mGr~p~~~g~~-----------------~~---------------e~~~i~~~ala~~d~~~la~R~y~---- 134 (259)
T COG4559 91 TVQEVVQMGRIPHRSGRE-----------------PE---------------EDERIAAQALAATDLSGLAGRDYR---- 134 (259)
T ss_pred EHHHHHHhcccccccCCC-----------------ch---------------hhHHHHHHHHHHcChhhhhccchh----
Confidence 999999998654322210 00 012235667778888877766553
Q ss_pred cCCChhHhhHHHHHHHHhc------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 341 RGISGGQKKRVTTGEMLVG------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
.|||||||||.+||.|+. ++++||||||||+||...+..+++..|++++. +. .++.++|..+-+..++|+|
T Consensus 135 -~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~-g~-~V~~VLHDLNLAA~YaDri 211 (259)
T COG4559 135 -TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLARE-GG-AVLAVLHDLNLAAQYADRI 211 (259)
T ss_pred -hcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhc-CC-cEEEEEccchHHHHhhhee
Confidence 499999999999999973 45699999999999999999999999999985 44 4555566777888999999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (1389)
++|++|+++..|++++++.
T Consensus 212 vll~~Grv~a~g~p~~vlt 230 (259)
T COG4559 212 VLLHQGRVIASGSPQDVLT 230 (259)
T ss_pred eeeeCCeEeecCCHHHhcC
Confidence 9999999999999999863
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=338.28 Aligned_cols=216 Identities=21% Similarity=0.366 Sum_probs=173.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-------------------CcC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------------------VPQ 244 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------------------~~~ 244 (1389)
.++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.+. ..+
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSK---YGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELR 115 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCEEcccccccccccccccccccchHHHHH
Confidence 45999999999999999999999999999999999999987 99999999887542 124
Q ss_pred ceEEEecCCC--CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHH
Q 000615 245 RTCAYISQHD--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVL 322 (1389)
Q Consensus 245 ~~~~yv~Q~d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl 322 (1389)
+.++||+|++ .+++ .||+||+.|+....+.. .. +....++.++
T Consensus 116 ~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~----------~~------------------------~~~~~~~~~l 160 (320)
T PRK13631 116 RRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVK----------KS------------------------EAKKLAKFYL 160 (320)
T ss_pred hcEEEEEECchhcccc-chHHHHHHhhHHhcCCC----------HH------------------------HHHHHHHHHH
Confidence 6799999986 4554 59999998864321110 00 0011346678
Q ss_pred HHhCCc-ccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEe
Q 000615 323 KILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401 (1389)
Q Consensus 323 ~~lgL~-~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~ 401 (1389)
+.+||+ +..++.+.+ |||||||||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ .+.|+|++.|
T Consensus 161 ~~~gL~~~~~~~~~~~-----LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 161 NKMGLDDSYLERSPFG-----LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred HHcCCChhHhcCCccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 899997 456666654 999999999999999999999999999999999999999999999875 4678777766
Q ss_pred cCcchHHhhcCeEEEEcCCeEEEecChhHHHH---HHHhcCCCCCC
Q 000615 402 QPAPETYDLFDDIILLSEGQIVYQGPRDNVLE---FFEHMGFKCPE 444 (1389)
Q Consensus 402 q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~~---~F~~lG~~~p~ 444 (1389)
++ .++.+++|+|++|++|++++.|+++++.. .++..|..+|.
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 54 46778999999999999999999998742 34455555544
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=331.88 Aligned_cols=213 Identities=28% Similarity=0.395 Sum_probs=176.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++ ++.+|+|+|++|++|++++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--p~~G~i~~~g~~~~ 67 (258)
T PRK13548 3 LEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS--PDSGEVRLNGRPLA 67 (258)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEEcc
Confidence 56677765442 3469999999999999999999999999999999999755 34799999998653
Q ss_pred h---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
. ...++.++|++|++.+++.+||+||+.+..... ....+..++.++++++.+++.+..+..+ ..|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGe 139 (258)
T PRK13548 68 DWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY-----PQLSGGE 139 (258)
T ss_pred cCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHH
Confidence 2 234567999999998888899999998754221 1112233456889999999987777764 4799999
Q ss_pred HHHHHHHHHHh------hCCCCceeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1012 RKRLTIAVELV------ANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1012 rqRl~ia~aL~------~~p~illLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. ++.+.+|++++|.+ |
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G 217 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQ-G 217 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEEC-C
Confidence 99999999999 5999999999999999999999999999987 67899999999976 56778999999985 7
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 218 ~i~~~~~~ 225 (258)
T PRK13548 218 RLVADGTP 225 (258)
T ss_pred EEEeeCCH
Confidence 89888875
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=348.25 Aligned_cols=202 Identities=22% Similarity=0.289 Sum_probs=173.7
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hh----hhheeeEeccCCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET----FARVSGYCEQNDIH 951 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~----~~~~~gyv~Q~~~~ 951 (1389)
...+|+|+||+|++||+++|+||||||||||+++|+|...+ .+|+|.++|.++.. .. .++.+||++|++.+
T Consensus 40 ~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p--~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 40 LSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP--TRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred CeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC--CCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 34589999999999999999999999999999999997653 47999999987542 11 13469999999999
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 952 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
++.+||+||+.|....+. ...++..+++.++++.++|.+..++. +..|||||||||+|||||+.+|+|||||
T Consensus 118 ~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~-----~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSY-----PDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999999999998765432 22344556789999999998877776 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||+|||+.++..+++.|+++.+ .|+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dri~vL~~-G~i~~~g~~ 249 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDRIAIMQN-GEVVQVGTP 249 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCEEEEEEC-CEEEecCCH
Confidence 99999999999999999999875 4899999999976 57788999999985 899988875
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=323.91 Aligned_cols=198 Identities=26% Similarity=0.369 Sum_probs=166.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. ..++.++|++|++.+++.+||+
T Consensus 13 ~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~-~~~~~i~~~~q~~~~~~~~tv~ 88 (210)
T cd03269 13 VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPD---SGEVLFDGKPLDI-AARNRIGYLPEERGLYPKMKVI 88 (210)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCCchhH-HHHccEEEeccCCcCCcCCcHH
Confidence 46999999999999999999999999999999999999887 9999999987754 2356799999999999999999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
||+.+.....+.. . .+ ....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 129 (210)
T cd03269 89 DQLVYLAQLKGLK----------K----------EE--------------ARRRIDEWLERLELSEYANKRVEE-----L 129 (210)
T ss_pred HHHHHHHHHcCCC----------h----------HH--------------HHHHHHHHHHHcCChHHHhCcHhh-----C
Confidence 9998754322110 0 00 012356678899998888887766 9
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEE
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv 423 (1389)
||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++.+++|++++|++|+++
T Consensus 130 S~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~-~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~ 207 (210)
T cd03269 130 SKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQM-ELVEELCDRVLLLNKGRAV 207 (210)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEECCCH-HHHHHhhhEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999998753 66777766654 4788899999999999998
Q ss_pred Eec
Q 000615 424 YQG 426 (1389)
Q Consensus 424 ~~G 426 (1389)
+.|
T Consensus 208 ~~~ 210 (210)
T cd03269 208 LYG 210 (210)
T ss_pred ecC
Confidence 765
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=326.25 Aligned_cols=201 Identities=19% Similarity=0.289 Sum_probs=168.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|+++|+++..... ++.++|++|++.+
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~ 98 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPT---SGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHL 98 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCCHHHHHHHHhccEEEEecCccc
Confidence 46999999999999999999999999999999999999887 9999999998865432 2469999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
++.+||+||+.+.....+.. .. +....++.+++.+||++..++.++
T Consensus 99 ~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 99 LPDFTALENVAMPLLIGKKK----------PA------------------------EINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred CCCCCHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchhhhCChh
Confidence 99999999998864321100 00 001235668889999887787776
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
+ |||||||||+||+|++.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++. ++.. +|++++
T Consensus 145 ~-----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~~~ 217 (233)
T PRK11629 145 E-----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQLE 217 (233)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEEEE
Confidence 5 99999999999999999999999999999999999999999999987645678888777664 4544 689999
Q ss_pred EcCCeEEEecCh
Q 000615 417 LSEGQIVYQGPR 428 (1389)
Q Consensus 417 L~~G~iv~~G~~ 428 (1389)
|++|+++..|+.
T Consensus 218 l~~G~i~~~~~~ 229 (233)
T PRK11629 218 MRDGRLTAELSL 229 (233)
T ss_pred EECCEEEEEecc
Confidence 999999988864
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-35 Score=334.67 Aligned_cols=214 Identities=26% Similarity=0.321 Sum_probs=178.9
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 6 l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p--~~G~i~~~g~~i~ 72 (279)
T PRK13635 6 IRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP--EAGTITVGGMVLS 72 (279)
T ss_pred EEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC--CCcEEEECCEECC
Confidence 677887765421 124599999999999999999999999999999999997653 4899999998764
Q ss_pred h---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 Q---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
. ...++.+||++|++. .++..||.||+.+..... ..+.++..+.+.++++.++|.+..+..+ ..||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~G 144 (279)
T PRK13635 73 EETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP-----HRLSGG 144 (279)
T ss_pred cCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCCHH
Confidence 3 234567999999974 667789999998865432 2233444567899999999988877764 479999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||++||++|+.+|+||||||||+|||+.++..+++.|++++++ |+|||+++|+++ ++ ..+|++++|.+ |++++.
T Consensus 145 ~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~-~~~d~i~~l~~-G~i~~~ 221 (279)
T PRK13635 145 QKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EA-AQADRVIVMNK-GEILEE 221 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HH-HcCCEEEEEEC-CEEEEE
Confidence 999999999999999999999999999999999999999999876 899999999976 34 46999999984 899999
Q ss_pred cCC
Q 000615 1090 GPL 1092 (1389)
Q Consensus 1090 g~~ 1092 (1389)
|+.
T Consensus 222 g~~ 224 (279)
T PRK13635 222 GTP 224 (279)
T ss_pred CCH
Confidence 875
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-35 Score=334.12 Aligned_cols=201 Identities=25% Similarity=0.370 Sum_probs=169.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-----hhhhheeeEeccCCCC-CC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH-SP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~-~~ 953 (1389)
+.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.. ..
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR--PQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIF 91 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCccEEEECCEEcccccCCHHHHHhheEEEeeChhhccc
Confidence 459999999999999999999999999999999999765 347999999987531 2345679999999753 34
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
..|+.||+.+....+ ....++..+.++++++.+++.+..++. +..||||||||++||++|+.+|+||+||||
T Consensus 92 ~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 92 YTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQP-----IQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCC-----chhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 568999998764332 122334445688999999998877765 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 220 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQ-GQILTHGAP 220 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999877999999999976 56678999999985 899998875
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=326.95 Aligned_cols=204 Identities=23% Similarity=0.346 Sum_probs=167.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc-----CCCCCceeEEEECCeeCCCCC-----cCceEEEecCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL-----GKDLRASGKITYCGHELNEFV-----PQRTCAYISQH 253 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~-----~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~ 253 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.... .++.++|++|+
T Consensus 13 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD---EGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC---CeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 36999999999999999999999999999999999998 665 899999999875432 24579999999
Q ss_pred CCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccc
Q 000615 254 DLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1389)
Q Consensus 254 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 333 (1389)
+.++ .+||+||+.++.+..+... . + +....++.+++.+||++..+.
T Consensus 90 ~~~~-~~tv~e~l~~~~~~~~~~~---------~-----------~-------------~~~~~~~~~l~~~~l~~~~~~ 135 (227)
T cd03260 90 PNPF-PGSIYDNVAYGLRLHGIKL---------K-----------E-------------ELDERVEEALRKAALWDEVKD 135 (227)
T ss_pred chhc-cccHHHHHHhHHHhcCCCc---------H-----------H-------------HHHHHHHHHHHHcCCChHHhc
Confidence 8888 7999999988643221100 0 0 001234567889999877666
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+. .+.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. .|+|++.|++ .++.+++|+
T Consensus 136 ~~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~--~tii~~sH~~-~~~~~~~d~ 209 (227)
T cd03260 136 RLH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNM-QQAARVADR 209 (227)
T ss_pred cCC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC--cEEEEEeccH-HHHHHhCCE
Confidence 540 1349999999999999999999999999999999999999999999998763 6777766654 578889999
Q ss_pred EEEEcCCeEEEecChhH
Q 000615 414 IILLSEGQIVYQGPRDN 430 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~ 430 (1389)
|++|++|++++.|++++
T Consensus 210 i~~l~~G~i~~~g~~~~ 226 (227)
T cd03260 210 TAFLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEEEeCCEEEEecCccc
Confidence 99999999999998765
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=346.76 Aligned_cols=209 Identities=25% Similarity=0.408 Sum_probs=176.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|+.+++||+++|+||||||||||||+|+|.++|. +|+|.++|+++..... ++.++||+|++.+++.+
T Consensus 16 ~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~---sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~ 92 (402)
T PRK09536 16 TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT---AGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF 92 (402)
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC
Confidence 46999999999999999999999999999999999999987 9999999998876432 46799999999998899
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+||+.++...... ++.. .. ......+++.++.+||.+..|+.+.+
T Consensus 93 tv~e~v~~~~~~~~~--~~~~--------------~~--------------~~~~~~v~~~le~vgl~~~~~~~~~~--- 139 (402)
T PRK09536 93 DVRQVVEMGRTPHRS--RFDT--------------WT--------------ETDRAAVERAMERTGVAQFADRPVTS--- 139 (402)
T ss_pred CHHHHHHhccchhcc--cccC--------------CC--------------HHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 999999885321100 0000 00 00122467789999999888888876
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
|||||||||.|||||+.+|++|+|||||+|||+.++.++.+.|+++++ .+.|+|++.|+ ..++.++||++++|++|
T Consensus 140 --LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHd-l~~~~~~adrii~l~~G 215 (402)
T PRK09536 140 --LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHD-LDLAARYCDELVLLADG 215 (402)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECC-HHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 46777776654 56888999999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
++++.|++++++
T Consensus 216 ~iv~~G~~~ev~ 227 (402)
T PRK09536 216 RVRAAGPPADVL 227 (402)
T ss_pred EEEEecCHHHHh
Confidence 999999999864
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=336.01 Aligned_cols=204 Identities=20% Similarity=0.204 Sum_probs=150.6
Q ss_pred CCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000615 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1389)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1389)
.|..+.+.++++.++. +..+++.+++..++.-...+++|+||+||||+++++.|..++ ..|-+.+.+
T Consensus 359 ~~p~l~i~~V~f~y~p-----------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~--~rgi~~~~~ 425 (582)
T KOG0062|consen 359 SPPNLRISYVAFEYTP-----------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP--TRGIVGRHP 425 (582)
T ss_pred CCCeeEEEeeeccCCC-----------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc--ccceeeecc
Confidence 4556777777754431 122689999999999999999999999999999999996542 356555443
Q ss_pred ccCChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCH
Q 000615 931 YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 931 ~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSg 1009 (1389)
+.+++|..|...-+-.+.|.+- .+-...+. .... +.+.+-+..+||.. ++... +.+|||
T Consensus 426 --------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~p--G~~~----ee~r~hl~~~Gl~g~la~~s-----i~~LSG 485 (582)
T KOG0062|consen 426 --------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFP--GKTE----EEIRRHLGSFGLSGELALQS-----IASLSG 485 (582)
T ss_pred --------cceecchhHhhhhHHHHHhHHH-HHHHHhCC--CCCH----HHHHHHHHhcCCCchhhhcc-----ccccCC
Confidence 4568999997665545555442 23233332 2222 33677888999864 22222 468999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
|||-||++|.....+|.+|+|||||+.||-.+-..+.++|++. +..||++||+.+ -+-..|+++.+..+|...-..
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~~-fi~~~c~E~Wvve~g~vt~ie 561 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDEE-FISSLCKELWVVEDGKVTPIE 561 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcHH-HHhhcCceeEEEcCCcEEeee
Confidence 9999999999999999999999999999999999999999886 567999999966 366789999999864433344
Q ss_pred cC
Q 000615 1090 GP 1091 (1389)
Q Consensus 1090 g~ 1091 (1389)
|.
T Consensus 562 g~ 563 (582)
T KOG0062|consen 562 GG 563 (582)
T ss_pred cc
Confidence 43
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=330.10 Aligned_cols=216 Identities=21% Similarity=0.301 Sum_probs=176.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1389)
++++|+++.++ .+.+|+|+|++|++||++||+||||||||||+++|+|...+. +.+|+|.++|.
T Consensus 5 l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 5 IDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred EEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 67778776542 246999999999999999999999999999999999975421 25899999998
Q ss_pred cCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccCC
Q 000615 932 PKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLP 1002 (1389)
Q Consensus 932 ~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~~ 1002 (1389)
+.. ....++.++|++|++.+++.+||+||+.+....+. ....+..++.++++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 145 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP---- 145 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC----
Confidence 753 12345679999999999999999999988654331 1123344556889999999842 23333
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe-
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK- 1081 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~- 1081 (1389)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|++++|.
T Consensus 146 -~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~~ 222 (258)
T PRK14241 146 -GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFNL 222 (258)
T ss_pred -cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEec
Confidence 457999999999999999999999999999999999999999999999864 689999999976 5778899999997
Q ss_pred ----cCcEEEEecCC
Q 000615 1082 ----RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ----~gG~~~~~g~~ 1092 (1389)
+.|++++.|+.
T Consensus 223 ~~~~~~g~i~~~~~~ 237 (258)
T PRK14241 223 EATGKPGRLVEIDDT 237 (258)
T ss_pred ccCCCCceEEecCCH
Confidence 25899998875
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-35 Score=322.48 Aligned_cols=192 Identities=28% Similarity=0.342 Sum_probs=161.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCC-CCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDL-HHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~-~~~~lTV 262 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.....++.++|++|++. .+..+||
T Consensus 13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES---SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEhhhHHhhcceEEEecChhhhhhhccH
Confidence 46999999999999999999999999999999999999887 9999999998754333467999999974 3456899
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+.....+ . ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~----------------------~----------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (205)
T cd03226 90 REELLLGLKELD----------------------A----------------GNEQAETVLKDLDLYALKERHPLS----- 126 (205)
T ss_pred HHHHhhhhhhcC----------------------c----------------cHHHHHHHHHHcCCchhcCCCchh-----
Confidence 999987532110 0 011246678899999888888876
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|++++.|++ .++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 127 LSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAI 204 (205)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999875 367877777665 477789999999999997
Q ss_pred E
Q 000615 423 V 423 (1389)
Q Consensus 423 v 423 (1389)
+
T Consensus 205 v 205 (205)
T cd03226 205 V 205 (205)
T ss_pred C
Confidence 5
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=332.29 Aligned_cols=216 Identities=25% Similarity=0.378 Sum_probs=177.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~ 259 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++. .++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~ 96 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE---AGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVG 96 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCcHHHHhhheEEEEeCHHHhccc
Confidence 35899999999999999999999999999999999999987 9999999998865432 357999999973 6667
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
.||.||+.++.+..+.. .. + ....++++++.+||++..++.+++
T Consensus 97 ~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~-- 140 (279)
T PRK13635 97 ATVQDDVAFGLENIGVP----------RE----------E--------------MVERVDQALRQVGMEDFLNREPHR-- 140 (279)
T ss_pred ccHHHHHhhhHhhCCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhCCccc--
Confidence 89999998864322110 00 0 012357788999999888888876
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l~~ 215 (279)
T PRK13635 141 ---LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVMNK 215 (279)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999998755778888877764 554 5999999999
Q ss_pred CeEEEecChhHHHH---HHHhcCCCCC
Q 000615 420 GQIVYQGPRDNVLE---FFEHMGFKCP 443 (1389)
Q Consensus 420 G~iv~~G~~~~~~~---~F~~lG~~~p 443 (1389)
|++++.|+.+++.. .+...|..+|
T Consensus 216 G~i~~~g~~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 216 GEILEEGTPEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred CEEEEECCHHHHhcCHHHHHHcCCCCC
Confidence 99999999988753 3444454443
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-35 Score=331.86 Aligned_cols=220 Identities=29% Similarity=0.381 Sum_probs=178.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1389)
-++++|+++.+ +++.+|+|+|+++++||+++|+||||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 4 ~l~~~nl~~~~-------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTF-------------NQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEe-------------CCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 36777777544 2356999999999999999999999999999999999976532 136999999986
Q ss_pred CCh--------hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-----CCCcHHHHHHHHHHHHHHcCCcccccccc
Q 000615 933 KNQ--------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMV 999 (1389)
Q Consensus 933 ~~~--------~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~ 999 (1389)
... ...++.++|++|++.+++.+||.||+.+......+ .....++...+++++++.+++.+..+..+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 532 23356799999999999999999999875321000 01112234456899999999987777653
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEE
Q 000615 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1078 (1389)
Q Consensus 1000 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l 1078 (1389)
..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++
T Consensus 151 -----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 -----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred -----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 479999999999999999999999999999999999999999999999754 899999999976 4778899999
Q ss_pred EEecCcEEEEecCCC
Q 000615 1079 LLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1079 ~l~~gG~~~~~g~~~ 1093 (1389)
+|.+ |++++.|+..
T Consensus 225 ~l~~-g~i~~~g~~~ 238 (262)
T PRK09984 225 ALRQ-GHVFYDGSSQ 238 (262)
T ss_pred EEEC-CEEEEeCCHH
Confidence 9985 7899988864
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=322.74 Aligned_cols=194 Identities=26% Similarity=0.355 Sum_probs=163.5
Q ss_pred cceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCCCHHHHHHH
Q 000615 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1389)
Q Consensus 885 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~l~f 963 (1389)
|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+||+||+.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET--PQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhc
Confidence 9999999999999999999999999999999765 347999999987532 1234679999999999999999999987
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHH
Q 000615 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1389)
Q Consensus 964 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1043 (1389)
....+. .. .+..++.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~ 165 (211)
T cd03298 94 GLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRA 165 (211)
T ss_pred cccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 543211 11 1233456889999999988777663 579999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
.+++.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++.|
T Consensus 166 ~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~~ 211 (211)
T cd03298 166 EMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDN-GRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEEC-CEEeecC
Confidence 999999998754 899999999976 56678999999985 7877653
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=328.31 Aligned_cols=203 Identities=26% Similarity=0.341 Sum_probs=169.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh----hhhheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.... ..++.++|++|++.+++.+
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 92 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP--DEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL 92 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCCC
Confidence 4699999999999999999999999999999999997653 479999999865321 1234699999999999999
Q ss_pred CHHHHHHHHHHhhcC-----CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 956 TVYESLLYSAWLRLS-----SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~-----~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
||+||+.+....... .....+..++.++++++.+++.+..+..+ +.||||||||++||++|+.+|++|+|
T Consensus 93 tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Ge~qrv~laral~~~p~~lll 167 (242)
T TIGR03411 93 TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLA-----GLLSHGQKQWLEIGMLLMQDPKLLLL 167 (242)
T ss_pred CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 999999885432110 00112234456899999999987776653 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.||++++|.+ |+++..|+.
T Consensus 168 DEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~-g~~~~~~~~ 226 (242)
T TIGR03411 168 DEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQ-GSVLAEGSL 226 (242)
T ss_pred cCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEeeCCH
Confidence 999999999999999999999875 799999999976 57778999999985 888888874
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-35 Score=344.14 Aligned_cols=205 Identities=22% Similarity=0.323 Sum_probs=175.6
Q ss_pred cccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCc----cCC---hhh---hh-heeeEe
Q 000615 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY----PKN---QET---FA-RVSGYC 945 (1389)
Q Consensus 877 ~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~----~~~---~~~---~~-~~~gyv 945 (1389)
++...+|+|+||+|++||+++|+|+||||||||+++|+|... +.+|+|.++|. +.. ... ++ +.++||
T Consensus 34 ~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~--p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 34 TGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP--VSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 345679999999999999999999999999999999999765 34799999995 221 111 22 469999
Q ss_pred ccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCC
Q 000615 946 EQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1389)
Q Consensus 946 ~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p 1025 (1389)
+|++.++|.+||+||+.|....+ .....+..+.+.++++.++|.+..+..+ ..||||||||++|||+|+.+|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~~~~~~-----~~LSgGq~QRV~LARALa~~P 183 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQWADKKP-----GELSGGMQQRVGLARAFAMDA 183 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999875443 2334555677899999999988877764 479999999999999999999
Q ss_pred CCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1026 ~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+||+|||||+|||+.++..+++.|+++.++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+..
T Consensus 184 ~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l~DrI~vl~~-G~iv~~g~~~ 250 (382)
T TIGR03415 184 DILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKIGNRIAIMEG-GRIIQHGTPE 250 (382)
T ss_pred CEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEecCHH
Confidence 999999999999999999999999999765 899999999986 57789999999985 8999999863
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=334.24 Aligned_cols=205 Identities=20% Similarity=0.299 Sum_probs=170.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-------cCceEEEecCCC--
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 254 (1389)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPT---TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPES 96 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhheEEEecChHh
Confidence 45999999999999999999999999999999999999987 899999999885421 245799999986
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 333 (1389)
.+++ .||.||+.|+....+.. .. +....++.+++.+||+ +..++
T Consensus 97 ~l~~-~tv~e~i~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~ 141 (286)
T PRK13646 97 QLFE-DTVEREIIFGPKNFKMN----------LD------------------------EVKNYAHRLLMDLGFSRDVMSQ 141 (286)
T ss_pred ccch-hhHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhhhhC
Confidence 3454 59999998864321110 00 0112356678899997 67777
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+.+ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++.+..+.|++++.|+. .++.+++|+
T Consensus 142 ~~~~-----LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dr 215 (286)
T PRK13646 142 SPFQ-----MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADE 215 (286)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCE
Confidence 7765 9999999999999999999999999999999999999999999999765567777776654 478889999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|++++.|+++++.
T Consensus 216 i~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 216 VIVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998864
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=331.16 Aligned_cols=217 Identities=27% Similarity=0.366 Sum_probs=177.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+ +++.+|+|||+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~-------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGY-------------GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT--PQSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEE-------------CCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCCcEEEECCEEhH
Confidence 5667766543 23469999999999999999999999999999999999754 34799999998653
Q ss_pred h---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
. ...++.++|++|++.+++.+|+.||+.+....... .....+...+.++++++.+++.+..+.. +..||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G 142 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRR-----LTDLSGG 142 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCC-----cccCCHH
Confidence 2 23456799999999888889999999875211000 0111123345678999999998777765 3579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 143 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~ 220 (255)
T PRK11231 143 QRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN-GHVMAQG 220 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC-CeEEEEc
Confidence 999999999999999999999999999999999999999998877999999999986 67789999999985 7898888
Q ss_pred CCC
Q 000615 1091 PLG 1093 (1389)
Q Consensus 1091 ~~~ 1093 (1389)
+..
T Consensus 221 ~~~ 223 (255)
T PRK11231 221 TPE 223 (255)
T ss_pred CHH
Confidence 754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=323.22 Aligned_cols=173 Identities=25% Similarity=0.321 Sum_probs=135.2
Q ss_pred eecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHHHHH
Q 000615 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1389)
Q Consensus 883 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 962 (1389)
|+==.++|..||+++++||||-||||+.++|||...+ .+|. . ..-.++|=||--.--...||++-|.
T Consensus 357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP--deg~----~-------~~~~vSyKPQyI~~~~~gtV~~~l~ 423 (591)
T COG1245 357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP--DEGS----E-------EDLKVSYKPQYISPDYDGTVEDLLR 423 (591)
T ss_pred EEecCCeeecceEEEEECCCCcchHHHHHHHhccccC--CCCC----C-------ccceEeecceeecCCCCCcHHHHHH
Confidence 3334568899999999999999999999999996553 2443 1 0123678888655556789999775
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHH
Q 000615 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1389)
Q Consensus 963 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~ 1042 (1389)
-...-+... .-...++++-++|.++.++.+ .+|||||.|||+||.+|.++.+|.+||||++.||.+.+
T Consensus 424 ~~~~~~~~~-------s~~~~ei~~pl~l~~i~e~~v-----~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR 491 (591)
T COG1245 424 SAIRSAFGS-------SYFKTEIVKPLNLEDLLERPV-----DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQR 491 (591)
T ss_pred Hhhhhhccc-------chhHHhhcCccchHHHHhccc-----ccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHH
Confidence 432211111 123467888999999988875 48999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1043 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1043 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
..+-+.||+...+ ++|.+++-||..+ +--..|++++..
T Consensus 492 ~~vakvIRR~~e~~~kta~vVdHDi~~-~dyvsDr~ivF~ 530 (591)
T COG1245 492 IIVAKVIRRFIENNEKTALVVDHDIYM-IDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHHHhhcCceEEEEecceeh-hhhhhceEEEEe
Confidence 9999999998754 7899999999763 555678888775
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=331.50 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=173.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++|++|++.++
T Consensus 20 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 20 RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD---HGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 45999999999999999999999999999999999999887 899999999876432 135699999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||.||+.+....... ....+ ....++.+++.+||++..++.+++
T Consensus 97 ~~~tv~enl~~~~~~~~~---------~~~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~ 143 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQ---------LPAPL------------------------LHSTVMMKLEAVGLRGAAKLMPSE 143 (269)
T ss_pred CCCCHHHHHHHHHHHccC---------CCHHH------------------------HHHHHHHHHHHcCChhhhhCChhh
Confidence 999999999875321100 00000 011245678899999888888876
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|
T Consensus 144 -----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l 217 (269)
T PRK11831 144 -----LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIV 217 (269)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEE
Confidence 9999999999999999999999999999999999999999999998765467777776654 5788899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 218 ADKKIVAHGSAQALQ 232 (269)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988764
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=379.02 Aligned_cols=206 Identities=25% Similarity=0.324 Sum_probs=171.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 492 ~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 567 (710)
T TIGR03796 492 PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPW---SGEILFDGIPREEIPREVLANSVAMVDQDIFLFE-G 567 (710)
T ss_pred CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEeHHHCCHHHHHhheeEEecCChhhh-c
Confidence 45999999999999999999999999999999999999997 9999999999877653 578999999999885 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++.. +.+.++..+++...+. +.. .-.|++..||.+|+ .+
T Consensus 568 Ti~eNi~l~~~-------------------------~~~~~~i~~al~~~~l------~~~--i~~lp~gl~t~i~e-~G 613 (710)
T TIGR03796 568 TVRDNLTLWDP-------------------------TIPDADLVRACKDAAI------HDV--ITSRPGGYDAELAE-GG 613 (710)
T ss_pred cHHHHhhCCCC-------------------------CCCHHHHHHHHHHhCC------HHH--HHhCcCcccceecc-CC
Confidence 99999987421 1111222222222211 111 12477889999996 46
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
++||||||||++||||++++|+||+||||||+||+.++.++.+.|++ .++|+|+..|++ ++...+|+|++|++|
T Consensus 614 ~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~Iivl~~G 687 (710)
T TIGR03796 614 ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDEIIVLERG 687 (710)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 77999999999999999999999999999999999999999999986 368888888776 567889999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++++++
T Consensus 688 ~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 688 KVVQRGTHEELWA 700 (710)
T ss_pred EEEEecCHHHHHH
Confidence 9999999999875
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=325.10 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=172.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc--CceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP--QRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~--~~~~~yv~Q~d~~~~~lT 261 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... .+.++|++|++.+++.+|
T Consensus 14 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 14 RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQ---EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 46999999999999999999999999999999999999887 9999999998754322 247999999998888999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+.....+.. ..+ ....++.+++.+||++..++.+++
T Consensus 91 ~~~~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 132 (236)
T TIGR03864 91 VRQNLRYHAALHGLS----------RAE------------------------ARERIAALLARLGLAERADDKVRE---- 132 (236)
T ss_pred HHHHHHHHHHhcCCC----------HHH------------------------HHHHHHHHHHHcCChhhhcCChhh----
Confidence 999998754321100 000 011245678889999888888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++. .+|++++|++|+
T Consensus 133 -LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~-~~d~i~~l~~G~ 209 (236)
T TIGR03864 133 -LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVD-EIE-ADDRLVVLHRGR 209 (236)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChh-hHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999987645678877777664 554 599999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
+++.|+.+++.+
T Consensus 210 i~~~~~~~~~~~ 221 (236)
T TIGR03864 210 VLADGAAAELRG 221 (236)
T ss_pred EEEeCCHHHHHH
Confidence 999999887753
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-35 Score=321.68 Aligned_cols=195 Identities=29% Similarity=0.418 Sum_probs=166.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-CcCceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-VPQRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV 262 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++.+||
T Consensus 13 ~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 13 KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPD---SGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 46999999999999999999999999999999999999887 99999999876542 123579999999999999999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+.....+. ....++.+++.+||++..++.+++
T Consensus 90 ~e~l~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (208)
T cd03268 90 RENLRLLARLLGI--------------------------------------RKKRIDEVLDVVGLKDSAKKKVKG----- 126 (208)
T ss_pred HHHHHHHHHhcCC--------------------------------------cHHHHHHHHHHcCCHHHHhhhHhh-----
Confidence 9999875321110 011245678889998888887776
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i 204 (208)
T cd03268 127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKL 204 (208)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876 467777776654 477789999999999999
Q ss_pred EEec
Q 000615 423 VYQG 426 (1389)
Q Consensus 423 v~~G 426 (1389)
++.|
T Consensus 205 ~~~g 208 (208)
T cd03268 205 IEEG 208 (208)
T ss_pred EecC
Confidence 8765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=332.04 Aligned_cols=218 Identities=29% Similarity=0.388 Sum_probs=178.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..++ ++.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 11 ~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP--PSEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEeh
Confidence 467888776442 2469999999999999999999999999999999999765 3479999999764
Q ss_pred C---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
. ...+++.++|++|++.+++.+|+.||+.+....... ........++.++++++.+++.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 150 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLV-----DSLSG 150 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCCH
Confidence 3 234456799999998888999999999875321110 00111223456889999999987767664 47999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
||||||+||++|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |++++
T Consensus 151 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~-G~i~~ 228 (265)
T PRK10575 151 GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRG-GEMIA 228 (265)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CeEEE
Confidence 9999999999999999999999999999999999999999999765 899999999976 57788999999984 88998
Q ss_pred ecCCC
Q 000615 1089 AGPLG 1093 (1389)
Q Consensus 1089 ~g~~~ 1093 (1389)
.|+..
T Consensus 229 ~~~~~ 233 (265)
T PRK10575 229 QGTPA 233 (265)
T ss_pred ecCHH
Confidence 88753
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=331.85 Aligned_cols=219 Identities=23% Similarity=0.298 Sum_probs=180.0
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..+.++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP--AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC--CCcEEEECCEE
Confidence 3577888876552 24699999999999999999999999999999999997653 47999999987
Q ss_pred CCh---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000615 933 KNQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 933 ~~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 1008 (1389)
... ...++.++|++|++.+++.+|++|++.+...-..+ .....+..++.++++++.++|.+..++. +..||
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS 145 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQS-----VDTLS 145 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----cccCC
Confidence 532 33456799999999998999999999875211100 0001123345688999999998777765 45799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+|++++|. +|+++
T Consensus 146 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~-~G~i~ 223 (265)
T PRK10253 146 GGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALR-EGKIV 223 (265)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 5788999999998 48999
Q ss_pred EecCCC
Q 000615 1088 YAGPLG 1093 (1389)
Q Consensus 1088 ~~g~~~ 1093 (1389)
+.|+..
T Consensus 224 ~~g~~~ 229 (265)
T PRK10253 224 AQGAPK 229 (265)
T ss_pred EeCCHH
Confidence 988853
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=324.45 Aligned_cols=204 Identities=34% Similarity=0.517 Sum_probs=169.9
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC---CCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG---KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~---~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 259 (1389)
.+++|+|+|+++++||+++|+||||||||||+++|+|.++ ++ +|+|.++|+++.....++.++|++|++.+++.
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~ 95 (226)
T cd03234 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTT---SGQILFNGQPRKPDQFQKCVAYVRQDDILLPG 95 (226)
T ss_pred ccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCC---ceEEEECCEECChHHhcccEEEeCCCCccCcC
Confidence 3569999999999999999999999999999999999998 65 89999999987643345789999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHH-HHHHhCCcccccccccCc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY-VLKILGLDICADTMVGDE 338 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-vl~~lgL~~~~dt~vg~~ 338 (1389)
+||+||+.|+......... . .+. .....+. .++.+++++..++.+++
T Consensus 96 ~tv~enl~~~~~~~~~~~~-----------------~-~~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~- 143 (226)
T cd03234 96 LTVRETLTYTAILRLPRKS-----------------S-DAI-------------RKKRVEDVLLRDLALTRIGGNLVKG- 143 (226)
T ss_pred CcHHHHHHHHHHhhccccc-----------------c-hHH-------------HHHHHHHHHHHhhcchhhhcccccC-
Confidence 9999999986443211000 0 000 0011233 77888888777777765
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+. +.|++++.|++..++.+++|++++|+
T Consensus 144 ----LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~i~~l~ 218 (226)
T cd03234 144 ----ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARR-NRIVILTIHQPRSDLFRLFDRILLLS 218 (226)
T ss_pred ----cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecCCCHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998753 77888888887668999999999999
Q ss_pred CCeEEEec
Q 000615 419 EGQIVYQG 426 (1389)
Q Consensus 419 ~G~iv~~G 426 (1389)
+|+++++|
T Consensus 219 ~G~i~~~g 226 (226)
T cd03234 219 SGEIVYSG 226 (226)
T ss_pred CCEEEecC
Confidence 99999876
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=375.58 Aligned_cols=208 Identities=25% Similarity=0.435 Sum_probs=174.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 478 ~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~---~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~ 553 (694)
T TIGR03375 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPT---EGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFY-G 553 (694)
T ss_pred ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhccEEECCChhhhh-h
Confidence 35899999999999999999999999999999999999997 9999999999987654 578999999999886 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++.. +.+.++..+++...+. +.. .-.|++..||.+|+ .+
T Consensus 554 TI~eNi~~~~~-------------------------~~~~~~i~~a~~~~~l------~~~--i~~lp~gl~T~i~e-~G 599 (694)
T TIGR03375 554 TLRDNIALGAP-------------------------YADDEEILRAAELAGV------TEF--VRRHPDGLDMQIGE-RG 599 (694)
T ss_pred hHHHHHhCCCC-------------------------CCCHHHHHHHHHHcCh------HHH--HHhCcccccceecC-CC
Confidence 99999987521 1112222333332221 111 12478899999996 46
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
..||||||||++||||++.+|++++||||||+||+.++.++.+.|+++.+ ++|+|+..|++ ++.+.||+|++|++|
T Consensus 600 ~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~iivl~~G 675 (694)
T TIGR03375 600 RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRIIVMDNG 675 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEEEEEeCC
Confidence 67999999999999999999999999999999999999999999998764 67888888876 567899999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++|+++
T Consensus 676 ~i~e~G~~~eLl~ 688 (694)
T TIGR03375 676 RIVADGPKDQVLE 688 (694)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=327.78 Aligned_cols=221 Identities=25% Similarity=0.357 Sum_probs=175.5
Q ss_pred CceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEEE
Q 000615 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKI 928 (1389)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i 928 (1389)
|..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34578888887552 2459999999999999999999999999999999999632 1 124799999
Q ss_pred cCccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000615 929 SGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003 (1389)
Q Consensus 929 ~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 1003 (1389)
+|.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+...+.++++++.+++.+....... ..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLH-ES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhh-CC
Confidence 9987532 234567999999998887 5999999886543211 1223334568889999998542111111 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|.+
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~-~~~tvii~tH~~~-~~~~~~d~v~~l~~- 223 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK-ARYTIIIVTHNMQ-QAARVSDVTAFFYM- 223 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCeEEEEEecHH-HHHHhCCEEEEEEC-
Confidence 45799999999999999999999999999999999999999999999985 4799999999976 56788999999985
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|+++..|+.
T Consensus 224 G~i~~~g~~ 232 (253)
T PRK14242 224 GKLIEVGPT 232 (253)
T ss_pred CEEEEeCCH
Confidence 889888864
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=368.55 Aligned_cols=209 Identities=23% Similarity=0.365 Sum_probs=172.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 356 ~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 431 (582)
T PRK11176 356 VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDID---EGEILLDGHDLRDYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_pred CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCC---CceEEECCEEhhhcCHHHHHhhceEEccCceeec-c
Confidence 46999999999999999999999999999999999999997 8999999999887653 468999999999886 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++... +.+.++..+++...+. +..+ -.|++..||.+|+. +
T Consensus 432 Ti~~Ni~~~~~~------------------------~~~~~~i~~al~~~~l------~~~i--~~lp~Gldt~ig~~-g 478 (582)
T PRK11176 432 TIANNIAYARTE------------------------QYSREQIEEAARMAYA------MDFI--NKMDNGLDTVIGEN-G 478 (582)
T ss_pred hHHHHHhcCCCC------------------------CCCHHHHHHHHHHhCc------HHHH--HhcccccCceeCCC-C
Confidence 999999875210 0011122222221111 1122 23788899999973 5
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
+.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++.+ ++|+|+..|++ +..+.||+|++|++|
T Consensus 479 ~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~--~~tvI~VtHr~--~~~~~~D~Ii~l~~g 554 (582)
T PRK11176 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEKADEILVVEDG 554 (582)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998753 67888888776 677889999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++++.+
T Consensus 555 ~i~e~g~~~~l~~ 567 (582)
T PRK11176 555 EIVERGTHAELLA 567 (582)
T ss_pred EEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=347.48 Aligned_cols=214 Identities=27% Similarity=0.463 Sum_probs=180.4
Q ss_pred CCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000615 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1389)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1389)
.+..++.+|++|.++ +++++++|+|++++||+.+||+|+||||||||+++|+|..++ .+|+|.+||
T Consensus 317 ~~~ei~~~~l~~~y~------------~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~--~~G~I~vng 382 (559)
T COG4988 317 PPIEISLENLSFRYP------------DGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP--TQGEIRVNG 382 (559)
T ss_pred CCceeeecceEEecC------------CCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC--CCceEEECC
Confidence 455677778887654 223799999999999999999999999999999999998763 489999999
Q ss_pred ccC---ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccc------cccC
Q 000615 931 YPK---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS------MVGL 1001 (1389)
Q Consensus 931 ~~~---~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~------~~g~ 1001 (1389)
.+. +...+++.++||+|++.+++ -|++||+.++. .+.+ ++.+.++++..+|.+..+. .+|.
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~p~lf~-gTireNi~l~~-----~~~s----~e~i~~al~~a~l~~~v~~p~GLdt~ige 452 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQNPYLFA-GTIRENILLAR-----PDAS----DEEIIAALDQAGLLEFVPKPDGLDTVIGE 452 (559)
T ss_pred ccccccCHHHHHhHeeeeCCCCcccc-ccHHHHhhccC-----CcCC----HHHHHHHHHHhcHHHhhcCCCcccchhcc
Confidence 864 55778999999999998876 49999998753 1222 3347889999998776554 3443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+.++|||||+|||++||||+.+++++++||||++||.++++.|++.|.++++ ++||+++||++. ....+|+|++|+
T Consensus 453 -~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~-~ktvl~itHrl~--~~~~~D~I~vld 528 (559)
T COG4988 453 -GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK-QKTVLVITHRLE--DAADADRIVVLD 528 (559)
T ss_pred -CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh-CCeEEEEEcChH--HHhcCCEEEEec
Confidence 4568999999999999999999999999999999999999999999999986 599999999964 667899999998
Q ss_pred cCcEEEEecCCC
Q 000615 1082 RGGRVIYAGPLG 1093 (1389)
Q Consensus 1082 ~gG~~~~~g~~~ 1093 (1389)
+ |++++.|...
T Consensus 529 ~-G~l~~~g~~~ 539 (559)
T COG4988 529 N-GRLVEQGTHE 539 (559)
T ss_pred C-CceeccCCHH
Confidence 5 8999999753
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=333.39 Aligned_cols=217 Identities=24% Similarity=0.355 Sum_probs=174.7
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++.. ....+.+|+|||++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~--------~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i~ 72 (280)
T PRK13649 3 INLQNVSYTYQAG--------TPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP--TQGSVRVDDTLIT 72 (280)
T ss_pred EEEEEEEEEcCCC--------CccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEcc
Confidence 5677777655210 00013599999999999999999999999999999999997653 4799999998753
Q ss_pred h-------hhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000615 935 Q-------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1389)
Q Consensus 935 ~-------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 1004 (1389)
. ...++.++|++|++ .+++ .||+||+.+..... ....++..+.++++++.++|. ...+.. +
T Consensus 73 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (280)
T PRK13649 73 STSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKN-----P 143 (280)
T ss_pred ccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCC-----c
Confidence 2 23456799999996 3444 69999998764332 122334455678999999996 345554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.+|++++|.+ |
T Consensus 144 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G 221 (280)
T PRK13649 144 FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEK-G 221 (280)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEEC-C
Confidence 579999999999999999999999999999999999999999999999877999999999976 56678999999985 8
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 222 ~i~~~g~~ 229 (280)
T PRK13649 222 KLVLSGKP 229 (280)
T ss_pred EEEEeCCH
Confidence 89888875
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=374.75 Aligned_cols=206 Identities=25% Similarity=0.376 Sum_probs=168.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++|+|||.++|+||||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 494 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-g 569 (711)
T TIGR00958 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPT---GGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFS-G 569 (711)
T ss_pred CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHhhceEEecCccccc-c
Confidence 46999999999999999999999999999999999999997 9999999999887654 478999999999886 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++... .+.++..+++...+. +..++ .|++..||.+|+ .+
T Consensus 570 TIreNI~~g~~~-------------------------~~~e~i~~al~~a~l------~~~i~--~lp~GldT~ige-~G 615 (711)
T TIGR00958 570 SVRENIAYGLTD-------------------------TPDEEIMAAAKAANA------HDFIM--EFPNGYDTEVGE-KG 615 (711)
T ss_pred CHHHHHhcCCCC-------------------------CCHHHHHHHHHHcCC------HHHHH--hCCCccCCcccC-CC
Confidence 999999886321 011122222222211 11122 367889999996 35
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
..||||||||++||||++++|+|++||||||+||+.+...+.+ ... ..++|+|+..|++ ++.+.+|+|++|++|
T Consensus 616 ~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~~---~~~~TvIiItHrl--~~i~~aD~IivL~~G 689 (711)
T TIGR00958 616 SQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SRS---RASRTVLLIAHRL--STVERADQILVLKKG 689 (711)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hhc---cCCCeEEEEeccH--HHHHhCCEEEEEECC
Confidence 6799999999999999999999999999999999999998888 222 2467888888776 567889999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++|+++
T Consensus 690 ~ive~Gt~~eL~~ 702 (711)
T TIGR00958 690 SVVEMGTHKQLME 702 (711)
T ss_pred EEEEeeCHHHHHh
Confidence 9999999999875
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=328.93 Aligned_cols=218 Identities=21% Similarity=0.287 Sum_probs=177.2
Q ss_pred CCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEE
Q 000615 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIK 927 (1389)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~ 927 (1389)
....++++|+++.++ +..+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.
T Consensus 10 ~~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~ 76 (260)
T PRK10744 10 APSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEIL 76 (260)
T ss_pred CCceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEE
Confidence 344678889887552 2359999999999999999999999999999999999753 1 13579999
Q ss_pred EcCccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----ccccc
Q 000615 928 ISGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSM 998 (1389)
Q Consensus 928 i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 998 (1389)
++|.+... ..+++.++|++|++.+++ .||+||+.+...... ..+.++.+++++++++.+++.+ ..+..
T Consensus 77 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 153 (260)
T PRK10744 77 LDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS 153 (260)
T ss_pred ECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC
Confidence 99987531 235677999999988877 899999987653321 1233344456889999999843 23333
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEE
Q 000615 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1389)
Q Consensus 999 ~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1389)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++. ++.|||++||++. ++.+.+|+++
T Consensus 154 -----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~-~~~tiii~sH~~~-~~~~~~d~i~ 226 (260)
T PRK10744 154 -----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK-QDYTVVIVTHNMQ-QAARCSDYTA 226 (260)
T ss_pred -----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEE
Confidence 45799999999999999999999999999999999999999999999986 4789999999976 5667899999
Q ss_pred EEecCcEEEEecCC
Q 000615 1079 LLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1079 ~l~~gG~~~~~g~~ 1092 (1389)
+|.+ |+++..|+.
T Consensus 227 ~l~~-G~i~~~g~~ 239 (260)
T PRK10744 227 FMYL-GELIEFGNT 239 (260)
T ss_pred EEEC-CEEEEeCCH
Confidence 9985 899988874
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=337.82 Aligned_cols=209 Identities=21% Similarity=0.283 Sum_probs=173.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCC--
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD-- 254 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 254 (1389)
..++|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|+++..... ++.++||+|++
T Consensus 33 ~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~ 109 (331)
T PRK15079 33 TLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLA 109 (331)
T ss_pred ceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CcEEEECCEECCcCCHHHHHHHhCceEEEecCchh
Confidence 357999999999999999999999999999999999999886 9999999999865432 35799999997
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 333 (1389)
.+++.+||.||+.+..+....+ +.+.+ ....++.+++.+||. +..++
T Consensus 110 ~l~p~~tv~~~i~~~l~~~~~~--------~~~~~------------------------~~~~~~~~l~~vgl~~~~~~~ 157 (331)
T PRK15079 110 SLNPRMTIGEIIAEPLRTYHPK--------LSRQE------------------------VKDRVKAMMLKVGLLPNLINR 157 (331)
T ss_pred hcCCCCCHHHHHHHHHHHhccC--------CCHHH------------------------HHHHHHHHHHHcCCChHHhcC
Confidence 5788999999998754321100 00000 112346678899994 45677
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+.+ |||||||||+||+||+.+|++|++||||+|||..++.++.+.|+++.+..+.|++++.| ....+.+++|+
T Consensus 158 ~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTH-dl~~~~~~~dr 231 (331)
T PRK15079 158 YPHE-----FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAH-DLAVVKHISDR 231 (331)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeC-CHHHHHHhCCE
Confidence 7665 99999999999999999999999999999999999999999999997755667666554 55688889999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|++++.|+.+++.
T Consensus 232 i~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 232 VLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred EEEEECCEEEEEcCHHHHH
Confidence 9999999999999998875
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=322.47 Aligned_cols=213 Identities=25% Similarity=0.376 Sum_probs=173.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++.. .....+|+|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~~~---------~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~~ 74 (228)
T PRK10584 6 IVEVHHLKKSVGQG---------EHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG--SSGEVSLVGQPL 74 (228)
T ss_pred eEEEeeeEEEccCC---------CcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC--CCeeEEECCEEc
Confidence 46788887654310 0013599999999999999999999999999999999997653 479999999875
Q ss_pred Chh---h---h-hheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000615 934 NQE---T---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1389)
Q Consensus 934 ~~~---~---~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 1006 (1389)
... . . ++.++|++|++.+++.+|+.||+.+....+. ....+..+++.++++.+++.+..+..+ ..
T Consensus 75 ~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 146 (228)
T PRK10584 75 HQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLP-----AQ 146 (228)
T ss_pred ccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence 321 1 1 2569999999999999999999987654321 223344567899999999987776653 47
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||+++|+++ .+ +.+|++++|.+ |+
T Consensus 147 LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~-g~ 223 (228)
T PRK10584 147 LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLRLVN-GQ 223 (228)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC-CE
Confidence 9999999999999999999999999999999999999999999998754 899999999976 34 56999999985 77
Q ss_pred EEE
Q 000615 1086 VIY 1088 (1389)
Q Consensus 1086 ~~~ 1088 (1389)
+++
T Consensus 224 i~~ 226 (228)
T PRK10584 224 LQE 226 (228)
T ss_pred EEe
Confidence 764
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=297.52 Aligned_cols=201 Identities=27% Similarity=0.423 Sum_probs=177.3
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
..+|+|||++|.+||.+.++||||||||||||+++|..++ ..|.|.+||+++....- ..|.|+|++.++|.+||.|
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P--~~G~i~l~~r~i~gPga--ergvVFQ~~~LlPWl~~~d 93 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP--SRGSIQLNGRRIEGPGA--ERGVVFQNEALLPWLNVID 93 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc--ccceEEECCEeccCCCc--cceeEeccCccchhhHHHH
Confidence 4599999999999999999999999999999999998774 57999999998764332 2489999999999999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
|+.|+..++ .+++.++.+.+.+.+..+||.+..+..+ -.||||||||+.|||||..+|+.|+||||.+.||+
T Consensus 94 NvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa 165 (259)
T COG4525 94 NVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDA 165 (259)
T ss_pred HHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHHHHHHhhcCcceEeecCchhhHHH
Confidence 999998887 4667888899999999999999887764 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhCeEEEEec-CcEEEEecCCC
Q 000615 1040 RAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLG 1093 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~-gG~~~~~g~~~ 1093 (1389)
-+++.++++|-++. ++|+.++++||+.. |..-.++++++|+. .|+++..-|++
T Consensus 166 ~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgRvv~~~~~d 220 (259)
T COG4525 166 LTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGRVVERLPLD 220 (259)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCceeeEecCCC
Confidence 99999999998886 45999999999976 55557899999974 36788776653
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=326.65 Aligned_cols=205 Identities=20% Similarity=0.330 Sum_probs=171.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-----cCceEEEecCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLHHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~~~ 258 (1389)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++
T Consensus 14 ~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 14 TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEIT---SGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 46999999999999999999999999999999999999887 999999999876421 2457999999999998
Q ss_pred CCCHHHHHHHhhhc-cCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 259 EMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
.+||+||+.++... .+.. .. +....++.+++.+||++..|..+.+
T Consensus 91 ~~tv~~~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~ 136 (240)
T PRK09493 91 HLTALENVMFGPLRVRGAS----------KE------------------------EAEKQARELLAKVGLAERAHHYPSE 136 (240)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChHHHhcChhh
Confidence 99999999875321 1000 00 0012346688899998777877765
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++ .++|+|++.|++ .++.+++|++++|
T Consensus 137 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l 209 (240)
T PRK09493 137 -----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFI 209 (240)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 367777776655 4788899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (240)
T PRK09493 210 DKGRIAEDGDPQVLI 224 (240)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988764
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=326.18 Aligned_cols=219 Identities=21% Similarity=0.310 Sum_probs=173.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCC---CCceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK---TGGYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~---~~g~~~G~i~i~g 930 (1389)
.++++|+++.++ .+.+|+|||+++++||+++|+||||||||||+++|+|.. .+.+.+|+|.++|
T Consensus 3 ~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECC
Confidence 456777775442 246999999999999999999999999999999999952 2112479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.+... ...++.++|++|++.+++ .|+.||+.+....+.. ...+...+.++++++.+++.+....... ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 145 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLK-ESAF 145 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhh-CCcc
Confidence 87642 234567999999988877 5999999876543311 1122344568899999998642211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|.+ |+
T Consensus 146 ~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiiivtH~~~-~~~~~~d~v~~l~~-G~ 222 (250)
T PRK14245 146 ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK-KDYTIVIVTHNMQ-QAARVSDKTAFFYM-GE 222 (250)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhCCEEEEEEC-CE
Confidence 799999999999999999999999999999999999999999999985 5899999999986 57788999999984 89
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
+++.|+.
T Consensus 223 ~~~~~~~ 229 (250)
T PRK14245 223 MVEYDDT 229 (250)
T ss_pred EEEECCH
Confidence 9999875
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=367.36 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=172.1
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1389)
++|+|+|++++|||.++|+|+||||||||+++|+|+++|+ +|+|.+||+++++..+ ++.++||+|++.+|+. |
T Consensus 355 ~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~---~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-T 430 (592)
T PRK10790 355 LVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLT---EGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-T 430 (592)
T ss_pred ceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC---CceEEECCEEhhhCCHHHHHhheEEEccCCccccc-h
Confidence 5999999999999999999999999999999999999997 8999999999987654 5789999999999975 9
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
++|||.++.. . .++++ .+++...+ .+..++ .|++..||.+|+ .+.
T Consensus 431 i~~NI~~~~~---~--------------------~d~~i---~~a~~~~g------l~~~i~--~lp~Gldt~i~e-~g~ 475 (592)
T PRK10790 431 FLANVTLGRD---I--------------------SEEQV---WQALETVQ------LAELAR--SLPDGLYTPLGE-QGN 475 (592)
T ss_pred HHHHHHhCCC---C--------------------CHHHH---HHHHHHcC------cHHHHH--hccccccccccC-CCC
Confidence 9999988621 0 01111 11221111 111222 267889999997 456
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
.||||||||++|||||+++|+|++||||||+||+.++..|.+.|+++.. ++|+|+..|++ +....+|+|++|++|+
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii~l~~G~ 551 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTILVLHRGQ 551 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999998754 57888888876 6677899999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
++..|+++++++
T Consensus 552 i~~~G~~~~L~~ 563 (592)
T PRK10790 552 AVEQGTHQQLLA 563 (592)
T ss_pred EEEEcCHHHHHh
Confidence 999999999864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=329.96 Aligned_cols=223 Identities=22% Similarity=0.312 Sum_probs=177.2
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++.....+ ..+++.+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 3 l~~~~l~~~~~~~~~~~----~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 76 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFG----AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK--PAQGTVSFRGQDLY 76 (265)
T ss_pred EEEEeEEEEeccCcccc----ccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEcc
Confidence 56777776553110000 0113569999999999999999999999999999999999765 34799999998754
Q ss_pred hh------hhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000615 935 QE------TFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1389)
Q Consensus 935 ~~------~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 1005 (1389)
.. ..++.++|++|++ .+.+.+||+|++.+...... ........+.+.++++.+++. ...+.. +.
T Consensus 77 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 149 (265)
T TIGR02769 77 QLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADKL-----PR 149 (265)
T ss_pred ccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhCC-----hh
Confidence 21 2356799999997 46678999999976543211 122233445688999999995 556655 35
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|++. .+.+.+|++++|. +|
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~-~G 227 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMD-KG 227 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEe-CC
Confidence 79999999999999999999999999999999999999999999999765 899999999976 5667899999998 58
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 228 ~i~~~g~~ 235 (265)
T TIGR02769 228 QIVEECDV 235 (265)
T ss_pred EEEEECCH
Confidence 99998875
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=325.33 Aligned_cols=198 Identities=25% Similarity=0.364 Sum_probs=166.3
Q ss_pred eecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHHHHH
Q 000615 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL 962 (1389)
Q Consensus 883 L~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~ 962 (1389)
|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..... ...+|++|++.+++.+||.||+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~--~~~~~v~q~~~l~~~~tv~e~l~ 76 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ--PTSGGVILEGKQITEPG--PDRMVVFQNYSLLPWLTVRENIA 76 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCC--hhheEEecCcccCCCCCHHHHHH
Confidence 579999999999999999999999999999999765 34799999998764321 12489999999999999999998
Q ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHH
Q 000615 963 YSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1389)
Q Consensus 963 f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~ 1042 (1389)
+....... ....++..+.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+.++
T Consensus 77 ~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~ 150 (230)
T TIGR01184 77 LAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTR 150 (230)
T ss_pred HHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHH
Confidence 75321111 2233444556889999999987777653 47999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1043 AIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1043 ~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|+.
T Consensus 151 ~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-G~i~~~~~~ 199 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTN-GPAANIGQI 199 (230)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC-CcEecccCc
Confidence 9999999998764 899999999986 57788999999985 888887764
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=316.57 Aligned_cols=196 Identities=33% Similarity=0.607 Sum_probs=162.2
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1389)
.++|+|++|.++.+ .+++.+|+|+|+++++||++||+||||||||||+++|+|...+. +.+|+|.++|.+
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 57899999987532 13457999999999999999999999999999999999975522 458999999987
Q ss_pred CCh--hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 933 KNQ--ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 933 ~~~--~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
... ...++.++|++|++.+++.+||+||+.+..... .+.. +..||+|
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 543 235667999999999999999999998754211 1222 3579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ +.|+|+++|+...++.+.+|++++|.+ |++++.
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~-G~i~~~ 201 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE-GRQIYY 201 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC-CEEEec
Confidence 999999999999999999999999999999999999999999765 677777766543367788999999985 788765
Q ss_pred c
Q 000615 1090 G 1090 (1389)
Q Consensus 1090 g 1090 (1389)
|
T Consensus 202 g 202 (202)
T cd03233 202 G 202 (202)
T ss_pred C
Confidence 4
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=336.84 Aligned_cols=226 Identities=23% Similarity=0.258 Sum_probs=181.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+...... . ...+...+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 5 ~l~v~nl~~~~~~~~~~--~-~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p--~~G~i~~~g~~l 79 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGL--F-KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP--TGGELYYQGQDL 79 (327)
T ss_pred eEEEeeeEEEEcCCCCc--c-ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC--CCcEEEECCEEc
Confidence 46788888766421100 0 001235799999999999999999999999999999999997653 479999999875
Q ss_pred Ch------hhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCC
Q 000615 934 NQ------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGV 1004 (1389)
Q Consensus 934 ~~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~ 1004 (1389)
.. ..+++.++||+|++ .+.|.+||.+++.+..... .....++..+++.++++.++|.+ ..+.. +
T Consensus 80 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p 152 (327)
T PRK11308 80 LKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----P 152 (327)
T ss_pred CcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----C
Confidence 32 23456799999998 5889999999987654332 12334455677899999999963 44554 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
..||||||||++||+||+.+|+||++||||+|||..++..|+++|+++.++ |.|||++||+++ .+.+.+|++++|. .
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~-~ 230 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMY-L 230 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEE-C
Confidence 589999999999999999999999999999999999999999999999764 999999999976 4667899999998 4
Q ss_pred cEEEEecCCC
Q 000615 1084 GRVIYAGPLG 1093 (1389)
Q Consensus 1084 G~~~~~g~~~ 1093 (1389)
|++++.|+..
T Consensus 231 G~ive~g~~~ 240 (327)
T PRK11308 231 GRCVEKGTKE 240 (327)
T ss_pred CEEEEECCHH
Confidence 8999999853
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=331.28 Aligned_cols=214 Identities=26% Similarity=0.350 Sum_probs=176.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+. +++.+|+|||++|++||++||+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP------------DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK--PTSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEECc
Confidence 45677766542 12359999999999999999999999999999999999765 34799999998753
Q ss_pred h-----hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000615 935 Q-----ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 935 ~-----~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 1008 (1389)
. ...++.++|++|++. .+...||.||+.+..... ....++..+.+.++++.++|.+..++.+ ..||
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LS 139 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP-----HHLS 139 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh-----hhCC
Confidence 1 234567999999973 334579999998754321 1233444566889999999988877764 4799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++.++|.|||+++|+++ ++.+.||++++|++ |++++
T Consensus 140 ~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~-G~i~~ 217 (275)
T PRK13639 140 GGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSD-GKIIK 217 (275)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 56778999999985 89999
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 218 ~g~~ 221 (275)
T PRK13639 218 EGTP 221 (275)
T ss_pred eCCH
Confidence 8875
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=319.34 Aligned_cols=222 Identities=25% Similarity=0.344 Sum_probs=194.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1389)
..--++|+|++|+.||+..|||-||||||||+++|.++.+|+ +|+|.++|.++..... ++.+++|+|+..
T Consensus 40 ~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept---~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa 116 (386)
T COG4175 40 LVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPT---RGEILVDGKDIAKLSAAELRELRRKKISMVFQSFA 116 (386)
T ss_pred cEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCC---CceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc
Confidence 345689999999999999999999999999999999999997 9999999999876653 367999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
++|+.||.||..|+.+.+|.+.. | .+.+..+.|+..||+...+..+
T Consensus 117 LlPhrtVl~Nv~fGLev~Gv~~~----------e------------------------r~~~a~~~l~~VgL~~~~~~yp 162 (386)
T COG4175 117 LLPHRTVLENVAFGLEVQGVPKA----------E------------------------REERALEALELVGLEGYADKYP 162 (386)
T ss_pred cccchhHhhhhhcceeecCCCHH----------H------------------------HHHHHHHHHHHcCchhhhhcCc
Confidence 99999999999999999887521 1 1223567899999999999998
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
.+ ||||+||||.+||||+.+|+||+||||+|+|||--+.++.+.|.++.+.+++|+|+ +.|...|.+++.|+|.
T Consensus 163 ~e-----LSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvF-itHDLdEAlriG~rIa 236 (386)
T COG4175 163 NE-----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVF-ITHDLDEALRIGDRIA 236 (386)
T ss_pred cc-----ccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEE-EecCHHHHHhccceEE
Confidence 77 99999999999999999999999999999999999999999999998877777665 4567889999999999
Q ss_pred EEcCCeEEEecChhHHHHHHHhcCCCCCCCCChHHHHHhh
Q 000615 416 LLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEV 455 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~~~F~~lG~~~p~~~~~adfl~~v 455 (1389)
+|.+|+||..|+++|++. .|.+.-+++|..++
T Consensus 237 imkdG~ivQ~Gtp~eIl~--------~PAndYV~~Fv~~v 268 (386)
T COG4175 237 IMKDGEIVQVGTPEEILL--------NPANDYVRDFVRNV 268 (386)
T ss_pred EecCCeEEEeCCHHHHHc--------CccHHHHHHHHhcC
Confidence 999999999999999974 35555566666654
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=329.54 Aligned_cols=205 Identities=31% Similarity=0.415 Sum_probs=170.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhhheeeEeccCCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
+.+|+|+|+++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR--PDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPLT 91 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC--CCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCCC
Confidence 469999999999999999999999999999999999765 347999999987532 234556999999988788899
Q ss_pred HHHHHHHHHH-hhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCC
Q 000615 957 VYESLLYSAW-LRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1389)
Q Consensus 957 v~E~l~f~~~-lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTs 1035 (1389)
|.||+.+... .+........+..+.+.++++.+++.+..+..+ ..||||||||++||++|+.+|++++|||||+
T Consensus 92 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~ 166 (256)
T TIGR03873 92 VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM-----STLSGGERQRVHVARALAQEPKLLLLDEPTN 166 (256)
T ss_pred HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCccc
Confidence 9999987531 110000111233456889999999987777763 4799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1036 GLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1036 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
|||+.+...+.+.|+++.++|.|||+++|+++ ++.+.+|++++|.+ |+++..|+..
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 222 (256)
T TIGR03873 167 HLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDG-GRVVAAGPPR 222 (256)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeC-CCEEEecCHH
Confidence 99999999999999999877899999999987 57788999999985 7899888753
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=375.77 Aligned_cols=208 Identities=28% Similarity=0.380 Sum_probs=172.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++|+||+.++|+||||||||||+++|+|.++|+ +|+|++||+++++... ++.++||+|++.+|+ .
T Consensus 487 ~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~---~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-g 562 (708)
T TIGR01193 487 SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR---SGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFS-G 562 (708)
T ss_pred CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCC---CcEEEECCEEHHHcCHHHHHHheEEEecCceehh-H
Confidence 35899999999999999999999999999999999999997 9999999999877654 578999999999886 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+|||.++.+. +.+.++..+++..++. +.. .-.|++.+||.+|+ .+
T Consensus 563 TI~eNi~l~~~~------------------------~~~~~~i~~a~~~a~l------~~~--i~~lp~gldt~i~e-~G 609 (708)
T TIGR01193 563 SILENLLLGAKE------------------------NVSQDEIWAACEIAEI------KDD--IENMPLGYQTELSE-EG 609 (708)
T ss_pred HHHHHHhccCCC------------------------CCCHHHHHHHHHHhCC------HHH--HHhcccccCcEecC-CC
Confidence 999999885211 1111222233322221 111 12478889999986 46
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
..||||||||++||||++++|++|+||||||+||+.++..+.+.|+++ .++|+|+..|.+ ++.+.+|+|++|++|
T Consensus 610 ~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i~~l~~G 684 (708)
T TIGR01193 610 SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKIIVLDHG 684 (708)
T ss_pred CCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEEEEEECC
Confidence 779999999999999999999999999999999999999999999874 367888887776 567899999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
++++.|+++++++
T Consensus 685 ~i~~~G~~~~L~~ 697 (708)
T TIGR01193 685 KIIEQGSHDELLD 697 (708)
T ss_pred EEEEECCHHHHHh
Confidence 9999999999865
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=324.42 Aligned_cols=201 Identities=31% Similarity=0.444 Sum_probs=168.5
Q ss_pred ccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEec-cCCCCCCC
Q 000615 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCE-QNDIHSPY 954 (1389)
Q Consensus 878 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~-Q~~~~~~~ 954 (1389)
+.+.+|+|+|++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++ |++.+++.
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ--PTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 45679999999999999999999999999999999999765 347999999976422 23456799997 55677788
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+||+|++.+...++ ....++..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865433 1223344456788999999988777764 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~-G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDK-GRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEecC
Confidence 999999999999999998764 899999999986 56788999999985 7887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=315.15 Aligned_cols=183 Identities=45% Similarity=0.745 Sum_probs=156.6
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGE 259 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~ 259 (1389)
.++.+|+|+|+++++|++++|+||||||||||+++|+|.+++....+|+|.++|+++.... .++.++|++|++.+++.
T Consensus 18 ~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 97 (202)
T cd03233 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPT 97 (202)
T ss_pred CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCC
Confidence 3457999999999999999999999999999999999999831123999999999876542 34679999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++.+.. .++.+.
T Consensus 98 ~tv~~~l~~~~~~~---------------------------------------------------------~~~~~~--- 117 (202)
T cd03233 98 LTVRETLDFALRCK---------------------------------------------------------GNEFVR--- 117 (202)
T ss_pred CcHHHHHhhhhhhc---------------------------------------------------------cccchh---
Confidence 99999997742100 223333
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
.||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.||+..++.+.+|++++|++
T Consensus 118 --~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~ 195 (202)
T cd03233 118 --GISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYE 195 (202)
T ss_pred --hCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEEC
Confidence 499999999999999999999999999999999999999999999987654677888888887889999999999999
Q ss_pred CeEEEec
Q 000615 420 GQIVYQG 426 (1389)
Q Consensus 420 G~iv~~G 426 (1389)
|++++.|
T Consensus 196 G~i~~~g 202 (202)
T cd03233 196 GRQIYYG 202 (202)
T ss_pred CEEEecC
Confidence 9998765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=335.95 Aligned_cols=220 Identities=19% Similarity=0.266 Sum_probs=178.1
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC-Cc-eEEEEEEEcCcc
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GG-YIEGDIKISGYP 932 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~g-~~~G~i~i~g~~ 932 (1389)
++++|++..++.. .+...+|+||||+|++||++||+|+||||||||+++|+|... ++ ..+|+|.++|.+
T Consensus 4 L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~ 74 (326)
T PRK11022 4 LNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQD 74 (326)
T ss_pred EEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEE
Confidence 5778877655321 112469999999999999999999999999999999999754 22 357999999987
Q ss_pred CCh---hhhh----heeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc---cccccc
Q 000615 933 KNQ---ETFA----RVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL---NDSMVG 1000 (1389)
Q Consensus 933 ~~~---~~~~----~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~---~~~~~g 1000 (1389)
+.. ...+ +.++|++|++ .+.|.+|+.+++........ ....++.++++.++++.++|.+. .+..
T Consensus 75 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~-- 150 (326)
T PRK11022 75 LQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY-- 150 (326)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC--
Confidence 542 2222 3699999998 47889999998876543321 22345556778999999999753 2333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEE
Q 000615 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLL 1079 (1389)
Q Consensus 1001 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1389)
+..|||||||||+||+||+.+|+||++||||+|||+.++..+++.|+++.+ .|.|||++||+++ .+.+.+|++++
T Consensus 151 ---p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~v 226 (326)
T PRK11022 151 ---PHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIV 226 (326)
T ss_pred ---chhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence 458999999999999999999999999999999999999999999999976 4899999999976 46678999999
Q ss_pred EecCcEEEEecCC
Q 000615 1080 LKRGGRVIYAGPL 1092 (1389)
Q Consensus 1080 l~~gG~~~~~g~~ 1092 (1389)
|. +|++++.|+.
T Consensus 227 m~-~G~ive~g~~ 238 (326)
T PRK11022 227 MY-AGQVVETGKA 238 (326)
T ss_pred EE-CCEEEEECCH
Confidence 98 5899999985
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=319.30 Aligned_cols=189 Identities=24% Similarity=0.359 Sum_probs=161.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---h----hhhhheeeEeccCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---Q----ETFARVSGYCEQNDIHS 952 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~----~~~~~~~gyv~Q~~~~~ 952 (1389)
+.+|+|||+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. . ...++.++|++|++.++
T Consensus 11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (206)
T TIGR03608 11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK--FDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALI 88 (206)
T ss_pred EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhc
Confidence 469999999999999999999999999999999999765 34799999998742 1 12456799999999999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeC
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1032 (1389)
+.+|++||+.+....+ .....+..+.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||
T Consensus 89 ~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDE 160 (206)
T TIGR03608 89 ENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADE 160 (206)
T ss_pred cCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 9999999999865432 2223444567889999999987777763 4799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1033 PTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
||+|||+.++..+.+.|+++.++|.|||+++|++. ..+.+|++++|
T Consensus 161 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~--~~~~~d~i~~l 206 (206)
T TIGR03608 161 PTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206 (206)
T ss_pred CcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHhhcCEEEeC
Confidence 99999999999999999998877999999999975 45679998764
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=322.79 Aligned_cols=201 Identities=27% Similarity=0.401 Sum_probs=171.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhhheeeEeccCCCCCCCCCHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
+.+|+|+|++++|||+++|+|+||||||||+++|+|...+ ..|+|.++|.+.... ..++.++|++|++..++.+|+.
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~--~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP--TSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4699999999999999999999999999999999997653 479999999876431 2346799999999998899999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+....+. .......+.++++++.+++.+..+.. +..||+|||||++||++|+.+|++++|||||+|||
T Consensus 91 ~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD 162 (232)
T cd03300 91 ENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRK-----PSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162 (232)
T ss_pred HHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 22333445688999999998877766 35799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+.++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 163 ~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~-G~~~~~~~~ 215 (232)
T cd03300 163 LKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNK-GKIQQIGTP 215 (232)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEEC-CEEEecCCH
Confidence 99999999999998764 899999999976 57788999999985 889888763
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=334.21 Aligned_cols=207 Identities=29% Similarity=0.365 Sum_probs=172.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCC--C---CcCceEEEecCCCC-CC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE--F---VPQRTCAYISQHDL-HH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~-~~ 257 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.. . ..++.++|++|++. .+
T Consensus 19 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~---~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~ 95 (283)
T PRK13636 19 THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPS---SGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL 95 (283)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh
Confidence 35999999999999999999999999999999999999887 9999999998742 1 12357999999973 34
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
...||+||+.++....+.. ..+ ....++.+++.+||.+..|+.+++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~gL~~~~~~~~~~ 141 (283)
T PRK13636 96 FSASVYQDVSFGAVNLKLP----------EDE------------------------VRKRVDNALKRTGIEHLKDKPTHC 141 (283)
T ss_pred ccccHHHHHHhHHHHcCCC----------HHH------------------------HHHHHHHHHHHCCChhhhhCCccc
Confidence 4679999998854321110 000 012356788999999888888776
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|+. .++.++||++++|
T Consensus 142 -----LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l 215 (283)
T PRK13636 142 -----LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVM 215 (283)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999875567777776654 4677899999999
Q ss_pred cCCeEEEecChhHHHH
Q 000615 418 SEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~~ 433 (1389)
++|++++.|+.+++..
T Consensus 216 ~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 216 KEGRVILQGNPKEVFA 231 (283)
T ss_pred ECCEEEEeCCHHHHhc
Confidence 9999999999988754
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=323.12 Aligned_cols=202 Identities=24% Similarity=0.320 Sum_probs=167.9
Q ss_pred ccceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEec-CCCCCCC
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYIS-QHDLHHG 258 (1389)
Q Consensus 182 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~-Q~d~~~~ 258 (1389)
..+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|++..... .++.++|++ |++.+++
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT---SGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 4467999999999999999999999999999999999999887 999999998754321 245799997 5567778
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
.+||+||+.+.....+.. .. + ....++.+++.+||++..|+.+++
T Consensus 109 ~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~~~~~- 153 (236)
T cd03267 109 DLPVIDSFYLLAAIYDLP----------PA----------R--------------FKKRLDELSELLDLEELLDTPVRQ- 153 (236)
T ss_pred CCcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhHhcCChhh-
Confidence 899999998754322110 00 0 011245678889999988998876
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|+
T Consensus 154 ----LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~ 228 (236)
T cd03267 154 ----LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVID 228 (236)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998765567877777665 47788999999999
Q ss_pred CCeEEEec
Q 000615 419 EGQIVYQG 426 (1389)
Q Consensus 419 ~G~iv~~G 426 (1389)
+|++++.|
T Consensus 229 ~G~i~~~g 236 (236)
T cd03267 229 KGRLLYDG 236 (236)
T ss_pred CCEEEecC
Confidence 99998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=363.11 Aligned_cols=209 Identities=28% Similarity=0.356 Sum_probs=176.9
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|++|.++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 450 ~~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 516 (686)
T TIGR03797 450 GAIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP--ESGSVFYDGQD 516 (686)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEE
Confidence 36899999988741 124699999999999999999999999999999999998663 48999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 1002 (1389)
+. ...+++.+|||+|++.+++ -|++||+.++. + .+ ++.++++++..++.+.. |+.+|..
T Consensus 517 i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~----~e~i~~al~~a~l~~~i~~lp~G~dt~ige~ 585 (686)
T TIGR03797 517 LAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LT----LDEAWEAARMAGLAEDIRAMPMGMHTVISEG 585 (686)
T ss_pred cCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 4668889999999999876 49999998752 1 22 23477888888887543 5556643
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ ++|+|+++|+++ ..+.+|++++|++
T Consensus 586 -G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~Iivl~~ 659 (686)
T TIGR03797 586 -GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADRIYVLDA 659 (686)
T ss_pred -CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999886 589999999975 5678999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 660 -G~iv~~G~~ 668 (686)
T TIGR03797 660 -GRVVQQGTY 668 (686)
T ss_pred -CEEEEECCH
Confidence 899999984
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-35 Score=322.84 Aligned_cols=198 Identities=31% Similarity=0.452 Sum_probs=167.2
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCCH
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV 262 (1389)
++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+||
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD---AGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTA 95 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCH
Confidence 6999999999999999999999999999999999999887 999999999876421 24679999999999998999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+.....+.. .. +....++.+++.+||++..++.+++
T Consensus 96 ~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 136 (218)
T cd03266 96 RENLEYFAGLYGLK----------GD------------------------ELTARLEELADRLGMEELLDRRVGG----- 136 (218)
T ss_pred HHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHHhhhhhh-----
Confidence 99998753321110 00 0112356788999999888888776
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.+++|++++|++|++
T Consensus 137 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~i 214 (218)
T cd03266 137 FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGRV 214 (218)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999865 367777777665 578889999999999999
Q ss_pred EEec
Q 000615 423 VYQG 426 (1389)
Q Consensus 423 v~~G 426 (1389)
++.|
T Consensus 215 ~~~~ 218 (218)
T cd03266 215 VYEG 218 (218)
T ss_pred eecC
Confidence 8764
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=363.89 Aligned_cols=207 Identities=26% Similarity=0.428 Sum_probs=170.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 428 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQ---QGEILLNGQPIADYSEAALRQAISVVSQRVHLFS-A 428 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEhhhCCHHHHHhheeEEcccchhhc-c
Confidence 35899999999999999999999999999999999999997 9999999999887654 467999999998886 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++||+.++.. +.+.++..+++...+. +..+ -. ++++||.+|+. +
T Consensus 429 ti~~Ni~~~~~-------------------------~~~~~~i~~al~~~~l------~~~i--~~-p~GldT~vge~-g 473 (574)
T PRK11160 429 TLRDNLLLAAP-------------------------NASDEALIEVLQQVGL------EKLL--ED-DKGLNAWLGEG-G 473 (574)
T ss_pred cHHHHhhcCCC-------------------------ccCHHHHHHHHHHcCC------HHHH--cC-ccccCchhcCC-C
Confidence 99999988531 0011111222221111 1111 23 67889999973 5
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
+.||||||||++||||++++|++|+|||||++||+.++..+.+.|+++.+ ++|+|++.|++ +....+|+|++|++|
T Consensus 474 ~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~--~~tviiitHr~--~~~~~~d~i~~l~~G 549 (574)
T PRK11160 474 RQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ--NKTVLMITHRL--TGLEQFDRICVMDNG 549 (574)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEecCh--hHHHhCCEEEEEeCC
Confidence 66999999999999999999999999999999999999999999998753 68888888876 455779999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
++++.|+++|+++
T Consensus 550 ~i~~~g~~~~l~~ 562 (574)
T PRK11160 550 QIIEQGTHQELLA 562 (574)
T ss_pred eEEEeCCHHHHHh
Confidence 9999999999864
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-35 Score=340.11 Aligned_cols=209 Identities=25% Similarity=0.396 Sum_probs=171.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 259 (1389)
+.++|+|+|+++++||.+||+|++|||||||++.|+|-++|+ +|+|+.||.++..... ++.+++++|...+|.
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~---~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~- 425 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ---QGSITLNGVEIASLDEQALRETISVLTQRVHLFS- 425 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCC---CCeeeECCcChhhCChhhHHHHHhhhccchHHHH-
Confidence 347999999999999999999999999999999999999998 9999999999877655 468999999877775
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
.|+|+||.++. |+...++..++....+- +.. ..+.++..||.+|+ .
T Consensus 426 ~Tlr~NL~lA~-------------------------~~AsDEel~~aL~qvgL------~~l--~~~~p~gl~t~lge-~ 471 (573)
T COG4987 426 GTLRDNLRLAN-------------------------PDASDEELWAALQQVGL------EKL--LESAPDGLNTWLGE-G 471 (573)
T ss_pred HHHHHHHhhcC-------------------------CCCCHHHHHHHHHHcCH------HHH--HHhChhhhhchhcc-C
Confidence 69999998863 22222222222221110 111 12345688999996 6
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
+++||||||||++|||+|++|+++++|||||.|||+.|..++++.|.+-++ ++|+++..|+-. -.+.||+|++|++
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~--~le~~drIivl~~ 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR--GLERMDRIIVLDN 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc--cHhhcCEEEEEEC
Confidence 788999999999999999999999999999999999999999999988654 789988887654 4578999999999
Q ss_pred CeEEEecChhHHHH
Q 000615 420 GQIVYQGPRDNVLE 433 (1389)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1389)
|+++++|++.+++.
T Consensus 548 Gkiie~G~~~~Ll~ 561 (573)
T COG4987 548 GKIIEEGTHAELLA 561 (573)
T ss_pred CeeeecCCHHhhhc
Confidence 99999999999874
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=313.66 Aligned_cols=190 Identities=59% Similarity=0.963 Sum_probs=159.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++.. ..++.+|+|+|+++++||+++|+||||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVK---------GGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCC---------CCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 36778887765311 012469999999999999999999999999999999999642223589999999876
Q ss_pred ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000615 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 1013 (1389)
. ...++.++|++|++.+++.+|++||+.+...++ .|||||||
T Consensus 74 ~-~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------------------------------~LSgGe~q 115 (192)
T cd03232 74 D-KNFQRSTGYVEQQDVHSPNLTVREALRFSALLR-------------------------------------GLSVEQRK 115 (192)
T ss_pred H-HHhhhceEEecccCccccCCcHHHHHHHHHHHh-------------------------------------cCCHHHhH
Confidence 5 445677999999999999999999998743110 49999999
Q ss_pred HHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1014 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
|++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||+++.++.+.+|++++|.++|++++.|
T Consensus 116 rv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 116 RLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999887799999999998644678899999998548888765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=330.48 Aligned_cols=215 Identities=26% Similarity=0.359 Sum_probs=178.1
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ .+++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 7 ~l~~~nl~~~~~-----------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYP-----------NSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP--QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcC-----------CCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEec
Confidence 478888876542 0124699999999999999999999999999999999997653 479999999876
Q ss_pred Ch---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.. ..+++.++|++|++. .++.+||+||+.+..... ....++....++++++.++|.+..++.+ ..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP-----QNLSG 145 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc-----ccCCH
Confidence 42 345677999999974 567789999998764322 1223344556899999999988777764 57999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||+++|+++ ++ ..+|++++|.+ |+++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~ 222 (271)
T PRK13632 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE-GKLIA 222 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998766 599999999986 34 57999999985 88988
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 223 ~g~~ 226 (271)
T PRK13632 223 QGKP 226 (271)
T ss_pred ecCH
Confidence 8875
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=321.86 Aligned_cols=195 Identities=25% Similarity=0.367 Sum_probs=163.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 90 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT---SGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLL 90 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHHHheEEEecCchhc
Confidence 46999999999999999999999999999999999999887 999999999876532 235799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.+.....+.. .. +....++.+++.+||++..++.+++
T Consensus 91 ~~~t~~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 91 PDRNVYENVAFALEVTGVP----------PR------------------------EIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9999999998864322110 00 0011346678889998888887766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|++++|
T Consensus 137 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tiiivtH~~-~~~~~~~d~i~~l 209 (214)
T cd03292 137 -----LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKA-GTTVVVATHAK-ELVDTTRHRVIAL 209 (214)
T ss_pred -----cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 67777776665 5777899999999
Q ss_pred cCCeE
Q 000615 418 SEGQI 422 (1389)
Q Consensus 418 ~~G~i 422 (1389)
++|++
T Consensus 210 ~~G~~ 214 (214)
T cd03292 210 ERGKL 214 (214)
T ss_pred eCCcC
Confidence 99974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=328.51 Aligned_cols=205 Identities=26% Similarity=0.332 Sum_probs=171.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (271)
T PRK13632 22 NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ---SGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIG 98 (271)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCc
Confidence 35899999999999999999999999999999999999887 899999999886432 2467999999974 5677
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++....+.. .. +....++.+++.+||++..++.+++
T Consensus 99 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 142 (271)
T PRK13632 99 ATVEDDIAFGLENKKVP----------PK------------------------KMKDIIDDLAKKVGMEDYLDKEPQN-- 142 (271)
T ss_pred ccHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCHHHhhCCccc--
Confidence 89999998753321100 00 0012356788899999888888866
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ ..+|++++|++
T Consensus 143 ---LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~-~~~d~v~~l~~ 217 (271)
T PRK13632 143 ---LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMD-EA-ILADKVIVFSE 217 (271)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechh-HH-hhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987644578888887764 45 47999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|++++.|+.+++.
T Consensus 218 G~i~~~g~~~~~~ 230 (271)
T PRK13632 218 GKLIAQGKPKEIL 230 (271)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=335.53 Aligned_cols=205 Identities=23% Similarity=0.357 Sum_probs=168.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC----------------------
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF---------------------- 241 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~---------------------- 241 (1389)
.++|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|+++|.+....
T Consensus 20 ~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (305)
T PRK13651 20 LKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD---TGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKK 96 (305)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEEeceecccccccccccccccccccccccccc
Confidence 35899999999999999999999999999999999999987 89999998764210
Q ss_pred -----CcCceEEEecCCC-CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchh
Q 000615 242 -----VPQRTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETS 315 (1389)
Q Consensus 242 -----~~~~~~~yv~Q~d-~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~ 315 (1389)
..++.+|||+|++ ..+...||+||+.|+....+.. +. + ..
T Consensus 97 ~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~----------~~----------~--------------~~ 142 (305)
T PRK13651 97 IKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVS----------KE----------E--------------AK 142 (305)
T ss_pred cchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCC----------HH----------H--------------HH
Confidence 1245799999985 3444679999999865432211 00 0 11
Q ss_pred hhHHHHHHHhCCc-ccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCC
Q 000615 316 LVTDYVLKILGLD-ICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394 (1389)
Q Consensus 316 ~~~~~vl~~lgL~-~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~ 394 (1389)
..++.+++.+||+ +..++.+.+ |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.
T Consensus 143 ~~~~~~l~~~gL~~~~~~~~~~~-----LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~ 216 (305)
T PRK13651 143 KRAAKYIELVGLDESYLQRSPFE-----LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGK 216 (305)
T ss_pred HHHHHHHHHcCCChhhhhCChhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCC
Confidence 2356788999996 667877766 999999999999999999999999999999999999999999999875 467
Q ss_pred eEEEEEecCcchHHhhcCeEEEEcCCeEEEecChhHHH
Q 000615 395 TMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 395 t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
|+|++.|+ ..++.+++|+|++|++|++++.|+++++.
T Consensus 217 tiiivtHd-~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 217 TIILVTHD-LDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred EEEEEeeC-HHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 77776654 45788999999999999999999998874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=328.02 Aligned_cols=216 Identities=23% Similarity=0.291 Sum_probs=175.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 578888887542 24699999999999999999999999999999999996542 12579999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc----ccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL----NDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~----~~~~~g~ 1001 (1389)
.+... ..+++.++|++|++.+++. ||.||+.+....+.. .....+..+.++++++.+++.+. .+..
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 160 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEP--- 160 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCC---
Confidence 87532 2346679999999888875 999999886543311 11223334568899999999642 2332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ .+.+.+|++++|.
T Consensus 161 --~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~ 236 (267)
T PRK14235 161 --GTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFH 236 (267)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 789999999976 5667899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |+++..|+.
T Consensus 237 ~-G~i~~~g~~ 246 (267)
T PRK14235 237 L-GNLVEVGDT 246 (267)
T ss_pred C-CEEEEeCCH
Confidence 4 899988874
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=319.36 Aligned_cols=198 Identities=24% Similarity=0.306 Sum_probs=166.9
Q ss_pred eeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCCCHHHH
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1389)
Q Consensus 882 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 960 (1389)
+++|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en 90 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP--ASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQN 90 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHH
Confidence 46799999999999999999999999999999997653 47999999987532 2345679999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHH
Q 000615 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1389)
Q Consensus 961 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~ 1040 (1389)
+.+...... .. ..+.++.++++++.+++.+..++. +..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 91 ~~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~ 162 (213)
T TIGR01277 91 IGLGLHPGL--KL-NAEQQEKVVDAAQQVGIADYLDRL-----PEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPL 162 (213)
T ss_pred HHhHhhccC--Cc-cHHHHHHHHHHHHHcCcHHHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 987542211 11 122345678899999998777776 3579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecC
Q 000615 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~ 1091 (1389)
++..+.+.|+++.++ |+|||+++|++. ++.+.+|++++|. +|+++..|.
T Consensus 163 ~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~-~g~i~~~~~ 212 (213)
T TIGR01277 163 LREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVS-QGKIKVVSD 212 (213)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEE-CCeEEEecC
Confidence 999999999998764 899999999976 5667899999997 589888774
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=336.11 Aligned_cols=225 Identities=20% Similarity=0.282 Sum_probs=180.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-eEEEEEEEcCcc
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIKISGYP 932 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~~~G~i~i~g~~ 932 (1389)
.++++|++..+... .+...+|+||||+|++||++||+|+||||||||+++|+|...+. ..+|+|.++|.+
T Consensus 12 ~L~i~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~ 82 (330)
T PRK09473 12 LLDVKDLRVTFSTP---------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGRE 82 (330)
T ss_pred eEEEeCeEEEEecC---------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEE
Confidence 47788887655321 12356999999999999999999999999999999999976431 237999999987
Q ss_pred CCh---hhh---h-heeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCC
Q 000615 933 KNQ---ETF---A-RVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003 (1389)
Q Consensus 933 ~~~---~~~---~-~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~ 1003 (1389)
+.. ..+ + +.++||+|++ .+.|.+|+.+++.+...... ....++..+++.++++.++|.+..+.. + ..
T Consensus 83 i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~~-~-~~ 158 (330)
T PRK09473 83 ILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKRM-K-MY 158 (330)
T ss_pred CCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHHh-c-CC
Confidence 642 222 2 4699999998 67899999999977654332 233445556789999999997533221 1 12
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
+..||||||||++||+||+.+|+||++||||+|||+.++..+++.|+++.++ |.|||++|||++ .+.+.+|++++|.
T Consensus 159 p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~- 236 (330)
T PRK09473 159 PHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY- 236 (330)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE-
Confidence 5689999999999999999999999999999999999999999999999765 899999999976 4667899999997
Q ss_pred CcEEEEecCCC
Q 000615 1083 GGRVIYAGPLG 1093 (1389)
Q Consensus 1083 gG~~~~~g~~~ 1093 (1389)
+|++++.|+..
T Consensus 237 ~G~ive~g~~~ 247 (330)
T PRK09473 237 AGRTMEYGNAR 247 (330)
T ss_pred CCEEEEECCHH
Confidence 58999999853
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=332.07 Aligned_cols=217 Identities=24% Similarity=0.309 Sum_probs=178.8
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCce-EEEEEEEcCcc
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP 932 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~-~~G~i~i~g~~ 932 (1389)
.++++|+++.++. ..+.+|+|||++|++||++||+||||||||||+++|+|...+.. ..|+|.++|.+
T Consensus 5 ~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~ 73 (282)
T PRK13640 5 IVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGIT 73 (282)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEE
Confidence 4678888765421 12359999999999999999999999999999999999754321 13899999987
Q ss_pred CCh---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCC
Q 000615 933 KNQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 933 ~~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LS 1008 (1389)
... ...++.+||++|++. .++..||.||+.|..... ....++.++.++++++.++|.+..+.. ++.||
T Consensus 74 ~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~-----~~~LS 145 (282)
T PRK13640 74 LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSE-----PANLS 145 (282)
T ss_pred CCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCC-----cccCC
Confidence 643 234567999999974 567899999998764322 233445556789999999998877766 45899
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ +.||++++|. +|+++
T Consensus 146 ~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~-~G~i~ 222 (282)
T PRK13640 146 GGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLD-DGKLL 222 (282)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999765 899999999976 34 6799999997 48999
Q ss_pred EecCC
Q 000615 1088 YAGPL 1092 (1389)
Q Consensus 1088 ~~g~~ 1092 (1389)
+.|+.
T Consensus 223 ~~g~~ 227 (282)
T PRK13640 223 AQGSP 227 (282)
T ss_pred EeCCH
Confidence 99875
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=324.95 Aligned_cols=199 Identities=28% Similarity=0.353 Sum_probs=165.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---h-hhhheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E-TFARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~-~~~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|+++++||++||+|+||||||||+++|+|... +.+|+|.++|.+... . ..++.++|++|++.+++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP--VKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL 90 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC
Confidence 469999999999999999999999999999999999765 347999999987532 1 1345799999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcC-CcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~-L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
|+.||+.+....+. .. ..+.++++++.++ +.+..+.. +..||||||||++||++|+.+|++|+|||||
T Consensus 91 tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 91 TVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRR-----GGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred cHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999987654321 11 1223567777776 45555554 4579999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|+++++.+ |++++.|+..
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~-g~i~~~~~~~ 217 (230)
T TIGR03410 160 EGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMER-GRVVASGAGD 217 (230)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999998864 899999999976 56668999999974 8999988864
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=329.50 Aligned_cols=207 Identities=27% Similarity=0.384 Sum_probs=169.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc------eEEEEEEEcCccCCh---hhhhheeeEeccCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG------YIEGDIKISGYPKNQ---ETFARVSGYCEQNDI 950 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g------~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~ 950 (1389)
+.+|+|||++|++||+++|+||||||||||+++|+|..++. ..+|+|.++|.+... ...++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999975431 127999999987532 334567899999987
Q ss_pred CCCCCCHHHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHh-------
Q 000615 951 HSPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELV------- 1022 (1389)
Q Consensus 951 ~~~~lTv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~------- 1022 (1389)
.++.+||+||+.+...... ......++..+.++++++.+++.+..+.. +..|||||||||+||++|+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSgG~~qrv~laral~~~~~~~~ 168 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRD-----VTTLSGGELARVQFARVLAQLWPPHD 168 (272)
T ss_pred CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCC-----cccCCHHHHHHHHHHHHHhccccccc
Confidence 6677999999987532111 00111123345688999999998776665 3579999999999999999
Q ss_pred --hCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1023 --ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1023 --~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
.+|++|+|||||+|||+.++..+.+.|+++.++ |+|||+++|+++ ++.+.+|++++|.+ |++++.|+..
T Consensus 169 ~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 240 (272)
T PRK13547 169 AAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHADRIAMLAD-GAIVAHGAPA 240 (272)
T ss_pred cCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CeEEEecCHH
Confidence 599999999999999999999999999998765 899999999986 56678999999985 8999988753
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=326.80 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=171.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-----------CcCceEEEecC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----------VPQRTCAYISQ 252 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----------~~~~~~~yv~Q 252 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPE---AGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 35999999999999999999999999999999999999886 89999999987532 12357999999
Q ss_pred CCCCCCCCCHHHHHHHhhhc-cCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccc
Q 000615 253 HDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (1389)
Q Consensus 253 ~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~ 331 (1389)
++.+++.+||+||+.++... .+.. . . .....++.+++.+||++..
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~gl~~~~ 138 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEP----------K----------E--------------EATARARELLAKVGLAGKE 138 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCC----------H----------H--------------HHHHHHHHHHHHcCCcchh
Confidence 99999899999999875321 1000 0 0 0012345678889998877
Q ss_pred cccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhc
Q 000615 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1389)
Q Consensus 332 dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 411 (1389)
|+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +.|+|++.|+ ..++.+++
T Consensus 139 ~~~~~~-----LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~tvi~~tH~-~~~~~~~~ 211 (250)
T PRK11264 139 TSYPRR-----LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQE-KRTMVIVTHE-MSFARDVA 211 (250)
T ss_pred hCChhh-----CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhc-CCEEEEEeCC-HHHHHHhc
Confidence 877766 9999999999999999999999999999999999999999999998753 6777776655 45788899
Q ss_pred CeEEEEcCCeEEEecChhHHH
Q 000615 412 DDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~ 432 (1389)
|+|++|++|++++.|+.+++.
T Consensus 212 d~i~~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 212 DRAIFMDQGRIVEQGPAKALF 232 (250)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=359.93 Aligned_cols=221 Identities=23% Similarity=0.309 Sum_probs=183.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|...+++.+|+|.++|.+.
T Consensus 5 ~l~~~nl~~~~-------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF-------------GGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe-------------CCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 36778887654 23469999999999999999999999999999999999765433589999999876
Q ss_pred Chh----hhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
... ..++.+|||+|++.+++.+||+||+.+....+.......++..+.++++++.+++.+..+..+ ..|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV-----GNLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch-----hhCCH
Confidence 421 124569999999999999999999988653321111123344456899999999987777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++||+++ ++.+.||++++|.+ |++++.
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~-G~i~~~ 224 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRD-GRHIGT 224 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEEC-CEEeee
Confidence 9999999999999999999999999999999999999999999878999999999976 56778999999985 899999
Q ss_pred cCCCc
Q 000615 1090 GPLGH 1094 (1389)
Q Consensus 1090 g~~~~ 1094 (1389)
|+..+
T Consensus 225 ~~~~~ 229 (506)
T PRK13549 225 RPAAG 229 (506)
T ss_pred ccccc
Confidence 88754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=327.04 Aligned_cols=224 Identities=21% Similarity=0.273 Sum_probs=179.5
Q ss_pred ccCCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEE
Q 000615 849 PFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGD 925 (1389)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~ 925 (1389)
|..+..++++|+++.++ .+.+|+|||+++++||++||+|+||||||||+++|+|...+ .+.+|+
T Consensus 15 ~~~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~ 81 (267)
T PRK14237 15 PEEEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQ 81 (267)
T ss_pred CCCCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceE
Confidence 33445688999887552 24699999999999999999999999999999999997542 135799
Q ss_pred EEEcCccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccccccccc
Q 000615 926 IKISGYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000 (1389)
Q Consensus 926 i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g 1000 (1389)
|.++|.+... ...++.++|++|++.+++ .||+||+.+..... . ....+..++.+.++++.++|.+..+....
T Consensus 82 i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 82 ILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA-G-VKDKKVLDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred EEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc-C-CCCHHHHHHHHHHHHHHcCCCchhhhhhc
Confidence 9999987632 234567999999988877 59999998864321 1 11233445668889999998542222222
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1001 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
. .+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++ ++.+.||++++|
T Consensus 159 ~-~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tiii~tH~~~-~~~~~~d~i~~l 235 (267)
T PRK14237 159 K-SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELK-KNYTIIIVTHNMQ-QAARASDYTAFF 235 (267)
T ss_pred C-CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh-cCCEEEEEecCHH-HHHHhcCEEEEE
Confidence 1 246899999999999999999999999999999999999999999999985 4799999999986 577889999999
Q ss_pred ecCcEEEEecCC
Q 000615 1081 KRGGRVIYAGPL 1092 (1389)
Q Consensus 1081 ~~gG~~~~~g~~ 1092 (1389)
. +|++++.|+.
T Consensus 236 ~-~G~i~~~g~~ 246 (267)
T PRK14237 236 Y-LGDLIEYDKT 246 (267)
T ss_pred E-CCEEEEeCCH
Confidence 8 5899999885
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=328.78 Aligned_cols=216 Identities=25% Similarity=0.308 Sum_probs=178.8
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++. ..+.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~--~~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK--VKSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEC
Confidence 4788888765421 12358999999999999999999999999999999999765 3479999999875
Q ss_pred Ch---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.. ...++.++|++|++. +++..|+.+|+.+..... ....++..+.++++++.+++.+..+.. +..|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYE-----PNALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC-----cccCCH
Confidence 32 345677999999985 677889999998864322 123344455688999999998877765 457999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++. .+|++++|.+ |++++
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~~l~~-G~i~~ 222 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVIVMNK-GTVYK 222 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999998764 899999999986 454 4999999985 89999
Q ss_pred ecCCC
Q 000615 1089 AGPLG 1093 (1389)
Q Consensus 1089 ~g~~~ 1093 (1389)
.|+..
T Consensus 223 ~g~~~ 227 (269)
T PRK13648 223 EGTPT 227 (269)
T ss_pred ecCHH
Confidence 88753
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=331.43 Aligned_cols=218 Identities=22% Similarity=0.291 Sum_probs=178.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++... ....+.+|+|||++|++||+++|+|+||||||||+++|+|... +.+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~i~g~~i~ 75 (280)
T PRK13633 5 IKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI--PSEGKVYVDGLDTS 75 (280)
T ss_pred EEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEecc
Confidence 67888877653100 0012469999999999999999999999999999999999765 34799999998764
Q ss_pred h----hhhhheeeEeccCCCC-CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 935 Q----ETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 935 ~----~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
. ...++.+||++|++.. +...||.|++.|..... .....+.++.++++++.++|.+..++.+ ..|||
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LS~ 147 (280)
T PRK13633 76 DEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-----HLLSG 147 (280)
T ss_pred ccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCH
Confidence 2 2346779999999742 33469999998875432 2233445567899999999988877764 57999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++ ..+|++++|++ |++++
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~-~~~d~v~~l~~-G~i~~ 224 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EA-VEADRIIVMDS-GKVVM 224 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HH-hcCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999764 999999999986 34 45999999985 89999
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 225 ~g~~ 228 (280)
T PRK13633 225 EGTP 228 (280)
T ss_pred ecCH
Confidence 8875
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=357.26 Aligned_cols=123 Identities=24% Similarity=0.318 Sum_probs=100.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-ccccccCCCCCCCCHHHHHHHHHHHHHhh---CCCCce
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDSMVGLPGVSGLSTEQRKRLTIAVELVA---NPSIIF 1029 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-~~~~~g~~~~~~LSgGqrqRl~ia~aL~~---~p~ill 1029 (1389)
.+||.|.+.|...+. .. ....++++.+||... .+.. ...||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~i------~~~l~~L~~~gL~~l~l~~~-----~~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---SI------SRKLQTLCDVGLGYIKLGQP-----ATTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---ch------hHHHHHHHHcCCCchhhcCc-----cccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 467888877765432 11 124678899999753 3444 45799999999999999997 599999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe-----cCcEEEEecCC
Q 000615 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPL 1092 (1389)
Q Consensus 1030 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-----~gG~~~~~g~~ 1092 (1389)
|||||+|||+.....+++.|+++.++|.|||+++|+++ ..+.+|+++.|. ++|++++.|+.
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~--~i~~aD~ii~Lgp~~G~~gG~iv~~G~~ 920 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD--VIKTADYIIDLGPEGGDGGGTIVASGTP 920 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH--HHHhCCEEEEecCCccCCCCEEEEeCCH
Confidence 99999999999999999999999888999999999975 446799999994 57999999875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=332.82 Aligned_cols=219 Identities=20% Similarity=0.310 Sum_probs=175.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++... .....+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~i 75 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS--ETGQTIVGDYAI 75 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEEc
Confidence 467888877653100 0013599999999999999999999999999999999997653 479999999865
Q ss_pred C--------hhhhhheeeEeccCCCC-CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCC
Q 000615 934 N--------QETFARVSGYCEQNDIH-SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPG 1003 (1389)
Q Consensus 934 ~--------~~~~~~~~gyv~Q~~~~-~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~ 1003 (1389)
. ....++.++|++|++.. ....||+||+.|..... ....++..+.++++++.++|. +..+..
T Consensus 76 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~----- 147 (289)
T PRK13645 76 PANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRS----- 147 (289)
T ss_pred cccccccccHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCC-----
Confidence 2 12345679999999742 22469999998864321 122334445678899999994 566655
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |+|||++||+++ ++.+.||++++|.+
T Consensus 148 ~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~ 226 (289)
T PRK13645 148 PFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHE 226 (289)
T ss_pred hhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC
Confidence 3579999999999999999999999999999999999999999999998764 899999999976 57788999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 227 -G~i~~~g~~ 235 (289)
T PRK13645 227 -GKVISIGSP 235 (289)
T ss_pred -CEEEEeCCH
Confidence 899988874
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=322.04 Aligned_cols=201 Identities=27% Similarity=0.352 Sum_probs=164.2
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCC--CC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--LH 256 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~~ 256 (1389)
++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++|++|++ .+
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPT---SGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL 95 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEccccchhhHHHhhccEEEEecCchhhc
Confidence 6999999999999999999999999999999999999887 999999999886543 245799999998 46
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMV 335 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~v 335 (1389)
++.+||+||+.+.....+... .+ + . .....+.+++.+||. +..++.+
T Consensus 96 ~~~~tv~~nl~~~~~~~~~~~----------~~---------~--~-----------~~~~~~~~l~~~~l~~~~~~~~~ 143 (228)
T cd03257 96 NPRMTIGEQIAEPLRIHGKLS----------KK---------E--A-----------RKEAVLLLLVGVGLPEEVLNRYP 143 (228)
T ss_pred CCcCCHHHHHHHHHHhccCCc----------HH---------H--H-----------HHHHHHHHHHHCCCChhHhhCCc
Confidence 678999999987543221100 00 0 0 001124567888985 5667777
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|+
T Consensus 144 ~~-----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~ 217 (228)
T cd03257 144 HE-----LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVA 217 (228)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 65 9999999999999999999999999999999999999999999998765467888777765 47778999999
Q ss_pred EEcCCeEEEec
Q 000615 416 LLSEGQIVYQG 426 (1389)
Q Consensus 416 lL~~G~iv~~G 426 (1389)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998765
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=324.77 Aligned_cols=206 Identities=22% Similarity=0.369 Sum_probs=172.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 16 ~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 16 RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRD---AGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 46999999999999999999999999999999999999887 8999999998765432 3579999999999998
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.+..+.... .... +....++.+++.+||++..++.+++
T Consensus 93 ~tv~enl~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-- 137 (241)
T PRK10895 93 LSVYDNLMAVLQIRDD---------LSAE------------------------QREDRANELMEEFHIEHLRDSMGQS-- 137 (241)
T ss_pred CcHHHHHhhhhhcccc---------cCHH------------------------HHHHHHHHHHHHcCCHHHhhcchhh--
Confidence 9999999875322110 0000 0112356678899998777777765
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.++++++ .+.|+|++.|++ .++.+++|++++|++
T Consensus 138 ---LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~ 212 (241)
T PRK10895 138 ---LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQ 212 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeC
Confidence 999999999999999999999999999999999999999999998875 467877777655 478899999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|++++.|+++++.
T Consensus 213 G~i~~~~~~~~~~ 225 (241)
T PRK10895 213 GHLIAHGTPTEIL 225 (241)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988764
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=320.60 Aligned_cols=194 Identities=28% Similarity=0.393 Sum_probs=163.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (214)
T TIGR02673 15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS---RGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLL 91 (214)
T ss_pred ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcccCCHHHHHHHHhheEEEecChhhc
Confidence 46999999999999999999999999999999999999887 999999999886542 235799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.++....+.. .. .....++.+++.+||++..++.+.+
T Consensus 92 ~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 137 (214)
T TIGR02673 92 PDRTVYENVALPLEVRGKK----------ER------------------------EIQRRVGAALRQVGLEHKADAFPEQ 137 (214)
T ss_pred cCCcHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChhh
Confidence 8999999998864322100 00 0012356688899998877887766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++.|++ .++.+++|++++|
T Consensus 138 -----LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l 210 (214)
T TIGR02673 138 -----LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIIL 210 (214)
T ss_pred -----CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEe
Confidence 999999999999999999999999999999999999999999999865 367777777665 5888899999999
Q ss_pred cCCe
Q 000615 418 SEGQ 421 (1389)
Q Consensus 418 ~~G~ 421 (1389)
++|+
T Consensus 211 ~~G~ 214 (214)
T TIGR02673 211 DDGR 214 (214)
T ss_pred cCCC
Confidence 9985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=325.45 Aligned_cols=204 Identities=22% Similarity=0.286 Sum_probs=170.7
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCC-CCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGEM 260 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~l 260 (1389)
.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. +++..
T Consensus 23 ~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 99 (269)
T PRK13648 23 FTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK---SGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS 99 (269)
T ss_pred cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccc
Confidence 5899999999999999999999999999999999999887 999999999876432 2457999999974 67788
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|+++|+.|.....+.. .. + ....++.+++.+||.+..|+.+++
T Consensus 100 ~v~~~~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 142 (269)
T PRK13648 100 IVKYDVAFGLENHAVP----------YD----------E--------------MHRRVSEALKQVDMLERADYEPNA--- 142 (269)
T ss_pred cHHHHHHhhHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCCchhhhCCccc---
Confidence 9999998864322110 00 0 011345678899998888877765
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++.. +|+|++|++|
T Consensus 143 --LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~~-~d~i~~l~~G 218 (269)
T PRK13648 143 --LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAME-ADHVIVMNKG 218 (269)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHhc-CCEEEEEECC
Confidence 99999999999999999999999999999999999999999999987645678888877764 5554 9999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (269)
T PRK13648 219 TVYKEGTPTEIF 230 (269)
T ss_pred EEEEecCHHHHh
Confidence 999999998874
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=322.37 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=168.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 13 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 13 SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK---SGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 46999999999999999999999999999999999999887 9999999998765432 3569999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhC-CcccccccccCc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG-LDICADTMVGDE 338 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lg-L~~~~dt~vg~~ 338 (1389)
+||+||+.++....+.. . ....+.+++.++ +++..++.+++
T Consensus 90 ~tv~~~l~~~~~~~~~~----------~---------------------------~~~~~~~l~~~~~l~~~~~~~~~~- 131 (230)
T TIGR03410 90 LTVEENLLTGLAALPRR----------S---------------------------RKIPDEIYELFPVLKEMLGRRGGD- 131 (230)
T ss_pred CcHHHHHHHHHHhcCcc----------h---------------------------HHHHHHHHHHHHhHHHHhhCChhh-
Confidence 99999998764321100 0 001244556665 55556677665
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++..+.|+|++.|++ .++.+++|+|++|+
T Consensus 132 ----LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~ 206 (230)
T TIGR03410 132 ----LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVME 206 (230)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999998764467777777665 47888999999999
Q ss_pred CCeEEEecChhHH
Q 000615 419 EGQIVYQGPRDNV 431 (1389)
Q Consensus 419 ~G~iv~~G~~~~~ 431 (1389)
+|++++.|+.+++
T Consensus 207 ~g~i~~~~~~~~~ 219 (230)
T TIGR03410 207 RGRVVASGAGDEL 219 (230)
T ss_pred CCEEEEECCHHHc
Confidence 9999999998876
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=331.09 Aligned_cols=205 Identities=25% Similarity=0.372 Sum_probs=171.9
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCC-CCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL-HHGEM 260 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 260 (1389)
.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++||+|++. .+...
T Consensus 18 ~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (277)
T PRK13652 18 EALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT---SGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP 94 (277)
T ss_pred ceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHhheEEEecCcccccccc
Confidence 5899999999999999999999999999999999999987 9999999998754322 356899999963 34468
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+||+.+.....+.. .. .....++..++.+||++..++.+++
T Consensus 95 tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (277)
T PRK13652 95 TVEQDIAFGPINLGLD----------EE------------------------TVAHRVSSALHMLGLEELRDRVPHH--- 137 (277)
T ss_pred cHHHHHHhHHHHcCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCccc---
Confidence 9999998754321110 00 0012356788999999888888866
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|++++.|++ .++.+.+|+|++|++|
T Consensus 138 --LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G 214 (277)
T PRK13652 138 --LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKG 214 (277)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998775567777777665 4788999999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
++++.|+++++.
T Consensus 215 ~i~~~g~~~~~~ 226 (277)
T PRK13652 215 RIVAYGTVEEIF 226 (277)
T ss_pred eEEEECCHHHHh
Confidence 999999998875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-34 Score=340.96 Aligned_cols=195 Identities=25% Similarity=0.413 Sum_probs=170.2
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-------CcCceEEEecCCCCCCCCCC
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1389)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... ..++.++||+|++.+++.+|
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 92 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQ---KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYK 92 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCc
Confidence 899999999999999999999999999999999887 99999999987531 12467999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.|+.+. . ....++.+++.+||++..++.+++
T Consensus 93 v~enl~~~~~~----------------~------------------------~~~~~~~~l~~~gl~~~~~~~~~~---- 128 (352)
T PRK11144 93 VRGNLRYGMAK----------------S------------------------MVAQFDKIVALLGIEPLLDRYPGS---- 128 (352)
T ss_pred HHHHHHhhhhh----------------h------------------------hHHHHHHHHHHcCCchhhhCCccc----
Confidence 99999875210 0 011246678899999888888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++..++|+|++|++|+
T Consensus 129 -LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~G~ 206 (352)
T PRK11144 129 -LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQGK 206 (352)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999875567777776654 58899999999999999
Q ss_pred EEEecChhHHH
Q 000615 422 IVYQGPRDNVL 432 (1389)
Q Consensus 422 iv~~G~~~~~~ 432 (1389)
++..|+++++.
T Consensus 207 i~~~g~~~~i~ 217 (352)
T PRK11144 207 VKAFGPLEEVW 217 (352)
T ss_pred EEEecCHHHHH
Confidence 99999999884
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-34 Score=332.26 Aligned_cols=214 Identities=21% Similarity=0.259 Sum_probs=172.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCC--
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHD-- 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d-- 254 (1389)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++....+|+|.++|.++..... ++.++||+|++
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 569999999999999999999999999999999999998742348999999999865432 14799999998
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~ 334 (1389)
.+.+.+||.+++.+....... ..+.+ ....+..+++.+||++..++
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~---------~~~~~------------------------~~~~~~~~L~~vgL~~~~~~- 154 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKG---------MSKAE------------------------AFEESVRMLDAVKMPEARKR- 154 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcC---------CCHHH------------------------HHHHHHHHHHHcCCCChHHH-
Confidence 688899999999764322110 00000 11235667888999754322
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+ +...+.|||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|++++.|+ ...+.+++|+|
T Consensus 155 ~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHd-l~~~~~~~Dri 232 (330)
T PRK09473 155 M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHD-LGVVAGICDKV 232 (330)
T ss_pred h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECC-HHHHHHhCCEE
Confidence 1 234456999999999999999999999999999999999999999999999987656777666655 45778899999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (1389)
++|++|++++.|+.+++.+
T Consensus 233 ~vm~~G~ive~g~~~~i~~ 251 (330)
T PRK09473 233 LVMYAGRTMEYGNARDVFY 251 (330)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998853
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=327.93 Aligned_cols=215 Identities=21% Similarity=0.269 Sum_probs=174.2
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 929 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~ 929 (1389)
..++++|+++.++ .+.+|+|+||+|++||+++|+||||||||||+++|+|.... .+.+|+|.++
T Consensus 12 ~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 12 IIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred ceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3578888886552 24699999999999999999999999999999999997431 1357999999
Q ss_pred CccCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000615 930 GYPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1389)
Q Consensus 930 g~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g 1000 (1389)
|.+.. ....++.++|++|++.+++. ||+||+.+....+. .. ...++.++++++.+++.. ..+..
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 151 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNES-- 151 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCC--
Confidence 98653 23455679999999988874 99999988764331 11 123345778888888742 23333
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1001 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
+..|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.||++++|
T Consensus 152 ---~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 226 (269)
T PRK14259 152 ---GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAFF 226 (269)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 678899999999
Q ss_pred ec----------CcEEEEecCC
Q 000615 1081 KR----------GGRVIYAGPL 1092 (1389)
Q Consensus 1081 ~~----------gG~~~~~g~~ 1092 (1389)
.+ .|++++.|+.
T Consensus 227 ~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 227 NAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred eccccccccccccceEEEeCCH
Confidence 85 3678888875
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=318.58 Aligned_cols=196 Identities=25% Similarity=0.388 Sum_probs=164.7
Q ss_pred ccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-------hhhhheeeEeccCCC
Q 000615 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDI 950 (1389)
Q Consensus 878 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~ 950 (1389)
+++.+ |||+++++ |+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.
T Consensus 11 ~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 85 (214)
T cd03297 11 PDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP--DGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA 85 (214)
T ss_pred CCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC--CCceEEECCEecccccchhhhhhHhhcEEEEecCCc
Confidence 34445 99999999 99999999999999999999997653 47999999986531 124567999999999
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 951 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
+++.+|+.||+.+..... .....++.+.++++.+++.+..+.. +..||||||||++||++|+.+|++|+|
T Consensus 86 ~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~llll 155 (214)
T cd03297 86 LFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRY-----PAQLSGGEKQRVALARALAAQPELLLL 155 (214)
T ss_pred cCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcC-----cccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999998764321 1223345688999999998766665 357999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..|
T Consensus 156 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 214 (214)
T cd03297 156 DEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMED-GRLQYIG 214 (214)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEEC-CEEEecC
Confidence 9999999999999999999999765 899999999976 56678999999985 7887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=325.13 Aligned_cols=215 Identities=22% Similarity=0.311 Sum_probs=174.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC-ceEEEEEEEcCccC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-GYIEGDIKISGYPK 933 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~-g~~~G~i~i~g~~~ 933 (1389)
++++|+++.++ .+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|.+.
T Consensus 3 ~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 3 AKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred eeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 45667766542 34699999999999999999999999999999999997431 23579999999876
Q ss_pred Ch---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccCCCCCC
Q 000615 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPGVSG 1006 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~~~~~~ 1006 (1389)
.. ...++.++|++|++.+++ .||+||+.+....+.... .....+++++++++.++|.+ ..+.. +..
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~~ 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQN-----ALA 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCccc-ChHHHHHHHHHHHHHcCCChhhhHHhcCC-----ccc
Confidence 42 345667999999998887 699999988654331111 12234456789999999953 22332 457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ |+|||++||+++ ++.+.+|++++|.+ |++
T Consensus 143 LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~-G~i 219 (246)
T PRK14269 143 LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHL-GEL 219 (246)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999864 899999999976 57788999999984 899
Q ss_pred EEecCC
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~g~~ 1092 (1389)
++.|+.
T Consensus 220 ~~~g~~ 225 (246)
T PRK14269 220 IEFGES 225 (246)
T ss_pred EEECCH
Confidence 998874
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=288.35 Aligned_cols=200 Identities=28% Similarity=0.431 Sum_probs=171.3
Q ss_pred ccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---h---hhh-heeeEeccC
Q 000615 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---E---TFA-RVSGYCEQN 948 (1389)
Q Consensus 876 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~---~~~-~~~gyv~Q~ 948 (1389)
......||++|++.|++||-+||+|||||||||||-+|+|...+ .+|+|.+.|++... + .+| +.+|+|+|.
T Consensus 19 ~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~--ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQS 96 (228)
T COG4181 19 GEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP--SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQS 96 (228)
T ss_pred CCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC--CCceEEEcCcchhhcCHHHHHHhhccceeEEEEe
Confidence 34567899999999999999999999999999999999998663 48999999988643 1 233 679999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCc
Q 000615 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSII 1028 (1389)
Q Consensus 949 ~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~il 1028 (1389)
..+.|++|..||+.....++..... +......+.|+.+||.+..+.. +.+|||||+|||+||||++..|+||
T Consensus 97 F~Lip~ltAlENV~lPleL~ge~~~---~~~~~A~~lL~~vGLg~Rl~Hy-----P~qLSGGEQQRVAiARAfa~~P~vL 168 (228)
T COG4181 97 FHLIPNLTALENVALPLELRGESSA---DSRAGAKALLEAVGLGKRLTHY-----PAQLSGGEQQRVALARAFAGRPDVL 168 (228)
T ss_pred eeccccchhhhhccchhhhcCCccc---cHHHHHHHHHHHhCcccccccC-----ccccCchHHHHHHHHHHhcCCCCEE
Confidence 9999999999999998887753222 2234467899999998877666 4589999999999999999999999
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHH-hCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1029 FMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1029 lLDEPTsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|-||||-+||.++...|.+++-.+. +.|.|.|++||||. +...|||.+-|.. |+++.
T Consensus 169 fADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~-G~l~~ 226 (228)
T COG4181 169 FADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRS-GRLVE 226 (228)
T ss_pred eccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeec-ceecc
Confidence 9999999999999999999998885 45999999999975 6788999999974 78764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=321.58 Aligned_cols=199 Identities=28% Similarity=0.402 Sum_probs=170.6
Q ss_pred eeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-hhhhheeeEeccCCCCCCCCCHHHH
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYES 960 (1389)
Q Consensus 882 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~~~~~~~lTv~E~ 960 (1389)
+|+|+|++|+|||+++|+|+||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.+|+.||
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~--p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~ 91 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK--PDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKN 91 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC--CCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHH
Confidence 8999999999999999999999999999999999765 347999999987643 1234679999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHH
Q 000615 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1389)
Q Consensus 961 l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~ 1040 (1389)
+.+..... .....+..+.+.++++.++|.+..++.+ ..||||||||++||++|+.+|++++|||||+|||+.
T Consensus 92 l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 163 (235)
T cd03299 92 IAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVR 163 (235)
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHH
Confidence 98764332 1223344456788999999988777764 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1041 AAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1041 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
++..+.+.|++++++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 164 ~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 214 (235)
T cd03299 164 TKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLN-GKLIQVGKP 214 (235)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEecCH
Confidence 999999999998764 899999999976 56778999999985 899988874
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=324.07 Aligned_cols=208 Identities=25% Similarity=0.351 Sum_probs=172.5
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i~ 68 (241)
T PRK14250 4 IEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID--PTEGSILIDGVDIK 68 (241)
T ss_pred EEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEEhh
Confidence 56777776542 2469999999999999999999999999999999999765 34799999998753
Q ss_pred h---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHH
Q 000615 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgG 1010 (1389)
. ...++.++|++|++.+++ .||+||+.+....+ .. ...++.++++.++|. +..+.. +..||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G 135 (241)
T PRK14250 69 TIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---GE----KNVDVEYYLSIVGLNKEYATRD-----VKNLSGG 135 (241)
T ss_pred hcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---Cc----HHHHHHHHHHHcCCCHHHhhCC-----cccCCHH
Confidence 2 334567999999988876 69999998754321 11 123578899999996 455554 4579999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|.+ |+++..
T Consensus 136 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~-G~i~~~ 213 (241)
T PRK14250 136 EAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNK-GILVEY 213 (241)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 999999999999999999999999999999999999999998764 899999999976 56778999999985 788888
Q ss_pred cCC
Q 000615 1090 GPL 1092 (1389)
Q Consensus 1090 g~~ 1092 (1389)
|+.
T Consensus 214 ~~~ 216 (241)
T PRK14250 214 AKT 216 (241)
T ss_pred CCH
Confidence 875
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=319.74 Aligned_cols=196 Identities=21% Similarity=0.347 Sum_probs=163.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++|++|++.+
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 94 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPT---SGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHL 94 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcCHhHHHHHHHhcEEEEeccccc
Confidence 46999999999999999999999999999999999999887 9999999998765432 1469999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
++.+||+||+.+........ .. +....++.+++.+||++..++.++
T Consensus 95 ~~~~tv~~~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~ 140 (221)
T TIGR02211 95 LPDFTALENVAMPLLIGKKS----------VK------------------------EAKERAYEMLEKVGLEHRINHRPS 140 (221)
T ss_pred CCCCcHHHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCChhhhhCChh
Confidence 98999999998753321100 00 001124567889999887788776
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
. |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|+|++
T Consensus 141 ~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~ 213 (221)
T TIGR02211 141 E-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE 213 (221)
T ss_pred h-----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655678888877764 55 45799999
Q ss_pred EcCCeEE
Q 000615 417 LSEGQIV 423 (1389)
Q Consensus 417 L~~G~iv 423 (1389)
|++|+++
T Consensus 214 l~~G~i~ 220 (221)
T TIGR02211 214 MKDGQLF 220 (221)
T ss_pred EeCCEec
Confidence 9999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=337.90 Aligned_cols=212 Identities=25% Similarity=0.408 Sum_probs=175.7
Q ss_pred CCceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcC
Q 000615 851 QPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG 930 (1389)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g 930 (1389)
.+.+|+|+|+++++. +++++|++|||+|++||.+||+|+|||||||++++|.+..+ .+|+|.|||
T Consensus 348 ~~~~I~F~dV~f~y~------------~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d---~sG~I~IdG 412 (591)
T KOG0057|consen 348 FGGSIEFDDVHFSYG------------PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD---YSGSILIDG 412 (591)
T ss_pred CCCcEEEEeeEEEeC------------CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc---cCCcEEECC
Confidence 345699999998764 23459999999999999999999999999999999998654 379999999
Q ss_pred ccC---ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------cccccc
Q 000615 931 YPK---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVG 1000 (1389)
Q Consensus 931 ~~~---~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g 1000 (1389)
+++ +.+.+|+.+||||||..++. -||.+|+.|+. .+.+.+ +|-++.+..++.+. -++.+|
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn-----~sas~e----eV~e~~k~a~~hd~i~~l~~GY~T~VG 482 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGN-----PSASDE----EVVEACKRAGLHDVISRLPDGYQTLVG 482 (591)
T ss_pred eeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCC-----CCcCHH----HHHHHHHHcCcHHHHHhccccchhhHh
Confidence 975 44678899999999888765 59999999863 233333 35555566665443 344566
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1001 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
..| ..|||||||||+||||++.+|+|+++|||||.||..+...+++.+++.. .|+|+|++.|+. ++...||++++|
T Consensus 483 erG-~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~-~~rTvI~IvH~l--~ll~~~DkI~~l 558 (591)
T KOG0057|consen 483 ERG-LMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM-SGRTVIMIVHRL--DLLKDFDKIIVL 558 (591)
T ss_pred hcc-cccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc-CCCeEEEEEecc--hhHhcCCEEEEE
Confidence 544 3599999999999999999999999999999999999999999999943 589999999985 578999999999
Q ss_pred ecCcEEEEecCC
Q 000615 1081 KRGGRVIYAGPL 1092 (1389)
Q Consensus 1081 ~~gG~~~~~g~~ 1092 (1389)
++ |++...|+.
T Consensus 559 ~n-G~v~e~gth 569 (591)
T KOG0057|consen 559 DN-GTVKEYGTH 569 (591)
T ss_pred EC-CeeEEeccH
Confidence 85 789998885
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-34 Score=325.40 Aligned_cols=194 Identities=21% Similarity=0.280 Sum_probs=166.7
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHHH
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 264 (1389)
++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. .++.++|++|++.+++.+||+|
T Consensus 26 ~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~l~~~~tv~e 100 (257)
T PRK11247 26 TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPS---AGELLAGTAPLAE--AREDTRLMFQDARLLPWKKVID 100 (257)
T ss_pred ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEHHH--hhCceEEEecCccCCCCCcHHH
Confidence 5899999999999999999999999999999999999887 8999999987643 2467999999999998899999
Q ss_pred HHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCC
Q 000615 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1389)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLS 344 (1389)
|+.+.... . ....++.+++.+||++..+..+++ ||
T Consensus 101 nl~~~~~~-----------~-----------------------------~~~~~~~~l~~~gl~~~~~~~~~~-----LS 135 (257)
T PRK11247 101 NVGLGLKG-----------Q-----------------------------WRDAALQALAAVGLADRANEWPAA-----LS 135 (257)
T ss_pred HHHhcccc-----------h-----------------------------HHHHHHHHHHHcCChhHhcCChhh-----CC
Confidence 99874210 0 001245678889998877777766 99
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEE
Q 000615 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1389)
Q Consensus 345 GGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~ 424 (1389)
|||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|+|++|++|++++
T Consensus 136 gGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 136 GGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999998765567877776665 47788999999999999999
Q ss_pred ecChh
Q 000615 425 QGPRD 429 (1389)
Q Consensus 425 ~G~~~ 429 (1389)
+|+.+
T Consensus 215 ~~~~~ 219 (257)
T PRK11247 215 DLTVD 219 (257)
T ss_pred ecccc
Confidence 88764
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=323.51 Aligned_cols=220 Identities=20% Similarity=0.290 Sum_probs=176.0
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... +. +.+|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 367788776542 2469999999999999999999999999999999999753 21 2479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.++.. ..+++.++|++|++.+++.+|++||+.+...... .....+.++.++++++.+++.+....... ..+.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLK-SNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhh-CCcC
Confidence 87532 2456779999999999999999999987543321 11223334567889999998542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||+++|+++ ++.+.||++++|. +|+
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~-~G~ 224 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFY-MGD 224 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999975 689999999976 5678899999997 589
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
++..|+.
T Consensus 225 i~~~~~~ 231 (252)
T PRK14256 225 LVECGET 231 (252)
T ss_pred EEEeCCH
Confidence 9998875
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=324.71 Aligned_cols=201 Identities=24% Similarity=0.329 Sum_probs=168.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++... .+.++|++|++.+++.+||+
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~--~~~~~~v~q~~~~~~~~tv~ 88 (255)
T PRK11248 14 KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ---HGSITLDGKPVEGP--GAERGVVFQNEGLLPWRNVQ 88 (255)
T ss_pred eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCC--CCcEEEEeCCCccCCCCcHH
Confidence 45999999999999999999999999999999999999887 89999999987642 34689999999989889999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
||+.+.....+.. .. + ....++.+++.+||++..++.+++ |
T Consensus 89 e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~~~~~-----L 129 (255)
T PRK11248 89 DNVAFGLQLAGVE----------KM----------Q--------------RLEIAHQMLKKVGLEGAEKRYIWQ-----L 129 (255)
T ss_pred HHHHhHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhHhhCChhh-----C
Confidence 9998753321110 00 0 011356688899998877877766 9
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc--CCe
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~--~G~ 421 (1389)
||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|+ +|+
T Consensus 130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~ 208 (255)
T PRK11248 130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGR 208 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcE
Confidence 999999999999999999999999999999999999999999998654467777776654 57889999999998 599
Q ss_pred EEEecChh
Q 000615 422 IVYQGPRD 429 (1389)
Q Consensus 422 iv~~G~~~ 429 (1389)
++..++.+
T Consensus 209 i~~~~~~~ 216 (255)
T PRK11248 209 VVERLPLN 216 (255)
T ss_pred EEEEecCC
Confidence 99988754
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=341.23 Aligned_cols=194 Identities=26% Similarity=0.408 Sum_probs=168.2
Q ss_pred cceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-------hhhhheeeEeccCCCCCCCCCH
Q 000615 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 885 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
|+|+++++||+++|+|||||||||||++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+||
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 92 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP--DEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSV 92 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcH
Confidence 89999999999999999999999999999997653 47999999987532 1345679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
+||+.|..... ...+.++.++++++.++|.+..++.+ ..|||||||||+|||||+.+|++|+|||||+||
T Consensus 93 ~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 93 RGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred HHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 99998865321 12334456899999999988877764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+.++..+.+.|++++++ |+|||++||+++ ++...+|++++|.+ |+++..|+.
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 216 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLED-GRVAAAGPI 216 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-CEEEEECCH
Confidence 999999999999999765 899999999986 67788999999985 899998875
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=334.85 Aligned_cols=222 Identities=18% Similarity=0.225 Sum_probs=176.3
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--ceEEEEEEEcCcc
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISGYP 932 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g~~ 932 (1389)
++++|++..++.. .+...+|+|||++|++||++||+|+||||||||+++|+|.... .+.+|+|.++|.+
T Consensus 4 L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~ 74 (330)
T PRK15093 4 LDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDID 74 (330)
T ss_pred EEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEE
Confidence 5778887655321 1235699999999999999999999999999999999997542 2357999999987
Q ss_pred CCh---hhh----hheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCC---CcHHHHHHHHHHHHHHcCCcccc---cc
Q 000615 933 KNQ---ETF----ARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSD---VDTKKRKMFVDEVMELVELKSLN---DS 997 (1389)
Q Consensus 933 ~~~---~~~----~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~---~~~~~~~~~v~~~l~~l~L~~~~---~~ 997 (1389)
+.. ... ++.++||+|++. +.|.+||.+++.+......... ....+.++.+.++++.++|.+.. +.
T Consensus 75 i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~ 154 (330)
T PRK15093 75 LLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRS 154 (330)
T ss_pred CCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhC
Confidence 532 111 246999999986 5788999999976422111000 11123456788999999997532 33
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCe
Q 000615 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDE 1076 (1389)
Q Consensus 998 ~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~ 1076 (1389)
. +..|||||||||+||+||+.+|+||+|||||+|||+.++..+++.|+++.++ |.|||+|||+++ .+.+.+|+
T Consensus 155 ~-----p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dr 228 (330)
T PRK15093 155 F-----PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADK 228 (330)
T ss_pred C-----chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCE
Confidence 3 4589999999999999999999999999999999999999999999999874 899999999976 56688999
Q ss_pred EEEEecCcEEEEecCC
Q 000615 1077 LLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1077 ~l~l~~gG~~~~~g~~ 1092 (1389)
+++|. +|++++.|+.
T Consensus 229 i~vm~-~G~ive~g~~ 243 (330)
T PRK15093 229 INVLY-CGQTVETAPS 243 (330)
T ss_pred EEEEE-CCEEEEECCH
Confidence 99997 5899999975
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=330.15 Aligned_cols=204 Identities=25% Similarity=0.362 Sum_probs=170.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCC-CCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDL-HHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~-~~~ 258 (1389)
.++|+|||++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. .+.
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (274)
T PRK13644 15 TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ---KGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFV 91 (274)
T ss_pred CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEECCccccHHHHHhheEEEEEChhhhcc
Confidence 35999999999999999999999999999999999999887 9999999998864321 357999999975 466
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
..||+||+.|+....+.. +. +....++.+++.+||++..++.+++
T Consensus 92 ~~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gl~~~~~~~~~~- 136 (274)
T PRK13644 92 GRTVEEDLAFGPENLCLP----------PI------------------------EIRKRVDRALAEIGLEKYRHRSPKT- 136 (274)
T ss_pred cchHHHHHHhhHHHcCCC----------HH------------------------HHHHHHHHHHHHCCCHHHhcCCccc-
Confidence 789999998864322110 00 0012356678899999888888876
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++.|++. ++ ..+|+|++|+
T Consensus 137 ----LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~~-~~-~~~d~v~~l~ 209 (274)
T PRK13644 137 ----LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNLE-EL-HDADRIIVMD 209 (274)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCHH-HH-hhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999875 4778888777654 55 5799999999
Q ss_pred CCeEEEecChhHHH
Q 000615 419 EGQIVYQGPRDNVL 432 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1389)
+|++++.|+.+++.
T Consensus 210 ~G~i~~~g~~~~~~ 223 (274)
T PRK13644 210 RGKIVLEGEPENVL 223 (274)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999998864
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=331.70 Aligned_cols=211 Identities=20% Similarity=0.242 Sum_probs=170.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CceeEEEECCeeCCCCCc-------CceEEEecCCC-
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-------QRTCAYISQHD- 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d- 254 (1389)
.++|+|||++|++||+++|+|+||||||||+++|+|.+++.. ..+|+|.++|+++..... ++.++||+|++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 569999999999999999999999999999999999987421 248999999999865432 13699999997
Q ss_pred -CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc---c
Q 000615 255 -LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---C 330 (1389)
Q Consensus 255 -~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~---~ 330 (1389)
.+.|.+||.+++....+.... ..+. +....++..++.+||++ .
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~---------~~~~------------------------~~~~~~~~~L~~~gL~~~~~~ 146 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQG---------GNKK------------------------TRRQRAIDLLNQVGIPDPASR 146 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcC---------CCHH------------------------HHHHHHHHHHHHCCCCChHHH
Confidence 478889999998664322100 0000 01123567889999974 3
Q ss_pred ccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhh
Q 000615 331 ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410 (1389)
Q Consensus 331 ~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~ 410 (1389)
.+...++ |||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|+|++.|+ ...+.++
T Consensus 147 l~~~p~~-----LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHd-l~~~~~~ 220 (326)
T PRK11022 147 LDVYPHQ-----LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHD-LALVAEA 220 (326)
T ss_pred HhCCchh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC-HHHHHHh
Confidence 4555544 999999999999999999999999999999999999999999999987667777766654 4577889
Q ss_pred cCeEEEEcCCeEEEecChhHHHH
Q 000615 411 FDDIILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 411 ~D~iilL~~G~iv~~G~~~~~~~ 433 (1389)
+|+|++|++|++++.|+.+++.+
T Consensus 221 adri~vm~~G~ive~g~~~~~~~ 243 (326)
T PRK11022 221 AHKIIVMYAGQVVETGKAHDIFR 243 (326)
T ss_pred CCEEEEEECCEEEEECCHHHHhh
Confidence 99999999999999999998753
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=322.13 Aligned_cols=201 Identities=29% Similarity=0.425 Sum_probs=172.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhhheeeEeccCCCCCCCCCHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
+.+|+|+|+++.+||+++|+||||||||||+++|+|..+ +..|+|.++|.+.... ..++.++|++|++.+++.+|+.
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ--PDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVR 90 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcHH
Confidence 469999999999999999999999999999999999765 3479999999876432 2346799999999999999999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCC
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD 1038 (1389)
||+.+....+. .......+.++++++.+++.+..++.. ..||+||+||++||++|+.+|++++|||||+|||
T Consensus 91 enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl~laral~~~p~llllDEP~~~LD 162 (237)
T TIGR00968 91 DNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYP-----NQLSGGQRQRVALARALAVEPQVLLLDEPFGALD 162 (237)
T ss_pred HHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99987654331 222333456789999999987777653 4799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1039 ARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1039 ~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
+.++..+.+.|++++++ |+|||++||+++ ++.+.+|++++|. +|++++.|+.
T Consensus 163 ~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~-~g~i~~~~~~ 215 (237)
T TIGR00968 163 AKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMS-NGKIEQIGSP 215 (237)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEE-CCEEEEecCH
Confidence 99999999999998765 899999999986 5678899999998 5889998885
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=324.99 Aligned_cols=206 Identities=31% Similarity=0.474 Sum_probs=172.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (258)
T PRK13548 15 RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD---SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF 91 (258)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCEEcccCCHHHhhhheEEEccCCcCCCCC
Confidence 45999999999999999999999999999999999999887 8999999998754332 35699999998888889
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+||+.++....+.. .. .....++.+++.+||++..++.+++
T Consensus 92 tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 134 (258)
T PRK13548 92 TVEEVVAMGRAPHGLS----------RA------------------------EDDALVAAALAQVDLAHLAGRDYPQ--- 134 (258)
T ss_pred CHHHHHHhhhcccCCC----------cH------------------------HHHHHHHHHHHHcCCHhHhcCCccc---
Confidence 9999998753211100 00 0011346678899998888888876
Q ss_pred cCCChhHhhHHHHHHHHh------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 341 RGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
|||||||||+||+||+ .+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|
T Consensus 135 --LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i 211 (258)
T PRK13548 135 --LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRI 211 (258)
T ss_pred --CCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEE
Confidence 9999999999999999 599999999999999999999999999998744567777776654 4788899999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000615 415 ILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (1389)
++|++|++++.|+++++.
T Consensus 212 ~~l~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 212 VLLHQGRLVADGTPAEVL 229 (258)
T ss_pred EEEECCEEEeeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=322.53 Aligned_cols=203 Identities=25% Similarity=0.406 Sum_probs=167.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 18 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 18 IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT---SGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 35999999999999999999999999999999999999887 8999999998765432 3569999999999998
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHh-CCcccccccccCc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDE 338 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~l-gL~~~~dt~vg~~ 338 (1389)
+||+||+.++..... . . +. ...++.+++.+ +|.+..++.+++
T Consensus 95 ~tv~~~l~~~~~~~~---~---------~----------~~--------------~~~~~~~l~~~~~l~~~~~~~~~~- 137 (237)
T PRK11614 95 MTVEENLAMGGFFAE---R---------D----------QF--------------QERIKWVYELFPRLHERRIQRAGT- 137 (237)
T ss_pred CcHHHHHHHhhhccC---h---------h----------HH--------------HHHHHHHHHHHHHHHHHHhCchhh-
Confidence 999999987532110 0 0 00 00123445555 466555666655
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++.+++|++++|+
T Consensus 138 ----LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l~ 211 (237)
T PRK11614 138 ----MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQ-GMTIFLVEQNA-NQALKLADRGYVLE 211 (237)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCcH-HHHHhhCCEEEEEe
Confidence 9999999999999999999999999999999999999999999998763 67877776654 57889999999999
Q ss_pred CCeEEEecChhHHH
Q 000615 419 EGQIVYQGPRDNVL 432 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~ 432 (1389)
+|++++.|+++++.
T Consensus 212 ~G~i~~~~~~~~~~ 225 (237)
T PRK11614 212 NGHVVLEDTGDALL 225 (237)
T ss_pred CCEEEeeCCHHHHh
Confidence 99999999998874
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-34 Score=318.41 Aligned_cols=197 Identities=32% Similarity=0.464 Sum_probs=164.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--cCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 261 (1389)
.++|+|+|+++++| +++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 13 ~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 13 KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS---SGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 36999999999999 99999999999999999999999887 999999998875432 2467999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+.....+.. + .+ ....++.+++.+||++..++.+++
T Consensus 89 v~~~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~---- 130 (211)
T cd03264 89 VREFLDYIAWLKGIP----------S----------KE--------------VKARVDEVLELVNLGDRAKKKIGS---- 130 (211)
T ss_pred HHHHHHHHHHHhCCC----------H----------HH--------------HHHHHHHHHHHCCCHHHHhCchhh----
Confidence 999998754322110 0 00 012356678899998888888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|+ ..++.+++|++++|++|+
T Consensus 131 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~-~~~~~~~~d~i~~l~~g~ 206 (211)
T cd03264 131 -LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHI-VEDVESLCNQVAVLNKGK 206 (211)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCC-HHHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999875 4666666554 457778999999999999
Q ss_pred EEEec
Q 000615 422 IVYQG 426 (1389)
Q Consensus 422 iv~~G 426 (1389)
+++.|
T Consensus 207 i~~~g 211 (211)
T cd03264 207 LVFEG 211 (211)
T ss_pred EEecC
Confidence 98765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=391.47 Aligned_cols=214 Identities=26% Similarity=0.403 Sum_probs=176.2
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--------------------------------------
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-------------------------------------- 224 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-------------------------------------- 224 (1389)
..+||+|+|++|+||+.+||+||||||||||+++|.|+++|.
T Consensus 1180 ~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1259 (1466)
T PTZ00265 1180 NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFS 1259 (1466)
T ss_pred CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccc
Confidence 346999999999999999999999999999999999999972
Q ss_pred -------------CCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHH
Q 000615 225 -------------LRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288 (1389)
Q Consensus 225 -------------~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~ 288 (1389)
...+|+|++||+++++... ++.++||+|++.+|+ .||+|||.|+..
T Consensus 1260 ~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~----------------- 1321 (1466)
T PTZ00265 1260 LTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKE----------------- 1321 (1466)
T ss_pred cccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCC-----------------
Confidence 0138999999999987764 578999999999985 799999998621
Q ss_pred HHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEec
Q 000615 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368 (1389)
Q Consensus 289 e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDE 368 (1389)
+.+.++..+++..++.+ +. +-.|++.+||.||+ .+..||||||||++|||||+++|+||+|||
T Consensus 1322 --------~at~eeI~~A~k~A~l~-----~f---I~~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p~ILLLDE 1384 (1466)
T PTZ00265 1322 --------DATREDVKRACKFAAID-----EF---IESLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREPKILLLDE 1384 (1466)
T ss_pred --------CCCHHHHHHHHHHcCCH-----HH---HHhCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11222333344333321 22 23589999999996 456699999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC----CeEE-EecChhHHHH
Q 000615 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE----GQIV-YQGPRDNVLE 433 (1389)
Q Consensus 369 ptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~----G~iv-~~G~~~~~~~ 433 (1389)
|||+||+.++..|.+.|+++....++|+|+..|++ ++.+.||+|++|++ |+++ ++|+++|+++
T Consensus 1385 aTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1385 ATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred cccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999999999999987532468888887765 67889999999999 9955 8999999863
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=338.43 Aligned_cols=199 Identities=26% Similarity=0.439 Sum_probs=171.0
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-------CcCceEEEecCCCCCCCCCC
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-------VPQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-------~~~~~~~yv~Q~d~~~~~lT 261 (1389)
|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++... ..++.++|++|++.+++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~t 91 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPD---EGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLS 91 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCc
Confidence 999999999999999999999999999999999887 89999999987532 12467999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.|+.+... .. + ....++.+++.+||++..|+.+.+
T Consensus 92 v~enl~~~~~~~~------------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~---- 131 (354)
T TIGR02142 92 VRGNLRYGMKRAR------------PS----------E--------------RRISFERVIELLGIGHLLGRLPGR---- 131 (354)
T ss_pred HHHHHHHHhhccC------------hh----------H--------------HHHHHHHHHHHcCChhHhcCChhh----
Confidence 9999988643110 00 0 011356688999999888888876
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..++|+|++|++|+
T Consensus 132 -LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~ 209 (354)
T TIGR02142 132 -LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGR 209 (354)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCE
Confidence 9999999999999999999999999999999999999999999999875567777776655 57889999999999999
Q ss_pred EEEecChhHHH
Q 000615 422 IVYQGPRDNVL 432 (1389)
Q Consensus 422 iv~~G~~~~~~ 432 (1389)
+++.|+++++.
T Consensus 210 i~~~g~~~~~~ 220 (354)
T TIGR02142 210 VAAAGPIAEVW 220 (354)
T ss_pred EEEECCHHHHh
Confidence 99999998874
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-34 Score=326.66 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=171.0
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCC--
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD-- 254 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d-- 254 (1389)
.+.+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~ 99 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPA---QGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPS 99 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEccccCHHHHHHHhhceEEEecChhh
Confidence 356999999999999999999999999999999999999887 9999999998765422 35699999996
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 333 (1389)
.+++.+||+||+.+...... +..+ + .....++.+++.+||+ +..+.
T Consensus 100 ~~~~~~tv~~~l~~~~~~~~------------------~~~~--~-------------~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 100 AVNPRMTVRQIIGEPLRHLT------------------SLDE--S-------------EQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred hcCCCCCHHHHHHHHHHHhc------------------CCCH--H-------------HHHHHHHHHHHHcCCChhhhhC
Confidence 46678999999976432100 0000 0 0112356678899996 56777
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ ..+.+++|+
T Consensus 147 ~~~~-----LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~ 220 (265)
T TIGR02769 147 LPRQ-----LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSFCQR 220 (265)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHHhcE
Confidence 7765 9999999999999999999999999999999999999999999998765467777776654 477789999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
+++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 221 VAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred EEEEeCCEEEEECCHHHHc
Confidence 9999999999999998874
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-34 Score=326.97 Aligned_cols=223 Identities=21% Similarity=0.282 Sum_probs=177.6
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+..+.. +...+.+.+|+|+|+++++||++||+|||||||||||++|+|...+ .+|+|.++|.+..
T Consensus 5 l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~ 78 (267)
T PRK15112 5 LEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP--TSGELLIDDHPLH 78 (267)
T ss_pred EEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCCEEEECCEECC
Confidence 678888876531100 0001124699999999999999999999999999999999997653 4799999998754
Q ss_pred h---hhhhheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCC
Q 000615 935 Q---ETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LS 1008 (1389)
. ...++.++|++|++. +.+.+|+.|++.+....+. .....+..+.++++++.++|. +..+.. +..||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS 151 (267)
T PRK15112 79 FGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYY-----PHMLA 151 (267)
T ss_pred CCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcC-----chhcC
Confidence 2 223456999999975 5678899999987654332 122334445688999999994 555554 35799
Q ss_pred HHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEE
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1009 gGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~ 1087 (1389)
|||||||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++...||++++|. +|+++
T Consensus 152 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~-~G~i~ 229 (267)
T PRK15112 152 PGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMH-QGEVV 229 (267)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999764 899999999986 5667899999998 48998
Q ss_pred EecCC
Q 000615 1088 YAGPL 1092 (1389)
Q Consensus 1088 ~~g~~ 1092 (1389)
+.|+.
T Consensus 230 ~~~~~ 234 (267)
T PRK15112 230 ERGST 234 (267)
T ss_pred ecCCH
Confidence 88764
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=323.24 Aligned_cols=206 Identities=24% Similarity=0.357 Sum_probs=172.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC----------------cCceE
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----------------PQRTC 247 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----------------~~~~~ 247 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 13 LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPID---EGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 46999999999999999999999999999999999999887 999999999875321 24579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhhc-cCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhC
Q 000615 248 AYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1389)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lg 326 (1389)
+|++|++.+++.+||.||+.++... .+.. . .+ ....++..++.+|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~g 135 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMA----------R----------AE--------------AEKRAMELLDMVG 135 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCC----------H----------HH--------------HHHHHHHHHHHcC
Confidence 9999999999999999999875321 0000 0 00 0112456788999
Q ss_pred CcccccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcch
Q 000615 327 LDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1389)
Q Consensus 327 L~~~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~ 406 (1389)
|++..+..+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .+
T Consensus 136 l~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~ 209 (252)
T TIGR03005 136 LADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GF 209 (252)
T ss_pred ChhHhhcChhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HH
Confidence 98877777655 9999999999999999999999999999999999999999999998765567777777665 47
Q ss_pred HHhhcCeEEEEcCCeEEEecChhHHH
Q 000615 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 407 ~~~~~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
+.+++|++++|++|++++.|+.+++.
T Consensus 210 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 210 AREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 88899999999999999999988764
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=321.24 Aligned_cols=196 Identities=22% Similarity=0.297 Sum_probs=166.2
Q ss_pred cceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh-hhhheeeEeccCCCCCCCCCHHHHHHH
Q 000615 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE-TFARVSGYCEQNDIHSPYVTVYESLLY 963 (1389)
Q Consensus 885 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~-~~~~~~gyv~Q~~~~~~~lTv~E~l~f 963 (1389)
|||+++++||++||+||||||||||+++|+|... +.+|+|.++|.+.... ..++.++|++|++.+++.+|+.||+.+
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~ 94 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT--PASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGL 94 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhc
Confidence 8999999999999999999999999999999765 3479999999875421 124579999999999999999999987
Q ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHH
Q 000615 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1389)
Q Consensus 964 ~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~ 1043 (1389)
..... ... .+..++.++++++.+++.+..++.+ ..||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 95 ~~~~~--~~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~ 166 (232)
T PRK10771 95 GLNPG--LKL-NAAQREKLHAIARQMGIEDLLARLP-----GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQ 166 (232)
T ss_pred ccccc--cCC-CHHHHHHHHHHHHHcCcHHHHhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 53211 111 1233556899999999988777764 479999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
.+.+.|+++.++ |+|||+++|++. ++.+.+|++++|.+ |++++.|+.
T Consensus 167 ~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-g~i~~~g~~ 214 (232)
T PRK10771 167 EMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVAD-GRIAWDGPT 214 (232)
T ss_pred HHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 999999998764 899999999976 56778999999985 899998875
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=339.89 Aligned_cols=191 Identities=26% Similarity=0.387 Sum_probs=166.7
Q ss_pred cceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-------hhhhheeeEeccCCCCCCCCCH
Q 000615 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-------ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 885 ~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-------~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
|+|++|++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.++|.+||
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p--~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 93 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP--QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKV 93 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcH
Confidence 89999999999999999999999999999997653 47999999986532 2345779999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
+||+.|... ....+.++++++.++|.+..+..+ ..|||||||||+|||+|+.+|++|+|||||+||
T Consensus 94 ~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 94 RGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred HHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 999987532 112345889999999988777764 579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1038 DARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
|+.++..+++.|+++.++ |+|||++||+++ ++...+|++++|.+ |+++..|+..
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 214 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQ-GKVKAFGPLE 214 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeC-CEEEEecCHH
Confidence 999999999999999765 899999999986 67888999999985 8999998753
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=322.02 Aligned_cols=215 Identities=23% Similarity=0.276 Sum_probs=174.5
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.+.++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (251)
T PRK14270 4 KMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDG 70 (251)
T ss_pred EEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECC
Confidence 467778776442 246999999999999999999999999999999999964321 2479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++ .|++||+.|....... ....+..++++++++.+++.+ ..+..
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14270 71 KNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKS--- 144 (251)
T ss_pred EecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 87632 234567999999998887 8999999886543211 122344456788999998743 23332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|.
T Consensus 145 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l~ 220 (251)
T PRK14270 145 --ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFFL 220 (251)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999876 699999999976 5778899999997
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+|++++.|+.
T Consensus 221 -~G~i~~~~~~ 230 (251)
T PRK14270 221 -MGDLIEFNKT 230 (251)
T ss_pred -CCeEEEeCCH
Confidence 4899998875
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=320.19 Aligned_cols=201 Identities=24% Similarity=0.328 Sum_probs=166.2
Q ss_pred eeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc--eEEEEEEEcCccCChhhh-hheeeEeccCCC--CCCCCC
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG--YIEGDIKISGYPKNQETF-ARVSGYCEQNDI--HSPYVT 956 (1389)
Q Consensus 882 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g--~~~G~i~i~g~~~~~~~~-~~~~gyv~Q~~~--~~~~lT 956 (1389)
+|+|||++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|.+...... ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 578999999999999999999999999999999976520 147999999987654333 357999999984 557789
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc---ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK---SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~---~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
+.|++.+...... . ..+...+.++++++.+++. +..+.. +..|||||||||+||++|+.+|+||+||||
T Consensus 81 ~~~~~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG--K-LSKQARALILEALEAVGLPDPEEVLKKY-----PFQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC--c-cHHHHHHHHHHHHHHcCCCchHHHHhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977543221 1 1233445689999999997 344444 457999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|+|||+.++..+.+.|++++++ |+|||+++|+++ ++...+|++++|.+ |+++..|+.
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 210 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDD-GRIVERGTV 210 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999998764 899999999986 57778999999985 899988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.46 Aligned_cols=209 Identities=25% Similarity=0.324 Sum_probs=172.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1389)
+++|+|||++|++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 35899999999999999999999999999999999999886222399999999886432 2357999999974 5677
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
.||+||+.|..+..+.. .. +....++.+++.+||++..++.+.+
T Consensus 100 ~tv~enl~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~L~~~~~~~~~~-- 143 (282)
T PRK13640 100 ATVGDDVAFGLENRAVP----------RP------------------------EMIKIVRDVLADVGMLDYIDSEPAN-- 143 (282)
T ss_pred CCHHHHHHhhHHhCCCC----------HH------------------------HHHHHHHHHHHHCCChhHhcCCccc--
Confidence 99999998753321110 00 0112356678899999888888765
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++ ..+|++++|++
T Consensus 144 ---LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~-~~~d~i~~l~~ 218 (282)
T PRK13640 144 ---LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EA-NMADQVLVLDD 218 (282)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987655778888877764 45 57999999999
Q ss_pred CeEEEecChhHHHH
Q 000615 420 GQIVYQGPRDNVLE 433 (1389)
Q Consensus 420 G~iv~~G~~~~~~~ 433 (1389)
|++++.|+++++.+
T Consensus 219 G~i~~~g~~~~~~~ 232 (282)
T PRK13640 219 GKLLAQGSPVEIFS 232 (282)
T ss_pred CEEEEeCCHHHHhc
Confidence 99999999988753
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=322.81 Aligned_cols=215 Identities=26% Similarity=0.315 Sum_probs=173.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||++||+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 367888876542 2469999999999999999999999999999999999632 2 12379999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ..+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++.+ ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKG--IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 87531 234567999999998877 899999987643321 1112333456788899998753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 699999999976 5778899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |++++.|+.
T Consensus 222 ~-G~i~~~g~~ 231 (252)
T PRK14239 222 D-GDLIEYNDT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 889998875
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=323.77 Aligned_cols=219 Identities=21% Similarity=0.293 Sum_probs=174.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1389)
.++++|+++.++ .+.+|+|+|++|++||+++|+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 12 ~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 12 VYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred eEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 478888876542 2469999999999999999999999999999999999653 11 1479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.+... ...++.+||++|++.+++. ||+||+.+....+. ....++..+.++++++.+++.+....... ..+.
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~ 154 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHG--TKNKKKLQEIVEKSLKDVALWDEVKDRLH-TQAL 154 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhhhh-CCcc
Confidence 87531 2345679999999988875 99999987643321 11223344567889999998542111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
.||||||||++||++|+.+|+||+|||||+|||+.++..+++.|+++.+ ++|||+++|+++ ++.+.+|++++|+ +|+
T Consensus 155 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~-~G~ 231 (259)
T PRK14274 155 SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFFY-MGE 231 (259)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999865 799999999986 5778899999997 589
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
++..|+.
T Consensus 232 i~~~g~~ 238 (259)
T PRK14274 232 LVECNDT 238 (259)
T ss_pred EEEECCH
Confidence 9998875
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=321.70 Aligned_cols=206 Identities=22% Similarity=0.363 Sum_probs=168.8
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCC-----CcCceEEEecCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1389)
.+|+|+|++|++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++... ..++.++|++|++.++
T Consensus 15 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 94 (247)
T TIGR00972 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPF 94 (247)
T ss_pred eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcccC
Confidence 5899999999999999999999999999999999998763 12389999999987642 1246799999999888
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----ccccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~dt 333 (1389)
+ +||+||+.+..+..+... .. + ....++.+++.+||. +..++
T Consensus 95 ~-~tv~e~l~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 140 (247)
T TIGR00972 95 P-MSIYDNIAYGPRLHGIKD---------KK----------E--------------LDEIVEESLKKAALWDEVKDRLHD 140 (247)
T ss_pred C-CCHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCCcchhhHhhC
Confidence 8 999999988643221000 00 0 011346678889997 56666
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 141 ~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~ 212 (247)
T TIGR00972 141 SALG-----LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDR 212 (247)
T ss_pred Cccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCE
Confidence 6665 999999999999999999999999999999999999999999999876 36777766654 478899999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|+++++|+++++.
T Consensus 213 i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 213 TAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-35 Score=316.65 Aligned_cols=201 Identities=23% Similarity=0.307 Sum_probs=181.1
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---hh---hh-hheeeEeccCCCCCC
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QE---TF-ARVSGYCEQNDIHSP 953 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~---~~-~~~~gyv~Q~~~~~~ 953 (1389)
.-++|+|++++.||++.|||-||||||||+++|.+... +..|+|.++|.++. .. .+ ++.++.|+|+..++|
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP 119 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP 119 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc
Confidence 46899999999999999999999999999999999766 45899999998753 22 23 356999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
+.||.||+.|+..++ ..+++++++++.+.|+.+||....+.. +..|||||||||.|||||+.+|+||+||||
T Consensus 120 hrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~~y-----p~eLSGGMqQRVGLARAla~~~~IlLMDEa 191 (386)
T COG4175 120 HRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYADKY-----PNELSGGMQQRVGLARALANDPDILLMDEA 191 (386)
T ss_pred chhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhhcC-----cccccchHHHHHHHHHHHccCCCEEEecCc
Confidence 999999999998776 567788999999999999999999988 458999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+|.|||--+..+++.|.++.++ ++|||++|||++ |.+..-||+.+|+ +|+++..|++.
T Consensus 192 FSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~rIaimk-dG~ivQ~Gtp~ 250 (386)
T COG4175 192 FSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGDRIAIMK-DGEIVQVGTPE 250 (386)
T ss_pred hhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccceEEEec-CCeEEEeCCHH
Confidence 9999999999999999988654 899999999997 7889999999997 69999999874
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=320.20 Aligned_cols=204 Identities=23% Similarity=0.298 Sum_probs=167.8
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC----CCCceeEEEECCeeCCCCCc-CceEEEecCCCC--CCC
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK----DLRASGKITYCGHELNEFVP-QRTCAYISQHDL--HHG 258 (1389)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~----~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~ 258 (1389)
+|+|+|+++++|++++|+||||||||||+++|+|.++| + +|+|.++|+++..... ++.++|++|++. +.+
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQT---SGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcc---ccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 57999999999999999999999999999999999987 5 8999999998765432 257999999974 556
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc---ccccccc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD---ICADTMV 335 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~---~~~dt~v 335 (1389)
.+|+.|++.+.....+.. .. +....++.+++.+||+ +..++.+
T Consensus 78 ~~t~~~~~~~~~~~~~~~---------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 123 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKL---------SK-------------------------QARALILEALEAVGLPDPEEVLKKYP 123 (230)
T ss_pred ccCHHHHHHHHHHHcCcc---------HH-------------------------HHHHHHHHHHHHcCCCchHHHHhCCh
Confidence 789999997653221100 00 0012356688899998 3456666
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..++|+|+
T Consensus 124 ~~-----LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~ 197 (230)
T TIGR02770 124 FQ-----LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVA 197 (230)
T ss_pred hh-----cCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 55 9999999999999999999999999999999999999999999998764467777776655 47888999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000615 416 LLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1389)
+|++|+++..|+++++.
T Consensus 198 ~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 198 VMDDGRIVERGTVKEIF 214 (230)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988874
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=330.44 Aligned_cols=205 Identities=22% Similarity=0.329 Sum_probs=169.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-------cCceEEEecCCCC-
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDL- 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~- 255 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~ 96 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS---SGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEA 96 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEECccccccchHHHHHhceEEEEeChhh
Confidence 45999999999999999999999999999999999999987 999999999875321 1357999999962
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 334 (1389)
.+..+||+||+.|+....+.. +. +....++.+++.+||+ +..++.
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 142 (287)
T PRK13641 97 QLFENTVLKDVEFGPKNFGFS----------ED------------------------EAKEKALKWLKKVGLSEDLISKS 142 (287)
T ss_pred hhccchHHHHHHHHHHHcCCC----------HH------------------------HHHHHHHHHHHHcCCChhHhhCC
Confidence 333689999998864321110 00 0012356688899997 567888
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ .+.|++++.| ...++.++||+|
T Consensus 143 ~~~-----LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH-~~~~~~~~~d~v 215 (287)
T PRK13641 143 PFE-----LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTH-NMDDVAEYADDV 215 (287)
T ss_pred ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeC-CHHHHHHhCCEE
Confidence 776 999999999999999999999999999999999999999999999865 3667766655 556888999999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000615 415 ILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (1389)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=332.03 Aligned_cols=221 Identities=21% Similarity=0.267 Sum_probs=176.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.++++|+++.++. +.+.+|+|||++|++||++||+|+||||||||+++|+|.... .+.+|+|.++|
T Consensus 80 ~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 80 VFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred eEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 5789998876531 124599999999999999999999999999999999996431 23479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.++.. ..+++.++||+|++.+++ .|++||+.|...... ....+..++.+.++++.++|.+-.+..++. ...
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~-~~~ 224 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK-AGN 224 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC-Ccc
Confidence 98642 245678999999998875 799999998643221 111222334578889998875433333332 245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
+||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+|++++|+ +|+
T Consensus 225 ~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~-~G~ 301 (329)
T PRK14257 225 ALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFY-QGW 301 (329)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEE-CCE
Confidence 7999999999999999999999999999999999999999999999875 799999999976 4666799999998 589
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
+++.|++
T Consensus 302 i~e~g~~ 308 (329)
T PRK14257 302 IEEAGET 308 (329)
T ss_pred EEEeCCH
Confidence 9999986
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=319.05 Aligned_cols=196 Identities=24% Similarity=0.319 Sum_probs=163.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d~~~ 257 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.++
T Consensus 15 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~ 91 (222)
T PRK10908 15 RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS---AGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLL 91 (222)
T ss_pred CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEcccCChhHHHHHHhheEEEecCcccc
Confidence 46999999999999999999999999999999999999887 999999999876432 235799999999888
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+||+||+.+.....+... .+ ....++..++.+||++..++.+++
T Consensus 92 ~~~tv~~~l~~~~~~~~~~~--------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 137 (222)
T PRK10908 92 MDRTVYDNVAIPLIIAGASG--------------------DD--------------IRRRVSAALDKVGLLDKAKNFPIQ 137 (222)
T ss_pred ccccHHHHHHhHHHhcCCCH--------------------HH--------------HHHHHHHHHHHcCChhhhhCCchh
Confidence 89999999988543221100 00 011245678889998877777766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++. +.|++++.|++ .++...+|+|++|
T Consensus 138 -----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~~tiii~sH~~-~~~~~~~d~i~~l 210 (222)
T PRK10908 138 -----LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRV-GVTVLMATHDI-GLISRRSYRMLTL 210 (222)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998653 66777666554 5788899999999
Q ss_pred cCCeEE
Q 000615 418 SEGQIV 423 (1389)
Q Consensus 418 ~~G~iv 423 (1389)
++|+++
T Consensus 211 ~~G~i~ 216 (222)
T PRK10908 211 SDGHLH 216 (222)
T ss_pred ECCEEc
Confidence 999985
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-34 Score=327.99 Aligned_cols=206 Identities=24% Similarity=0.313 Sum_probs=172.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC----cCceEEEecCCCC-CCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----PQRTCAYISQHDL-HHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~----~~~~~~yv~Q~d~-~~~ 258 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++. .+.
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS---EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV 99 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEeccccccHHHHhhheEEEecChhhhhc
Confidence 46999999999999999999999999999999999999987 999999999886422 2467999999974 233
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~ 338 (1389)
..||.||+.|+....+.. .. + ....++.+++.+||++..++.+++
T Consensus 100 ~~~v~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gL~~~~~~~~~~- 144 (280)
T PRK13633 100 ATIVEEDVAFGPENLGIP----------PE----------E--------------IRERVDESLKKVGMYEYRRHAPHL- 144 (280)
T ss_pred cccHHHHHHhhHhhcCCC----------HH----------H--------------HHHHHHHHHHHCCCHhHhhCCccc-
Confidence 469999998864322110 00 0 012356788999999888888876
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++. ++.. +|++++|+
T Consensus 145 ----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~-~~~~-~d~v~~l~ 218 (280)
T PRK13633 145 ----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYME-EAVE-ADRIIVMD 218 (280)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHhc-CCEEEEEE
Confidence 99999999999999999999999999999999999999999999997655778888877765 5544 99999999
Q ss_pred CCeEEEecChhHHHH
Q 000615 419 EGQIVYQGPRDNVLE 433 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1389)
+|+++++|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 219 SGKVVMEGTPKEIFK 233 (280)
T ss_pred CCEEEEecCHHHHhc
Confidence 999999999998753
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.59 Aligned_cols=206 Identities=20% Similarity=0.298 Sum_probs=165.0
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CceeEEEECCeeCCCC-----CcCceEEEecCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1389)
++|+|+|++|++||+++|+||||||||||+++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++..+
T Consensus 21 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 100 (254)
T PRK14273 21 KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPF 100 (254)
T ss_pred eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccccc
Confidence 58999999999999999999999999999999999987621 1389999999987421 1246799999998887
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCC----cccccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICADT 333 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL----~~~~dt 333 (1389)
+ +||+||+.|+....+... . .+ ....++..++.+|| ++..|+
T Consensus 101 ~-~tv~eni~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~l~~~~~~ 146 (254)
T PRK14273 101 L-MSIYDNISYGPKIHGTKD---------K----------KK--------------LDEIVEQSLKKSALWNEVKDKLNT 146 (254)
T ss_pred c-CcHHHHHHHHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHhCCchhhHHHHhC
Confidence 4 899999988643221000 0 00 01124456677776 344566
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|+
T Consensus 147 ~~~~-----LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d~ 218 (254)
T PRK14273 147 NALS-----LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISDR 218 (254)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCE
Confidence 6655 999999999999999999999999999999999999999999999854 56777766654 478889999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|+++.+|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998874
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=323.81 Aligned_cols=221 Identities=22% Similarity=0.289 Sum_probs=174.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... +..++|++|++.+++.
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 18 LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT---GGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC---cceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 46999999999999999999999999999999999999887 9999999998765432 2358999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++....... +....+... ....+ .. .+....++..++.+||++..++.+++
T Consensus 95 ~tv~enl~~~~~~~~~~---~~~~~~~~~---~~~~~--~~-----------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 153 (255)
T PRK11300 95 MTVIENLLVAQHQQLKT---GLFSGLLKT---PAFRR--AE-----------SEALDRAATWLERVGLLEHANRQAGN-- 153 (255)
T ss_pred CcHHHHHHHhhhccccc---hhhhhhccc---ccccc--ch-----------hHHHHHHHHHHHhCChhhhhhCChhh--
Confidence 99999999864311000 000000000 00000 00 00112356678899998888888876
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++
T Consensus 154 ---LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~ 229 (255)
T PRK11300 154 ---LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGISDRIYVVNQ 229 (255)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999998765467777776654 588899999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|++++.|+.+++.
T Consensus 230 g~i~~~~~~~~~~ 242 (255)
T PRK11300 230 GTPLANGTPEEIR 242 (255)
T ss_pred CeEEecCCHHHHh
Confidence 9999999988764
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=319.46 Aligned_cols=202 Identities=27% Similarity=0.322 Sum_probs=167.5
Q ss_pred eeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHHHHH
Q 000615 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETL 266 (1389)
Q Consensus 187 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 266 (1389)
|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ..+|++|++.+++.+||+||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~--~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPT---SGGVILEGKQITEPGP--DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCh--hheEEecCcccCCCCCHHHHH
Confidence 57999999999999999999999999999999999887 9999999998865432 248999999999999999999
Q ss_pred HHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChh
Q 000615 267 DFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGG 346 (1389)
Q Consensus 267 ~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGG 346 (1389)
.+........ .... +....++.+++.+||++..++.+++ ||||
T Consensus 76 ~~~~~~~~~~--------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LSgG 118 (230)
T TIGR01184 76 ALAVDRVLPD--------LSKS------------------------ERRAIVEEHIALVGLTEAADKRPGQ-----LSGG 118 (230)
T ss_pred HHHHHhcccC--------CCHH------------------------HHHHHHHHHHHHcCCHHHHcCChhh-----CCHH
Confidence 8753200000 0000 0011346678899999888888776 9999
Q ss_pred HhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEec
Q 000615 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1389)
Q Consensus 347 qkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G 426 (1389)
|||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|+++..|
T Consensus 119 ~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 119 MKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEeccc
Confidence 999999999999999999999999999999999999999998765567877777665 4788999999999999999998
Q ss_pred ChhHH
Q 000615 427 PRDNV 431 (1389)
Q Consensus 427 ~~~~~ 431 (1389)
+..++
T Consensus 198 ~~~~~ 202 (230)
T TIGR01184 198 QILEV 202 (230)
T ss_pred Cceec
Confidence 76544
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-34 Score=323.31 Aligned_cols=216 Identities=22% Similarity=0.306 Sum_probs=175.8
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc-e--EEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-Y--IEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g-~--~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|..... + .+|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 467888876542 245999999999999999999999999999999999965421 2 479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++ .||+||+.+....+. ..+..+.++.+.++++.+++.+ ..+..
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 147 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNKS--- 147 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcCC---
Confidence 87532 234567999999998887 899999987654332 1122333456788899998842 33332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 148 --~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 148 --ALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 457999999999999999999999999999999999999999999999865 699999999987 6788899999997
Q ss_pred c----CcEEEEecCC
Q 000615 1082 R----GGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~----gG~~~~~g~~ 1092 (1389)
. +|++++.|+.
T Consensus 224 ~~~~~~G~i~~~~~~ 238 (259)
T PRK14260 224 TDESRIGQMVEFGVT 238 (259)
T ss_pred ccCCCCceEEEeCCH
Confidence 3 4899999875
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-34 Score=309.34 Aligned_cols=190 Identities=52% Similarity=0.874 Sum_probs=160.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCC--CCceEEEEEEEcCc
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK--TGGYIEGDIKISGY 931 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~--~~g~~~G~i~i~g~ 931 (1389)
.++++|+++.++... +...+.+|+|+|+++++||+++|+||||||||||+++|+|.. . +.+|+|.++|.
T Consensus 3 ~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~--~~~G~i~~~g~ 73 (194)
T cd03213 3 TLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL--GVSGEVLINGR 73 (194)
T ss_pred EEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCE
Confidence 467888887653110 001246999999999999999999999999999999999976 4 45899999999
Q ss_pred cCChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHH
Q 000615 932 PKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQ 1011 (1389)
Q Consensus 932 ~~~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGq 1011 (1389)
+......++.++|++|++.+++.+|++||+.+...++ .|||||
T Consensus 74 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~ 116 (194)
T cd03213 74 PLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGE 116 (194)
T ss_pred eCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHH
Confidence 8765456678999999999999999999997643110 499999
Q ss_pred HHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1012 RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1012 rqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
|||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|++..++.+.+|++++|.+ |++++.|
T Consensus 117 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~-G~i~~~~ 194 (194)
T cd03213 117 RKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ-GRVIYFG 194 (194)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeC-CEEEecC
Confidence 99999999999999999999999999999999999999999877999999999986457788999999985 7887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-34 Score=326.81 Aligned_cols=216 Identities=24% Similarity=0.321 Sum_probs=178.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++. .....+|+|||+++++||++||+|+||||||||+++|+|... +.+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~----------~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~--~~~G~i~~~g~~i 71 (277)
T PRK13642 4 ILEVENLVFKYEK----------ESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE--EFEGKVKIDGELL 71 (277)
T ss_pred eEEEEEEEEEcCC----------CCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEC
Confidence 3678888775531 012359999999999999999999999999999999999765 3479999999876
Q ss_pred Ch---hhhhheeeEeccCCC-CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQ---ETFARVSGYCEQNDI-HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~-~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.. ...++.+||++|++. .++..||.||+.+..... ....++..+.++++++.++|.+..++. +..|||
T Consensus 72 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~ 143 (277)
T PRK13642 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTRE-----PARLSG 143 (277)
T ss_pred CcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCC-----cccCCH
Confidence 42 235677999999974 567789999998764322 123344445689999999998877765 457999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||++|||+|+.+|+||+|||||+|||+.++..+.+.|++++++ |+|||++||+++ ++ ..+|++++|.+ |+++.
T Consensus 144 G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~-~~~d~i~~l~~-G~i~~ 220 (277)
T PRK13642 144 GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EA-ASSDRILVMKA-GEIIK 220 (277)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999976 34 46999999985 78988
Q ss_pred ecCC
Q 000615 1089 AGPL 1092 (1389)
Q Consensus 1089 ~g~~ 1092 (1389)
.|+.
T Consensus 221 ~g~~ 224 (277)
T PRK13642 221 EAAP 224 (277)
T ss_pred eCCH
Confidence 8875
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-34 Score=316.62 Aligned_cols=198 Identities=27% Similarity=0.364 Sum_probs=169.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .+.++|++|++.+++.+||+
T Consensus 13 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~~~~~-~~~~~~~~q~~~~~~~~t~~ 88 (223)
T TIGR03740 13 QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPT---SGEIIFDGHPWTRKD-LHKIGSLIESPPLYENLTAR 88 (223)
T ss_pred EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEeccccc-cccEEEEcCCCCccccCCHH
Confidence 46999999999999999999999999999999999999887 999999999875432 35799999999989889999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
||+.+.....+. ....+..+++.+||++..|..+++ |
T Consensus 89 ~~~~~~~~~~~~--------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~-----L 125 (223)
T TIGR03740 89 ENLKVHTTLLGL--------------------------------------PDSRIDEVLNIVDLTNTGKKKAKQ-----F 125 (223)
T ss_pred HHHHHHHHHcCC--------------------------------------CHHHHHHHHHHcCCcHHHhhhHhh-----C
Confidence 999875332110 001245577889999888887766 9
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEE
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv 423 (1389)
|||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++. ++.+.+|+|++|++|+++
T Consensus 126 S~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~ 203 (223)
T TIGR03740 126 SLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHILS-EVQQLADHIGIISEGVLG 203 (223)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEE
Confidence 99999999999999999999999999999999999999999999865 4678777777654 788899999999999999
Q ss_pred EecChhH
Q 000615 424 YQGPRDN 430 (1389)
Q Consensus 424 ~~G~~~~ 430 (1389)
+.|++.+
T Consensus 204 ~~~~~~~ 210 (223)
T TIGR03740 204 YQGKINK 210 (223)
T ss_pred EecChhh
Confidence 9998753
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.22 Aligned_cols=215 Identities=24% Similarity=0.342 Sum_probs=173.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|.... .+.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 367778776542 24699999999999999999999999999999999996431 12479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...++.++.++++++.+++.+ ..+..
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 87542 234667999999988887 8999999886543211 122334556788899988743 22333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +++|||++||+++ ++.+.+|++++|.
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK-KDYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 45799999999999999999999999999999999999999999999985 4899999999976 5778899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |+++..|+.
T Consensus 220 ~-G~i~~~~~~ 229 (250)
T PRK14240 220 N-GEIVEFGDT 229 (250)
T ss_pred C-CEEEEeCCH
Confidence 5 889888864
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-34 Score=326.56 Aligned_cols=205 Identities=28% Similarity=0.394 Sum_probs=169.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-----cCceEEEecCCCC-CC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL-HH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~-~~ 257 (1389)
+++|+|+|++|++||+++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|++. .+
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 91 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT---SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL 91 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEECccccchHHHHHhheEEEeeChhhhh
Confidence 35999999999999999999999999999999999999887 899999999874211 2357999999963 33
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
..+||+||+.++....+. .+.+ ....+..+++.+||++..++.+++
T Consensus 92 ~~~tv~e~i~~~~~~~~~----------~~~~------------------------~~~~~~~~l~~~~L~~~~~~~~~~ 137 (275)
T PRK13639 92 FAPTVEEDVAFGPLNLGL----------SKEE------------------------VEKRVKEALKAVGMEGFENKPPHH 137 (275)
T ss_pred ccccHHHHHHHHHHHcCC----------CHHH------------------------HHHHHHHHHHHCCCchhhcCChhh
Confidence 457999999875321110 0000 011345688899999888888876
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
||||||||++||+||+.+|++++|||||+|||+.++.++.+.|+++++. +.|++++.|+ ..++.++||++++|
T Consensus 138 -----LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~-~~til~vtH~-~~~~~~~~d~i~~l 210 (275)
T PRK13639 138 -----LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKE-GITIIISTHD-VDLVPVYADKVYVM 210 (275)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHC-CCEEEEEecC-HHHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998763 6777777665 45778899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+++++.
T Consensus 211 ~~G~i~~~g~~~~~~ 225 (275)
T PRK13639 211 SDGKIIKEGTPKEVF 225 (275)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999999875
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=320.73 Aligned_cols=212 Identities=25% Similarity=0.369 Sum_probs=172.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 259 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.
T Consensus 15 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 15 FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD---EGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 46999999999999999999999999999999999999887 8999999998764432 2469999999999999
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++...... .+..... .. . ......++..++.+||++..++.+++
T Consensus 92 ~tv~~nl~~~~~~~~~--~~~~~~~----------~~-~-------------~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (242)
T TIGR03411 92 LTVFENLELALPRDKS--VFASLFF----------RL-S-------------AEEKDRIEEVLETIGLADEADRLAGL-- 143 (242)
T ss_pred CCHHHHHHHhhhcccc--ccccccc----------cc-H-------------HHHHHHHHHHHHHcCCchhhcCChhh--
Confidence 9999999885331100 0000000 00 0 00112356788899999888888876
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||+|++|++
T Consensus 144 ---LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~ 217 (242)
T TIGR03411 144 ---LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVLHQ 217 (242)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999865 56777776654 578889999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|+++++|+.+++.
T Consensus 218 g~~~~~~~~~~~~ 230 (242)
T TIGR03411 218 GSVLAEGSLDQVQ 230 (242)
T ss_pred CeEEeeCCHHHHh
Confidence 9999999988763
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=321.26 Aligned_cols=218 Identities=24% Similarity=0.349 Sum_probs=173.7
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcCc
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISGY 931 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g~ 931 (1389)
++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+. +.+|+|.++|.
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 4 IEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred EEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 57778776542 246999999999999999999999999999999999965321 25799999998
Q ss_pred cCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000615 932 PKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1389)
Q Consensus 932 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 1006 (1389)
+... ...++.++|++|++.+++ .|++||+.+...... ....+..++.++++++.+++.+..+... ...+..
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~ 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGTR 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChhh
Confidence 7532 234567999999998887 899999988653321 1122334456788899998854211111 112458
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 147 LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~-G~i 223 (250)
T PRK14262 147 LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYR-GEL 223 (250)
T ss_pred cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999865 799999999976 57788999999985 889
Q ss_pred EEecCC
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~g~~ 1092 (1389)
+..|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14262 224 IEYGPT 229 (250)
T ss_pred EEecCH
Confidence 888874
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=331.14 Aligned_cols=208 Identities=20% Similarity=0.259 Sum_probs=173.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC------cCceEEEecCCC--C
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHD--L 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~------~~~~~~yv~Q~d--~ 255 (1389)
+.+|+|||++|++||+++|+|+||||||||+++|+|.++++ +|+|.++|+++.... .++.++||+|++ .
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~---~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPT---GGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCC---CcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 57999999999999999999999999999999999999886 899999999986543 235799999997 5
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 334 (1389)
+.+.+||.+++.+..+.... +.+. +....+..+++.+||+ ...++.
T Consensus 105 l~p~~~v~~~l~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~gL~~~~~~~~ 151 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTS---------LSAA------------------------ERREKALAMMAKVGLRPEHYDRY 151 (327)
T ss_pred cCCccCHHHHHHHHHHHccC---------CCHH------------------------HHHHHHHHHHHHCCCChHHhcCC
Confidence 88889999999765332100 0000 0112356788999996 466777
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+++ |||||||||+||+||+.+|++|++||||+|||..++.+|++.|+++.+..+.|+|++. |....+.+++|+|
T Consensus 152 p~~-----LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iT-Hdl~~~~~~adrv 225 (327)
T PRK11308 152 PHM-----FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFIS-HDLSVVEHIADEV 225 (327)
T ss_pred Ccc-----CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEe-CCHHHHHHhCCEE
Confidence 765 9999999999999999999999999999999999999999999999876566766655 4556788899999
Q ss_pred EEEcCCeEEEecChhHHHH
Q 000615 415 ILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~~ 433 (1389)
++|++|++++.|+.+++.+
T Consensus 226 ~vm~~G~ive~g~~~~~~~ 244 (327)
T PRK11308 226 MVMYLGRCVEKGTKEQIFN 244 (327)
T ss_pred EEEECCEEEEECCHHHHhc
Confidence 9999999999999998853
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=323.13 Aligned_cols=207 Identities=22% Similarity=0.310 Sum_probs=166.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcCccCCh-----hhhhheeeEeccCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIH 951 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~ 951 (1389)
+.+|+|+||+|++||+++|+|+||||||||+++|+|... +. +.+|+|.++|.+... ...++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999753 11 247999999986532 1346679999999988
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceee
Q 000615 952 SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031 (1389)
Q Consensus 952 ~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLD 1031 (1389)
++. ||.||+.+....+. .....+..++.++++++.++|.+........ .+..||||||||++||++|+.+|+||+||
T Consensus 98 ~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRLKD-SAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred ccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHhhc-ChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 875 99999987643321 1112233445678999999986522111111 24579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||+|||+.++..+.+.|+++. +|+|||+++|++. ++.+.+|++++|++ |++++.|+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~-~~~tiiiisH~~~-~~~~~~d~i~~l~~-G~i~~~~~~ 232 (251)
T PRK14244 175 EPCSALDPVATNVIENLIQELK-KNFTIIVVTHSMK-QAKKVSDRVAFFQS-GRIVEYNTT 232 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHhhcCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999999985 4899999999976 56778999999985 899988874
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=320.72 Aligned_cols=219 Identities=24% Similarity=0.285 Sum_probs=173.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 356777775442 346999999999999999999999999999999999965421 2479999999
Q ss_pred ccCC----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000615 931 YPKN----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1389)
Q Consensus 931 ~~~~----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 1006 (1389)
.+.. ....++.++|++|++.+++ .||.||+.+...... ....+...+.+.++++.+++.+....... ..+..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLK-SHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhh-cCccc
Confidence 8753 2245667999999998887 899999987643221 11123334567888888887532111111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.+ |++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~-G~i 222 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLM-GEL 222 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999875 699999999986 57788999999985 899
Q ss_pred EEecCC
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~g~~ 1092 (1389)
+..|+.
T Consensus 223 ~~~g~~ 228 (249)
T PRK14253 223 VEHDDT 228 (249)
T ss_pred EEeCCH
Confidence 988874
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=317.66 Aligned_cols=206 Identities=27% Similarity=0.342 Sum_probs=175.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-cCceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV 262 (1389)
+++|+|+|++++||++++|+||||||||||+++|+|.++|+ +|+|+++|+++.... .++.++|++|++..++.+||
T Consensus 13 ~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (232)
T cd03300 13 FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPT---SGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTV 89 (232)
T ss_pred eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcceEEEecccccCCCCcH
Confidence 36999999999999999999999999999999999999987 899999999886543 24679999999999988999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+.....+.. +. .....++.+++.+||++..++.+.+
T Consensus 90 ~~nl~~~~~~~~~~---------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (232)
T cd03300 90 FENIAFGLRLKKLP---------------------KA-------------EIKERVAEALDLVQLEGYANRKPSQ----- 130 (232)
T ss_pred HHHHHHHHHhcCCC---------------------HH-------------HHHHHHHHHHHHcCCchhhcCChhh-----
Confidence 99998764322110 00 0011356788899999888887765
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|++++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~ 209 (232)
T cd03300 131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKI 209 (232)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998765477888887766 467889999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (232)
T cd03300 210 QQIGTPEEIY 219 (232)
T ss_pred EecCCHHHHH
Confidence 9999887764
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=358.90 Aligned_cols=210 Identities=28% Similarity=0.394 Sum_probs=175.6
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++++|++|.++. .++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 476 ~~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p--~~G~I~idg~~ 542 (710)
T TIGR03796 476 GYVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP--WSGEILFDGIP 542 (710)
T ss_pred CeEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCcEEEECCEe
Confidence 46899999997742 124699999999999999999999999999999999997663 47999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
.. ...+++.+|||+|++.+++ .|++||+.++. .+.++ +.++++++..++.+. .|+.+|..
T Consensus 543 i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~-----~~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~e~ 612 (710)
T TIGR03796 543 REEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD-----PTIPD----ADLVRACKDAAIHDVITSRPGGYDAELAEG 612 (710)
T ss_pred HHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC-----CCCCH----HHHHHHHHHhCCHHHHHhCcCcccceeccC
Confidence 53 4567899999999998875 59999997641 12222 336777888877654 34556543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|++ .++|+|++||+++ ....+|++++|++
T Consensus 613 -G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~--~i~~~D~Iivl~~ 686 (710)
T TIGR03796 613 -GANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLS--TIRDCDEIIVLER 686 (710)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHH--HHHhCCEEEEEeC
Confidence 357999999999999999999999999999999999999999999986 4899999999975 5677999999984
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 687 -G~i~~~G~~ 695 (710)
T TIGR03796 687 -GKVVQRGTH 695 (710)
T ss_pred -CEEEEecCH
Confidence 899999984
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=314.85 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=166.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh------hhhhheeeEeccCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ------ETFARVSGYCEQNDIHSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~------~~~~~~~gyv~Q~~~~~~ 953 (1389)
+.+|+||||++++|+++||+|+||||||||+++|+|..+ +.+|+|.++|.+... ...++.++|++|++.+++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS--VQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLG 95 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcC
Confidence 569999999999999999999999999999999999765 357999999987532 134577999999999999
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
.+|+.||+.+...... ....++..+.+.++++.++|.+..+.. +..||+|||||++||++|+.+|++|+||||
T Consensus 96 ~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 96 FLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYY-----PHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 9999999998654321 123344456789999999998777765 357999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1034 TSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
|+|||+.++..+.+.|+++.+ .|+|||+++|+++ ..+.+|++++|.+ |++
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~-g~~ 219 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMED-GKL 219 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEEC-CEE
Confidence 999999999999999999876 4899999999975 5678999999975 654
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=354.75 Aligned_cols=218 Identities=26% Similarity=0.351 Sum_probs=181.4
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+ +++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 5 i~~~~l~~~~-------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p--~~G~i~~~g~~~~ 69 (501)
T PRK10762 5 LQLKGIDKAF-------------PGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR--DAGSILYLGKEVT 69 (501)
T ss_pred EEEeeeEEEe-------------CCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEECC
Confidence 6777877654 234699999999999999999999999999999999997653 4799999998753
Q ss_pred h----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 935 Q----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 935 ~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
. ...++.++|++|++.+++.+||+|++.+....+.. ...+.++.++.++++++.++|.+..+..+ ..|||
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 144 (501)
T PRK10762 70 FNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLV-----GELSI 144 (501)
T ss_pred CCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCH
Confidence 2 11245699999999999999999999886432211 11122334456889999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||||+||++|+.+|++|||||||+|||+.++..+++.|+++++.|.|||++||+++ ++.+.||++++|.+ |+++..
T Consensus 145 G~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~-G~i~~~ 222 (501)
T PRK10762 145 GEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRD-GQFIAE 222 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeC-CEEEEe
Confidence 9999999999999999999999999999999999999999999877999999999986 57788999999985 899998
Q ss_pred cCCCc
Q 000615 1090 GPLGH 1094 (1389)
Q Consensus 1090 g~~~~ 1094 (1389)
|+..+
T Consensus 223 ~~~~~ 227 (501)
T PRK10762 223 REVAD 227 (501)
T ss_pred cCcCc
Confidence 88754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=316.34 Aligned_cols=195 Identities=27% Similarity=0.358 Sum_probs=161.1
Q ss_pred cccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCC
Q 000615 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 875 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~ 954 (1389)
..++++.+|+|+||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+...+.+.
T Consensus 30 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--p~~G~i~~~g~~~~~---------~~~~~~~~~~ 98 (224)
T cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP--PDSGTVTVRGRVSSL---------LGLGGGFNPE 98 (224)
T ss_pred hhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEchh---------hcccccCCCC
Confidence 34556789999999999999999999999999999999999765 347999999976421 1112334577
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+||+||+.+....+. ....+.++.++++++.+++.+..++.+ ..||||||||++|||+|+.+|++|+|||||
T Consensus 99 ~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEP~ 170 (224)
T cd03220 99 LTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPV-----KTYSSGMKARLAFAIATALEPDILLIDEVL 170 (224)
T ss_pred CcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 999999987654321 223344456888999999988777764 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|++++|.+ |++++.|
T Consensus 171 ~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~-G~i~~~g 224 (224)
T cd03220 171 AVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEK-GKIRFDG 224 (224)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEecC
Confidence 999999999999999998777899999999976 56678999999974 7887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-33 Score=357.83 Aligned_cols=211 Identities=23% Similarity=0.378 Sum_probs=176.0
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++++|++|.++. ++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 472 ~~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p--~~G~I~idg~~ 537 (708)
T TIGR01193 472 GDIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA--RSGEILLNGFS 537 (708)
T ss_pred CcEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC--CCcEEEECCEE
Confidence 36899999987631 23599999999999999999999999999999999997663 47999999987
Q ss_pred C---ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 K---NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~---~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
+ +...+++.+|||+|++.+++. |++||+.++.. .+.++ +.++++++..++.+. .|+.+|..
T Consensus 538 i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~----~~~~~----~~i~~a~~~a~l~~~i~~lp~gldt~i~e~ 608 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK----ENVSQ----DEIWAACEIAEIKDDIENMPLGYQTELSEE 608 (708)
T ss_pred HHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC----CCCCH----HHHHHHHHHhCCHHHHHhcccccCcEecCC
Confidence 5 345678899999999998765 99999987521 12222 336677777776543 35566653
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++ +|+|+|+++|+++ ..+.+|++++|++
T Consensus 609 -G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~ 683 (708)
T TIGR01193 609 -GSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDH 683 (708)
T ss_pred -CCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEEC
Confidence 4579999999999999999999999999999999999999999999985 4899999999975 5688999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 684 -G~i~~~G~~ 692 (708)
T TIGR01193 684 -GKIIEQGSH 692 (708)
T ss_pred -CEEEEECCH
Confidence 899999984
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=323.64 Aligned_cols=205 Identities=23% Similarity=0.307 Sum_probs=169.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC----------------CcCceE
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF----------------VPQRTC 247 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~----------------~~~~~~ 247 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 94 (257)
T PRK10619 18 HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRL 94 (257)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEcccccccccccccccchHHHHHhhce
Confidence 46999999999999999999999999999999999999886 89999999887431 113579
Q ss_pred EEecCCCCCCCCCCHHHHHHHhhh-ccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhC
Q 000615 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1389)
Q Consensus 248 ~yv~Q~d~~~~~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lg 326 (1389)
+|++|++.+++.+||+||+.++.. ..+.. . . .....+..+++.+|
T Consensus 95 ~~v~q~~~l~~~~sv~enl~~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~g 140 (257)
T PRK10619 95 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS----------K----------Q--------------EARERAVKYLAKVG 140 (257)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhCCCC----------H----------H--------------HHHHHHHHHHHHcC
Confidence 999999999999999999987431 11000 0 0 00123456788999
Q ss_pred Ccccc-cccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcc
Q 000615 327 LDICA-DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1389)
Q Consensus 327 L~~~~-dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~ 405 (1389)
|++.. +..+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .
T Consensus 141 l~~~~~~~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~ 213 (257)
T PRK10619 141 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-G 213 (257)
T ss_pred CChhhhhCCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-H
Confidence 97653 665554 999999999999999999999999999999999999999999999875 367777776654 5
Q ss_pred hHHhhcCeEEEEcCCeEEEecChhHHH
Q 000615 406 ETYDLFDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 406 ~~~~~~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
++.++||+|++|++|++++.|+++++.
T Consensus 214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 214 FARHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence 778899999999999999999988764
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=319.75 Aligned_cols=201 Identities=24% Similarity=0.366 Sum_probs=167.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++ .
T Consensus 16 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~ 91 (241)
T PRK14250 16 KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPT---EGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G 91 (241)
T ss_pred eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEEhhhcChHHhhhcEEEEecCchhch-h
Confidence 35899999999999999999999999999999999999887 999999999875432 2457999999988876 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccccccCcc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEM 339 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~~~ 339 (1389)
||+||+.+.....+ . ....++.+++.+||+ +..++.+.+
T Consensus 92 tv~e~l~~~~~~~~--~------------------------------------~~~~~~~~l~~~~l~~~~~~~~~~~-- 131 (241)
T PRK14250 92 TVKDNIEYGPMLKG--E------------------------------------KNVDVEYYLSIVGLNKEYATRDVKN-- 131 (241)
T ss_pred hHHHHHhcchhhcC--c------------------------------------HHHHHHHHHHHcCCCHHHhhCCccc--
Confidence 99999976432110 0 001245578889996 456666655
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++
T Consensus 132 ---LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~ 207 (241)
T PRK14250 132 ---LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNK 207 (241)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998764467777776654 478889999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|+++..|+++++.
T Consensus 208 G~i~~~~~~~~~~ 220 (241)
T PRK14250 208 GILVEYAKTYDFF 220 (241)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=325.80 Aligned_cols=204 Identities=22% Similarity=0.337 Sum_probs=167.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-------cCceEEEecCCC--
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHD-- 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d-- 254 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPT---QGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPES 96 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEEccccccccCHHHHHhheEEEeeChhh
Confidence 35999999999999999999999999999999999999887 999999999875421 235699999996
Q ss_pred CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccc
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 333 (1389)
.++ ..||+||+.|.....+.. .. + ....++.+++.+||. ...++
T Consensus 97 ~~~-~~tv~e~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~ 141 (280)
T PRK13649 97 QLF-EETVLKDVAFGPQNFGVS----------QE----------E--------------AEALAREKLALVGISESLFEK 141 (280)
T ss_pred hhc-cccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhhhhC
Confidence 344 479999998754321110 00 0 011245678889997 45677
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+
T Consensus 142 ~~~~-----LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~ 214 (280)
T PRK13649 142 NPFE-----LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADF 214 (280)
T ss_pred Cccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCE
Confidence 7765 999999999999999999999999999999999999999999999875 367877777665 477889999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
+++|++|++++.|+++++.
T Consensus 215 i~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 215 VYVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999998874
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=365.38 Aligned_cols=210 Identities=24% Similarity=0.406 Sum_probs=175.5
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++... +++.+|+|+|++|+||+++||+||||||||||+++|+|.. + .+|+|.+||.+
T Consensus 348 ~~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p--~~G~I~i~g~~ 412 (588)
T PRK11174 348 VTIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P--YQGSLKINGIE 412 (588)
T ss_pred ceEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C--CCcEEEECCEe
Confidence 3689999986432 1246999999999999999999999999999999999976 3 37999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
+. ...+++.++||+|++.++.. |++||+.++. .+.++ ++++++++..++.+. .|+.+|..
T Consensus 413 i~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~-----~~~~~----eei~~al~~a~l~~~i~~lp~G~dT~vge~ 482 (588)
T PRK11174 413 LRELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN-----PDASD----EQLQQALENAWVSEFLPLLPQGLDTPIGDQ 482 (588)
T ss_pred cccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC-----CCCCH----HHHHHHHHHhCHHHHHHhcccccccccccC
Confidence 54 46678899999999998764 9999998852 12333 346777777776543 35667654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
| .+||||||||++|||||+++|+||+||||||+||+.+++.|++.|+++. +++|+|+++|+++ ..+.+|++++|+
T Consensus 483 G-~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~- 557 (588)
T PRK11174 483 A-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQ- 557 (588)
T ss_pred C-CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEe-
Confidence 3 4699999999999999999999999999999999999999999999885 5899999999975 567899999998
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
+|++++.|+.
T Consensus 558 ~G~i~e~G~~ 567 (588)
T PRK11174 558 DGQIVQQGDY 567 (588)
T ss_pred CCeEeecCCH
Confidence 5899999974
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=314.61 Aligned_cols=210 Identities=22% Similarity=0.347 Sum_probs=173.3
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC-C-c-eEEEEEEEcCccC---Chhh---hh-heeeEeccC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT-G-G-YIEGDIKISGYPK---NQET---FA-RVSGYCEQN 948 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~-~-g-~~~G~i~i~g~~~---~~~~---~~-~~~gyv~Q~ 948 (1389)
..++++||||++++||++||+|.|||||||+.++|.|... + + ..+|+|.++|.++ +.+. +| +.++|++|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 3579999999999999999999999999999999999654 2 3 4568999999864 2222 22 469999999
Q ss_pred CC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCC
Q 000615 949 DI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026 (1389)
Q Consensus 949 ~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~ 1026 (1389)
+. +.|.+||.+-+.-....+.... ..++..+++.++|+.+++.+-....-. -+..|||||||||.||.||+.+|+
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~--YPhelSGGMrQRV~IAmala~~P~ 173 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKS--YPHELSGGMRQRVMIAMALALNPK 173 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhh--CCcccCCcHHHHHHHHHHHhCCCC
Confidence 74 7789999888766554432211 345567788999999999864322211 145899999999999999999999
Q ss_pred CceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1027 IIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1027 illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
+||.||||++||...+++|+++|+++.+ .|.|+|++|||+. -+.+.||++.+|. .|++++.|+..
T Consensus 174 LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VMY-aG~iVE~g~~~ 239 (316)
T COG0444 174 LLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVMY-AGRIVEEGPVE 239 (316)
T ss_pred EEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEEE-CcEEEEeCCHH
Confidence 9999999999999999999999999986 5999999999987 4889999999998 59999999963
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=322.54 Aligned_cols=206 Identities=20% Similarity=0.307 Sum_probs=166.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CceeEEEECCeeCCCCC-----cCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.+++.. ..+|+|.++|+++.... .++.++|++|++.+
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 104 (258)
T PRK14268 25 KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNP 104 (258)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCcc
Confidence 358999999999999999999999999999999999987410 13899999999875321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++ +||+||+.|+.+..+.. .. + ....++.+++.+|+. +..+
T Consensus 105 ~~-~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 149 (258)
T PRK14268 105 FP-MSIYDNVAYGPRIHGAN----------KK----------D--------------LDGVVENALRSAALWDETSDRLK 149 (258)
T ss_pred Cc-ccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCCcchhhhhc
Confidence 87 89999998864322110 00 0 011245577788873 3456
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 150 ~~~~~-----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d 221 (258)
T PRK14268 150 SPALS-----LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISD 221 (258)
T ss_pred CChhh-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCC
Confidence 66655 999999999999999999999999999999999999999999999864 56777776654 57788999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|++++.|+++++.
T Consensus 222 ~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 222 YTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=313.46 Aligned_cols=202 Identities=19% Similarity=0.300 Sum_probs=151.9
Q ss_pred CceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCc
Q 000615 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1389)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~ 931 (1389)
|..+-++|++|-++ +.+.++++++|-|.-...+||+||||.||||||++|.|..++ ..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P--~~GE~RKn-- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP--NDGELRKN-- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCC--Ccchhhcc--
Confidence 44566777776543 345789999999999999999999999999999999998764 35654322
Q ss_pred cCChhhhhheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 932 PKNQETFARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 932 ~~~~~~~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.+-++|+..|... +...-|.-|.|.-. + +.+.++ ....|-.+||...++++- ++.|||
T Consensus 648 ------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--F----Nlpyq~----ARK~LG~fGL~sHAHTik----ikdLSG 707 (807)
T KOG0066|consen 648 ------HRLRIGWFDQHANEALNGEETPVEYLQRK--F----NLPYQE----ARKQLGTFGLASHAHTIK----IKDLSG 707 (807)
T ss_pred ------ceeeeechhhhhHHhhccccCHHHHHHHh--c----CCChHH----HHHHhhhhhhhhccceEe----eeecCC
Confidence 2335788877543 33345666655321 1 222222 456788899988888763 578999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
|||-||++|-.-++.|+||||||||++||..+...+-++|++. ...||+++|+-.+ +.+--+.+.++.+.|.-...
T Consensus 708 GQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~Q~i~eId 783 (807)
T KOG0066|consen 708 GQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVENQGIDEID 783 (807)
T ss_pred cchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEccCChhhcc
Confidence 9999999999999999999999999999999999999999886 4679999999763 55666778888776655555
Q ss_pred cCCC
Q 000615 1090 GPLG 1093 (1389)
Q Consensus 1090 g~~~ 1093 (1389)
|...
T Consensus 784 GdFe 787 (807)
T KOG0066|consen 784 GDFE 787 (807)
T ss_pred ccHH
Confidence 6543
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=328.39 Aligned_cols=211 Identities=20% Similarity=0.308 Sum_probs=168.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|..++. ...+|+|.++|+++... ..++.++||+|++++
T Consensus 95 ~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~ 174 (329)
T PRK14257 95 KHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTP 174 (329)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCcc
Confidence 35899999999999999999999999999999999998631 12389999999998632 235679999999998
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
++ .||+||+.|+....+.. .++ . ....++..++.++|.+..++.++
T Consensus 175 ~~-~ti~eNi~~~~~~~~~~----------~~~----------~-------------~~~~~~~~l~~~~L~~~l~~~~~ 220 (329)
T PRK14257 175 FE-MSIFDNVAYGPRNNGIN----------DRK----------I-------------LEKIVEKSLKSAALWDEVKDDLD 220 (329)
T ss_pred CC-CcHHHHHHhHHHhcCCC----------hHH----------H-------------HHHHHHHHHHHcCCcchhhhhhh
Confidence 85 79999999864321100 000 0 01123456677777655555555
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
+ .+..|||||||||+||||++.+|+||+|||||+|||+.+...+.+.|+++.+ +.|+|++.|++ ..+.+.+|+|++
T Consensus 221 ~-~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driiv 296 (329)
T PRK14257 221 K-AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVF 296 (329)
T ss_pred C-CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 3 4566999999999999999999999999999999999999999999998865 56777766654 477788999999
Q ss_pred EcCCeEEEecChhHHH
Q 000615 417 LSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1389)
|++|++++.|+++++.
T Consensus 297 l~~G~i~e~g~~~~l~ 312 (329)
T PRK14257 297 FYQGWIEEAGETKTIF 312 (329)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999999984
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=319.43 Aligned_cols=206 Identities=22% Similarity=0.315 Sum_probs=162.9
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1389)
++|+|+|+++++|++++|+|||||||||||++|+|.++ +....+|+|.++|+++... ..++.++|++|++.++
T Consensus 20 ~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 99 (253)
T PRK14242 20 QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPF 99 (253)
T ss_pred eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCC
Confidence 59999999999999999999999999999999999864 1001389999999987532 1245799999998888
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----cccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADT 333 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~dt 333 (1389)
+ .||+||+.++....+.... .+ ....++..++.+||.+ ..++
T Consensus 100 ~-~tv~enl~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 145 (253)
T PRK14242 100 P-KSIFENVAYGLRVNGVKDK-------------------AY--------------LAERVERSLRHAALWDEVKDRLHE 145 (253)
T ss_pred c-CcHHHHHHHHHHHcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhhHHhhC
Confidence 7 5999999886432211000 00 0112445677778753 2344
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.++ .|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 146 ~~~-----~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~ 217 (253)
T PRK14242 146 SAL-----GLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDV 217 (253)
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCE
Confidence 444 4999999999999999999999999999999999999999999999853 56777766654 478899999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|++++.|+++++.
T Consensus 218 v~~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 218 TAFFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988763
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=322.81 Aligned_cols=205 Identities=20% Similarity=0.278 Sum_probs=170.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1389)
..+|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++. .++.
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (277)
T PRK13642 20 VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEF---EGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVG 96 (277)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEECCcCCHHHHhcceEEEEECHHHhhcc
Confidence 35999999999999999999999999999999999999987 999999999876432 2467999999974 5777
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
.||.||+.++....+.. +.+ ....++.+++.+||.+..++.+.+
T Consensus 97 ~tv~eni~~~~~~~~~~----------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (277)
T PRK13642 97 ATVEDDVAFGMENQGIP----------REE------------------------MIKRVDEALLAVNMLDFKTREPAR-- 140 (277)
T ss_pred CCHHHHHHhhHHHcCCC----------HHH------------------------HHHHHHHHHHHCCCHhHhhCCccc--
Confidence 89999998754321110 000 011356778889998878887765
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+.. ++. .+|+|++|++
T Consensus 141 ---LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~-~~~-~~d~i~~l~~ 215 (277)
T PRK13642 141 ---LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD-EAA-SSDRILVMKA 215 (277)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHH-hCCEEEEEEC
Confidence 99999999999999999999999999999999999999999999987655778888776654 454 6999999999
Q ss_pred CeEEEecChhHHH
Q 000615 420 GQIVYQGPRDNVL 432 (1389)
Q Consensus 420 G~iv~~G~~~~~~ 432 (1389)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~~~ 228 (277)
T PRK13642 216 GEIIKEAAPSELF 228 (277)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998875
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=317.27 Aligned_cols=204 Identities=27% Similarity=0.421 Sum_probs=173.5
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCHHH
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (1389)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 264 (1389)
+|+|+|++|+||++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+|
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~---~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e 90 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD---SGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYK 90 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---ceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHH
Confidence 799999999999999999999999999999999999987 8999999998865332 457999999999999999999
Q ss_pred HHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCC
Q 000615 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1389)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLS 344 (1389)
|+.++....+.. . .+ ....+...++.+||.+..++.+.+ ||
T Consensus 91 ~l~~~~~~~~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~-----LS 131 (235)
T cd03299 91 NIAYGLKKRKVD----------K----------KE--------------IERKVLEIAEMLGIDHLLNRKPET-----LS 131 (235)
T ss_pred HHHHHHHHcCCC----------H----------HH--------------HHHHHHHHHHHcCChhHHhcCccc-----CC
Confidence 998753221100 0 00 011245678889998888888866 99
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEE
Q 000615 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1389)
Q Consensus 345 GGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~ 424 (1389)
|||||||+||+|++.+|++++|||||+|||+.++.++.+.|+++++..+.|++++.|++ +++.+++|+|++|++|++++
T Consensus 132 ~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~ 210 (235)
T cd03299 132 GGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQ 210 (235)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998765577888877765 47888999999999999999
Q ss_pred ecChhHHH
Q 000615 425 QGPRDNVL 432 (1389)
Q Consensus 425 ~G~~~~~~ 432 (1389)
.|+++++.
T Consensus 211 ~~~~~~~~ 218 (235)
T cd03299 211 VGKPEEVF 218 (235)
T ss_pred ecCHHHHH
Confidence 99988764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=321.38 Aligned_cols=221 Identities=22% Similarity=0.293 Sum_probs=176.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.++++|+++.++ ...+|+|+|+++++||++||+|+||||||||+++|+|...+. ...|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 478888876542 235999999999999999999999999999999999975431 1368999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.+... ...++.++|++|++.+++ .|+.||+.+...... ..+..+..+.+.++++.+++.+..+...+ ..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKIH-KSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHhc-CCcc
Confidence 87521 234567999999988887 899999987643221 11223334568899999998542211111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCccHHHHHhhCeEEEEecC-
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRG- 1083 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~~l~l~~g- 1083 (1389)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ++.+.||++++|+++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 7999999999999999999999999999999999999999999999865 4899999999986 677889999999853
Q ss_pred ---cEEEEecCC
Q 000615 1084 ---GRVIYAGPL 1092 (1389)
Q Consensus 1084 ---G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 229 ~~~G~i~~~~~~ 240 (261)
T PRK14258 229 NRIGQLVEFGLT 240 (261)
T ss_pred CcCceEEEeCCH
Confidence 899999875
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=289.08 Aligned_cols=205 Identities=24% Similarity=0.338 Sum_probs=177.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCCHH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 263 (1389)
..+|+|||++|.+|+.++++||||||||||||+++|+.+|. .|+|.+||.+++.. ...-|.|+|++.++|.+||.
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~---~G~i~l~~r~i~gP--gaergvVFQ~~~LlPWl~~~ 92 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPS---RGSIQLNGRRIEGP--GAERGVVFQNEALLPWLNVI 92 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcc---cceEEECCEeccCC--CccceeEeccCccchhhHHH
Confidence 45899999999999999999999999999999999999997 99999999998753 33458999999999999999
Q ss_pred HHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCC
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGL 343 (1389)
||++|+.+.+|.+.. .++ ..+.+.+...||++..+..+-+ |
T Consensus 93 dNvafgL~l~Gi~k~-------~R~---------------------------~~a~q~l~~VgL~~~~~~~i~q-----L 133 (259)
T COG4525 93 DNVAFGLQLRGIEKA-------QRR---------------------------EIAHQMLALVGLEGAEHKYIWQ-----L 133 (259)
T ss_pred HHHHHHHHhcCCCHH-------HHH---------------------------HHHHHHHHHhCcccccccceEe-----e
Confidence 999999998886532 111 2356788899999888888766 9
Q ss_pred ChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc--CCe
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS--EGQ 421 (1389)
Q Consensus 344 SGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~--~G~ 421 (1389)
||||||||.|||||..+|+.|+||||+.+||+-+++++.+.|-++.+..++.+++. +|...|..-++++++||+ .|+
T Consensus 134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lli-TH~ieEAlflatrLvvlsp~pgR 212 (259)
T COG4525 134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLI-THDIEEALFLATRLVVLSPGPGR 212 (259)
T ss_pred cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEE-eccHHHHHhhhheeEEecCCCce
Confidence 99999999999999999999999999999999999999999999988776665554 566778889999999998 489
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
|+..-+++-...
T Consensus 213 vv~~~~~df~rR 224 (259)
T COG4525 213 VVERLPLDFARR 224 (259)
T ss_pred eeEecCCCHHHH
Confidence 998877764433
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=313.99 Aligned_cols=195 Identities=23% Similarity=0.346 Sum_probs=163.7
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCHHHHHH
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1389)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1389)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++.+||+||+.
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~ 92 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQ---SGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVG 92 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHh
Confidence 999999999999999999999999999999999887 8999999998765432 357999999999999999999998
Q ss_pred HhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhH
Q 000615 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1389)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1389)
++....... .. +....++.+++.+||++..++.+.+ |||||
T Consensus 93 ~~~~~~~~~--------------------~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 133 (211)
T cd03298 93 LGLSPGLKL--------------------TA--------------EDRQAIEVALARVGLAGLEKRLPGE-----LSGGE 133 (211)
T ss_pred cccccccCc--------------------cH--------------HHHHHHHHHHHHcCCHHHHhCCccc-----CCHHH
Confidence 753211000 00 0012356688899998888887765 99999
Q ss_pred hhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEec
Q 000615 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQG 426 (1389)
Q Consensus 348 kqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G 426 (1389)
||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|+ ..++.+++|++++|++|++++.|
T Consensus 134 ~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~-~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 134 RQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ-PEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC-HHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999999999999876556777776655 45788899999999999998764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=320.72 Aligned_cols=214 Identities=21% Similarity=0.271 Sum_probs=173.2
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--ceEEEEEEEcC
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--GYIEGDIKISG 930 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g~~~G~i~i~g 930 (1389)
..++++|+++.+ ++.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 3 ~~l~~~~l~~~~--------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQA--------------AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEe--------------ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 357888887654 13599999999999999999999999999999999997653 11579999999
Q ss_pred ccCChhhh-hheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc---cccccccCCCC
Q 000615 931 YPKNQETF-ARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS---LNDSMVGLPGV 1004 (1389)
Q Consensus 931 ~~~~~~~~-~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~---~~~~~~g~~~~ 1004 (1389)
.++..... ++.++|++|++. +.+..|+.+++.+.+.... ... .++.++++++.++|.+ ..+.. +
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~-----~ 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALG---KPA--DDATLTAALEAVGLENAARVLKLY-----P 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHcC---CCh--HHHHHHHHHHHcCCCChhhhhhcC-----C
Confidence 87643323 356999999974 4466899999876443221 111 2256889999999976 23443 4
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
..|||||||||+|||+|+.+|+||||||||+|||+.++..+.+.|++++++ |+|||+++|+++ ++.+.+|++++|. +
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~-~ 216 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMS-H 216 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEE-C
Confidence 579999999999999999999999999999999999999999999998764 899999999976 5667899999997 4
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 217 G~i~~~~~~ 225 (254)
T PRK10418 217 GRIVEQGDV 225 (254)
T ss_pred CEEEEecCH
Confidence 899988874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=322.68 Aligned_cols=216 Identities=24% Similarity=0.313 Sum_probs=175.7
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKIS 929 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~ 929 (1389)
..++++|+++.+. ++.+|+|+||+|++||+++|+|+||||||||+++|+|.... .+.+|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3578889887652 24699999999999999999999999999999999997542 1357999999
Q ss_pred CccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000615 930 GYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1389)
Q Consensus 930 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g 1000 (1389)
|.+... ..+++.++|++|++.+++. |++||+.+...... ....+..++.++++++.+++.+ ..+..
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 165 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQG--INNRRVLDEAVERSLRGAALWDEVKDRLHEN-- 165 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCChhHHHHhhCC--
Confidence 987532 2346789999999988886 99999987653321 1112233456788999998853 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1001 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
+..||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ +.|||++||+++ ++.+.+|++++|
T Consensus 166 ---~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 240 (272)
T PRK14236 166 ---AFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFM 240 (272)
T ss_pred ---cccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999975 799999999976 567789999999
Q ss_pred ecCcEEEEecCC
Q 000615 1081 KRGGRVIYAGPL 1092 (1389)
Q Consensus 1081 ~~gG~~~~~g~~ 1092 (1389)
.+ |+++..|+.
T Consensus 241 ~~-G~i~~~g~~ 251 (272)
T PRK14236 241 YM-GKLVEYGDT 251 (272)
T ss_pred EC-CEEEecCCH
Confidence 85 899988874
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=316.63 Aligned_cols=198 Identities=24% Similarity=0.348 Sum_probs=165.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-------CceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-------QRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+
T Consensus 23 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l 99 (228)
T PRK10584 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS---SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFML 99 (228)
T ss_pred eEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeeEEECCEEcccCCHHHHHHHHhheEEEEEccccc
Confidence 35999999999999999999999999999999999999887 9999999998765432 2469999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
++.+||.||+.+.....+.. . . +....++.+++.+||.+..++.++
T Consensus 100 ~~~~tv~~~l~~~~~~~~~~----------~----------~--------------~~~~~~~~~l~~~~l~~~~~~~~~ 145 (228)
T PRK10584 100 IPTLNALENVELPALLRGES----------S----------R--------------QSRNGAKALLEQLGLGKRLDHLPA 145 (228)
T ss_pred CCCcCHHHHHHHHHHhcCCC----------H----------H--------------HHHHHHHHHHHHcCCHhHhhCChh
Confidence 99999999998753221100 0 0 001235667889999888888877
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++. ++ +.+|++++
T Consensus 146 ~-----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i~~ 218 (228)
T PRK10584 146 Q-----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRRLR 218 (228)
T ss_pred h-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEE
Confidence 6 99999999999999999999999999999999999999999999987655778888877765 55 56999999
Q ss_pred EcCCeEEEe
Q 000615 417 LSEGQIVYQ 425 (1389)
Q Consensus 417 L~~G~iv~~ 425 (1389)
|++|++++.
T Consensus 219 l~~g~i~~~ 227 (228)
T PRK10584 219 LVNGQLQEE 227 (228)
T ss_pred EECCEEEec
Confidence 999999753
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=324.70 Aligned_cols=210 Identities=22% Similarity=0.336 Sum_probs=172.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 24 RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPS---EGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 36999999999999999999999999999999999999887 8999999998754322 35799999998888889
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||.||+.++..... +. . +. .... ....++.+++.+||++..++.+++
T Consensus 101 tv~e~l~~~~~~~~-~~-~-------------~~-~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 147 (265)
T PRK10575 101 TVRELVAIGRYPWH-GA-L-------------GR-FGAA--------------DREKVEEAISLVGLKPLAHRLVDS--- 147 (265)
T ss_pred cHHHHHHhCccccc-cc-c-------------cC-CCHH--------------HHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987532100 00 0 00 0000 012346688899998878888876
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|
T Consensus 148 --LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G 224 (265)
T PRK10575 148 --LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGG 224 (265)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998765467777776654 4788999999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
++++.|+.+++.
T Consensus 225 ~i~~~~~~~~~~ 236 (265)
T PRK10575 225 EMIAQGTPAELM 236 (265)
T ss_pred eEEEecCHHHhc
Confidence 999999988763
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=314.64 Aligned_cols=194 Identities=29% Similarity=0.430 Sum_probs=160.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCC-CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDL-HHGE 259 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~-~~~~ 259 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++. .++.
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPT---SGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFG 90 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEcccCCHHHHHhhceEEecChhhhcCC
Confidence 46999999999999999999999999999999999999887 999999999876432 2357999999974 4667
Q ss_pred CCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcc
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~ 339 (1389)
+||+||+.++....+.. .. + ....++.+++.+||++..++.+++
T Consensus 91 ~t~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~-- 134 (211)
T cd03225 91 PTVEEEVAFGLENLGLP----------EE----------E--------------IEERVEEALELVGLEGLRDRSPFT-- 134 (211)
T ss_pred CcHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCcHhhhcCCccc--
Confidence 89999998753321100 00 0 011345678899998877887766
Q ss_pred ccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcC
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~ 419 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++. +.|+|++.|++ .++..++|+|++|++
T Consensus 135 ---LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~-~~tvi~~sH~~-~~~~~~~d~i~~l~~ 209 (211)
T cd03225 135 ---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAE-GKTIIIVTHDL-DLLLELADRVIVLED 209 (211)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHc-CCEEEEEeCCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999998764 67777776654 578888999999999
Q ss_pred Ce
Q 000615 420 GQ 421 (1389)
Q Consensus 420 G~ 421 (1389)
|+
T Consensus 210 G~ 211 (211)
T cd03225 210 GK 211 (211)
T ss_pred CC
Confidence 85
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.42 Aligned_cols=216 Identities=23% Similarity=0.293 Sum_probs=173.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCce---EEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY---IEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~---~~G~i~i~g 930 (1389)
.+.++|+++.++ ++.+|+|||++|++||++||+|+||||||||+++|+|...+.+ .+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 70 (252)
T PRK14272 4 LLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDG 70 (252)
T ss_pred EEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECC
Confidence 466777776542 3469999999999999999999999999999999999754321 379999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++.+|+.||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 145 (252)
T PRK14272 71 QDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAG--IRDRDHLMEVAERSLRGAALWDEVKDRLKTP--- 145 (252)
T ss_pred EEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCcchhhhhhhcCC---
Confidence 87532 2345679999999999999999999987643221 1122333455677777777642 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|++++|.
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14272 146 --ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999986 5777899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |++++.|+.
T Consensus 222 ~-G~i~~~~~~ 231 (252)
T PRK14272 222 V-GDLVEHGPT 231 (252)
T ss_pred C-CEEEEeCCH
Confidence 5 899988875
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=358.72 Aligned_cols=207 Identities=24% Similarity=0.357 Sum_probs=170.7
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1389)
++|+|+|++++||+.++|+|+||||||||+++|+|+++|+ +|+|.+||.++++... ++.++||+|++.+|+ .|
T Consensus 349 ~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~T 424 (588)
T PRK13657 349 QGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQ---SGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RS 424 (588)
T ss_pred ceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEhhhCCHHHHHhheEEEecCccccc-cc
Confidence 5899999999999999999999999999999999999997 9999999999887653 468999999999886 69
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
++|||.++.. +.+.++..+++...+ .+..+ -.|++..||.+|+. ++
T Consensus 425 i~~Ni~~~~~-------------------------~~~d~~i~~al~~~~------l~~~i--~~lp~gldt~i~~~-g~ 470 (588)
T PRK13657 425 IEDNIRVGRP-------------------------DATDEEMRAAAERAQ------AHDFI--ERKPDGYDTVVGER-GR 470 (588)
T ss_pred HHHHHhcCCC-------------------------CCCHHHHHHHHHHhC------HHHHH--HhCcccccchhcCC-CC
Confidence 9999987521 001111111111111 11111 23678889999873 56
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
.||||||||++|||||+++|+|++||||||+||+.++..+.+.|++..+ ++|+|+..|++ +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~--~~tvIiitHr~--~~~~~~D~ii~l~~G~ 546 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK--GRTTFIIAHRL--STVRNADRILVFDNGR 546 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEEecH--HHHHhCCEEEEEECCE
Confidence 6999999999999999999999999999999999999999999988753 68888888876 5678899999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
++..|+++++++
T Consensus 547 i~~~g~~~~l~~ 558 (588)
T PRK13657 547 VVESGSFDELVA 558 (588)
T ss_pred EEEeCCHHHHHH
Confidence 999999999864
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=322.21 Aligned_cols=219 Identities=25% Similarity=0.301 Sum_probs=176.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.+.++|+++.++ .+.+|+|||++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 21 ~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g 87 (276)
T PRK14271 21 AMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGG 87 (276)
T ss_pred EEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECC
Confidence 468888887653 34699999999999999999999999999999999997542 13589999999
Q ss_pred ccCCh----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000615 931 YPKNQ----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1389)
Q Consensus 931 ~~~~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 1006 (1389)
.+... ...++.++|++|++.+++ .|++||+.+...... ....++....+.++++.+++.+..+.... ..+..
T Consensus 88 ~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~-~~~~~ 163 (276)
T PRK14271 88 RSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLS-DSPFR 163 (276)
T ss_pred EEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhh-CCccc
Confidence 87532 234677999999998887 899999987643221 12333444556788999998653221111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.+ |++
T Consensus 164 LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~-G~i 240 (276)
T PRK14271 164 LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFD-GRL 240 (276)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEEC-CEE
Confidence 999999999999999999999999999999999999999999999876 589999999976 57788999999985 899
Q ss_pred EEecCC
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~g~~ 1092 (1389)
++.|+.
T Consensus 241 ~~~g~~ 246 (276)
T PRK14271 241 VEEGPT 246 (276)
T ss_pred EEeCCH
Confidence 998875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-34 Score=321.37 Aligned_cols=204 Identities=25% Similarity=0.330 Sum_probs=169.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCC------C---CcCceEEEecCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE------F---VPQRTCAYISQHD 254 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~------~---~~~~~~~yv~Q~d 254 (1389)
+.+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++
T Consensus 15 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 15 HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPR---SGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 35999999999999999999999999999999999999887 8999999997631 0 1135799999999
Q ss_pred CCCCCCCHHHHHHHhh-hccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccc
Q 000615 255 LHHGEMTVRETLDFSG-RCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADT 333 (1389)
Q Consensus 255 ~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt 333 (1389)
.+++.+||+||+.+.. ...+.. .. + ....++..++.+||++..++
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~gl~~~~~~ 137 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLS----------KD----------Q--------------ALARAEKLLERLRLKPYADR 137 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCChhhhhC
Confidence 9999999999997531 111100 00 0 01135667889999887888
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ .+.|++++.|++ .++.+++|+
T Consensus 138 ~~~~-----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~ 210 (242)
T PRK11124 138 FPLH-----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASR 210 (242)
T ss_pred Chhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCE
Confidence 7765 999999999999999999999999999999999999999999999865 467777776665 477789999
Q ss_pred EEEEcCCeEEEecChhHH
Q 000615 414 IILLSEGQIVYQGPRDNV 431 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~ 431 (1389)
+++|.+|+++++|+++++
T Consensus 211 i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 211 VVYMENGHIVEQGDASCF 228 (242)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=319.55 Aligned_cols=209 Identities=24% Similarity=0.329 Sum_probs=168.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCCC---cCceEEEecCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV---PQRTCAYISQHDLHHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~ 258 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++.... .++.++|++|++.+++
T Consensus 16 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~ 95 (250)
T PRK14247 16 VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIP 95 (250)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccCC
Confidence 35999999999999999999999999999999999998741 124899999999875432 2457999999998888
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccccc
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTM 334 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~dt~ 334 (1389)
.+||+||+.++.+...... +..+ ....++..++.+||.+ ..|+.
T Consensus 96 ~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~ 143 (250)
T PRK14247 96 NLSIFENVALGLKLNRLVK------------------SKKE--------------LQERVRWALEKAQLWDEVKDRLDAP 143 (250)
T ss_pred CCcHHHHHHHHHHhccccC------------------CHHH--------------HHHHHHHHHHHcCCCcchhhhhcCC
Confidence 9999999988643211000 0000 0112456788888853 35666
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+.+ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+|
T Consensus 144 ~~~-----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i 215 (250)
T PRK14247 144 AGK-----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYV 215 (250)
T ss_pred ccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEE
Confidence 655 999999999999999999999999999999999999999999999853 56777766655 4778899999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000615 415 ILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (1389)
++|++|++++.|+.+++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 216 AFLYKGQIVEWGPTREVF 233 (250)
T ss_pred EEEECCeEEEECCHHHHH
Confidence 999999999999998774
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=321.49 Aligned_cols=215 Identities=25% Similarity=0.308 Sum_probs=173.1
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc-
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP- 932 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~- 932 (1389)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP--DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCccc
Confidence 367888876542 24699999999999999999999999999999999997653 47999999986
Q ss_pred ----CCh---hh----hhheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-ccccc
Q 000615 933 ----KNQ---ET----FARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSM 998 (1389)
Q Consensus 933 ----~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~ 998 (1389)
+.. .. .++.++|++|++. +.+.+|+.||+.+...... .....+....+.++++.+++.+ ..+..
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVG--ARHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 432 11 2346999999974 5677899999876432111 1112234456789999999963 44544
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeE
Q 000615 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDEL 1077 (1389)
Q Consensus 999 ~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~ 1077 (1389)
+..||||||||++|||+|+.+|+||+|||||+|||+.+...+.+.|++++++ |.|||+++|++. .+.+.+|++
T Consensus 149 -----~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i 222 (258)
T PRK11701 149 -----PTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRL 222 (258)
T ss_pred -----CccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEE
Confidence 4579999999999999999999999999999999999999999999998765 899999999976 466689999
Q ss_pred EEEecCcEEEEecCC
Q 000615 1078 LLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1078 l~l~~gG~~~~~g~~ 1092 (1389)
++|.+ |++++.|+.
T Consensus 223 ~~l~~-g~i~~~~~~ 236 (258)
T PRK11701 223 LVMKQ-GRVVESGLT 236 (258)
T ss_pred EEEEC-CEEEEeCCH
Confidence 99985 899998875
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-34 Score=324.14 Aligned_cols=210 Identities=22% Similarity=0.349 Sum_probs=173.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 20 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 96 (265)
T PRK10253 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPA---HGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI 96 (265)
T ss_pred EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC
Confidence 46999999999999999999999999999999999999887 8999999998765332 35699999999998899
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+||+.++..-.. + .. . ... + .....++.+++.+||++..++.+.+
T Consensus 97 tv~~~~~~~~~~~~-~----~~----------~-~~~-~-------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (265)
T PRK10253 97 TVQELVARGRYPHQ-P----LF----------T-RWR-K-------------EDEEAVTKAMQATGITHLADQSVDT--- 143 (265)
T ss_pred cHHHHHHhCccccc-c----cc----------c-CCC-H-------------HHHHHHHHHHHHcCCHHHhcCCccc---
Confidence 99999987521000 0 00 0 000 0 0011346688899998877887766
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
||||||||++||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|+|++|++|
T Consensus 144 --LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G 220 (265)
T PRK10253 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREG 220 (265)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999998764467777776655 4788999999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (265)
T PRK10253 221 KIVAQGAPKEIV 232 (265)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=354.39 Aligned_cols=219 Identities=26% Similarity=0.329 Sum_probs=180.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.+ +++.+|+||||+|++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 5 ~l~~~~l~~~~-------------~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p--~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF-------------GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP--TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc-------------CCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC--CccEEEECCEEC
Confidence 36778877654 234699999999999999999999999999999999997653 479999999875
Q ss_pred Chh----hhhheeeEeccCCCCCCCCCHHHHHHHHHHhh----cCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 934 NQE----TFARVSGYCEQNDIHSPYVTVYESLLYSAWLR----LSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 934 ~~~----~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr----~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
... ..++.++|++|++.+++.+||+||+.+..... .......++..++++++++.++|.+..++.+ .
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 144 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKV-----A 144 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccch-----h
Confidence 321 12346999999999999999999998753211 0000122334466889999999988777764 4
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
.|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||++||+++ ++...||++++|.+ |+
T Consensus 145 ~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~-G~ 222 (510)
T PRK09700 145 NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKD-GS 222 (510)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CE
Confidence 79999999999999999999999999999999999999999999999888999999999976 56778999999984 89
Q ss_pred EEEecCCCc
Q 000615 1086 VIYAGPLGH 1094 (1389)
Q Consensus 1086 ~~~~g~~~~ 1094 (1389)
+++.|+..+
T Consensus 223 i~~~g~~~~ 231 (510)
T PRK09700 223 SVCSGMVSD 231 (510)
T ss_pred Eeeecchhh
Confidence 999988654
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=311.82 Aligned_cols=187 Identities=24% Similarity=0.292 Sum_probs=156.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|||++|++||++||+|+||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 14 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p--~~G~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv 91 (204)
T PRK13538 14 RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP--DAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTA 91 (204)
T ss_pred EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEEcccchHHhhhheEEeCCccccCcCCcH
Confidence 4699999999999999999999999999999999997653 47999999987532 3355679999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
.||+.+....+. . ...+.++++++.++|.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 92 ~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~-----~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 92 LENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVP-----VRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred HHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCC-----hhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 999988654321 1 1234588999999998777665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
|+.++..+++.|++++++|+|||++||+++ ++.+.-++++++
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 999999999999998877899999999975 344433444443
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.71 Aligned_cols=206 Identities=27% Similarity=0.414 Sum_probs=174.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCH
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 262 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.+++. +|+|.++|.++..... ++.++|++|++.+++.+|+
T Consensus 13 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~---~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 13 FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPD---SGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 36999999999999999999999999999999999999886 8999999998765433 3579999999999989999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+.....+.. .. + ....++.+++.++|.+..++.+++
T Consensus 90 ~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 130 (237)
T TIGR00968 90 RDNIAFGLEIRKHP----------KA----------K--------------IKARVEELLELVQLEGLGDRYPNQ----- 130 (237)
T ss_pred HHHHHhHHHhcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhhCChhh-----
Confidence 99998764322110 00 0 011245678889998777877766
Q ss_pred CChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeE
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~i 422 (1389)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|+|++|++|++
T Consensus 131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i 209 (237)
T TIGR00968 131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKI 209 (237)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999998764467888887766 477899999999999999
Q ss_pred EEecChhHHH
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 v~~G~~~~~~ 432 (1389)
++.|+.+++.
T Consensus 210 ~~~~~~~~~~ 219 (237)
T TIGR00968 210 EQIGSPDEVY 219 (237)
T ss_pred EEecCHHHHH
Confidence 9999988774
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=323.01 Aligned_cols=216 Identities=24% Similarity=0.300 Sum_probs=173.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC--------cCceEEEecCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--------PQRTCAYISQHDL 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~--------~~~~~~yv~Q~d~ 255 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+...+|+|.++|.++.... .++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (262)
T PRK09984 17 HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFN 96 (262)
T ss_pred eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEccccc
Confidence 46999999999999999999999999999999999999875223699999999875321 1356999999999
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
+++.+||+||+.+....... ...+. ... ..+ +....++.+++.+||++..|+.+
T Consensus 97 ~~~~~tv~e~l~~~~~~~~~---------~~~~~--~~~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 97 LVNRLSVLENVLIGALGSTP---------FWRTC--FSW-FTR--------------EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccCCcHHHHHHhhhccccc---------chhhh--ccc-ccH--------------HHHHHHHHHHHHcCCHHHHhCCc
Confidence 99999999999875321000 00000 000 000 01123567889999988888888
Q ss_pred cCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
++ |||||||||+||+||+.+|++|+|||||+|||..++..+.+.|+++++..+.|+|++.|++ .++.+++|+|+
T Consensus 151 ~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~i~ 224 (262)
T PRK09984 151 ST-----LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCERIV 224 (262)
T ss_pred cc-----cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 76 9999999999999999999999999999999999999999999999865567777777665 46789999999
Q ss_pred EEcCCeEEEecChhHH
Q 000615 416 LLSEGQIVYQGPRDNV 431 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~ 431 (1389)
+|++|++++.|+++++
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998764
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=322.29 Aligned_cols=207 Identities=22% Similarity=0.257 Sum_probs=170.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCC--CCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDL--HHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~--~~~ 258 (1389)
+++|+|+|+++++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++|++|++. +++
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNP 102 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCC---CCEEEECCEECCCCchhhHhccEEEEecCchhhcCc
Confidence 46999999999999999999999999999999999999987 9999999998753221 246999999974 567
Q ss_pred CCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccccccC
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGD 337 (1389)
Q Consensus 259 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg~ 337 (1389)
.+||.|++.+..+.... .... +....++.+++.+||. +..++.+.+
T Consensus 103 ~~tv~~~l~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (267)
T PRK15112 103 RQRISQILDFPLRLNTD---------LEPE------------------------QREKQIIETLRQVGLLPDHASYYPHM 149 (267)
T ss_pred chhHHHHHHHHHHhccC---------CCHH------------------------HHHHHHHHHHHHcCCChHHHhcCchh
Confidence 88999999875432100 0000 0011356688999994 566776665
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++..++|++++|
T Consensus 150 -----LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l 223 (267)
T PRK15112 150 -----LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISDQVLVM 223 (267)
T ss_pred -----cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcCEEEEE
Confidence 9999999999999999999999999999999999999999999998765567777776655 5788899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+.+++.
T Consensus 224 ~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 224 HQGEVVERGSTADVL 238 (267)
T ss_pred ECCEEEecCCHHHHh
Confidence 999999999988764
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=312.35 Aligned_cols=201 Identities=23% Similarity=0.300 Sum_probs=170.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++..++ ++.+|+++|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.++
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV--ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CCeeEEECCEEc
Confidence 477888876432 24699999999999999999999999999999999997653 479999999876
Q ss_pred ChhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHH
Q 000615 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrq 1013 (1389)
.....++.++|++|++.+++.+|+.||+.+....+. .. ..+.++++++.++|.+..+..+ ..|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLV-----RQLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCCh-----hhCCHHHHH
Confidence 543345569999999989898999999988654321 11 2234678899999987777664 479999999
Q ss_pred HHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1014 Rl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
|++||++++.+|++|+|||||+|||+.++..+.+.|+++.++|+|||+++|+++ ++.+.+|+++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~ 211 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLE 211 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEe
Confidence 999999999999999999999999999999999999998888999999999986 6888999999886
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=323.11 Aligned_cols=205 Identities=27% Similarity=0.356 Sum_probs=168.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCC-C
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH-H 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~-~ 257 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.. +
T Consensus 14 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 14 EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ---KGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---ccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 35899999999999999999999999999999999999987 99999999987421 113579999999753 4
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
...|+.||+.+.....+.. .. + ....++.+++.+||++..++.+++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~----------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 136 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVP----------EA----------E--------------ITRRVDEALTLVDAQHFRHQPIQC 136 (271)
T ss_pred ccccHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCHhHhcCCchh
Confidence 4568999998753321110 00 0 011245678889998888887766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.+++|++++|
T Consensus 137 -----LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~-~~~~~~~~d~i~~l 209 (271)
T PRK13638 137 -----LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHD-IDLIYEISDAVYVL 209 (271)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999875 36777776655 45778899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+.+++.
T Consensus 210 ~~G~i~~~g~~~~~~ 224 (271)
T PRK13638 210 RQGQILTHGAPGEVF 224 (271)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999998764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=321.72 Aligned_cols=215 Identities=20% Similarity=0.273 Sum_probs=173.0
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 478888876542 2469999999999999999999999999999999999532 1 13479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++. |++||+.+...... .......++.+.++++.+++.+ ..+..
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAG--ERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 87532 2345679999999988875 99999987643221 1112233455788888888852 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999976 5778899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |++++.|+.
T Consensus 238 ~-G~i~~~~~~ 247 (268)
T PRK14248 238 N-GDLVEYDQT 247 (268)
T ss_pred C-CEEEEeCCH
Confidence 4 899998874
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=323.81 Aligned_cols=215 Identities=22% Similarity=0.320 Sum_probs=173.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1389)
.+.++|+++.++ ...+|+|+|++|++||+++|+||||||||||+++|+|... + .+.+|+|.++|
T Consensus 39 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g 105 (286)
T PRK14275 39 HVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDG 105 (286)
T ss_pred EEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECC
Confidence 578888876542 2359999999999999999999999999999999999632 1 02479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++. ||.||+.+....+.. .+....++.+.++++.+++. +..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 179 (286)
T PRK14275 106 EDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKN--- 179 (286)
T ss_pred EEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCC---
Confidence 86532 2345679999999988875 999999986533211 11223345678888888874 223333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|.
T Consensus 180 --~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L~ 255 (286)
T PRK14275 180 --ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFFY 255 (286)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999865 689999999986 5677899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |+++..|+.
T Consensus 256 ~-G~i~~~g~~ 265 (286)
T PRK14275 256 E-GVLVEHAPT 265 (286)
T ss_pred C-CEEEEeCCH
Confidence 5 899988874
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=318.61 Aligned_cols=219 Identities=21% Similarity=0.276 Sum_probs=172.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.++++|+++.+. ++.+|+|+|++|++|+++||+||||||||||+++|+|...+. +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 356777776442 246999999999999999999999999999999999975421 2369999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.+... ...++.++|++|++.+++. |++||+.+....+.. . ..+..++.++++++.+++.+....... ..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGT-T-AQSRLDEVVEKSLRQAALWDEVKDNLH-KSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCC-C-hhhHHHHHHHHHHHHhCCchhhhhHhh-CCcc
Confidence 86532 2346779999999988875 999999887543311 1 122234557778888887532111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcE
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~ 1085 (1389)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. +|+|||+++|+++ ++.+.+|++++|. +|+
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~-~G~ 223 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLL-TGD 223 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEe-CCe
Confidence 799999999999999999999999999999999999999999999985 5899999999976 5777889999997 588
Q ss_pred EEEecCC
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~g~~ 1092 (1389)
+++.|+.
T Consensus 224 i~~~~~~ 230 (251)
T PRK14249 224 LVEYGRT 230 (251)
T ss_pred EEEeCCH
Confidence 9988875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=314.44 Aligned_cols=200 Identities=29% Similarity=0.431 Sum_probs=161.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCC--CCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH--GEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lT 261 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.. .++.++|++|++.+. ..+|
T Consensus 12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~---~G~i~~~g~~~~~--~~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPT---SGSIRVFGKPLEK--ERKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCccHHH--HHhheEEeccccccccCCCCc
Confidence 46999999999999999999999999999999999999887 8999999987642 346799999998653 3489
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+....... .+. . ... .....++.+++.+||++..++.+++
T Consensus 87 v~e~l~~~~~~~~~--~~~-------------~-~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~---- 132 (213)
T cd03235 87 VRDVVLMGLYGHKG--LFR-------------R-LSK--------------ADKAKVDEALERVGLSELADRQIGE---- 132 (213)
T ss_pred HHHHHHhccccccc--ccc-------------C-CCH--------------HHHHHHHHHHHHcCCHHHHhCCccc----
Confidence 99999875321100 000 0 000 0012356688899998878888776
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|+|++|++|
T Consensus 133 -LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~- 208 (213)
T cd03235 133 -LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT- 208 (213)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-
Confidence 999999999999999999999999999999999999999999999876 467777776654 4788899999999886
Q ss_pred EEEec
Q 000615 422 IVYQG 426 (1389)
Q Consensus 422 iv~~G 426 (1389)
+++.|
T Consensus 209 ~~~~g 213 (213)
T cd03235 209 VVASG 213 (213)
T ss_pred EeecC
Confidence 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=321.79 Aligned_cols=209 Identities=25% Similarity=0.400 Sum_probs=171.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++.... .++.++|++|+..+++.+
T Consensus 15 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (255)
T PRK11231 15 KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQ---SGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI 91 (255)
T ss_pred EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCC---CcEEEECCEEhHHCCHHHHhhheEEecccCCCCCCc
Confidence 46999999999999999999999999999999999999886 899999999875432 235699999999888889
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||.||+.++..... ... +..+ . .....++.+++.+||++..++.+++
T Consensus 92 tv~~~i~~~~~~~~-----~~~----------~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~~~--- 138 (255)
T PRK11231 92 TVRELVAYGRSPWL-----SLW----------GRLS-A--------------EDNARVNQAMEQTRINHLADRRLTD--- 138 (255)
T ss_pred cHHHHHHhccchhh-----hhc----------cCCC-H--------------HHHHHHHHHHHHcCCHHHHcCCccc---
Confidence 99999988531000 000 0000 0 0012346678889998888888776
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
|||||||||+||+|++.+|++|+|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++.+++|++++|++|
T Consensus 139 --LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G 214 (255)
T PRK11231 139 --LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANG 214 (255)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECC
Confidence 999999999999999999999999999999999999999999999875 367777776655 4788999999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
++++.|+.+++.
T Consensus 215 ~i~~~~~~~~~~ 226 (255)
T PRK11231 215 HVMAQGTPEEVM 226 (255)
T ss_pred eEEEEcCHHHhc
Confidence 999999988763
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=319.10 Aligned_cols=215 Identities=25% Similarity=0.290 Sum_probs=173.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCc---eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g---~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|..... ..+|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 467888876542 346999999999999999999999999999999999964311 1379999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++. ||+||+.|....+.. ....+.++.+.++++.+++.+ ..+..
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 146 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDS--- 146 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcC---
Confidence 87532 2345679999999988875 999999987544321 122334456788899888753 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++.+ ++|||+++|++. ++.+.+|++++|.
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~ 222 (253)
T PRK14261 147 --ALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 689999999976 5667899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |+++..|+.
T Consensus 223 ~-G~i~~~g~~ 232 (253)
T PRK14261 223 L-GKLIEFDKT 232 (253)
T ss_pred C-CEEEEcCCH
Confidence 5 899988875
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=315.67 Aligned_cols=202 Identities=23% Similarity=0.394 Sum_probs=170.5
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc-CceEEEecCCCCCCCCCCHHHHHH
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1389)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E~l~ 267 (1389)
|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+||.||+.
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~ 93 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPA---SGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIG 93 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHh
Confidence 899999999999999999999999999999999887 8999999998765332 357999999999999999999998
Q ss_pred HhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCChhH
Q 000615 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1389)
Q Consensus 268 f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLSGGq 347 (1389)
+.... ... . .+ .....++.+++.+||++..|+.+.+ |||||
T Consensus 94 ~~~~~-~~~--~------~~-------------------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS~G~ 134 (232)
T PRK10771 94 LGLNP-GLK--L------NA-------------------------AQREKLHAIARQMGIEDLLARLPGQ-----LSGGQ 134 (232)
T ss_pred ccccc-ccC--C------CH-------------------------HHHHHHHHHHHHcCcHHHHhCCccc-----CCHHH
Confidence 75321 000 0 00 0012356688899999888888876 99999
Q ss_pred hhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEEecC
Q 000615 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1389)
Q Consensus 348 kqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~~G~ 427 (1389)
||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|+|++|++|++++.|+
T Consensus 135 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~g~ 213 (232)
T PRK10771 135 RQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWDGP 213 (232)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998765567888777665 47788999999999999999999
Q ss_pred hhHHHH
Q 000615 428 RDNVLE 433 (1389)
Q Consensus 428 ~~~~~~ 433 (1389)
.+++.+
T Consensus 214 ~~~~~~ 219 (232)
T PRK10771 214 TDELLS 219 (232)
T ss_pred HHHHHh
Confidence 887753
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=318.45 Aligned_cols=215 Identities=25% Similarity=0.336 Sum_probs=172.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g 930 (1389)
.+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|...+ . +.+|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 367888876542 24699999999999999999999999999999999997531 1 2579999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++ .||+||+.+....+.. ...+..++.++++++.+++.. ..+..
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 87531 234567999999988876 7999999876433211 112223456788999999842 22332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 457999999999999999999999999999999999999999999999864 799999999976 5677899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |+++..|+.
T Consensus 221 ~-G~i~~~~~~ 230 (251)
T PRK14251 221 N-GDLIEAGPT 230 (251)
T ss_pred C-CEEEEeCCH
Confidence 5 889888874
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=364.16 Aligned_cols=208 Identities=25% Similarity=0.415 Sum_probs=172.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++++||+.++|+|+||||||||+++|+|.++|+ +|+|.+||+++++... ++.++||+|++.+|+ .
T Consensus 470 ~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~---~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ 545 (694)
T TIGR01846 470 PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQ---HGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFS-R 545 (694)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEehhhCCHHHHHHhCeEEccCCeehh-h
Confidence 35899999999999999999999999999999999999997 8999999999987654 468999999998886 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++.. +.+.++..+++...+ .+..+ -.|++..||.+|+. +
T Consensus 546 ti~eNi~~~~~-------------------------~~~~~~i~~a~~~~~------l~~~i--~~lp~gl~t~i~~~-g 591 (694)
T TIGR01846 546 SIRDNIALCNP-------------------------GAPFEHVIHAAKLAG------AHDFI--SELPQGYNTEVGEK-G 591 (694)
T ss_pred hHHHHHhcCCC-------------------------CCCHHHHHHHHHHcC------hHHHH--HhCcCccCcEecCC-C
Confidence 99999987421 111112222222211 11122 23678899999874 6
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
+.||||||||++||||++.+|++++||||||+||+.++..+.+.|+++. .++|+|++.|++ +....+|+|++|++|
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~--~~~~~~d~ii~l~~G 667 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL--STVRACDRIIVLEKG 667 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh--HHHHhCCEEEEEeCC
Confidence 7799999999999999999999999999999999999999999999874 367888888876 456779999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++++|+++++++
T Consensus 668 ~i~~~g~~~~l~~ 680 (694)
T TIGR01846 668 QIAESGRHEELLA 680 (694)
T ss_pred EEEEeCCHHHHHH
Confidence 9999999999864
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-33 Score=317.32 Aligned_cols=206 Identities=23% Similarity=0.283 Sum_probs=166.6
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC-CceeEEEECCeeCCCCCc-CceEEEecCCCC--CCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL-RASGKITYCGHELNEFVP-QRTCAYISQHDL--HHGEM 260 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~-~~~G~I~~~G~~~~~~~~-~~~~~yv~Q~d~--~~~~l 260 (1389)
++|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++..... ++.++||+|++. +.+..
T Consensus 17 ~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 17 PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCccc
Confidence 58999999999999999999999999999999999998710 128999999998754322 257999999974 44567
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc---cccccccC
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI---CADTMVGD 337 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~---~~dt~vg~ 337 (1389)
|+.+++.+.++..+.. . ....++.+++.+||.+ ..++.+++
T Consensus 97 ~~~~~~~~~~~~~~~~---------------------~---------------~~~~~~~~l~~~~l~~~~~~~~~~~~~ 140 (254)
T PRK10418 97 TMHTHARETCLALGKP---------------------A---------------DDATLTAALEAVGLENAARVLKLYPFE 140 (254)
T ss_pred cHHHHHHHHHHHcCCC---------------------h---------------HHHHHHHHHHHcCCCChhhhhhcCCcc
Confidence 9999986643211100 0 0113456788899976 35666655
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|++++.|++ .++.+++|++++|
T Consensus 141 -----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l 214 (254)
T PRK10418 141 -----MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVM 214 (254)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999998765567777776654 4677899999999
Q ss_pred cCCeEEEecChhHHH
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 ~~G~iv~~G~~~~~~ 432 (1389)
++|++++.|+.+++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 215 SHGRIVEQGDVETLF 229 (254)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999998764
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=319.70 Aligned_cols=209 Identities=21% Similarity=0.339 Sum_probs=167.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCC--C---CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNE--F---VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~--~---~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ ...+|+|.++|+++.. . ..++.++|++|++.+
T Consensus 17 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (253)
T PRK14267 17 NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP 96 (253)
T ss_pred eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCcc
Confidence 35999999999999999999999999999999999998762 1238999999998752 1 123579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 332 (1389)
++.+||.||+.++....+... +..+ ....++.+++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (253)
T PRK14267 97 FPHLTIYDNVAIGVKLNGLVK------------------SKKE--------------LDERVEWALKKAALWDEVKDRLN 144 (253)
T ss_pred CCCCcHHHHHHHHHHhcCccC------------------CHHH--------------HHHHHHHHHHHcCCccchhhhhc
Confidence 999999999987643211000 0000 0112455677778742 345
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 145 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 216 (253)
T PRK14267 145 DYPSN-----LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSD 216 (253)
T ss_pred cChhh-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCC
Confidence 55544 999999999999999999999999999999999999999999999864 46777776655 47788999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|++++.|+++++.
T Consensus 217 ~i~~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 217 YVAFLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998764
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=320.59 Aligned_cols=206 Identities=20% Similarity=0.262 Sum_probs=168.8
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--c-eEEEEEEEcCccCCh-----hhhhheeeEeccCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISGYPKNQ-----ETFARVSGYCEQNDI 950 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~ 950 (1389)
++.+|+|+|+++++||++||+|+||||||||+++|+|...+ + +.+|+|.++|.++.. ...++.++|++|++.
T Consensus 20 ~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 20 NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 45799999999999999999999999999999999997542 1 247999999987532 234567999999988
Q ss_pred CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 951 HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 951 ~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
++ .+|+.||+.+....+. . ..+..+.++++++.++|.+..+...+ .....||||||||++|||||+.+|++|+|
T Consensus 100 ~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llll 173 (261)
T PRK14263 100 PF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLL 173 (261)
T ss_pred cc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 77 5999999988754332 1 12234568899999998643322221 12467999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe-------cCcEEEEecCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-------RGGRVIYAGPL 1092 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~-------~gG~~~~~g~~ 1092 (1389)
||||+|||+.++..+.+.|+++. +++|||+++|+++ ++.+.+|++++|. ++|++++.|+.
T Consensus 174 DEPtsgLD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~ 240 (261)
T PRK14263 174 DEPCSALDPIATRRVEELMVELK-KDYTIALVTHNMQ-QAIRVADTTAFFSVDISQGTRTGYLVEMGPT 240 (261)
T ss_pred eCCCccCCHHHHHHHHHHHHHHh-cCCeEEEEeCCHH-HHHHhCCEEEEEecccccccCCceEEEeCCH
Confidence 99999999999999999999986 4799999999986 5778899999996 46899999875
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-33 Score=352.00 Aligned_cols=209 Identities=25% Similarity=0.402 Sum_probs=170.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++.
T Consensus 331 ~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~- 406 (544)
T TIGR01842 331 KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPT---SGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG- 406 (544)
T ss_pred ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEehhhCCHHHHhhheEEecCCcccccc-
Confidence 35899999999999999999999999999999999999987 9999999999876543 4689999999998875
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++||+.++... .+.++..+++...+ .+..++ .|++..||.+|+ .+
T Consensus 407 ti~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~------~~~~i~--~l~~gl~t~~~~-~g 452 (544)
T TIGR01842 407 TVAENIARFGEN-------------------------ADPEKIIEAAKLAG------VHELIL--RLPDGYDTVIGP-GG 452 (544)
T ss_pred cHHHHHhccCCC-------------------------CCHHHHHHHHHHhC------hHHHHH--hCccccccccCC-Cc
Confidence 999999753210 00111111211111 122333 356778899986 46
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
+.||||||||++||||++++|++++|||||+|||+.++..+.+.|+++.. .++|+|++.|++. ..+.+|+|++|++|
T Consensus 453 ~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~~--~~~~~d~i~~l~~G 529 (544)
T TIGR01842 453 ATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRPS--LLGCVDKILVLQDG 529 (544)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCHH--HHHhCCEEEEEECC
Confidence 77999999999999999999999999999999999999999999998753 3678888888764 56789999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
++++.|+++++.+
T Consensus 530 ~i~~~g~~~~l~~ 542 (544)
T TIGR01842 530 RIARFGERDEVLA 542 (544)
T ss_pred EEEeeCCHHHHhh
Confidence 9999999988753
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-33 Score=317.99 Aligned_cols=207 Identities=19% Similarity=0.320 Sum_probs=164.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 25 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 104 (259)
T PRK14274 25 HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNP 104 (259)
T ss_pred eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCcc
Confidence 358999999999999999999999999999999999986 3222489999999987531 124579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 332 (1389)
++. ||+||+.|..+..+... +. + ....++.+++.+||.+ ..+
T Consensus 105 ~~~-tv~enl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~l~ 150 (259)
T PRK14274 105 FPQ-SIFDNVAYGPRIHGTKN---------KK----------K--------------LQEIVEKSLKDVALWDEVKDRLH 150 (259)
T ss_pred ccc-CHHHHHHhHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhhhh
Confidence 875 99999987643221000 00 0 0112445677778753 234
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 151 ~~~~-----~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 222 (259)
T PRK14274 151 TQAL-----SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSD 222 (259)
T ss_pred CCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCC
Confidence 5554 4999999999999999999999999999999999999999999999864 56777777665 47788999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
++++|++|+++.+|+++++.
T Consensus 223 ~i~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 223 QTAFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEEEECCEEEEECCHHHHh
Confidence 99999999999999998874
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=316.68 Aligned_cols=213 Identities=25% Similarity=0.305 Sum_probs=169.0
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCceeEEEECCeeCCCCCc----CceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 257 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.+ +|+ +|+|.++|+++..... +..++|++|++.++
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 13 KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVT---SGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC---cceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 46999999999999999999999999999999999995 555 8999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVG 336 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~vg 336 (1389)
+.+|++|++.+........ . .+ .. .+.+ +....++.+++.+||+ ...++.++
T Consensus 90 ~~~t~~~~~~~~~~~~~~~---------~-~~-----~~-~~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~ 142 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSA---------R-GE-----EP-LDLL-----------DFLKLLKAKLALLGMDEEFLNRSVN 142 (243)
T ss_pred CCcCHHHHHHHHHHHhhcc---------c-cc-----cc-ccHH-----------HHHHHHHHHHHHcCCchhhcccccc
Confidence 9999999998753321100 0 00 00 0000 0112356788899997 45666664
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhh-cCeEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL-FDDII 415 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~-~D~ii 415 (1389)
. .|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|++ .++... +|+++
T Consensus 143 ~----~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i~ 216 (243)
T TIGR01978 143 E----GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYVH 216 (243)
T ss_pred c----CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeEE
Confidence 1 3999999999999999999999999999999999999999999999875 467887777665 466677 79999
Q ss_pred EEcCCeEEEecChhHHH
Q 000615 416 LLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 217 VLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEeCCEEEEecCHHHhc
Confidence 99999999999988654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=327.27 Aligned_cols=214 Identities=17% Similarity=0.196 Sum_probs=169.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-CCceeEEEECCeeCCCCCc-------CceEEEecCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEFVP-------QRTCAYISQHDL 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~d~ 255 (1389)
..+|+|||++|++||+++|+|+||||||||+++|+|.+++. ...+|+|.++|+++..... ++.++||+|++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~ 99 (330)
T PRK15093 20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCcc
Confidence 56999999999999999999999999999999999998641 1238999999998865432 246999999975
Q ss_pred --CCCCCCHHHHHHHhhhccCC-cchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc---
Q 000615 256 --HHGEMTVRETLDFSGRCLGV-GTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI--- 329 (1389)
Q Consensus 256 --~~~~lTV~E~l~f~~~~~~~-~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~--- 329 (1389)
+.+.+||.+++.+....... +.. ..... +....+..+++.+||++
T Consensus 100 ~~l~p~~tv~~~l~~~~~~~~~~~~~----------------~~~~~-------------~~~~~~~~~L~~~gL~~~~~ 150 (330)
T PRK15093 100 SCLDPSERVGRQLMQNIPGWTYKGRW----------------WQRFG-------------WRKRRAIELLHRVGIKDHKD 150 (330)
T ss_pred hhcCccccHHHHHHHHHHhhhccccc----------------cccHH-------------HHHHHHHHHHHHCCCCChHH
Confidence 57889999999753211000 000 00000 00123567899999974
Q ss_pred cccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHh
Q 000615 330 CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD 409 (1389)
Q Consensus 330 ~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~ 409 (1389)
..++.+.+ |||||||||+||+||+.+|++|++||||+|||+.++.++.+.|+++.+..+.|+|++.| ....+.+
T Consensus 151 ~~~~~p~~-----LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itH-dl~~v~~ 224 (330)
T PRK15093 151 AMRSFPYE-----LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH-DLQMLSQ 224 (330)
T ss_pred HHhCCchh-----CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEEC-CHHHHHH
Confidence 34555554 99999999999999999999999999999999999999999999998755677666654 5568889
Q ss_pred hcCeEEEEcCCeEEEecChhHHH
Q 000615 410 LFDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 410 ~~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
++|+|++|++|+|++.|+.+++.
T Consensus 225 ~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 225 WADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred hCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999998874
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=322.81 Aligned_cols=214 Identities=24% Similarity=0.315 Sum_probs=172.4
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.++++|+++.+. ++.+|+|+||+|++||++||+||||||||||+++|+|...+ .+.+|+|.++|
T Consensus 39 ~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G 105 (285)
T PRK14254 39 VIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRG 105 (285)
T ss_pred eEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 578888876542 24699999999999999999999999999999999997531 12479999999
Q ss_pred ccCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+.. ....++.++|++|++.+++. ||.||+.+....+. ... ...+.++++++.+++.+ ..+..
T Consensus 106 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~--- 177 (285)
T PRK14254 106 KNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS--- 177 (285)
T ss_pred EEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC---
Confidence 8753 12456789999999888875 99999987654331 112 23456889999999853 23333
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..|||||||||+||++|+.+|+||||||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.+|+++++.
T Consensus 178 --~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~~tiii~tH~~~-~i~~~~dri~v~l 253 (285)
T PRK14254 178 --GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-EYTVVIVTHNMQ-QAARISDKTAVFL 253 (285)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHhhcCEEEEEe
Confidence 457999999999999999999999999999999999999999999999976 489999999976 5667899976543
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
++|+++..|+.
T Consensus 254 ~~G~i~~~g~~ 264 (285)
T PRK14254 254 TGGELVEFDDT 264 (285)
T ss_pred eCCEEEEeCCH
Confidence 35899988874
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=320.16 Aligned_cols=209 Identities=28% Similarity=0.415 Sum_probs=171.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
..+|+|+|+++++|++++|+||||||||||+++|+|.++++ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 14 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD---AGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCC---CCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 46999999999999999999999999999999999999887 8999999998765432 34699999998778889
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+||+.++..... .. ... +..+ ....++..++.+||.+..++.+++
T Consensus 91 tv~e~l~~~~~~~~---------~~------~~~-~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~--- 137 (256)
T TIGR03873 91 TVRDVVALGRIPHR---------SL------WAG-DSPH--------------DAAVVDRALARTELSHLADRDMST--- 137 (256)
T ss_pred CHHHHHHhcchhhh---------hh------ccC-CCHH--------------HHHHHHHHHHHcCcHhhhcCCccc---
Confidence 99999987521000 00 000 0000 011346678889998878888776
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+ .+.|+|++.|++ .++.+++|+|++|++|
T Consensus 138 --LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G 213 (256)
T TIGR03873 138 --LSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGG 213 (256)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999875 367777776665 4788999999999999
Q ss_pred eEEEecChhHHH
Q 000615 421 QIVYQGPRDNVL 432 (1389)
Q Consensus 421 ~iv~~G~~~~~~ 432 (1389)
+++..|+.+++.
T Consensus 214 ~i~~~g~~~~~~ 225 (256)
T TIGR03873 214 RVVAAGPPREVL 225 (256)
T ss_pred CEEEecCHHHhh
Confidence 999999988763
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=326.79 Aligned_cols=206 Identities=19% Similarity=0.313 Sum_probs=167.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCC----C----CcCceEEEecCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE----F----VPQRTCAYISQHDL 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~----~----~~~~~~~yv~Q~d~ 255 (1389)
..+|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++.. . ..++.++|++|++.
T Consensus 24 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~ 100 (289)
T PRK13645 24 FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE---TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPE 100 (289)
T ss_pred cceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCEEccccccccccHHHHhccEEEEEeCcc
Confidence 35999999999999999999999999999999999999887 8999999998742 1 12457999999973
Q ss_pred -CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-ccccc
Q 000615 256 -HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADT 333 (1389)
Q Consensus 256 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt 333 (1389)
.+...||+||+.|+....+.. .. + ....++.+++.++|+ +..++
T Consensus 101 ~~~~~~tv~enl~~~~~~~~~~----------~~----------~--------------~~~~~~~ll~~~~L~~~~~~~ 146 (289)
T PRK13645 101 YQLFQETIEKDIAFGPVNLGEN----------KQ----------E--------------AYKKVPELLKLVQLPEDYVKR 146 (289)
T ss_pred hhhhhhHHHHHHHHHHHHcCCC----------HH----------H--------------HHHHHHHHHHHcCCChhHhcC
Confidence 233469999998853321100 00 0 011245678889995 56777
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+..++|+|++.|++ .++.+++|+
T Consensus 147 ~~~~-----LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~d~ 220 (289)
T PRK13645 147 SPFE-----LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIADE 220 (289)
T ss_pred Chhh-----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCE
Confidence 7766 9999999999999999999999999999999999999999999998765567777776654 478899999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|++++.|+.+++.
T Consensus 221 i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 221 VIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred EEEEECCEEEEeCCHHHHh
Confidence 9999999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=320.63 Aligned_cols=224 Identities=25% Similarity=0.350 Sum_probs=177.2
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.++... ..+ +..++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+..
T Consensus 4 l~~~nl~~~~~~~~---~~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~sG~i~~~g~~~~ 77 (268)
T PRK10419 4 LNVSGLSHHYAHGG---LSG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES--PSQGNVSWRGEPLA 77 (268)
T ss_pred EEEeceEEEecCCc---ccc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEecc
Confidence 56777776543100 000 0013569999999999999999999999999999999999755 35799999998653
Q ss_pred h------hhhhheeeEeccCC--CCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCC
Q 000615 935 Q------ETFARVSGYCEQND--IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVS 1005 (1389)
Q Consensus 935 ~------~~~~~~~gyv~Q~~--~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~ 1005 (1389)
. ...++.++|++|++ .+.+..|+.|++.+..... ......+....++++++.+++. ...+.. +.
T Consensus 78 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~ 150 (268)
T PRK10419 78 KLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKR-----PP 150 (268)
T ss_pred ccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCC-----Cc
Confidence 2 12456799999997 3567899999987643211 1122344455689999999996 455554 45
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
.||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++.+.+|++++|. +|
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~-~G 228 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMD-NG 228 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEE-CC
Confidence 79999999999999999999999999999999999999999999998765 899999999976 5667899999997 58
Q ss_pred EEEEecCCC
Q 000615 1085 RVIYAGPLG 1093 (1389)
Q Consensus 1085 ~~~~~g~~~ 1093 (1389)
++++.|+..
T Consensus 229 ~i~~~g~~~ 237 (268)
T PRK10419 229 QIVETQPVG 237 (268)
T ss_pred EEeeeCChh
Confidence 999998864
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=307.66 Aligned_cols=178 Identities=25% Similarity=0.325 Sum_probs=150.2
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-----hhhhheeeEeccCCC-CCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDI-HSP 953 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~-~~~ 953 (1389)
+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++. ...
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP--QSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 4699999999999999999999999999999999997653 47999999987531 234567999999973 333
Q ss_pred CCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 954 ~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
..||+||+.+..... ....++..+.++++++.++|.+..++.+ ..||||||||++|||+|+.+|++|+||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 579999998865322 1233344556889999999988777763 57999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCcc
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1067 (1389)
|+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999864
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=350.41 Aligned_cols=208 Identities=22% Similarity=0.337 Sum_probs=172.6
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChh----hhhheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQE----TFARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~----~~~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|||+++++||++||+||||||||||+++|+|...+++.+|+|.++|.+.... ..++.+|||+|++.+++.+
T Consensus 14 ~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (500)
T TIGR02633 14 VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL 93 (500)
T ss_pred eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC
Confidence 469999999999999999999999999999999999765322479999999875421 1235699999999999999
Q ss_pred CHHHHHHHHHHhhcCC-CCcHHHHHHHHHHHHHHcCCcccc-cccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCC
Q 000615 956 TVYESLLYSAWLRLSS-DVDTKKRKMFVDEVMELVELKSLN-DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033 (1389)
Q Consensus 956 Tv~E~l~f~~~lr~~~-~~~~~~~~~~v~~~l~~l~L~~~~-~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEP 1033 (1389)
||.||+.+....+... ....++..++++++++.+++.+.. +.. +..|||||||||+||++|+.+|+|||||||
T Consensus 94 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgG~~qrv~iA~al~~~p~lllLDEP 168 (500)
T TIGR02633 94 SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP-----VGDYGGGQQQLVEIAKALNKQARLLILDEP 168 (500)
T ss_pred cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCc-----hhhCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 9999998764332111 112333445688999999997654 343 347999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1034 TSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1034 TsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
|+|||+.+...+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.|+..+
T Consensus 169 t~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 227 (500)
T TIGR02633 169 SSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRD-GQHVATKDMST 227 (500)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeC-CeEeeecCccc
Confidence 9999999999999999999888999999999976 57778999999985 78998887654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=317.41 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=164.1
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1389)
++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.++
T Consensus 27 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 106 (260)
T PRK10744 27 HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPF 106 (260)
T ss_pred EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCccC
Confidence 59999999999999999999999999999999999986 2112389999999987431 1245799999998888
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----ccccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~dt 333 (1389)
+ .||+||+.++........ .. + ....++.+++.+||. +..++
T Consensus 107 ~-~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 107 P-MSIYDNIAFGVRLFEKLS---------RA----------E--------------MDERVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred c-CcHHHHHhhhHhhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCChhhHHHHhc
Confidence 7 899999987643210000 00 0 011245677788874 33455
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+
T Consensus 153 ~~~~-----LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~ 224 (260)
T PRK10744 153 SGYS-----LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSDY 224 (260)
T ss_pred CCCC-----CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCE
Confidence 5544 999999999999999999999999999999999999999999999853 56777766654 477889999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
+++|++|+++..|+.+++.
T Consensus 225 i~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 225 TAFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988774
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=322.38 Aligned_cols=218 Identities=23% Similarity=0.395 Sum_probs=172.7
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ +++.+|+|+|++|++||++||+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 6 ~l~~~~l~~~~~------------~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR------------NGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR--LASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec------------CCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEh
Confidence 477888876542 12469999999999999999999999999999999999765 3479999999876
Q ss_pred ChhhhhheeeEeccCCCCC--CCCCHHHHHHHHHHhhcC-CCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHH
Q 000615 934 NQETFARVSGYCEQNDIHS--PYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE 1010 (1389)
Q Consensus 934 ~~~~~~~~~gyv~Q~~~~~--~~lTv~E~l~f~~~lr~~-~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgG 1010 (1389)
.....++.++|++|++.+. ...+++|++.+....... .........+.++++++.++|.+..++.+ ..||||
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgG 146 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQI-----GELSGG 146 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHH
Confidence 4322234699999997653 234788888653211000 01111223445788999999988777764 479999
Q ss_pred HHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1011 qrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||||++||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||+++|+++ ++.+.+|+++++ + |++++.|
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~-G~i~~~g 223 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K-GTVLASG 223 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C-CEEEeec
Confidence 999999999999999999999999999999999999999999877999999999976 577889998666 4 8999988
Q ss_pred CCC
Q 000615 1091 PLG 1093 (1389)
Q Consensus 1091 ~~~ 1093 (1389)
+..
T Consensus 224 ~~~ 226 (272)
T PRK15056 224 PTE 226 (272)
T ss_pred CHH
Confidence 764
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-34 Score=310.50 Aligned_cols=184 Identities=28% Similarity=0.336 Sum_probs=158.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
+.+|+|+|++|++||++||+|+||||||||+++|+|..++ .+|+|.++|.+... ..+++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (201)
T cd03231 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP--LAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSV 90 (201)
T ss_pred ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEECCEecccccHHhhhheEEeccccccCCCcCH
Confidence 4699999999999999999999999999999999997653 47999999987532 3456779999999988889999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
+||+.+.... . .++.++++++.+++.+..++. +..||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 91 LENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRP-----VAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred HHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCc-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999875311 1 234578999999998777665 3579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
|+.++..+++.|+++.++|+|||++||++. +....+++++++
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~ 198 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL 198 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence 999999999999998877999999999975 677788888776
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=316.22 Aligned_cols=215 Identities=23% Similarity=0.317 Sum_probs=171.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--Cc-eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GG-YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~g-~~~G~i~i~g 930 (1389)
.+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|... +. ..+|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 5 IITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred eEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 467888876542 2469999999999999999999999999999999999642 11 2479999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccC
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~ 1001 (1389)
.+... ...++.++|++|++.+++ .|++||+.+....+.. ...+..++.+.+.++.+++.. ..+..
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~--- 145 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES--- 145 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC---
Confidence 87531 234567999999998887 6999999886543321 112222345677888887642 22222
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||+++ ++.+.+|++++|+
T Consensus 146 --~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14255 146 --ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 589999999986 5778899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+|+++..|+.
T Consensus 222 -~G~i~~~~~~ 231 (252)
T PRK14255 222 -TGNLIEFADT 231 (252)
T ss_pred -CCEEEEeCCH
Confidence 4899888864
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=313.48 Aligned_cols=195 Identities=25% Similarity=0.361 Sum_probs=162.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHHG 258 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~~ 258 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++... ..++.++|++|++.+++
T Consensus 13 ~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 13 FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPD---SGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 46999999999999999999999999999999999999887 99999999987421 12467999999999999
Q ss_pred CCCHHHHHHHhhh-ccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 259 EMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 259 ~lTV~E~l~f~~~-~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
.+||+||+.++.. .++.. .. +....++.+++.+||++..++.+.+
T Consensus 90 ~~t~~e~l~~~~~~~~~~~----------~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 135 (213)
T cd03262 90 HLTVLENITLAPIKVKGMS----------KA------------------------EAEERALELLEKVGLADKADAYPAQ 135 (213)
T ss_pred CCcHHHHHHhHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCHhHhhhCccc
Confidence 9999999987532 11000 00 0011345678889998878888766
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|+ ..++.+++|+|++|
T Consensus 136 -----LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~-~~~~~~~~d~i~~l 208 (213)
T cd03262 136 -----LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHE-MGFAREVADRVIFM 208 (213)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCC-HHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999876 46777776655 45788899999999
Q ss_pred cCCeE
Q 000615 418 SEGQI 422 (1389)
Q Consensus 418 ~~G~i 422 (1389)
++|++
T Consensus 209 ~~g~i 213 (213)
T cd03262 209 DDGRI 213 (213)
T ss_pred eCCcC
Confidence 99974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=316.79 Aligned_cols=197 Identities=26% Similarity=0.368 Sum_probs=167.8
Q ss_pred eeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhhheeeEeccCCCCCCCCCHH
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 882 iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lTv~ 958 (1389)
+|+|||+++++||+++|+|+||||||||+++|+|... .+|+|.++|.+... ...++.++|++|++.+++.+|+.
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~---~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP---GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999999999999999999999999763 27999999987532 23445689999998888889999
Q ss_pred HHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhh-------CCCCceee
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1031 (1389)
Q Consensus 959 E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~-------~p~illLD 1031 (1389)
||+.+.... ....++..+.++++++.++|.+..+.. +..||||||||++||++|+. +|++|+||
T Consensus 88 ~nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllD 158 (248)
T PRK03695 88 QYLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRS-----VNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLD 158 (248)
T ss_pred HHHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCC-----cccCCHHHHHHHHHHHHHhccccccCCCCCEEEEc
Confidence 999875321 112233345688999999998776665 35799999999999999997 67999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1032 EPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||+|||+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|.+ |++++.|+.
T Consensus 159 EPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~-G~i~~~g~~ 217 (248)
T PRK03695 159 EPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQ-GKLLASGRR 217 (248)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCH
Confidence 999999999999999999999877999999999976 57788999999985 899998875
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=319.83 Aligned_cols=215 Identities=20% Similarity=0.269 Sum_probs=173.3
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--c-eEEEEEEEc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKIS 929 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~ 929 (1389)
..+.++|+++.++ ++.+|+|||++|++||+++|+|+||||||||+++|+|.... + +.+|+|.++
T Consensus 19 ~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 85 (274)
T PRK14265 19 SVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYR 85 (274)
T ss_pred ceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEEC
Confidence 3578888887542 24699999999999999999999999999999999996431 1 247999999
Q ss_pred CccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----ccccccc
Q 000615 930 GYPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVG 1000 (1389)
Q Consensus 930 g~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g 1000 (1389)
|.+... ..+++.++|++|++.+++. ||.||+.+....+. .. ...++.+++.++.+++.. ..+..
T Consensus 86 g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 158 (274)
T PRK14265 86 DRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEVKDKLKEK-- 158 (274)
T ss_pred CEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhhHHHhcCC--
Confidence 987531 2346779999999888775 99999987643321 11 122344677888888742 22332
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEE
Q 000615 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1001 ~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l 1080 (1389)
+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|
T Consensus 159 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 233 (274)
T PRK14265 159 ---GTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWTAFF 233 (274)
T ss_pred ---cccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 457999999999999999999999999999999999999999999999865 799999999986 577889999999
Q ss_pred e--------cCcEEEEecCC
Q 000615 1081 K--------RGGRVIYAGPL 1092 (1389)
Q Consensus 1081 ~--------~gG~~~~~g~~ 1092 (1389)
+ +.|++++.|+.
T Consensus 234 ~~~~~~~~~~~G~~~~~g~~ 253 (274)
T PRK14265 234 NTEIDEYGKRRGKLVEFSPT 253 (274)
T ss_pred ecccccccccCceEEEeCCH
Confidence 7 25899999986
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=355.74 Aligned_cols=209 Identities=25% Similarity=0.404 Sum_probs=171.5
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|+++++|+.++|+|+||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+|+ .
T Consensus 345 ~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~---~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~ 420 (571)
T TIGR02203 345 RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPD---SGQILLDGHDLADYTLASLRRQVALVSQDVVLFN-D 420 (571)
T ss_pred CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCeEEECCEeHHhcCHHHHHhhceEEccCccccc-c
Confidence 35899999999999999999999999999999999999997 8999999999876653 467999999998885 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++... +.+.++..+++...+ .+..+ -.|++..||.+|+. +
T Consensus 421 Ti~~Ni~~~~~~------------------------~~~~~~i~~~l~~~~------l~~~i--~~lp~gldt~i~~~-g 467 (571)
T TIGR02203 421 TIANNIAYGRTE------------------------QADRAEIERALAAAY------AQDFV--DKLPLGLDTPIGEN-G 467 (571)
T ss_pred cHHHHHhcCCCC------------------------CCCHHHHHHHHHHcC------hHHHH--HhCcCcccceecCC-C
Confidence 999999875210 011111112211111 11111 23677899999974 6
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
+.||||||||++||||++.+|+|++||||||+||+.++..+.+.|++..+ ++|+|+..|++ +..+.||+|++|++|
T Consensus 468 ~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~--~~tiIiitH~~--~~~~~~D~ii~l~~g 543 (571)
T TIGR02203 468 VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ--GRTTLVIAHRL--STIEKADRIVVMDDG 543 (571)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC--CCEEEEEehhh--HHHHhCCEEEEEeCC
Confidence 77999999999999999999999999999999999999999999998753 67888888876 678899999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++..|+++++.+
T Consensus 544 ~i~~~g~~~~l~~ 556 (571)
T TIGR02203 544 RIVERGTHNELLA 556 (571)
T ss_pred EEEeeCCHHHHHH
Confidence 9999999999864
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=309.77 Aligned_cols=215 Identities=23% Similarity=0.308 Sum_probs=172.8
Q ss_pred cceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC-C-CCCceeEEEECCeeCCCCCc-------CceEEEecCC
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG-K-DLRASGKITYCGHELNEFVP-------QRTCAYISQH 253 (1389)
Q Consensus 183 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~-~-~~~~~G~I~~~G~~~~~~~~-------~~~~~yv~Q~ 253 (1389)
..++++||||++++||+++|+|.|||||||+.++|.|+++ + ....+|+|.++|.++-.... .+.++||+|+
T Consensus 17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 4679999999999999999999999999999999999998 4 34567999999998755442 2579999999
Q ss_pred C--CCCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccc
Q 000615 254 D--LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICA 331 (1389)
Q Consensus 254 d--~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~ 331 (1389)
+ .+.|.+||.+.+.-..+...... . ..+....+..+|+.+||++-.
T Consensus 97 p~~sLnPv~~Ig~Qi~E~l~~h~~~~--------~------------------------~~ea~~~a~~~L~~Vgi~~~~ 144 (316)
T COG0444 97 PMTSLNPVMTIGDQIAEVLRLHGKGL--------S------------------------KKEAKERAIELLELVGIPDPE 144 (316)
T ss_pred chhhcCChhhHHHHHHHHHHHhhcch--------h------------------------hHHHHHHHHHHHHHcCCCCHH
Confidence 5 67888999998865433211000 0 011223456788999998532
Q ss_pred cccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhc
Q 000615 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1389)
Q Consensus 332 dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 411 (1389)
. +-+.+...|||||||||.||.||+.+|++|+.||||++||..++.+|++.|+++.++.+.+ ++.++|...-+.++|
T Consensus 145 ~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~a-iilITHDl~vva~~a 221 (316)
T COG0444 145 R--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA-LILITHDLGVVAEIA 221 (316)
T ss_pred H--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCE-EEEEeCCHHHHHHhc
Confidence 1 1223445599999999999999999999999999999999999999999999999865555 455566777899999
Q ss_pred CeEEEEcCCeEEEecChhHHH
Q 000615 412 DDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~ 432 (1389)
|+|+||..|+||+.|+.+++.
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999874
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=350.29 Aligned_cols=212 Identities=21% Similarity=0.322 Sum_probs=179.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP--DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC--CceEEEECCEEC
Confidence 367888876542 34699999999999999999999999999999999997653 479999999875
Q ss_pred Ch---hhh-hheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQ---ETF-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~---~~~-~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.. ... ++.+||++|++.+++.+||+|++.|.... .++.++.++++++.++|.+..+..+ ..|||
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 143 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSA-----GSLEV 143 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCCh-----hhCCH
Confidence 32 122 24589999999999999999999875311 1233456889999999988777764 47999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||||+||++|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++.+.||++++|.+ |++++.
T Consensus 144 G~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (510)
T PRK15439 144 ADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD-GTIALS 221 (510)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEe
Confidence 9999999999999999999999999999999999999999999888999999999976 56788999999985 899999
Q ss_pred cCCCc
Q 000615 1090 GPLGH 1094 (1389)
Q Consensus 1090 g~~~~ 1094 (1389)
|+..+
T Consensus 222 g~~~~ 226 (510)
T PRK15439 222 GKTAD 226 (510)
T ss_pred cChHH
Confidence 88653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=319.11 Aligned_cols=208 Identities=20% Similarity=0.308 Sum_probs=165.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.+++. ...+|+|+++|+++... ..++.++|++|++.+
T Consensus 32 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 32 KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 35999999999999999999999999999999999998641 11389999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 332 (1389)
++. ||.||+.|+....+... .+ .+ ....++.+++.+||.+ ..+
T Consensus 112 ~~~-tv~enl~~~~~~~~~~~--------~~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 158 (267)
T PRK14235 112 FPK-SIYENVAYGPRIHGLAR--------SK----------AE--------------LDEIVETSLRKAGLWEEVKDRLH 158 (267)
T ss_pred CCC-cHHHHHHHHHHhccccc--------ch----------HH--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 874 99999988643221100 00 00 0112456788888864 234
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 159 ~~~~~-----LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d 230 (267)
T PRK14235 159 EPGTG-----LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQ 230 (267)
T ss_pred CCccc-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCC
Confidence 55544 999999999999999999999999999999999999999999999864 56777766654 57788999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
++++|++|+++.+|+.+++.
T Consensus 231 ~v~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 231 RTAFFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=309.43 Aligned_cols=199 Identities=22% Similarity=0.287 Sum_probs=166.1
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-cCceEEEecCCCCCCCCCCHHH
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-PQRTCAYISQHDLHHGEMTVRE 264 (1389)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 264 (1389)
+++|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++.... .++.++|++|++.+++.+|++|
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~e 89 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPA---SGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQ 89 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEcccCChhccceEEEeccCccCCCCcHHH
Confidence 467999999999999999999999999999999999987 999999999875432 2467999999999999999999
Q ss_pred HHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccCCC
Q 000615 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1389)
Q Consensus 265 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rGLS 344 (1389)
|+.+...... . ... .....++.+++.+||++..++.+.+ ||
T Consensus 90 n~~~~~~~~~-~-------------------~~~--------------~~~~~~~~~l~~~~l~~~~~~~~~~-----LS 130 (213)
T TIGR01277 90 NIGLGLHPGL-K-------------------LNA--------------EQQEKVVDAAQQVGIADYLDRLPEQ-----LS 130 (213)
T ss_pred HHHhHhhccC-C-------------------ccH--------------HHHHHHHHHHHHcCcHHHhhCCccc-----CC
Confidence 9986432100 0 000 0012345678899998888888766 99
Q ss_pred hhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCeEEE
Q 000615 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1389)
Q Consensus 345 GGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~iv~ 424 (1389)
|||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.+++|++++|++|+++.
T Consensus 131 ~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~ 209 (213)
T TIGR01277 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKV 209 (213)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEE
Confidence 99999999999999999999999999999999999999999998765467777766654 57788999999999999998
Q ss_pred ecC
Q 000615 425 QGP 427 (1389)
Q Consensus 425 ~G~ 427 (1389)
.|.
T Consensus 210 ~~~ 212 (213)
T TIGR01277 210 VSD 212 (213)
T ss_pred ecC
Confidence 875
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=352.80 Aligned_cols=208 Identities=25% Similarity=0.357 Sum_probs=170.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
.++|+|+|++++||+.++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+|+ .
T Consensus 328 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ 403 (569)
T PRK10789 328 HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVS---EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFS-D 403 (569)
T ss_pred CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCC---CCEEEECCEEHhhCCHHHHHhheEEEccCCeecc-c
Confidence 35899999999999999999999999999999999999997 9999999999876543 467999999998886 5
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++... .+.++..+++...+. .+ ....|++..||.+|+. +
T Consensus 404 ti~~Ni~~~~~~-------------------------~~~~~~~~~~~~~~l-----~~---~i~~lp~gl~t~~~~~-g 449 (569)
T PRK10789 404 TVANNIALGRPD-------------------------ATQQEIEHVARLASV-----HD---DILRLPQGYDTEVGER-G 449 (569)
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHcCC-----HH---HHHhCcCcccceecCC-C
Confidence 999999875211 000111111111110 01 1235788899999873 5
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
..||||||||++||||++.+|++++|||||+|||+.++..+.+.|+++. .++|+|++.|++ +..+.+|+|++|++|
T Consensus 450 ~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~--~~~~~~d~i~~l~~G 525 (569)
T PRK10789 450 VMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL--SALTEASEILVMQHG 525 (569)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--hHHHcCCEEEEEeCC
Confidence 6799999999999999999999999999999999999999999999875 368888888876 456789999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++.+|+++++.+
T Consensus 526 ~i~~~g~~~~l~~ 538 (569)
T PRK10789 526 HIAQRGNHDQLAQ 538 (569)
T ss_pred EEEEecCHHHHHH
Confidence 9999999998864
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=319.60 Aligned_cols=215 Identities=22% Similarity=0.240 Sum_probs=171.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g 930 (1389)
.++++|+++.++ ++.+|+|+|++|++||++||+|+||||||||+++|+|... + .+.+|+|.++|
T Consensus 24 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g 90 (271)
T PRK14238 24 VFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD 90 (271)
T ss_pred EEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECC
Confidence 478889887542 2359999999999999999999999999999999999653 1 13579999999
Q ss_pred ccCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc----ccccccccC
Q 000615 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK----SLNDSMVGL 1001 (1389)
Q Consensus 931 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~----~~~~~~~g~ 1001 (1389)
.+.. ...+++.++|++|++.+++ .||+||+.+....+. ....+..++.+.++++.+++. +..+..
T Consensus 91 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--- 164 (271)
T PRK14238 91 QNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIHG--IKDKKTLDEIVEKSLRGAAIWDELKDRLHDN--- 164 (271)
T ss_pred EEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchHHHHHhcC---
Confidence 8753 1234667999999998877 499999988653321 111222344567777777543 222332
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
+..||||||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++.+ ++|||+++|+++ ++.+.+|++++|+
T Consensus 165 --~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l~ 240 (271)
T PRK14238 165 --AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFFL 240 (271)
T ss_pred --cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEEE
Confidence 457999999999999999999999999999999999999999999999875 799999999976 5677899999998
Q ss_pred cCcEEEEecCC
Q 000615 1082 RGGRVIYAGPL 1092 (1389)
Q Consensus 1082 ~gG~~~~~g~~ 1092 (1389)
+ |++++.|+.
T Consensus 241 ~-G~i~~~g~~ 250 (271)
T PRK14238 241 N-GYVNEYDDT 250 (271)
T ss_pred C-CEEEEeCCH
Confidence 5 899988874
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=313.02 Aligned_cols=209 Identities=22% Similarity=0.363 Sum_probs=167.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|||++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.
T Consensus 7 ~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~ 71 (225)
T PRK10247 7 LLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS--PTSGTLLFEGEDI 71 (225)
T ss_pred eEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC--CCCCeEEECCEEc
Confidence 477888876542 3469999999999999999999999999999999999754 3479999999865
Q ss_pred Ch---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCH
Q 000615 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSg 1009 (1389)
.. ...++.++|++|++.+++ .|++||+.+....+.. .. ..+.++++++.+++. ...+.. +..|||
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~ 140 (225)
T PRK10247 72 STLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKN-----IAELSG 140 (225)
T ss_pred CcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCC-----cccCCH
Confidence 32 234567999999988877 4999999875433221 11 124578899999995 355554 457999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEE
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~ 1088 (1389)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|+++ ++ +.+|++++|.+.+..+.
T Consensus 141 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~l~~~~~~~~ 218 (225)
T PRK10247 141 GEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVITLQPHAGEMQ 218 (225)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEEEecccchHh
Confidence 9999999999999999999999999999999999999999998754 899999999976 34 57999999964333333
Q ss_pred ec
Q 000615 1089 AG 1090 (1389)
Q Consensus 1089 ~g 1090 (1389)
.|
T Consensus 219 ~~ 220 (225)
T PRK10247 219 EA 220 (225)
T ss_pred hh
Confidence 33
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=349.61 Aligned_cols=207 Identities=26% Similarity=0.335 Sum_probs=173.8
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCCCCCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~~~~ 954 (1389)
++.+|+|||+++++||++||+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 10 ~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 87 (491)
T PRK10982 10 GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK--DSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQ 87 (491)
T ss_pred CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC--CceEEEECCEECCCCCHHHHHhCCEEEEecccccccC
Confidence 35699999999999999999999999999999999997653 47999999987532 2235679999999988899
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
+||+||+.+............++..+.++++++.+++.+..+..+ ..|||||||||+||++|+.+|++|||||||
T Consensus 88 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt 162 (491)
T PRK10982 88 RSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPT 162 (491)
T ss_pred CCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCC
Confidence 999999987532111111123334456889999999987777663 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1035 SGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
+|||+.++..+.+.|+++++.|+|||++||+++ ++.+.||++++|.+ |+++..|+...
T Consensus 163 ~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~-G~i~~~~~~~~ 220 (491)
T PRK10982 163 SSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRD-GQWIATQPLAG 220 (491)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEeecChhh
Confidence 999999999999999999888999999999976 57778999999985 89999988654
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=321.91 Aligned_cols=211 Identities=22% Similarity=0.303 Sum_probs=172.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++. +...+|+|||+.|++||+++|+|+||||||||+++|+|... .+|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~---~~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC---CCcEEEECCEEh
Confidence 3678888876531 12359999999999999999999999999999999999764 369999999875
Q ss_pred Ch---hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccC------CCC
Q 000615 934 NQ---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL------PGV 1004 (1389)
Q Consensus 934 ~~---~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~------~~~ 1004 (1389)
.. ..+++.++||+|++.+++. |++||+.... ... ++.++++++.++|.+..+...+. ++.
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~----~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWS----DEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCC----HHHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 32 3456789999999998874 9999995321 111 23467888999998766554321 123
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
..||||||||++|||||+.+|+||+|||||+|||+.+...+++.|++.. .++|||+++|+++ ....||++++|. +|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~--~i~~~dri~vl~-~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE--AMLECQRFLVIE-EN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH--HHHhCCEEEEec-CC
Confidence 5699999999999999999999999999999999999999999999875 4899999999975 345699999997 48
Q ss_pred EEEEecCCC
Q 000615 1085 RVIYAGPLG 1093 (1389)
Q Consensus 1085 ~~~~~g~~~ 1093 (1389)
++++.|++.
T Consensus 213 ~i~~~g~~~ 221 (275)
T cd03289 213 KVRQYDSIQ 221 (275)
T ss_pred eEeecCCHH
Confidence 999999864
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=348.89 Aligned_cols=216 Identities=29% Similarity=0.353 Sum_probs=178.2
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|||+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p--~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP--DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCCEEEECCEEC
Confidence 367778776542 34699999999999999999999999999999999997653 479999999875
Q ss_pred Ch----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCH
Q 000615 934 NQ----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLST 1009 (1389)
Q Consensus 934 ~~----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSg 1009 (1389)
.. ...++.+||++|++.+++.+||.||+.+....+........+..+.++++++.++|.+..+.. +..|||
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LSg 143 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTP-----LKYLSI 143 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCc-----hhhCCH
Confidence 32 224567999999999999999999998853211111112334456788999999998766665 357999
Q ss_pred HHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEe
Q 000615 1010 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYA 1089 (1389)
Q Consensus 1010 GqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~ 1089 (1389)
||||||+||++|+.+|+||||||||+|||+.++..+.+.|++++++|+|||++||+++ ++...||++++|.+ |+++..
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~-G~i~~~ 221 (501)
T PRK11288 144 GQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD-GRYVAT 221 (501)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEee
Confidence 9999999999999999999999999999999999999999999878999999999986 57788999999985 788776
Q ss_pred cC
Q 000615 1090 GP 1091 (1389)
Q Consensus 1090 g~ 1091 (1389)
++
T Consensus 222 ~~ 223 (501)
T PRK11288 222 FD 223 (501)
T ss_pred cC
Confidence 65
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=318.92 Aligned_cols=196 Identities=23% Similarity=0.400 Sum_probs=154.4
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---hhhhhheeeEeccCCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
+.+|+|+|+++++||+++|+|+||||||||+++|+|...+ .+|+|.++|.+.. ...+++.++|++|++.+++ .|
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~--~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 91 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP--ENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-RS 91 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-ch
Confidence 4599999999999999999999999999999999997653 4799999998653 2345677999999987764 69
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCce
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1029 (1389)
|.||+.+... ........ ...++.++.+ ++....+.. +..|||||||||+|||+|+.+|++|+
T Consensus 92 v~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~LSgG~~qrv~laral~~~p~lll 161 (237)
T cd03252 92 IRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAGLSGGQRQRIAIARALIHNPRILI 161 (237)
T ss_pred HHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCcCCHHHHHHHHHHHHHhhCCCEEE
Confidence 9999976421 11111100 1122333333 333322332 46899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1030 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||||+|||+.++..+.+.|++++ +|+|||+++|+++ ++ +.+|++++|.+ |++++.|+.
T Consensus 162 lDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~sH~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (237)
T cd03252 162 FDEATSALDYESEHAIMRNMHDIC-AGRTVIIIAHRLS-TV-KNADRIIVMEK-GRIVEQGSH 220 (237)
T ss_pred EeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-HhCCEEEEEEC-CEEEEEcCH
Confidence 999999999999999999999986 4899999999986 34 56999999985 899998874
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=314.32 Aligned_cols=208 Identities=19% Similarity=0.282 Sum_probs=165.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC---cCceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV---PQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 260 (1389)
+.+|+|+|+++++|++++|+||||||||||+++|+|.+++....+|+|.++|+++.+.. .++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~ 93 (246)
T PRK14269 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K 93 (246)
T ss_pred EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999997531123899999999886542 2457999999998887 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccccccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CADTMVG 336 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~dt~vg 336 (1389)
||+||+.++...++... +... ....++.+++.+||.. ..+..+
T Consensus 94 tv~eni~~~~~~~~~~~------------------~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~~~- 140 (246)
T PRK14269 94 SIYENISYAPKLHGMIK------------------NKDE--------------EEALVVDCLQKVGLFEEVKDKLKQNA- 140 (246)
T ss_pred cHHHHhhhHHhhcCccc------------------ChHH--------------HHHHHHHHHHHcCCChhhhHHhcCCc-
Confidence 99999988643221000 0000 0112456788888853 233433
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
+.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|++++.|++ .++.+++|+|++
T Consensus 141 ----~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~ 213 (246)
T PRK14269 141 ----LALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAF 213 (246)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEE
Confidence 45999999999999999999999999999999999999999999999854 66777766654 578889999999
Q ss_pred EcCCeEEEecChhHHH
Q 000615 417 LSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1389)
|++|++++.|+.+++.
T Consensus 214 l~~G~i~~~g~~~~~~ 229 (246)
T PRK14269 214 FHLGELIEFGESKEFF 229 (246)
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999988764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=315.37 Aligned_cols=220 Identities=24% Similarity=0.303 Sum_probs=173.3
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ ++.+|+|||+++++||++||+|+||||||||+++|+|.....+.+|+|.++|.+.
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 367888876542 2469999999999999999999999999999999999621113579999999875
Q ss_pred Ch---hhhhh-eeeEeccCCCCCCCCCHHHHHHHHHHhhcC----CCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCC
Q 000615 934 NQ---ETFAR-VSGYCEQNDIHSPYVTVYESLLYSAWLRLS----SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGV 1004 (1389)
Q Consensus 934 ~~---~~~~~-~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~----~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~ 1004 (1389)
.. ...++ .++|++|++.+++.+|+.|++.+....... .+....+..+.+.++++.+++. ...+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 42 12222 478999999999999999998775432110 1111223345678899999996 35555432
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hCeEEEEecC
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRG 1083 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~g 1083 (1389)
..|||||||||+||++|+.+|+||+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|. +
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~d~i~~l~-~ 227 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKPDYVHVMQ-N 227 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhCCEEEEEe-C
Confidence 259999999999999999999999999999999999999999999999877999999999975 34444 79999997 5
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 228 G~i~~~~~~ 236 (252)
T CHL00131 228 GKIIKTGDA 236 (252)
T ss_pred CEEEEecCh
Confidence 899999875
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-34 Score=359.94 Aligned_cols=211 Identities=28% Similarity=0.449 Sum_probs=176.9
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|++|.++. ++.+|+|+|++++|||.+||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~--~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP--TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC--CCCeEEECCEe
Confidence 45899999987642 35699999999999999999999999999999999997663 47999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-------cccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-------LNDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-------~~~~~~g~~ 1002 (1389)
+. ...+|+.++||+|++.++. -||+||+.++. .+.+++ .++++++..++.+ -.|+.+|.
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~-----~~at~e----ei~~a~k~a~~~d~I~~lp~g~dt~vge- 461 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGR-----PDATDE----EIEEALKLANAHEFIANLPDGYDTIVGE- 461 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCC-----CCCCHH----HHHHHHHHhChHHHHHhCcccccceecC-
Confidence 54 4678899999999999988 89999999863 122332 3455555544333 35778874
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
+...||||||||++||||++++|+||+||||||+||+.++..|++.++++. +++|+++++|+++ ....+|++++|++
T Consensus 462 ~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRls--ti~~aD~IiVl~~ 538 (567)
T COG1132 462 RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLS--TIKNADRIIVLDN 538 (567)
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHh--HHHhCCEEEEEEC
Confidence 345799999999999999999999999999999999999999999999887 5789999999985 4566999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 539 -G~i~e~G~h 547 (567)
T COG1132 539 -GRIVERGTH 547 (567)
T ss_pred -CEEEEecCH
Confidence 889999985
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=349.47 Aligned_cols=212 Identities=27% Similarity=0.425 Sum_probs=175.7
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++++|++|.++. +++.+|+|+|++|+|||.+||+|+||||||||+++|+|...+ .+|+|.+||.+
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p--~~G~I~idg~~ 520 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP--QHGQVLVDGVD 520 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEe
Confidence 46899999987641 124599999999999999999999999999999999997653 47999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
+. ...+++.++||+|++.+++ .|++||+.+.. .+.+. +.+.++++..++.+. .|+.+|..
T Consensus 521 i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~-----~~~~~----~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~ 590 (694)
T TIGR01846 521 LAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN-----PGAPF----EHVIHAAKLAGAHDFISELPQGYNTEVGEK 590 (694)
T ss_pred hhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC-----CCCCH----HHHHHHHHHcChHHHHHhCcCccCcEecCC
Confidence 64 3567888999999988876 59999997642 12222 335667777776543 35555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||++|||||+++|+||+||||||+||+.++..+++.|+++. .++|+|++||+++ ....+|++++|++
T Consensus 591 -g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~ii~l~~ 666 (694)
T TIGR01846 591 -GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLS--TVRACDRIIVLEK 666 (694)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChH--HHHhCCEEEEEeC
Confidence 45799999999999999999999999999999999999999999999985 5899999999975 4567999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 667 -G~i~~~g~~ 675 (694)
T TIGR01846 667 -GQIAESGRH 675 (694)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=305.23 Aligned_cols=197 Identities=27% Similarity=0.429 Sum_probs=171.2
Q ss_pred eeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-------cCceEEEecCCCCCCCCC
Q 000615 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 188 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~l 260 (1389)
=++++..+.-.+|||-|+||||||||+|+|+|+..|+ +|.|.+||..+.+.. .+|.+|||+|+..+||++
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPd---eG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~ 91 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPD---EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY 91 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCcc---ccEEEECCEEeecccCCcccChhhheeeeEeeccccccce
Confidence 3677777775799999999999999999999999998 999999998764322 258899999999999999
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
||+-||.|+..... ....|.+...||++|..++....
T Consensus 92 tVrgNL~YG~~~~~----------------------------------------~~~fd~iv~lLGI~hLL~R~P~~--- 128 (352)
T COG4148 92 TVRGNLRYGMWKSM----------------------------------------RAQFDQLVALLGIEHLLDRYPGT--- 128 (352)
T ss_pred EEecchhhhhcccc----------------------------------------hHhHHHHHHHhCcHHHHhhCCCc---
Confidence 99999999743210 01246788899999999999887
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
|||||||||+|||||++.|++|+||||.+.||-....+++-+|++++++.+.-++. +.|-..|+.+++|+|++|++|
T Consensus 129 --LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlY-VSHS~~Ev~RLAd~vV~le~G 205 (352)
T COG4148 129 --LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILY-VSHSLDEVLRLADRVVVLENG 205 (352)
T ss_pred --cCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEE-EecCHHHHHhhhheEEEecCC
Confidence 99999999999999999999999999999999999999999999999876655554 455667999999999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
++...|+.+++..
T Consensus 206 kV~A~g~~e~v~~ 218 (352)
T COG4148 206 KVKASGPLEEVWG 218 (352)
T ss_pred eEEecCcHHHHhc
Confidence 9999999999853
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=317.74 Aligned_cols=218 Identities=20% Similarity=0.267 Sum_probs=172.1
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--c-eEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~g 930 (1389)
.+.++|+++.++ .+.+|+|+|++|++||++||+|+||||||||+++|+|.... . +.+|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 467888876542 24699999999999999999999999999999999996431 1 2479999999
Q ss_pred ccCC-----hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCC
Q 000615 931 YPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 931 ~~~~-----~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~ 1005 (1389)
.+.. ....++.++|++|++.+++ .||.||+.+....+. .. ...++.+.++++.+++.+..+.... ..+.
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLK-QSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhc-CCcc
Confidence 8652 2334667999999988887 499999987653321 11 1233456777888887431111111 1245
Q ss_pred CCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec---
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR--- 1082 (1389)
Q Consensus 1006 ~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~--- 1082 (1389)
.||||||||++|||+|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|+++ ++.+.||++++|++
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 7999999999999999999999999999999999999999999999975 589999999986 68889999999972
Q ss_pred -----CcEEEEecCC
Q 000615 1083 -----GGRVIYAGPL 1092 (1389)
Q Consensus 1083 -----gG~~~~~g~~ 1092 (1389)
.|++++.|+.
T Consensus 229 ~~~~~~g~i~~~~~~ 243 (264)
T PRK14243 229 EGGGRYGYLVEFDRT 243 (264)
T ss_pred cccccCceEEEeCCH
Confidence 5899998875
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=314.92 Aligned_cols=207 Identities=18% Similarity=0.319 Sum_probs=165.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCCC-----cCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 256 (1389)
+.+|+|+|+++++|++++|+||||||||||+++|+|..+|. ...+|+|.++|+++.... .++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (251)
T PRK14270 17 KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNP 96 (251)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCCc
Confidence 35899999999999999999999999999999999998641 124899999999875321 24569999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++ +||+||+.|.....+... .. + ....++.+++.+||. +..+
T Consensus 97 ~~-~tv~enl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 142 (251)
T PRK14270 97 FP-MSIYDNVAYGPRIHGIKD---------KK----------E--------------LDKIVEWALKKAALWDEVKDDLK 142 (251)
T ss_pred CC-CcHHHHHHhHHHhcCCCc---------HH----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 87 899999988643221100 00 0 011244567777774 2345
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||++++.+|++++|||||+|||+.++.++.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 143 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d 214 (251)
T PRK14270 143 KSALK-----LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSD 214 (251)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcC
Confidence 55544 999999999999999999999999999999999999999999999865 46777776654 57889999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|++++.|+.+++.
T Consensus 215 ~v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 215 YTAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEEECCeEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=316.60 Aligned_cols=208 Identities=22% Similarity=0.333 Sum_probs=166.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (258)
T PRK14241 17 FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNP 96 (258)
T ss_pred EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEcccccc
Confidence 359999999999999999999999999999999999986411 1389999999987421 124579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++.+||+||+.++....+... .. + ....++.+++.+||. +..+
T Consensus 97 ~~~~tv~~nl~~~~~~~~~~~---------~~----------~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (258)
T PRK14241 97 FPTMSIRDNVVAGLKLNGVRN---------KK----------D--------------LDELVEKSLRGANLWNEVKDRLD 143 (258)
T ss_pred CCCCcHHHHHHHHHHhcCCCC---------HH----------H--------------HHHHHHHHHHHcCCchhhhhHhh
Confidence 999999999987643211000 00 0 011345667788874 3445
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d 215 (258)
T PRK14241 144 KPGGG-----LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSD 215 (258)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999864 46777766654 57889999
Q ss_pred eEEEEc------CCeEEEecChhHHH
Q 000615 413 DIILLS------EGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~------~G~iv~~G~~~~~~ 432 (1389)
+|++|+ +|++++.|+++++.
T Consensus 216 ~i~~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 216 QTAFFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEEEEecccCCCCceEEecCCHHHHH
Confidence 999997 79999999998874
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-33 Score=351.36 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=168.9
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 261 (1389)
++|+|+|+++++|+.++|+||||||||||+++|+|.++|+ +|+|.+||.++++... ++.++||+|++.+++ .|
T Consensus 349 ~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~t 424 (585)
T TIGR01192 349 QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPT---VGQILIDGIDINTVTRESLRKSIATVFQDAGLFN-RS 424 (585)
T ss_pred ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCC---CCEEEECCEEhhhCCHHHHHhheEEEccCCccCc-cc
Confidence 5899999999999999999999999999999999999997 9999999999876543 468999999998886 69
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
++||+.++... .+.++..+++...+. .+. ...+++..||.+|+ .+.
T Consensus 425 i~~Ni~~~~~~-------------------------~~~~~~~~a~~~~~~-----~~~---i~~l~~g~~t~~~~-~~~ 470 (585)
T TIGR01192 425 IRENIRLGREG-------------------------ATDEEVYEAAKAAAA-----HDF---ILKRSNGYDTLVGE-RGN 470 (585)
T ss_pred HHHHHhcCCCC-------------------------CCHHHHHHHHHHhCc-----HHH---HHhccccccchhcC-CCC
Confidence 99999875211 001111112111110 111 22366778899986 366
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
.||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++.+ ++|+|++.|++ +..+.+|+|++|++|+
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~--~~tvI~isH~~--~~~~~~d~i~~l~~G~ 546 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRK--NRTTFIIAHRL--STVRNADLVLFLDQGR 546 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEEcCh--HHHHcCCEEEEEECCE
Confidence 7999999999999999999999999999999999999999999998743 68888888876 4557799999999999
Q ss_pred EEEecChhHHHH
Q 000615 422 IVYQGPRDNVLE 433 (1389)
Q Consensus 422 iv~~G~~~~~~~ 433 (1389)
++..|+++++.+
T Consensus 547 i~~~g~~~~l~~ 558 (585)
T TIGR01192 547 LIEKGSFQELIQ 558 (585)
T ss_pred EEEECCHHHHHH
Confidence 999999998864
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=314.46 Aligned_cols=208 Identities=21% Similarity=0.292 Sum_probs=166.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.++ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14256 17 NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNP 96 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCCC
Confidence 459999999999999999999999999999999999985 3212389999999987532 124679999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 332 (1389)
++.+||+||+.++.+..+... . .+ ....++..++.+||.. ..+
T Consensus 97 ~~~~tv~enl~~~~~~~~~~~---------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 97 FPAMSIYDNVIAGYKLNGRVN---------R----------SE--------------ADEIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred CCcCcHHHHHHhHHHhcCCCC---------H----------HH--------------HHHHHHHHHHHcCCchhhhHHhh
Confidence 999999999987533211000 0 00 0112456777888753 234
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++.++.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d 215 (252)
T PRK14256 144 SNAME-----LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSD 215 (252)
T ss_pred CCcCc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCC
Confidence 44544 999999999999999999999999999999999999999999999975 46777776654 47889999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
++++|++|+++..|+.+++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 216 YTAFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=318.24 Aligned_cols=206 Identities=18% Similarity=0.281 Sum_probs=162.2
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|.+++.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 26 ~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 26 FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 359999999999999999999999999999999999986310 1389999999987421 123569999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++ .||+||+.+++...+... +. ...++.+++.+++. +..|
T Consensus 106 ~~-~tv~enl~~~~~~~~~~~---------------------~~--------------~~~~~~~l~~~~l~~~l~~~~~ 149 (269)
T PRK14259 106 FP-KSIYENIAFGARINGYTG---------------------DM--------------DELVERSLRKAAVWDECKDKLN 149 (269)
T ss_pred ch-hhHHHHHhhhhhhcCCcH---------------------HH--------------HHHHHHHHHHhCCcchhhhhhC
Confidence 87 599999988654321100 00 01123455666653 3345
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+.+ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.++||
T Consensus 150 ~~~~~-----LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d 221 (269)
T PRK14259 150 ESGYS-----LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSD 221 (269)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcC
Confidence 55544 999999999999999999999999999999999999999999999854 56777666654 58889999
Q ss_pred eEEEEcC-----------CeEEEecChhHHHH
Q 000615 413 DIILLSE-----------GQIVYQGPRDNVLE 433 (1389)
Q Consensus 413 ~iilL~~-----------G~iv~~G~~~~~~~ 433 (1389)
++++|++ |++++.|+++++.+
T Consensus 222 ~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 222 MTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EEEEEeccccccccccccceEEEeCCHHHHHh
Confidence 9999996 67899999988753
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=314.91 Aligned_cols=207 Identities=20% Similarity=0.285 Sum_probs=165.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|+++++||+++|+|||||||||||++|+|.++|. ...+|+|.++|+++... ..++.++|++|++.+
T Consensus 33 ~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 112 (267)
T PRK14237 33 KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNP 112 (267)
T ss_pred eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCcc
Confidence 35999999999999999999999999999999999998641 12389999999987532 124579999999888
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccc----cc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC----AD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~----~d 332 (1389)
++ .||+||+.++.+..+.. ...+ ....++.+++.+||.++ .+
T Consensus 113 ~~-~tv~eni~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~~i~~~~~ 158 (267)
T PRK14237 113 FA-KSIYENITFALERAGVK-------------------DKKV--------------LDEIVETSLKQAALWDQVKDDLH 158 (267)
T ss_pred cc-ccHHHHHHhHHHhcCCC-------------------CHHH--------------HHHHHHHHHHHcCCCchhhhhhc
Confidence 87 69999998864321100 0000 01124556778888543 34
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
..+ +.|||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.++||
T Consensus 159 ~~~-----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 230 (267)
T PRK14237 159 KSA-----LTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNM-QQAARASD 230 (267)
T ss_pred CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhcC
Confidence 444 45999999999999999999999999999999999999999999999853 56777776655 47889999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
++++|++|++++.|+.+++.
T Consensus 231 ~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 231 YTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999998874
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=315.99 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=167.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCee-----CCCCCc-------CceEEEec
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE-----LNEFVP-------QRTCAYIS 251 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~-----~~~~~~-------~~~~~yv~ 251 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.+ +..... ++.++|++
T Consensus 19 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 19 RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD---AGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 35999999999999999999999999999999999999887 8999999987 654322 24699999
Q ss_pred CCCC--CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc
Q 000615 252 QHDL--HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI 329 (1389)
Q Consensus 252 Q~d~--~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~ 329 (1389)
|++. +++.+|+.||+.+.....+.. ..++ ....++.+++.+|+.+
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~-------------------~~~~--------------~~~~~~~~l~~~~l~~ 142 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGAR-------------------HYGD--------------IRATAGDWLERVEIDA 142 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccC-------------------cHHH--------------HHHHHHHHHHHcCCCh
Confidence 9973 567789999997632110000 0000 0113456788999974
Q ss_pred -cccccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHH
Q 000615 330 -CADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETY 408 (1389)
Q Consensus 330 -~~dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~ 408 (1389)
..++.+++ |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .++.
T Consensus 143 ~~~~~~~~~-----LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~ 216 (258)
T PRK11701 143 ARIDDLPTT-----FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVAR 216 (258)
T ss_pred hHHhCCCcc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHH
Confidence 56777765 9999999999999999999999999999999999999999999998765467777766654 5777
Q ss_pred hhcCeEEEEcCCeEEEecChhHHH
Q 000615 409 DLFDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 409 ~~~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
+.+|+|++|++|++++.|+++++.
T Consensus 217 ~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 217 LLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HhcCEEEEEECCEEEEeCCHHHHh
Confidence 899999999999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-33 Score=315.54 Aligned_cols=214 Identities=26% Similarity=0.310 Sum_probs=170.4
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc--
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP-- 932 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~-- 932 (1389)
++++|+++.++ .+.+|+|||++|++|++++|+|+||||||||+++|+|...+ .+|+|.++|.+
T Consensus 4 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~~ 68 (253)
T TIGR02323 4 LQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP--DHGTATYIMRSGA 68 (253)
T ss_pred EEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCcEEEEeccccc
Confidence 57777776442 24589999999999999999999999999999999997653 47999999875
Q ss_pred ---CCh---hh----hhheeeEeccCCC--CCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCc-ccccccc
Q 000615 933 ---KNQ---ET----FARVSGYCEQNDI--HSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-SLNDSMV 999 (1389)
Q Consensus 933 ---~~~---~~----~~~~~gyv~Q~~~--~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~ 999 (1389)
... .. .++.++|++|++. +.+.+|+.|++.+..... .. ....+..+.++++++.+++. +..+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~~-~~~~~~~~~~~~~l~~l~l~~~~~~~~- 145 (253)
T TIGR02323 69 ELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-GA-RHYGNIRAAAHDWLEEVEIDPTRIDDL- 145 (253)
T ss_pred ccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-cc-cchHHHHHHHHHHHHHcCCChhhhhcC-
Confidence 321 11 2346899999975 445679999987543211 11 11123345688999999996 355554
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEE
Q 000615 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELL 1078 (1389)
Q Consensus 1000 g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l 1078 (1389)
+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++.++ |.|||+++|++. ++.+.+|+++
T Consensus 146 ----~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~ 220 (253)
T TIGR02323 146 ----PRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLL 220 (253)
T ss_pred ----chhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 4579999999999999999999999999999999999999999999998754 899999999976 5667899999
Q ss_pred EEecCcEEEEecCC
Q 000615 1079 LLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1079 ~l~~gG~~~~~g~~ 1092 (1389)
+|.+ |++++.|+.
T Consensus 221 ~l~~-G~i~~~~~~ 233 (253)
T TIGR02323 221 VMQQ-GRVVESGLT 233 (253)
T ss_pred EEEC-CEEEEECCH
Confidence 9985 899988874
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-33 Score=314.75 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=173.0
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--Cce--EEEEEEEcC
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--GGY--IEGDIKISG 930 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~g~--~~G~i~i~g 930 (1389)
+.++|+++.+ +++.+|+||||++.+||+++|+|+||||||||+++|+|... .|. +.|++.++|
T Consensus 11 i~~~~~~~~~-------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g 77 (257)
T PRK14246 11 FNISRLYLYI-------------NDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFG 77 (257)
T ss_pred eeeeeEEEec-------------CCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECC
Confidence 6777776543 34569999999999999999999999999999999999644 232 236676766
Q ss_pred ccCC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----cccccccCCC
Q 000615 931 YPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSMVGLPG 1003 (1389)
Q Consensus 931 ~~~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~~g~~~ 1003 (1389)
.+.. ....++.++|++|++.+++.+|++||+.+...... ....++..+.++++++.+++.+ ..+..
T Consensus 78 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----- 150 (257)
T PRK14246 78 KDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP----- 150 (257)
T ss_pred cccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC-----
Confidence 6542 23356779999999999999999999988643221 1122344456889999999864 23332
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
+..||+|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ ++|||++||+++ .+.+.||++++|. +
T Consensus 151 ~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~-~ 227 (257)
T PRK14246 151 ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLY-N 227 (257)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEE-C
Confidence 457999999999999999999999999999999999999999999999864 699999999976 5668899999998 4
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|+++..|+.
T Consensus 228 g~i~~~g~~ 236 (257)
T PRK14246 228 GELVEWGSS 236 (257)
T ss_pred CEEEEECCH
Confidence 899888875
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=314.69 Aligned_cols=206 Identities=19% Similarity=0.259 Sum_probs=164.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc---CCCCCceeEEEECCeeCCCCC-----cCceEEEecCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL---GKDLRASGKITYCGHELNEFV-----PQRTCAYISQHDL 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~---~~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~ 255 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.. ++. ..+|+|.++|+++.... .++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCC-CCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 45999999999999999999999999999999999973 331 13899999999875421 2357999999988
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccc----c
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDIC----A 331 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~----~ 331 (1389)
+++ .||+||+.++.+..+... .+ .....++.+++.+||.+. .
T Consensus 95 ~~~-~tv~~nl~~~~~~~~~~~--------------------~~-------------~~~~~~~~~l~~~~l~~~~~~~~ 140 (250)
T PRK14245 95 PFP-KSIFENVAYGLRVNGVKD--------------------NA-------------FIRQRVEETLKGAALWDEVKDKL 140 (250)
T ss_pred cCc-ccHHHHHHHHHHHcCCCc--------------------HH-------------HHHHHHHHHHHHcCCCcchhhhh
Confidence 886 699999987643221100 00 001134567888888643 3
Q ss_pred cccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhc
Q 000615 332 DTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411 (1389)
Q Consensus 332 dt~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~ 411 (1389)
+..++ .|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++
T Consensus 141 ~~~~~-----~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~ 212 (250)
T PRK14245 141 KESAF-----ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK--DYTIVIVTHNM-QQAARVS 212 (250)
T ss_pred hCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHhhC
Confidence 44444 4999999999999999999999999999999999999999999999853 56777766655 4788999
Q ss_pred CeEEEEcCCeEEEecChhHHH
Q 000615 412 DDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 412 D~iilL~~G~iv~~G~~~~~~ 432 (1389)
|+|++|++|+++++|+++++.
T Consensus 213 d~v~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 213 DKTAFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999874
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=359.55 Aligned_cols=210 Identities=24% Similarity=0.351 Sum_probs=177.8
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++++|++|.++. ++.+|+|+|++++|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p--~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL--TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC--CCceEEECCEE
Confidence 46899999987641 13599999999999999999999999999999999998664 47999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc-------cccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN-------DSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~-------~~~~g~~ 1002 (1389)
++ ...+++.++||+|++.+++. |++||+.++. +.+ ++.++++++.+|+.+.. |+.+|..
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~----d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~ 473 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DIS----EEQVWQALETVQLAELARSLPDGLYTPLGEQ 473 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCC----HHHHHHHHHHcCcHHHHHhccccccccccCC
Confidence 64 45678899999999999886 9999998752 122 23478888888876543 4555543
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
..+||||||||++|||||+++|+||+||||||+||+.+++.|.+.|+++.+ ++|||+++|+++ ....+|++++|+
T Consensus 474 -g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~- 548 (592)
T PRK10790 474 -GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLH- 548 (592)
T ss_pred -CCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEE-
Confidence 357999999999999999999999999999999999999999999999864 799999999974 567899999998
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
+|+++..|+.
T Consensus 549 ~G~i~~~G~~ 558 (592)
T PRK10790 549 RGQAVEQGTH 558 (592)
T ss_pred CCEEEEEcCH
Confidence 5899999985
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-34 Score=284.09 Aligned_cols=208 Identities=22% Similarity=0.321 Sum_probs=175.3
Q ss_pred cccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC-------------Ch---hhh
Q 000615 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK-------------NQ---ETF 938 (1389)
Q Consensus 875 ~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~-------------~~---~~~ 938 (1389)
+.++...+|++||+..+.|+++.|+|.|||||||+|++|.-..+ +..|.|.+||..+ +. ..+
T Consensus 14 K~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~--P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 14 KRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK--PSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred hhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC--CCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 34567889999999999999999999999999999999987655 3479999998642 11 124
Q ss_pred hheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHH
Q 000615 939 ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA 1018 (1389)
Q Consensus 939 ~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia 1018 (1389)
|...|+|+|+..++..+||.||+.-.-.-- ...++.+..++.+..|..+|+.+.+|.. +..|||||+||++||
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~Y-----P~~LSGGQQQR~aIA 164 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAY-----PAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcC-----ccccCchHHHHHHHH
Confidence 456899999999999999999997543211 1345566677889999999999988876 347999999999999
Q ss_pred HHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCC
Q 000615 1019 VELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1019 ~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~ 1093 (1389)
|||+.+|+++++|||||.|||+-.-++.+.+++++++|+|.+++||.+.. .-+...+++.|. .|.+.+.||+.
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~F-AR~Vss~v~fLh-~G~iEE~G~P~ 237 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF-ARDVSSHVIFLH-QGKIEEEGPPE 237 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhH-HHhhhhheEEee-cceecccCChH
Confidence 99999999999999999999999999999999999999999999998653 445567888887 48999999973
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-33 Score=313.99 Aligned_cols=218 Identities=22% Similarity=0.313 Sum_probs=172.9
Q ss_pred EEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCC--C-ceEEEEEEEcCc
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT--G-GYIEGDIKISGY 931 (1389)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~--~-g~~~G~i~i~g~ 931 (1389)
++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|... + .+.+|+|.++|.
T Consensus 4 l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (250)
T PRK14266 4 IEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV 70 (250)
T ss_pred EEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE
Confidence 56777765442 3469999999999999999999999999999999999642 1 124799999998
Q ss_pred cCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCC
Q 000615 932 PKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006 (1389)
Q Consensus 932 ~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~ 1006 (1389)
++.. ...++.++|++|++.+++. |+.||+.+...... ....+...+.+.++++.+++.+....... ..+..
T Consensus 71 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~-~~~~~ 146 (250)
T PRK14266 71 DIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHG--EDDEDFIEERVEESLKAAALWDEVKDKLD-KSALG 146 (250)
T ss_pred EcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcC--CCCHHHHHHHHHHHHHHcCCchhHHHHHh-CCccc
Confidence 7532 2346779999999988875 99999987643221 11223345668889999988542211111 12457
Q ss_pred CCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEE
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1007 LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~ 1086 (1389)
||+|||||++||++|+.+|+||+|||||+|||+.++..+.+.|+++++ ++|||+++|++. ++.+.+|++++|.+ |++
T Consensus 147 LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~-G~i 223 (250)
T PRK14266 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLN-GEI 223 (250)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEEC-CeE
Confidence 999999999999999999999999999999999999999999999864 899999999986 67788899999974 899
Q ss_pred EEecCC
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~g~~ 1092 (1389)
++.|+.
T Consensus 224 ~~~g~~ 229 (250)
T PRK14266 224 IESGLT 229 (250)
T ss_pred EEeCCH
Confidence 998874
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-33 Score=307.95 Aligned_cols=192 Identities=29% Similarity=0.421 Sum_probs=160.9
Q ss_pred eeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCC-------cCceEEEecCCCCCCCCCC
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 189 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~-------~~~~~~yv~Q~d~~~~~lT 261 (1389)
|+|+++++ ++++|+||||||||||+++|+|.++|+ +|+|.++|.++.... .++.++|++|++.+++.+|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 91 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPD---GGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLN 91 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCC
Confidence 99999999 999999999999999999999999887 999999998874311 2357999999999998999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
|+||+.+...... ..+ ....++..++.+||++..++.+++
T Consensus 92 ~~~~l~~~~~~~~------------~~~------------------------~~~~~~~~l~~~~l~~~~~~~~~~---- 131 (214)
T cd03297 92 VRENLAFGLKRKR------------NRE------------------------DRISVDELLDLLGLDHLLNRYPAQ---- 131 (214)
T ss_pred HHHHHHHHHhhCC------------HHH------------------------HHHHHHHHHHHcCCHhHhhcCccc----
Confidence 9999987532100 000 011245678899998777777766
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
|||||||||+||+|++.+|++++|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++++|++|+
T Consensus 132 -LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 209 (214)
T cd03297 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGR 209 (214)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999765467777766654 57788999999999999
Q ss_pred EEEec
Q 000615 422 IVYQG 426 (1389)
Q Consensus 422 iv~~G 426 (1389)
++.+|
T Consensus 210 i~~~g 214 (214)
T cd03297 210 LQYIG 214 (214)
T ss_pred EEecC
Confidence 98875
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=313.59 Aligned_cols=207 Identities=18% Similarity=0.285 Sum_probs=162.3
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCCC-----cCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|..+ +....+|+|.++|+++.... .++.++|++|++.+
T Consensus 34 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 113 (268)
T PRK14248 34 KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPNP 113 (268)
T ss_pred ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCcc
Confidence 359999999999999999999999999999999999864 11113899999999875321 24579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++. ||+||+.++....+... ... ....++..++.+++. +..+
T Consensus 114 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 159 (268)
T PRK14248 114 FPK-SIYNNITHALKYAGERR-------------------KSV--------------LDEIVEESLTKAALWDEVKDRLH 159 (268)
T ss_pred Ccc-cHHHHHHHHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCcchHHHHh
Confidence 875 99999987532211000 000 001234456666764 2345
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ ||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|
T Consensus 160 ~~~~~-----LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d 231 (268)
T PRK14248 160 SSALS-----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSD 231 (268)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999864 46777776664 47889999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|++++.|+.+++.
T Consensus 232 ~v~~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 232 RTAFFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988764
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.31 Aligned_cols=195 Identities=20% Similarity=0.290 Sum_probs=164.6
Q ss_pred ccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCH
Q 000615 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 878 ~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
..+.+|+|||++|++||++||+||||||||||+++|+|...+ .+|+|.++|. ++++.|+..+.+.+|+
T Consensus 35 ~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p--~~G~I~~~g~----------~~~~~~~~~~~~~~tv 102 (264)
T PRK13546 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP--TVGKVDRNGE----------VSVIAISAGLSGQLTG 102 (264)
T ss_pred CceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC--CceEEEECCE----------EeEEecccCCCCCCcH
Confidence 346799999999999999999999999999999999997653 4799999984 3567777777788999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
.||+.+..... ....++..+.++++++.+++.+..+.. +..||||||||++||++|+.+|+||+|||||+||
T Consensus 103 ~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~-----~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gL 174 (264)
T PRK13546 103 IENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQP-----VKKYSSGMRAKLGFSINITVNPDILVIDEALSVG 174 (264)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCC-----cccCCHHHHHHHHHHHHHhhCCCEEEEeCccccC
Confidence 99998754332 122344445678889999998777665 4579999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
|+.++..+.+.|+++.+.|+|||+++|++. ++.+.+|++++|. +|++++.|+..+
T Consensus 175 D~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~-~G~i~~~g~~~~ 229 (264)
T PRK13546 175 DQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIE-GGKLKDYGELDD 229 (264)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEE-CCEEEEeCCHHH
Confidence 999999999999998777999999999975 5677899999997 589998887543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=313.26 Aligned_cols=207 Identities=21% Similarity=0.294 Sum_probs=163.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|+++++||+++|+||||||||||+++|+|..+ |+...+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~ 97 (252)
T PRK14239 18 KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNP 97 (252)
T ss_pred eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCcc
Confidence 359999999999999999999999999999999999853 4222389999999987432 124579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 332 (1389)
++ +||+||+.++....+... ... ....++.+++.+|+.. ..+
T Consensus 98 ~~-~tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14239 98 FP-MSIYENVVYGLRLKGIKD-------------------KQV--------------LDEAVEKSLKGASIWDEVKDRLH 143 (252)
T ss_pred Cc-CcHHHHHHHHHHHcCCCc-------------------HHH--------------HHHHHHHHHHHcCCchhHHHHHh
Confidence 87 899999987643221100 000 0112345667777643 234
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
..+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+.+|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d 215 (252)
T PRK14239 144 DSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCC
Confidence 44444 999999999999999999999999999999999999999999999864 46777766654 47889999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|++++.|+.+++.
T Consensus 216 ~i~~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 216 RTGFFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998874
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-33 Score=352.45 Aligned_cols=208 Identities=24% Similarity=0.378 Sum_probs=169.8
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|++++|||.++|+||||||||||+++|+|.++|. +|+|.+||.++++..+ ++.++||+|++.+|+ .
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~---~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~ 428 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQ---SGRILLDGVDLRQLDPAELRARMALVPQDPVLFA-A 428 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCC---CCEEEECCEEHHhcCHHHHHHhceEEccCCcccc-c
Confidence 46999999999999999999999999999999999999987 8999999999877654 467999999998885 6
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~ 340 (1389)
|++|||.++... .+.++..+++...+ ....++ .+++..||.+|+. +
T Consensus 429 Ti~~Ni~~~~~~-------------------------~~~~~~~~~l~~~~------l~~~i~--~l~~gl~t~i~~~-g 474 (576)
T TIGR02204 429 SVMENIRYGRPD-------------------------ATDEEVEAAARAAH------AHEFIS--ALPEGYDTYLGER-G 474 (576)
T ss_pred cHHHHHhcCCCC-------------------------CCHHHHHHHHHHcC------cHHHHH--hCCCCCCceeCCC-C
Confidence 999999875211 00111112211111 111222 3567789999873 5
Q ss_pred cCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCC
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G 420 (1389)
+.||||||||+++|||++++|++++||||||+||+.++..+.+.|+++.+ ++|+|+..|++ +....+|+|++|++|
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~--~~t~IiitH~~--~~~~~~d~vi~l~~g 550 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK--GRTTLIIAHRL--ATVLKADRIVVMDQG 550 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEEEEECC
Confidence 66999999999999999999999999999999999999999999998753 67888888876 566889999999999
Q ss_pred eEEEecChhHHHH
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~iv~~G~~~~~~~ 433 (1389)
+++..|+++++.+
T Consensus 551 ~~~~~g~~~~l~~ 563 (576)
T TIGR02204 551 RIVAQGTHAELIA 563 (576)
T ss_pred EEEeeecHHHHHH
Confidence 9999999998754
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-33 Score=301.12 Aligned_cols=171 Identities=40% Similarity=0.725 Sum_probs=151.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCc--CCCCCceeEEEECCeeCCCCCcCceEEEecCCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMT 261 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~--~~~~~~~G~I~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 261 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.+ +|. +|+|.++|+++.....++.++|++|++.+++.+|
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~---~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV---SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLT 98 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC---ceEEEECCEeCchHhhhheEEEccCcccCCCCCc
Confidence 46999999999999999999999999999999999999 776 8999999998765334567999999999999999
Q ss_pred HHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCcccc
Q 000615 262 VRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRR 341 (1389)
Q Consensus 262 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~r 341 (1389)
++||+.+..+ +.
T Consensus 99 ~~~~i~~~~~-----------------------------------------------------~~--------------- 110 (194)
T cd03213 99 VRETLMFAAK-----------------------------------------------------LR--------------- 110 (194)
T ss_pred HHHHHHHHHH-----------------------------------------------------hc---------------
Confidence 9999976310 00
Q ss_pred CCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEcCCe
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~~G~ 421 (1389)
.|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++.+. +.|+|++.|++..++.+.+|++++|++|+
T Consensus 111 ~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~-~~tiii~sh~~~~~~~~~~d~v~~l~~G~ 189 (194)
T cd03213 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADT-GRTIICSIHQPSSEIFELFDKLLLLSQGR 189 (194)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence 39999999999999999999999999999999999999999999998653 78888888887667888999999999999
Q ss_pred EEEec
Q 000615 422 IVYQG 426 (1389)
Q Consensus 422 iv~~G 426 (1389)
+++.|
T Consensus 190 i~~~~ 194 (194)
T cd03213 190 VIYFG 194 (194)
T ss_pred EEecC
Confidence 98765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=316.54 Aligned_cols=195 Identities=26% Similarity=0.351 Sum_probs=156.3
Q ss_pred eeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---hhhhhheeeEeccCCCCCCCCCH
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 881 ~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
.+|+|+||++++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ....++.++|++|++.+++ .||
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv 92 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD--VDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTV 92 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc--CCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccH
Confidence 59999999999999999999999999999999999765 34799999997643 2345667999999988876 699
Q ss_pred HHHHHHHHHhhcCCCCcHHHHH-----HHHHHHHHHc--CCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 958 YESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELV--ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~-----~~v~~~l~~l--~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
+||+.+.... ....... ..+++.++.+ ++.+..+.. +..||||||||++||++|+.+|++|+|
T Consensus 93 ~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~LS~G~~qrv~la~al~~~p~lllL 162 (234)
T cd03251 93 AENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVKLSGGQRQRIAIARALLKDPPILIL 162 (234)
T ss_pred HHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999875321 1111111 1234455554 444444433 457999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||||+|||+.++..+.+.|+++. +|.|||++||+++ ++ +.||++++|.+ |++++.|+.
T Consensus 163 DEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 220 (234)
T cd03251 163 DEATSALDTESERLVQAALERLM-KNRTTFVIAHRLS-TI-ENADRIVVLED-GKIVERGTH 220 (234)
T ss_pred eCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEecC-CeEeeeCCH
Confidence 99999999999999999999986 4899999999986 45 45999999985 788888764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=311.63 Aligned_cols=195 Identities=26% Similarity=0.415 Sum_probs=159.0
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhhhheeeEeccCCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
+.+|+|+|++|++|++++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++ .|
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 93 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK--PTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GT 93 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-ch
Confidence 459999999999999999999999999999999999754 247999999986532 234567999999998776 69
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccccccccc------CCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g------~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
|.|++.+... ... .+.+.++++.+++.+..+.... ...+..||||||||++||++|+.+|++|+|
T Consensus 94 v~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llll 164 (220)
T cd03245 94 LRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLL 164 (220)
T ss_pred HHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999976421 111 1235678888888776665421 112458999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEec
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g 1090 (1389)
||||+|||+.++..+.+.|++++++ +|||++||+++ ..+.+|++++|.+ |++++.|
T Consensus 165 DEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~--~~~~~d~v~~l~~-g~i~~~~ 220 (220)
T cd03245 165 DEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS--LLDLVDRIIVMDS-GRIVADG 220 (220)
T ss_pred eCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH--HHHhCCEEEEEeC-CeEeecC
Confidence 9999999999999999999998764 89999999976 3478999999985 7877653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-33 Score=317.03 Aligned_cols=213 Identities=27% Similarity=0.367 Sum_probs=170.9
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC-----CCceeEEEECCeeCCCCCc---CceEEEecCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-----LRASGKITYCGHELNEFVP---QRTCAYISQHDL 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~-----~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~ 255 (1389)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++|+ ...+|+|.++|+++..... ++.++|++|++.
T Consensus 14 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~ 93 (272)
T PRK13547 14 RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQ 93 (272)
T ss_pred EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccCC
Confidence 46999999999999999999999999999999999998774 1137999999998764332 346899999987
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMV 335 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~v 335 (1389)
.++.+||+||+.++...... . .+... . +....++.+++.+||++..++.+
T Consensus 94 ~~~~~tv~e~l~~~~~~~~~--~-------------~~~~~-~--------------~~~~~~~~~l~~~~l~~~~~~~~ 143 (272)
T PRK13547 94 PAFAFSAREIVLLGRYPHAR--R-------------AGALT-H--------------RDGEIAWQALALAGATALVGRDV 143 (272)
T ss_pred CCCCCcHHHHHhhccccccc--c-------------cccCC-H--------------HHHHHHHHHHHHcCcHhhhcCCc
Confidence 66679999999875321000 0 00000 0 00123566888999987777777
Q ss_pred cCccccCCChhHhhHHHHHHHHh---------cCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcch
Q 000615 336 GDEMRRGISGGQKKRVTTGEMLV---------GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPE 406 (1389)
Q Consensus 336 g~~~~rGLSGGqkqRvsia~al~---------~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~ 406 (1389)
++ |||||||||+||+||+ .+|++|+|||||+|||+.++..+.+.|+++.+..+.|+|++.|++ .+
T Consensus 144 ~~-----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~ 217 (272)
T PRK13547 144 TT-----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NL 217 (272)
T ss_pred cc-----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HH
Confidence 66 9999999999999999 599999999999999999999999999998765467877777665 47
Q ss_pred HHhhcCeEEEEcCCeEEEecChhHHH
Q 000615 407 TYDLFDDIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 407 ~~~~~D~iilL~~G~iv~~G~~~~~~ 432 (1389)
+.+++|++++|++|++++.|+.+++.
T Consensus 218 ~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 218 AARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HHHhCCEEEEEECCeEEEecCHHHHc
Confidence 78899999999999999999988763
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=305.57 Aligned_cols=196 Identities=26% Similarity=0.401 Sum_probs=165.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d~~~ 257 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|+++....+ ++.++|++|++.++
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~ 94 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQ---EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL 94 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhc
Confidence 56999999999999999999999999999999999999887 9999999998764332 35799999999999
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccC
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~ 337 (1389)
+.+|+.||+.++...... ...+ +....++.+++.+||.+..++.+.+
T Consensus 95 ~~~t~~~n~~~~~~~~~~---------~~~~------------------------~~~~~~~~~l~~~~l~~~~~~~~~~ 141 (220)
T TIGR02982 95 GFLTARQNVQMALELQPN---------LSYQ------------------------EARERARAMLEAVGLGDHLDYYPHN 141 (220)
T ss_pred CCCCHHHHHHHHHHhccC---------CCHH------------------------HHHHHHHHHHHHcCChhhhhcChhh
Confidence 889999999886432110 0000 0011356688999998888877765
Q ss_pred ccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEE
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL 417 (1389)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++.+..++|+|++.|++. ..+.+|+|++|
T Consensus 142 -----lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l 214 (220)
T TIGR02982 142 -----LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM 214 (220)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence 99999999999999999999999999999999999999999999987655788888888763 56899999999
Q ss_pred cCCeE
Q 000615 418 SEGQI 422 (1389)
Q Consensus 418 ~~G~i 422 (1389)
++|++
T Consensus 215 ~~g~~ 219 (220)
T TIGR02982 215 EDGKL 219 (220)
T ss_pred ECCEE
Confidence 99986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=308.36 Aligned_cols=185 Identities=29% Similarity=0.378 Sum_probs=156.1
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
+.+|+|+|++|++||++||+|+||||||||+++|+|... +.+|+|.++|.+......++.++|++|++.+++.+||.|
T Consensus 15 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 92 (207)
T PRK13539 15 RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP--PAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAE 92 (207)
T ss_pred eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHHH
Confidence 469999999999999999999999999999999999755 347999999986532225667899999998888999999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
|+.+....+. .. .+.++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+|||+
T Consensus 93 ~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 160 (207)
T PRK13539 93 NLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA 160 (207)
T ss_pred HHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9987553321 11 134789999999987666553 47999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
.+...+.+.|++++++|+|||++||++. ++ .. |+++.+.
T Consensus 161 ~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~-~~-~~~~~~~ 199 (207)
T PRK13539 161 AAVALFAELIRAHLAQGGIVIAATHIPL-GL-PG-ARELDLG 199 (207)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCCch-hh-cc-CcEEeec
Confidence 9999999999998878999999999975 33 44 8887774
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=358.07 Aligned_cols=213 Identities=23% Similarity=0.329 Sum_probs=177.5
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++++|++|.++. +++.+|+|+|++|+|||++||+|+||||||||+++|+|..++ .+|+|.+||.+
T Consensus 340 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI--DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC--CCceEEECCEE
Confidence 36999999987641 124699999999999999999999999999999999997663 47999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCccc-------ccccccCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~-------~~~~~g~~ 1002 (1389)
.+ ...+++.++||+|++.+++ -|++||+.++. +.+.+ ++.++++++.+++.+. .|+.+|..
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~----~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~ 477 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYS----REQIEEAARMAYAMDFINKMDNGLDTVIGEN 477 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCC----HHHHHHHHHHhCcHHHHHhcccccCceeCCC
Confidence 64 3567888999999999886 59999997742 11122 2346777887776543 36666654
Q ss_pred CCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
...||||||||++|||+|+++|+||+||||||+||+.++..+++.|+++. +++|||++||+++ ..+.||++++|++
T Consensus 478 -g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~-~~~tvI~VtHr~~--~~~~~D~Ii~l~~ 553 (582)
T PRK11176 478 -GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEKADEILVVED 553 (582)
T ss_pred -CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEEC
Confidence 35799999999999999999999999999999999999999999999875 4799999999974 6788999999985
Q ss_pred CcEEEEecCC
Q 000615 1083 GGRVIYAGPL 1092 (1389)
Q Consensus 1083 gG~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 554 -g~i~e~g~~ 562 (582)
T PRK11176 554 -GEIVERGTH 562 (582)
T ss_pred -CEEEEeCCH
Confidence 899999984
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-33 Score=313.54 Aligned_cols=212 Identities=17% Similarity=0.292 Sum_probs=165.1
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCCC-----cCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEFV-----PQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~~-----~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|..+ +....+|+|+++|+++.... .++.++|++|++.+
T Consensus 18 ~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 97 (251)
T PRK14244 18 KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNP 97 (251)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCccc
Confidence 469999999999999999999999999999999999975 21123899999998875321 24579999999888
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCccccccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg 336 (1389)
++. ||+||+.++....+.... . .+ ....++.+++.+||.+...+.+.
T Consensus 98 ~~~-tv~~ni~~~~~~~~~~~~--------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 144 (251)
T PRK14244 98 FPK-SIYDNVAYGPKLHGLAKN--------K----------KK--------------LDEIVEKSLTSVGLWEELGDRLK 144 (251)
T ss_pred ccC-CHHHHHHHHHHhcCCCCC--------H----------HH--------------HHHHHHHHHHHcCCCchhhhHhh
Confidence 875 999999875322111000 0 00 01124567888888653222111
Q ss_pred CccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEE
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iil 416 (1389)
...+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+++|+|++
T Consensus 145 -~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d~i~~ 220 (251)
T PRK14244 145 -DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK--NFTIIVVTHSM-KQAKKVSDRVAF 220 (251)
T ss_pred -cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHhhcCEEEE
Confidence 12345999999999999999999999999999999999999999999999853 67777777665 477889999999
Q ss_pred EcCCeEEEecChhHHH
Q 000615 417 LSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 417 L~~G~iv~~G~~~~~~ 432 (1389)
|++|++++.|+++++.
T Consensus 221 l~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 221 FQSGRIVEYNTTQEIF 236 (251)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999988764
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.51 Aligned_cols=207 Identities=26% Similarity=0.302 Sum_probs=161.7
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh---hhh-hheeeEeccCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETF-ARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~---~~~-~~~~gyv~Q~~~~~~~l 955 (1389)
+.+|+|+|++|++|++++|+|+||||||||+++|+|.....+.+|+|.++|.+... ... ++.++|++|++.+++.+
T Consensus 14 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 93 (248)
T PRK09580 14 KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV 93 (248)
T ss_pred eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccch
Confidence 46999999999999999999999999999999999973111357999999987532 122 34699999999888888
Q ss_pred CHHHHHHHHHH-hhc--C-CCCcHHHHHHHHHHHHHHcCCc-ccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 956 TVYESLLYSAW-LRL--S-SDVDTKKRKMFVDEVMELVELK-SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 956 Tv~E~l~f~~~-lr~--~-~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
|+.+++.+... ++. . .........+.++++++.+++. +..+..+ ...|||||||||+|||+|+.+|+||+|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----~~~LS~G~~qrv~laral~~~p~illL 169 (248)
T PRK09580 94 SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSV----NVGFSGGEKKRNDILQMAVLEPELCIL 169 (248)
T ss_pred hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCC----CCCCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 87776643211 110 0 0111223345678899999984 3444432 126999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHh-hCeEEEEecCcEEEEecCC
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEA-FDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~~l~l~~gG~~~~~g~~ 1092 (1389)
||||+|||+.++..+.+.|+++++.|+|||++||+++ .+... +|++++|. +|++++.|+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~-~g~i~~~g~~ 230 (248)
T PRK09580 170 DESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLY-QGRIVKSGDF 230 (248)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEE-CCeEEEeCCH
Confidence 9999999999999999999999877899999999976 34444 79999997 5899998874
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=316.63 Aligned_cols=196 Identities=29% Similarity=0.404 Sum_probs=153.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---hhhhhheeeEeccCCCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
+.+|+|+||++++||+++|+|+||||||||+++|+|... +.+|+|.++|.+.. ....++.++|++|++.+++ .|
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~t 92 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD--PTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GT 92 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC--CCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhh-hh
Confidence 459999999999999999999999999999999999765 34799999997653 2234567999999988776 69
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccc-------cccCCCCCCCCHHHHHHHHHHHHHhhCCCCce
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~~~~~~LSgGqrqRl~ia~aL~~~p~ill 1029 (1389)
|+|++.+....+ ..+ .+++.++..++.+..+. ... ..+..|||||||||+||++|+.+|++|+
T Consensus 93 v~e~l~~~~~~~-----~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~LS~G~~qrv~la~al~~~p~lll 162 (238)
T cd03249 93 IAENIRYGKPDA-----TDE----EVEEAAKKANIHDFIMSLPDGYDTLVG-ERGSQLSGGQKQRIAIARALLRNPKILL 162 (238)
T ss_pred HHHHhhccCCCC-----CHH----HHHHHHHHcChHHHHHhhccccceeec-cCCccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999997743211 111 12233333333222111 111 1246899999999999999999999999
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC
Q 000615 1030 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1030 LDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~ 1092 (1389)
|||||+|||+.++..+++.|+++. +|+|||+++|+++ ++ +.||++++|.+ |++++.|+.
T Consensus 163 lDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v~~l~~-G~i~~~~~~ 221 (238)
T cd03249 163 LDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLIAVLQN-GQVVEQGTH 221 (238)
T ss_pred EeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEEEEEEC-CEEEEeCCH
Confidence 999999999999999999999987 7999999999976 34 58999999985 789988874
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=355.09 Aligned_cols=212 Identities=26% Similarity=0.417 Sum_probs=177.9
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCcc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|+++.++. +++.+|+|+|++++|||++||+||||||||||+++|+|..++ .+|+|.+||.+
T Consensus 337 ~~i~~~~v~f~y~~-----------~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p--~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPD-----------QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP--QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCC-----------CCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC--CCceEEECCEE
Confidence 46899999987631 123599999999999999999999999999999999997653 47999999987
Q ss_pred CC---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccc------cccccCCC
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN------DSMVGLPG 1003 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~------~~~~g~~~ 1003 (1389)
.. ...+++.++||+|++.+++ -|++||+.++. + +. .++.++++++.+++.+.. |+.+|..
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~----~~~~i~~al~~~~l~~~i~~p~GldT~vge~- 472 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NA----SDEALIEVLQQVGLEKLLEDDKGLNAWLGEG- 472 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-cc----CHHHHHHHHHHcCCHHHHcCccccCchhcCC-
Confidence 54 3567788999999998876 59999998753 1 22 234478899999987653 4455543
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
...||||||||++|||+|+++|+||+||||||+||+.+++.+++.|+++. +++|+|+++|+++ ....+|++++|++
T Consensus 473 g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~--~~~~~d~i~~l~~- 548 (574)
T PRK11160 473 GRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLT--GLEQFDRICVMDN- 548 (574)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChh--HHHhCCEEEEEeC-
Confidence 45799999999999999999999999999999999999999999999986 5899999999986 4567999999985
Q ss_pred cEEEEecCC
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~g~~ 1092 (1389)
|++++.|+.
T Consensus 549 G~i~~~g~~ 557 (574)
T PRK11160 549 GQIIEQGTH 557 (574)
T ss_pred CeEEEeCCH
Confidence 899999874
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=298.06 Aligned_cols=156 Identities=29% Similarity=0.443 Sum_probs=140.9
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCCH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVTV 957 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lTv 957 (1389)
..+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.+... ...++.++|++|++.+++.+|+
T Consensus 13 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~--~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 90 (173)
T cd03230 13 KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP--DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTV 90 (173)
T ss_pred eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC--CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcH
Confidence 3599999999999999999999999999999999997653 47999999987542 2345679999999998888999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCC
Q 000615 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037 (1389)
Q Consensus 958 ~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgL 1037 (1389)
.||+. ||||||||++||++|+.+|++|+|||||+||
T Consensus 91 ~~~~~--------------------------------------------LS~G~~qrv~laral~~~p~illlDEPt~~L 126 (173)
T cd03230 91 RENLK--------------------------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGL 126 (173)
T ss_pred HHHhh--------------------------------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 99873 8999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1038 DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1038 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
|+.++..+.+.|++++++|.|||+++|+++ ++.+.+|++++|.+
T Consensus 127 D~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~ 170 (173)
T cd03230 127 DPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNN 170 (173)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeC
Confidence 999999999999999877899999999976 56678999999985
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=314.38 Aligned_cols=211 Identities=25% Similarity=0.393 Sum_probs=163.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|+++.++ +.+.+|+|+|+++++||+++|+||||||||||+++|+|...+ .+|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~--~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD------------EKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP--QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC------------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC--CCCEEEECCEeH
Confidence 356777776442 123599999999999999999999999999999999997653 479999999765
Q ss_pred C---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccc-c-----CCCC
Q 000615 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV-G-----LPGV 1004 (1389)
Q Consensus 934 ~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~-g-----~~~~ 1004 (1389)
. ...+++.++|++|++.+++. |++||+.+... .... ..+++.++.+++.+..+... | ...+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 137 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENG 137 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCC
Confidence 3 23456679999999887775 99999976521 1111 12344455555543332211 0 1124
Q ss_pred CCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCc
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG 1084 (1389)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++. +|+|||++||+++ ++ +.+|++++|.+ |
T Consensus 138 ~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~i~~l~~-g 213 (229)
T cd03254 138 GNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADKILVLDD-G 213 (229)
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCEEEEEeC-C
Confidence 6899999999999999999999999999999999999999999999986 5899999999976 34 56999999985 8
Q ss_pred EEEEecCC
Q 000615 1085 RVIYAGPL 1092 (1389)
Q Consensus 1085 ~~~~~g~~ 1092 (1389)
++++.|+.
T Consensus 214 ~~~~~~~~ 221 (229)
T cd03254 214 KIIEEGTH 221 (229)
T ss_pred eEEEeCCH
Confidence 88887763
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=317.02 Aligned_cols=207 Identities=25% Similarity=0.328 Sum_probs=169.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc------CceEEEecCCC--C
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD--L 255 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~------~~~~~yv~Q~d--~ 255 (1389)
+.+|+|+|++|++|++++|+||||||||||+++|+|.++++ +|+|.++|+++....+ ++.++|++|++ .
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 101 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPS---QGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISA 101 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEeccccChhHHHHHHhcEEEEEcChhhc
Confidence 56999999999999999999999999999999999999886 9999999998765432 45799999997 3
Q ss_pred CCCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc-cccccc
Q 000615 256 HHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTM 334 (1389)
Q Consensus 256 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~-~~~dt~ 334 (1389)
+.+..|+.|++.+...... ..... +....++.+++.+||+ +..++.
T Consensus 102 ~~~~~t~~~~l~~~~~~~~---------~~~~~------------------------~~~~~~~~~l~~~gl~~~~~~~~ 148 (268)
T PRK10419 102 VNPRKTVREIIREPLRHLL---------SLDKA------------------------ERLARASEMLRAVDLDDSVLDKR 148 (268)
T ss_pred cCCCCCHHHHHHHHHHhhc---------cCCHH------------------------HHHHHHHHHHHHcCCChhHhhCC
Confidence 5677899999976421000 00000 0112356788899996 466776
Q ss_pred ccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeE
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~i 414 (1389)
+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+.|+|++.|++ .++.+++|++
T Consensus 149 ~~~-----LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~~d~i 222 (268)
T PRK10419 149 PPQ-----LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERFCQRV 222 (268)
T ss_pred Ccc-----CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHhCCEE
Confidence 665 9999999999999999999999999999999999999999999998765567777776654 4777899999
Q ss_pred EEEcCCeEEEecChhHHH
Q 000615 415 ILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 415 ilL~~G~iv~~G~~~~~~ 432 (1389)
++|++|++++.|+.+++.
T Consensus 223 ~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 223 MVMDNGQIVETQPVGDKL 240 (268)
T ss_pred EEEECCEEeeeCChhhcc
Confidence 999999999999988864
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=311.64 Aligned_cols=206 Identities=20% Similarity=0.336 Sum_probs=163.4
Q ss_pred eEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCC--CCCceeEEEECCeeCCCC-----CcCceEEEecCCCCCC
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGK--DLRASGKITYCGHELNEF-----VPQRTCAYISQHDLHH 257 (1389)
Q Consensus 185 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~--~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~~ 257 (1389)
++|+|+|++|++||+++|+||||||||||+++|+|.+++ ....+|+|.++|+++... ..++.++|++|++.++
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14240 17 QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPF 96 (250)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCccC
Confidence 589999999999999999999999999999999998753 212489999999987531 1245799999998888
Q ss_pred CCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----ccccc
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICADT 333 (1389)
Q Consensus 258 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~dt 333 (1389)
+ +||+||+.++....+.... .+ ....++..++.+++. +..++
T Consensus 97 ~-~t~~~ni~~~~~~~~~~~~-------------------~~--------------~~~~~~~~l~~~~l~~~l~~~~~~ 142 (250)
T PRK14240 97 P-MSIYDNVAYGPRTHGIKDK-------------------KK--------------LDEIVEKSLKGAALWDEVKDRLKK 142 (250)
T ss_pred c-ccHHHHHHHHHHhcCCCCH-------------------HH--------------HHHHHHHHHHHcCCchhhHHHHhc
Confidence 7 8999999886432211000 00 011234456666664 23455
Q ss_pred cccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCe
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ 413 (1389)
.+++ |||||||||+|||||+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|+. .++.+++|+
T Consensus 143 ~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~ 214 (250)
T PRK14240 143 SALG-----LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISDK 214 (250)
T ss_pred CCCC-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCCE
Confidence 5544 999999999999999999999999999999999999999999999853 56777776654 578889999
Q ss_pred EEEEcCCeEEEecChhHHH
Q 000615 414 IILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 414 iilL~~G~iv~~G~~~~~~ 432 (1389)
|++|++|+++..|+.+++.
T Consensus 215 v~~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 215 TAFFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=312.00 Aligned_cols=201 Identities=27% Similarity=0.412 Sum_probs=167.4
Q ss_pred EeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCCCH
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 186 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lTV 262 (1389)
+|+|+|+++++|++++|+||||||||||+++|+|.++ . +|+|.++|+++..... ++.++|++|++.+++.+||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~---~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv 86 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-G---SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPV 86 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-C---CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccH
Confidence 7999999999999999999999999999999999874 3 7999999998765432 2468999999888888999
Q ss_pred HHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcccccccccCccccC
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~~~dt~vg~~~~rG 342 (1389)
+||+.+.... ... . .+ ....++.+++.+||++..++.+++
T Consensus 87 ~~nl~~~~~~-~~~----------~----------~~--------------~~~~~~~~l~~~~l~~~~~~~~~~----- 126 (248)
T PRK03695 87 FQYLTLHQPD-KTR----------T----------EA--------------VASALNEVAEALGLDDKLGRSVNQ----- 126 (248)
T ss_pred HHHHHhcCcc-CCC----------c----------HH--------------HHHHHHHHHHHcCCHhHhcCCccc-----
Confidence 9999875221 000 0 00 012356688899998878887766
Q ss_pred CChhHhhHHHHHHHHhc-------CCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEE
Q 000615 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 343 LSGGqkqRvsia~al~~-------~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~ii 415 (1389)
|||||||||+||+||+. +|++++|||||+|||+.++..+.+.|+++++ .+.|+|++.|+. .++.+++|+++
T Consensus 127 LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~ 204 (248)
T PRK03695 127 LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVW 204 (248)
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEE
Confidence 99999999999999997 6799999999999999999999999999875 367777776654 47889999999
Q ss_pred EEcCCeEEEecChhHHH
Q 000615 416 LLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 416 lL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++++.|+.+++.
T Consensus 205 ~l~~G~i~~~g~~~~~~ 221 (248)
T PRK03695 205 LLKQGKLLASGRRDEVL 221 (248)
T ss_pred EEECCEEEEECCHHHHh
Confidence 99999999999988763
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=329.65 Aligned_cols=193 Identities=21% Similarity=0.301 Sum_probs=161.8
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCChhhhhheeeEeccCCCCCCCCCHHH
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~~~~~~~lTv~E 959 (1389)
+.+|+||||+|++|+++||+||||||||||+++|+|...+ .+|+|.++|.+. ++.+...+.+.+|++|
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P--~sGeI~I~G~~~----------~i~~~~~l~~~lTV~E 104 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP--NKGTVDIKGSAA----------LIAISSGLNGQLTGIE 104 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC--CceEEEECCEee----------eEEeccccCCCCcHHH
Confidence 4699999999999999999999999999999999997653 479999999641 1223345567789999
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCH
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA 1039 (1389)
Q Consensus 960 ~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~ 1039 (1389)
++.+..... ....++..+.++++++.++|.+..+..+ ..||||||||++|||+|+.+|++|+|||||+|||+
T Consensus 105 nL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~ 176 (549)
T PRK13545 105 NIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQ 176 (549)
T ss_pred HHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 998754332 1223444456788999999988777763 57999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1040 RAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1040 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
.++..+.+.|++++++|+|||+++|+++ ++.+.||++++|.+ |++++.|+..+
T Consensus 177 ~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~-GkIv~~G~~~e 229 (549)
T PRK13545 177 TFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHY-GQVKEYGDIKE 229 (549)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999998877999999999986 57788999999984 89999987643
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=311.60 Aligned_cols=207 Identities=22% Similarity=0.360 Sum_probs=164.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCC--CCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD--LRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~--~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|+++++|++++|+||||||||||+++|+|.+++. ...+|+|.++|.++... ..++.++|++|++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 95 (250)
T PRK14262 16 KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTP 95 (250)
T ss_pred ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCcc
Confidence 35899999999999999999999999999999999998741 12389999999987532 124579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCcc----ccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI----CAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~~----~~d 332 (1389)
++ +||+||+.++....+... ... ....++..++.+|+.+ ..+
T Consensus 96 ~~-~tv~e~l~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~~~~~~~ 141 (250)
T PRK14262 96 FP-MSIYDNVAFGPRIHGVKS-------------------KHK--------------LDRIVEESLKKAALWDEVKSELN 141 (250)
T ss_pred Cc-ccHHHHHHHHHHHcCCCc-------------------HHH--------------HHHHHHHHHHHcCCCchhHHHHh
Confidence 87 899999988643211100 000 0112345667777753 244
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
..++ .||||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|++++.|++ .++.+++|
T Consensus 142 ~~~~-----~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d 213 (250)
T PRK14262 142 KPGT-----RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIAD 213 (250)
T ss_pred CChh-----hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCC
Confidence 4444 4999999999999999999999999999999999999999999999864 56777776654 46888999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|+++..|+.+++.
T Consensus 214 ~i~~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 214 YIAFMYRGELIEYGPTREIV 233 (250)
T ss_pred EEEEEECCEEEEecCHHHHH
Confidence 99999999999999998874
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=328.05 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=178.6
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++++++.+ ..++|+|+|+++++||.+||+|+||||||||+..|+|... +.+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~--~~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD--PQQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC--CCCCeeeECCcCh
Confidence 68999999887532 3469999999999999999999999999999999999665 3489999999875
Q ss_pred C---hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccc-------cccCCC
Q 000615 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS-------MVGLPG 1003 (1389)
Q Consensus 934 ~---~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~-------~~g~~~ 1003 (1389)
. ...+++.++.++|...++. -|+++||.++. .+.+ ++.++++++.+||+++... .+|. +
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~-----~~As----DEel~~aL~qvgL~~l~~~~p~gl~t~lge-~ 471 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN-----PDAS----DEELWAALQQVGLEKLLESAPDGLNTWLGE-G 471 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC-----CCCC----HHHHHHHHHHcCHHHHHHhChhhhhchhcc-C
Confidence 3 3446778999999877654 59999998752 2333 3448899999999886544 3554 3
Q ss_pred CCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecC
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~g 1083 (1389)
...||||||||++|||+|++|.++++|||||.|||+.++++|++.|.+.++ |+|+|++||+.. -.+.||+|++|+ +
T Consensus 472 G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~--~le~~drIivl~-~ 547 (573)
T COG4987 472 GRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLR--GLERMDRIIVLD-N 547 (573)
T ss_pred CCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEecccc--cHhhcCEEEEEE-C
Confidence 467999999999999999999999999999999999999999999998774 999999999975 568899999998 5
Q ss_pred cEEEEecCCC
Q 000615 1084 GRVIYAGPLG 1093 (1389)
Q Consensus 1084 G~~~~~g~~~ 1093 (1389)
|++++.|..+
T Consensus 548 Gkiie~G~~~ 557 (573)
T COG4987 548 GKIIEEGTHA 557 (573)
T ss_pred CeeeecCCHH
Confidence 8999999754
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=313.44 Aligned_cols=216 Identities=22% Similarity=0.280 Sum_probs=173.2
Q ss_pred ceEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC--c-eEEEEEEEc
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG--G-YIEGDIKIS 929 (1389)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~--g-~~~G~i~i~ 929 (1389)
..++++|+++.++ ++.+|+|+|++|++||+++|+|+||||||||+++|+|...+ + +.+|+|.++
T Consensus 15 ~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~ 81 (265)
T PRK14252 15 QKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILH 81 (265)
T ss_pred ceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEc
Confidence 3578888876542 24699999999999999999999999999999999997542 2 258999999
Q ss_pred CccCC-------hhhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc----ccccc
Q 000615 930 GYPKN-------QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS----LNDSM 998 (1389)
Q Consensus 930 g~~~~-------~~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~----~~~~~ 998 (1389)
|.+.. ...+++.++|++|++.+++. ||+||+.+...... .. .....++.++++++.+++.+ ..+..
T Consensus 82 g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 82 PDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRG-VK-RRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred CccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcC-CC-hHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 87542 12346679999999988886 99999987643221 11 11222455788888888742 22332
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEE
Q 000615 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1078 (1389)
Q Consensus 999 ~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l 1078 (1389)
+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.+.+|+++
T Consensus 159 -----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~i~ 231 (265)
T PRK14252 159 -----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDYTA 231 (265)
T ss_pred -----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCEEE
Confidence 457999999999999999999999999999999999999999999999875 699999999976 5778899999
Q ss_pred EEecCcEEEEecCC
Q 000615 1079 LLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1079 ~l~~gG~~~~~g~~ 1092 (1389)
+|. +|+++..|+.
T Consensus 232 ~l~-~G~i~~~g~~ 244 (265)
T PRK14252 232 YMY-MGELIEFGAT 244 (265)
T ss_pred EEE-CCEEEEeCCH
Confidence 997 5899988874
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-33 Score=311.28 Aligned_cols=206 Identities=24% Similarity=0.399 Sum_probs=161.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCCCceeEEEECCeeCCCCCc---CceEEEecCCCCCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~~~~G~I~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 260 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|.++|+ +|+|.++|.++..... ++.++|++|++.+++ .
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~ 90 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPE---NGRVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R 90 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c
Confidence 45899999999999999999999999999999999999887 8999999988754322 457999999987764 7
Q ss_pred CHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHh--CCcccccccccCc
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL--GLDICADTMVGDE 338 (1389)
Q Consensus 261 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~l--gL~~~~dt~vg~~ 338 (1389)
||+||+.+... ... .+... +... ....+..++.+ |++...+..+++
T Consensus 91 tv~~nl~~~~~--~~~--~~~~~---------------------~~~~------~~~~~~~l~~l~~~~~~~~~~~~~~- 138 (237)
T cd03252 91 SIRDNIALADP--GMS--MERVI---------------------EAAK------LAGAHDFISELPEGYDTIVGEQGAG- 138 (237)
T ss_pred hHHHHhhccCC--CCC--HHHHH---------------------HHHH------HcCcHHHHHhCcccccchhhcCCCc-
Confidence 99999987432 100 00000 0000 00112344444 455444555544
Q ss_pred cccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcCeEEEEc
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D~iilL~ 418 (1389)
|||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++. ++ ..+|++++|+
T Consensus 139 ----LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~~-~~-~~~d~v~~l~ 210 (237)
T cd03252 139 ----LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA--GRTVIIIAHRLS-TV-KNADRIIVME 210 (237)
T ss_pred ----CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCHH-HH-HhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999863 678888877764 45 5699999999
Q ss_pred CCeEEEecChhHHHH
Q 000615 419 EGQIVYQGPRDNVLE 433 (1389)
Q Consensus 419 ~G~iv~~G~~~~~~~ 433 (1389)
+|++++.|+.+++.+
T Consensus 211 ~G~i~~~~~~~~~~~ 225 (237)
T cd03252 211 KGRIVEQGSHDELLA 225 (237)
T ss_pred CCEEEEEcCHHHHHh
Confidence 999999999988753
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=311.45 Aligned_cols=208 Identities=23% Similarity=0.319 Sum_probs=164.6
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcCCCC--CceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL--RASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~~~~--~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|++|++|++++|+||||||||||+++|+|.++|.. ..+|+|.++|+++... ..++.++|++|++.+
T Consensus 17 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 96 (252)
T PRK14272 17 KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNP 96 (252)
T ss_pred EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCcc
Confidence 469999999999999999999999999999999999987531 1379999999987532 124579999999999
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCC----ccccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL----DICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL----~~~~d 332 (1389)
++.+|+.||+.++....+... ..+. ...++..++.+++ .+..+
T Consensus 97 ~~~~t~~enl~~~~~~~~~~~-------------------~~~~--------------~~~~~~~l~~~~l~~~l~~~~~ 143 (252)
T PRK14272 97 FPTMSVFDNVVAGLKLAGIRD-------------------RDHL--------------MEVAERSLRGAALWDEVKDRLK 143 (252)
T ss_pred CcCCCHHHHHHHHHHhcCCCC-------------------HHHH--------------HHHHHHHHHHcCcchhhhhhhc
Confidence 999999999987543211000 0000 0112334444544 23446
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 144 ~~~~~-----LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d 215 (252)
T PRK14272 144 TPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSD 215 (252)
T ss_pred CCccc-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 66655 999999999999999999999999999999999999999999999864 56777766654 47888999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|++++.|+++++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 216 TTSFFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999998874
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=289.85 Aligned_cols=209 Identities=25% Similarity=0.393 Sum_probs=180.2
Q ss_pred ccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCC---hhhhhheeeEeccCCCCC
Q 000615 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHS 952 (1389)
Q Consensus 876 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~~~~~ 952 (1389)
.++.+.+|++||..|++|.+++|+|||||||||||.++++... ..+|+|.++|.+.. ...+++.++.+-|+....
T Consensus 10 ~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~--~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~ 87 (252)
T COG4604 10 SYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK--KDSGEITIDGLELTSTPSKELAKKLSILKQENHIN 87 (252)
T ss_pred hhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc--ccCceEEEeeeecccCChHHHHHHHHHHHhhchhh
Confidence 4567789999999999999999999999999999999998654 34799999998753 356778888899998888
Q ss_pred CCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeC
Q 000615 953 PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1389)
Q Consensus 953 ~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDE 1032 (1389)
..+||+|-+.|+..-..... ..++.+..++++++.++|+++.|+.. ..||||||||.-||..++.+.+.++|||
T Consensus 88 ~rlTV~dLv~FGRfPYSqGR-lt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDE 161 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGR-LTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDE 161 (252)
T ss_pred heeEHHHHhhcCCCcccCCC-CchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecC
Confidence 89999999999753322222 23455677999999999999999984 5799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCCCc
Q 000615 1033 PTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1033 PTsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~~~ 1094 (1389)
|.++||-..+..+|+.||+++++ |+|||++.||.+. .....|+++.|++ |+++..|++.+
T Consensus 162 PLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINf-AS~YsD~IVAlK~-G~vv~~G~~~e 222 (252)
T COG4604 162 PLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINF-ASCYSDHIVALKN-GKVVKQGSPDE 222 (252)
T ss_pred cccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccH-HHhhhhheeeecC-CEEEecCCHHH
Confidence 99999999999999999999876 9999999999774 4446799999985 89999999754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-33 Score=320.71 Aligned_cols=207 Identities=18% Similarity=0.316 Sum_probs=162.4
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
.++|+|+|++|++|++++|+||||||||||+++|+|..+ |....+|+|.++|.++... ..++.++|++|++.+
T Consensus 52 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 131 (286)
T PRK14275 52 FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNP 131 (286)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCC
Confidence 359999999999999999999999999999999999854 2001389999999987532 124579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++. ||+||+.++....+... ... ....++..++.+|+. +..+
T Consensus 132 ~~~-tv~enl~~~~~~~~~~~-------------------~~~--------------~~~~~~~~l~~~~l~~~l~~~~~ 177 (286)
T PRK14275 132 FPK-SIFDNIAYGPRLHGIND-------------------KKQ--------------LEEIVEKSLRKAALWDEVSDRLD 177 (286)
T ss_pred Ccc-CHHHHHHhHHHhcCCCc-------------------HHH--------------HHHHHHHHHHHhCCccchhhHhh
Confidence 874 99999988643211100 000 011234456667763 3345
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
+.+++ |||||||||+||+||+.+|++++|||||+|||+.++..+.+.|+++++ +.|+|++.|++ .++.+++|
T Consensus 178 ~~~~~-----LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d 249 (286)
T PRK14275 178 KNALG-----LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSD 249 (286)
T ss_pred CChhh-----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCC
Confidence 55544 999999999999999999999999999999999999999999999864 46777666554 57788999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
++++|++|+++..|+.+++.
T Consensus 250 ~i~~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 250 YTMFFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEEEEECCEEEEeCCHHHHH
Confidence 99999999999999988874
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-33 Score=327.51 Aligned_cols=218 Identities=27% Similarity=0.393 Sum_probs=185.8
Q ss_pred ccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh----hhhhheeeEeccCCCC
Q 000615 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ----ETFARVSGYCEQNDIH 951 (1389)
Q Consensus 876 ~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~----~~~~~~~gyv~Q~~~~ 951 (1389)
.++..++|+||||++++||++||+|.||||||||+|+|+|-.. +.+|+|.++|.+... +.....|+.|.|+..+
T Consensus 17 ~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~--p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 17 SFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP--PDSGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred EcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc--CCCceEEECCEEccCCCHHHHHhCCcEEEeechhc
Confidence 3456789999999999999999999999999999999999765 358999999987532 3345679999999999
Q ss_pred CCCCCHHHHHHHHHHhhc-CCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCcee
Q 000615 952 SPYVTVYESLLYSAWLRL-SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFM 1030 (1389)
Q Consensus 952 ~~~lTv~E~l~f~~~lr~-~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illL 1030 (1389)
.|++||.||+.++...+. ..-++.+...+...++|+.+++....++.+ .+||+||||.|.|||||..+++||+|
T Consensus 95 ~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v-----~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLV-----GDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhh-----hhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999988765543 233556677778899999999864466665 47999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEecCcEEEEecCC-Cc-chhHHHHH
Q 000615 1031 DEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL-GH-ESHKLIEY 1102 (1389)
Q Consensus 1031 DEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~~gG~~~~~g~~-~~-~~~~~~~~ 1102 (1389)
|||||.|+......+.+.++++.++|.+||++||.++ |+++.||++.+|. +|+++...+. .+ ..+++++.
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlR-DG~~v~~~~~~~~~~~~~lv~~ 241 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLR-DGRVVGTRPTAAETSEDELVRL 241 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEe-CCEEeeecccccCCCHHHHHHH
Confidence 9999999999999999999999999999999999997 8999999999997 5899988883 43 33445444
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=320.38 Aligned_cols=221 Identities=24% Similarity=0.329 Sum_probs=172.9
Q ss_pred eEEEeccceeeeccccccccccccccceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCC---ceEEEEEEEcC
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTG---GYIEGDIKISG 930 (1389)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~---g~~~G~i~i~g 930 (1389)
.+.++|+++.++ .+.+|+++|++|++||+++|+|+||||||||+++|+|...+ .+.+|+|.++|
T Consensus 45 ~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g 111 (305)
T PRK14264 45 KLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDG 111 (305)
T ss_pred eEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 578888876542 24699999999999999999999999999999999997531 13579999999
Q ss_pred ccCCh-----hhhhheeeEeccCCCCCCCCCHHHHHHHHHHhhcCC---------CCc-HHHHHHHHHHHHHHcCCcccc
Q 000615 931 YPKNQ-----ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS---------DVD-TKKRKMFVDEVMELVELKSLN 995 (1389)
Q Consensus 931 ~~~~~-----~~~~~~~gyv~Q~~~~~~~lTv~E~l~f~~~lr~~~---------~~~-~~~~~~~v~~~l~~l~L~~~~ 995 (1389)
.++.. ...++.++|++|++.+++ .||+||+.+....+... ... .+..++.++++++.+++.+..
T Consensus 112 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 190 (305)
T PRK14264 112 QDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEV 190 (305)
T ss_pred EEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhh
Confidence 87532 234567999999988877 59999999864322100 011 122345688899999884322
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhC
Q 000615 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFD 1075 (1389)
Q Consensus 996 ~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d 1075 (1389)
+.... ..+..||||||||++||++|+.+|+||||||||+|||+.++..+.+.|+++++ +.|||+++|+++ .+.+.+|
T Consensus 191 ~~~~~-~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~i~~~~d 267 (305)
T PRK14264 191 NDRLD-DNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHNMQ-QAARISD 267 (305)
T ss_pred hHHhc-CccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhcC
Confidence 11111 12468999999999999999999999999999999999999999999999976 589999999986 5677899
Q ss_pred eEE-EEecCcEEEEecCC
Q 000615 1076 ELL-LLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1076 ~~l-~l~~gG~~~~~g~~ 1092 (1389)
+++ +|. +|++++.|+.
T Consensus 268 ~i~~~l~-~G~i~~~g~~ 284 (305)
T PRK14264 268 QTAVFLT-GGELVEYDDT 284 (305)
T ss_pred EEEEEec-CCEEEEeCCH
Confidence 975 555 5899999875
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=304.32 Aligned_cols=184 Identities=24% Similarity=0.305 Sum_probs=154.2
Q ss_pred cceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh--hhhhheeeEeccCCCCCCCCC
Q 000615 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ--ETFARVSGYCEQNDIHSPYVT 956 (1389)
Q Consensus 879 ~~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~--~~~~~~~gyv~Q~~~~~~~lT 956 (1389)
++.+|+|+|++|++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ..+++.++|++|++.+++.+|
T Consensus 12 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 12 ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR--PDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC--CCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 3569999999999999999999999999999999999765 347999999986432 234567999999988888899
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCCCC
Q 000615 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1389)
Q Consensus 957 v~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPTsg 1036 (1389)
+.||+.+....+. . + .+.++++++.+++.+..+..+ ..||||||||++||++|+.+|++|+|||||+|
T Consensus 90 v~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~ 157 (198)
T TIGR01189 90 ALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPA-----AQLSAGQQRRLALARLWLSRAPLWILDEPTTA 157 (198)
T ss_pred HHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 9999987643321 1 1 235788999999988776654 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEE
Q 000615 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLL 1079 (1389)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~ 1079 (1389)
||+.++..+++.|++++++|.|||+++|++. + ..+++++.
T Consensus 158 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~--~~~~~~~~ 197 (198)
T TIGR01189 158 LDKAGVALLAGLLRAHLARGGIVLLTTHQDL-G--LVEARELR 197 (198)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEEcccc-c--ccceEEee
Confidence 9999999999999998778999999999874 2 23466553
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-33 Score=298.38 Aligned_cols=158 Identities=30% Similarity=0.418 Sum_probs=141.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEcCccCCh-----hhhhheeeEeccCCCCCCC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-----ETFARVSGYCEQNDIHSPY 954 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~g~~~~~-----~~~~~~~gyv~Q~~~~~~~ 954 (1389)
+.+|+|+|+++++||+++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|++.+++.
T Consensus 13 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 13 KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPH 90 (178)
T ss_pred eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCC
Confidence 469999999999999999999999999999999999765 347999999987532 3456789999999988888
Q ss_pred CCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcccccccccCCCCCCCCHHHHHHHHHHHHHhhCCCCceeeCCC
Q 000615 955 VTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPT 1034 (1389)
Q Consensus 955 lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~illLDEPT 1034 (1389)
.|++|++.+. ||||||||++||++|+.+|++++|||||
T Consensus 91 ~t~~~~l~~~------------------------------------------lS~G~~qr~~la~al~~~p~llilDEP~ 128 (178)
T cd03229 91 LTVLENIALG------------------------------------------LSGGQQQRVALARALAMDPDVLLLDEPT 128 (178)
T ss_pred CCHHHheeec------------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 9999987542 8999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHhC-CCEEEEEecCccHHHHHhhCeEEEEec
Q 000615 1035 SGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1035 sgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~~l~l~~ 1082 (1389)
+|||+.++..+.+.|++++++ |+|+|+++|++. ++.+.+|++++|++
T Consensus 129 ~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~ 176 (178)
T cd03229 129 SALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRD 176 (178)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeC
Confidence 999999999999999999877 899999999976 56668999999985
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=306.93 Aligned_cols=191 Identities=24% Similarity=0.300 Sum_probs=156.5
Q ss_pred ceeeecceeEEeCCeEEEEeccCCCchHHHHhhhcCCCCCceEEEEEEEc--Cc--cCC---hhh---h-hheeeEeccC
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKIS--GY--PKN---QET---F-ARVSGYCEQN 948 (1389)
Q Consensus 880 ~~iL~~vs~~i~~Ge~~al~G~nGaGKTTLl~~L~g~~~~g~~~G~i~i~--g~--~~~---~~~---~-~~~~gyv~Q~ 948 (1389)
+.+|+|+|++|++||+++|+|+||||||||+++|+|...+ .+|+|.++ |. +.. ... . ++.++|++|+
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~--~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~ 98 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP--DSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQF 98 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC--CCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecc
Confidence 4699999999999999999999999999999999997553 46999998 42 321 111 2 3468999999
Q ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHcCCcc-cccccccCCCCCCCCHHHHHHHHHHHHHhhCCCC
Q 000615 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSI 1027 (1389)
Q Consensus 949 ~~~~~~lTv~E~l~f~~~lr~~~~~~~~~~~~~v~~~l~~l~L~~-~~~~~~g~~~~~~LSgGqrqRl~ia~aL~~~p~i 1027 (1389)
+.+++.+||.|++.+..... ........+.+.++++.+++.+ ..+.. +..||||||||++||++|+.+|++
T Consensus 99 ~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LS~G~~qrl~laral~~~p~l 170 (224)
T TIGR02324 99 LRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLP-----PATFSGGEQQRVNIARGFIADYPI 170 (224)
T ss_pred cccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCC-----cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999998764322 1222334456788999999975 33443 457999999999999999999999
Q ss_pred ceeeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCccHHHHHhhCeEEEEe
Q 000615 1028 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1028 llLDEPTsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~~l~l~ 1081 (1389)
|+|||||+|||+.++..+.+.|+++.++|+|||+++|++. .+...+|+++.+.
T Consensus 171 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 171 LLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 9999999999999999999999999877999999999964 3556899988763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=308.82 Aligned_cols=207 Identities=19% Similarity=0.281 Sum_probs=161.7
Q ss_pred ceEeeeeEEEEeCCeEEEEEcCCCCcHHHHHHHHhcCcC--CCCCceeEEEECCeeCCCC-----CcCceEEEecCCCCC
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG--KDLRASGKITYCGHELNEF-----VPQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~~~--~~~~~~G~I~~~G~~~~~~-----~~~~~~~yv~Q~d~~ 256 (1389)
+++|+|+|+++++|++++|+||||||||||+++|+|..+ |....+|+|.++|+++... ..++.++|++|++.+
T Consensus 18 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 18 FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 359999999999999999999999999999999999865 3212389999999987431 124579999999988
Q ss_pred CCCCCHHHHHHHhhhccCCcchhhHHHHhhHHHHhcCCCCChhHHHHHHHHHhhccchhhhHHHHHHHhCCc----cccc
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD----ICAD 332 (1389)
Q Consensus 257 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~lgL~----~~~d 332 (1389)
++ .||+||+.+.....+.... ... ...+...++.+++. +..+
T Consensus 98 ~~-~tv~~nl~~~~~~~~~~~~-------------------~~~--------------~~~~~~~l~~~~l~~~i~~~~~ 143 (252)
T PRK14255 98 FP-FSIYENVIYGLRLAGVKDK-------------------AVL--------------DEAVETSLKQAAIWDEVKDHLH 143 (252)
T ss_pred CC-CcHHHHHHHHHHHcCCCCH-------------------HHH--------------HHHHHHHHHHcCCccchhhHHh
Confidence 87 7999999876432211000 000 00123345555553 3345
Q ss_pred ccccCccccCCChhHhhHHHHHHHHhcCCcEeEEecCCCCCChHHHHHHHHHHHHHHHhCCCeEEEEEecCcchHHhhcC
Q 000615 333 TMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFD 412 (1389)
Q Consensus 333 t~vg~~~~rGLSGGqkqRvsia~al~~~p~illLDEptsgLDs~t~~~i~~~L~~l~~~~~~t~ii~~~q~~~~~~~~~D 412 (1389)
..+++ |||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++.+ +.|+|++.|++ .++.+.+|
T Consensus 144 ~~~~~-----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d 215 (252)
T PRK14255 144 ESALS-----LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISD 215 (252)
T ss_pred cCccc-----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCC
Confidence 55554 999999999999999999999999999999999999999999999865 46777766654 57888999
Q ss_pred eEEEEcCCeEEEecChhHHH
Q 000615 413 DIILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 413 ~iilL~~G~iv~~G~~~~~~ 432 (1389)
+|++|++|+++..|+..++.
T Consensus 216 ~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 216 KTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEEEECCEEEEeCCHHHHh
Confidence 99999999999999988763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1389 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 4e-10 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 8e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-10 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 1e-09 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-09 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-09 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 3e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 4e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 4e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-09 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 4e-09 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 4e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 6e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 7e-09 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-09 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 8e-09 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 8e-09 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-09 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 1e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 1e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 3e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 4e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-08 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 6e-08 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 6e-08 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 5e-07 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-07 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 8e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 9e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 9e-07 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-07 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 3e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-06 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-06 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-06 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-06 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-06 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 6e-06 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 6e-06 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 7e-06 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-06 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-05 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 8e-06 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 8e-06 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 1e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 1e-05 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-05 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 3e-05 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-05 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 5e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-04 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 1e-04 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 3e-04 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 4e-04 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1389 | |||
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 2e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 5e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 8e-16 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-24 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-15 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-23 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-17 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-21 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-15 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-19 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-13 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-12 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-09 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 6e-19 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 8e-11 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-18 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-15 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-13 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 9e-08 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-17 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-14 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 7e-12 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 6e-05 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-17 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 8e-14 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-11 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-07 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 7e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-05 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 2e-15 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-14 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 6e-08 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-08 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 2e-11 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 5e-11 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-10 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-04 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-10 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-05 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-10 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-04 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 4e-09 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-05 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 1e-08 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 6e-04 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-05 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 3e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-08 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-06 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 8e-08 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 1e-04 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 8e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 9e-08 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-07 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 7e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 8e-07 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-06 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-06 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-06 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-06 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-05 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 2e-05 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 6e-05 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-04 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-04 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 2e-04 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 8e-04 |
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 53/237 (22%), Positives = 91/237 (38%), Gaps = 37/237 (15%)
Query: 866 MPAEMKTEGVG---EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG 920
M + E +G + L ++ G + A++G +G GK+TL+D+L G R G
Sbjct: 1 MNKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG 60
Query: 921 YIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLL-----YSAWLRLSSDVDT 975
IE + G+ Q +V + +L + D
Sbjct: 61 KIE--------------VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDY 106
Query: 976 KKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035
+ + ++ + L L + LS QR+ + IA + + +I +DEPTS
Sbjct: 107 QV----AMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1036 GLDARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
LD IV+ + + TVV T HQP+ + ++ LLL + G
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ-VVAIANKTLLLNKQ--NFKFGE 211
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 69.5 bits (171), Expect = 5e-13
Identities = 38/250 (15%), Positives = 83/250 (33%), Gaps = 56/250 (22%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ + ++ + + +LG G GK+TL+ L G GKI E+ +
Sbjct: 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKI-----EVY-----Q 66
Query: 246 TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRY-ELLAELSRREKQAGIKPDPEIDAFM 304
+ ++ Q +V + + GR + + A+ + Q
Sbjct: 67 SIGFVPQFFSSPFAYSVLDIVLM-GR-----STHINTFAKPKSHDYQV------------ 108
Query: 305 KAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVL 364
L L L A +SGGQ++ + + ++
Sbjct: 109 -------------AMQALDYLNLTHLAKREFTS-----LSGGQRQLILIARAIASECKLI 150
Query: 365 YMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVAL--LQPAPETYDLFDDIILLSEGQI 422
+DE ++ LD + + L + ++T++ + + +LL++
Sbjct: 151 LLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVA---IANKTLLLNKQNF 207
Query: 423 VYQGPRDNVL 432
+ G N+L
Sbjct: 208 KF-GETRNIL 216
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 2e-25
Identities = 39/178 (21%), Positives = 72/178 (40%), Gaps = 16/178 (8%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYP--KNQETFARVSGYCE 946
G + L+G +GAGKTT + +++ + + G + + G + ++ Y
Sbjct: 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKPS----SGIVTVFGKNVVEEPHEVRKLISYLP 94
Query: 947 QNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSG 1006
+ + E L + A + + + V+ E+ L V
Sbjct: 95 EEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----T 146
Query: 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
S ++L IA L+ NP + +DEPTSGLD A V + ++ G T++ + H
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSH 204
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 8e-16
Identities = 53/268 (19%), Positives = 84/268 (31%), Gaps = 82/268 (30%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE-- 240
ILK +S ++ + L+GP GAGKTT + ++ + SG +T G + E
Sbjct: 27 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 83
Query: 241 --------FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQA 292
++P+ AY M E L F S E +
Sbjct: 84 HEVRKLISYLPEEAGAY--------RNMQGIEYLRFVAGFYA----------SSSSEIEE 125
Query: 293 GIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT 352
+ + +I GL V S G +++
Sbjct: 126 MV------------------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLL 156
Query: 353 TGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQ 402
L+ + +DE ++GLD ++ K LKQ H +
Sbjct: 157 IARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML--------- 207
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDN 430
E L D I L+ G IV G +
Sbjct: 208 ---EVEFLCDRIALIHNGTIVETGTVEE 232
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 7e-24
Identities = 49/238 (20%), Positives = 89/238 (37%), Gaps = 34/238 (14%)
Query: 866 MPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIE- 923
M M+ + V E L +SG R G + L+G +GAGK+TL+ +AG G I+
Sbjct: 1 MSIVMQLQDVAESTR--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58
Query: 924 GDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
+ + + A Y Q V+ L + K R ++
Sbjct: 59 AGQPLEAWSATK--LALHRAYLSQQQTPPFATPVWHYLTLH---QHD-----KTRTELLN 108
Query: 984 EVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIA-------VELVANPSIIFMDEPTSG 1036
+V + L + LS + +R+ +A + ++ +DEP +
Sbjct: 109 DVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 163
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
LD + + + + G +V + H D+ LLK GG+++ +G
Sbjct: 164 LDVAQQSALDKILSALSQQGLAIVMSSH----DLNHTLRHAHRAWLLK-GGKMLASGR 216
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 51/273 (18%), Positives = 82/273 (30%), Gaps = 90/273 (32%)
Query: 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ 244
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L +
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG----MTSGKGSIQFAGQPLEAWSAT 69
Query: 245 ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
AY+SQ V L + +K E+
Sbjct: 70 KLALHRAYLSQQQTPPFATPVWH-----------------YLTLHQHDKT-----RTEL- 106
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVT-------TG 354
+ V L LD +SGG+ +RV
Sbjct: 107 ----------------LNDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQIT 145
Query: 355 EMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD---------VTMIVALLQPAP 405
+L +DE LD + Q + + ++++
Sbjct: 146 PQANPAGQLLLLDEPMNSLD----------VAQQSALDKILSALSQQGLAIVMSS----- 190
Query: 406 ETYDL------FDDIILLSEGQIVYQGPRDNVL 432
+DL LL G+++ G R+ VL
Sbjct: 191 --HDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 1e-23
Identities = 38/200 (19%), Positives = 78/200 (39%), Gaps = 25/200 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN 948
G + G +G GKTTL+ ++ + +G+I +G P + ++ + +
Sbjct: 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKPL----KGEIIYNGVP-ITKVKGKI-FFLPEE 86
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
I ++V + L A L K K + + +E VE+ L + LS
Sbjct: 87 IIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK------LGELS 135
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1067
+R+ +A L+ N I +D+P +D + V++++ + + G ++ +
Sbjct: 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE--- 192
Query: 1068 IDIFEAFDELLLLKRGGRVI 1087
D L + I
Sbjct: 193 --ELSYCDVNENLHKYSTKI 210
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 36/265 (13%), Positives = 87/265 (32%), Gaps = 60/265 (22%)
Query: 165 NMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224
+ S L + L S +L+ ++ ++ + GP G GKTTL+ ++ L
Sbjct: 5 HHHGSKLEIRDL--SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL 62
Query: 225 LRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAE 284
G+I Y G + + + ++ + + +++V + L GV
Sbjct: 63 ---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGV--------- 108
Query: 285 LSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI- 343
+ + L+ + + ++++ +
Sbjct: 109 -KVNKNEI--------------------------MDALESVEV---------LDLKKKLG 132
Query: 344 --SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALL 401
S G +RV L+ A + +D+ +D + ++ K + +++ + +I
Sbjct: 133 ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS--- 189
Query: 402 QPAPETYDLFDDIILLSEGQIVYQG 426
+ E D L +
Sbjct: 190 --SREELSYCDVNENLHKYSTKIDK 212
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 1e-21
Identities = 47/229 (20%), Positives = 95/229 (41%), Gaps = 35/229 (15%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYPKNQETF 938
+L +S G L G++GAGKTTL+++L T G + + G + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT----SGTVNLFGKMPGKVGY 90
Query: 939 ------ARVSGYCEQNDIHSPY---VTVYESLL---YSA--WLRLSSDVDTKKRKMFVDE 984
+ G+ + + V + ++ + + + D + +
Sbjct: 91 SAETVRQHI-GFVSH-SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE----AHQ 144
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+++LV + + +G LST +++R+ IA L+ P ++ +DEP +GLD A
Sbjct: 145 LLKLVGMSAKAQQYIG-----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199
Query: 1045 VMRTVR--NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
++ + + ++ H +I F ++LLLK G+ I G
Sbjct: 200 LLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGA 246
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 3e-15
Identities = 58/259 (22%), Positives = 95/259 (36%), Gaps = 51/259 (19%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
ILK +S + +L G GAGKTTL+ L SG + G +
Sbjct: 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGY 90
Query: 244 Q----RTC-AYISQ--HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
R ++S + V + + SG +G Y+
Sbjct: 91 SAETVRQHIGFVSHSLLEKFQEGERVIDVV-ISGAFKSIG-VYQ--------------DI 134
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
D E ++ A +LK++G+ A +G +S G+K+RV
Sbjct: 135 DDE----IRNEA----------HQLLKLVGMSAKAQQYIGY-----LSTGEKQRVMIARA 175
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILD-VTMIVAL--LQPAPETYDLFDD 413
L+G VL +DE + GLD + L + + MI ++ F
Sbjct: 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITA---NFSK 232
Query: 414 IILLSEGQIVYQGPRDNVL 432
I+LL +GQ + QG +++L
Sbjct: 233 ILLLKDGQSIQQGAVEDIL 251
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 2e-19
Identities = 44/224 (19%), Positives = 80/224 (35%), Gaps = 35/224 (15%)
Query: 846 MILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQ------LLHSVSGVFRPGVLTALM 899
L F+ +L F D+ + + L+ +L+ G F + +M
Sbjct: 325 ENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMM 384
Query: 900 GVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTV 957
G +G GKTTL+ +LAG + G + +S P+ TV
Sbjct: 385 GENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQK-------IAPKFPG-------TV 430
Query: 958 YESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTI 1017
+ L F +V++ + + + D V LS + +R+ I
Sbjct: 431 RQ-------LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAI 478
Query: 1018 AVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1060
+ L I +DEP++ LD+ I + +R + +T
Sbjct: 479 VLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-13
Identities = 37/183 (20%), Positives = 74/183 (40%), Gaps = 21/183 (11%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEG---DIKISGYPKNQETFARVSGYC 945
RPG + L+G +G GK+T + +LAG + G + +I Y + E +
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160
Query: 946 EQND---IHSPYV-----TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
E + I YV + + L + +K V +++++L+++
Sbjct: 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELL---KLRMEKSPEDVKRYIKILQLENVLKR 217
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1057
+ LS + +R I + V + DEP+S LD + + +R+ + +
Sbjct: 218 DI-----EKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTK 272
Query: 1058 TVV 1060
V+
Sbjct: 273 YVI 275
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 6e-12
Identities = 44/220 (20%), Positives = 72/220 (32%), Gaps = 56/220 (25%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
K + +L G S + +++G G GKTTL+ LAG L D G+
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------- 409
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+P+ + Q TVR+ + + + Q
Sbjct: 410 ---IPKLNVSMKPQKIAPKFPGTVRQLFFKK-----------IRGQFLNPQFQ------- 448
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
V+K L +D D V +SGG+ +RV L
Sbjct: 449 --------------------TDVVKPLRIDDIIDQEVQH-----LSGGELQRVAIVLALG 483
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
A++ +DE S LDS K +++ + T +
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFI 523
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 1e-09
Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 71/263 (26%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ +P ++ L+G G GK+T + LAGK +L G+
Sbjct: 89 ANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNL---GRFD---------- 135
Query: 243 PQRTCAYISQHDLHHGEMTVRETLD-FSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+E + F G L + L K IKP +D
Sbjct: 136 ---------------DPPEWQEIIKYFRGSEL----QNYFTKMLEDDIKAI-IKP-QYVD 174
Query: 302 AFMKAV-----------AVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI---SGGQ 347
+A+ + +++ +KIL L+ + ++R I SGG+
Sbjct: 175 NIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLE--------NVLKRDIEKLSGGE 226
Query: 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407
+R G V A+V DE S+ LD + ++ ++ +I
Sbjct: 227 LQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICV-------E 278
Query: 408 YDLF------DDIILLSEGQIVY 424
+DL D + ++ VY
Sbjct: 279 HDLSVLDYLSDFVCIIYGVPSVY 301
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 87.4 bits (217), Expect = 6e-19
Identities = 36/206 (17%), Positives = 77/206 (37%), Gaps = 31/206 (15%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG-RKTGGYIEGDIKISGYPKNQETFARVSGYCEQN-D 949
G ++G +G+GKTTL+ ++G G+I I+G Y +
Sbjct: 29 NGEKVIILGPNGSGKTTLLRAISGLLPY----SGNIFING--MEVRKIRNYIRYSTNLPE 82
Query: 950 IHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-KSLNDSMVGLPGVSGLS 1008
+ VTV + + L+ + E+++ ++L + + + LS
Sbjct: 83 AYEIGVTVNDIVYLYEELK-------GLDRDLFLEMLKALKLGEEILRRKL-----YKLS 130
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1068
Q + ++ L + P I+ +DEP +DA ++ R ++ + G+ + H
Sbjct: 131 AGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTH---- 183
Query: 1069 DIFEAF---DELLLLKRGGRVIYAGP 1091
++ + G R+
Sbjct: 184 ELDMLNLYKEYKAYFLVGNRLQGPIS 209
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 8e-11
Identities = 43/264 (16%), Positives = 82/264 (31%), Gaps = 68/264 (25%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K L++++ V ++LGP G+GKTTL+ A++G L SG I G E
Sbjct: 12 SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISG-LLPY---SGNIFINGME 66
Query: 238 LNEFVPQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP 296
+ + R + + +TV + + G+
Sbjct: 67 VRKIRNYIRYSTNLPEAYEIG--VTVNDIVYLYEELKGL--------------------D 104
Query: 297 DPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEM 356
+KA+ L + + +S GQ V T
Sbjct: 105 RDLFLEMLKAL-------KLGEEI----------LRRKLYK-----LSAGQSVLVRTSLA 142
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYD------L 410
L ++ +DE +D++ I +++K+ I+ T++
Sbjct: 143 LASQPEIVGLDEPFENVDAARRHVISRYIKE----YGKEGILV-------THELDMLNLY 191
Query: 411 FDDIILLSEGQIVYQ-GPRDNVLE 433
+ G + +LE
Sbjct: 192 KEYKAYFLVGNRLQGPISVSELLE 215
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 4e-18
Identities = 45/181 (24%), Positives = 75/181 (41%), Gaps = 29/181 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L G R G + ++G +G GKTT + +LAG T G +E D+ ++
Sbjct: 372 LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVA----------- 420
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Y Q TVYE L D + E+++ + + L D V
Sbjct: 421 ---YKPQYIKAEYEGTVYELLS-------KIDSSKLNSNFYKTELLKPLGIIDLYDRNV- 469
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1059
LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 470 ----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 525
Query: 1060 V 1060
+
Sbjct: 526 L 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 5e-15
Identities = 61/302 (20%), Positives = 107/302 (35%), Gaps = 82/302 (27%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
K L+ G ++ + ++GP G GKTT + LAG GK+ +
Sbjct: 363 LVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEWDLTV 419
Query: 238 LNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ PQ YI E TV E LL+++ + +
Sbjct: 420 A--YKPQ----YIKAEY----EGTVYE----------------LLSKIDSSKLNSNFY-- 451
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
T+ +LK LG+ D V D +SGG+ +RV L
Sbjct: 452 -------------------KTE-LLKPLGIIDLYDRNVED-----LSGGELQRVAIAATL 486
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------ 411
+ A++ +DE S LD + + ++ ++ + T +V +D+
Sbjct: 487 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVS 539
Query: 412 DDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKN 469
D +I+ EG+ G + R+G+ FL +T ++D + R N
Sbjct: 540 DRLIVF-EGEPGRHGRALPPM----------GMREGMNRFLASVGITFRRDPDSGRPRAN 588
Query: 470 QP 471
+
Sbjct: 589 KE 590
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 2e-13
Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKN--Q 935
+L+ + V + G++ ++G +G GKTT + +LAG+ D I + N Q
Sbjct: 107 VLYRLPIV-KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQ 165
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
F R+ + + YV + + L VD + +EV++ +EL+++
Sbjct: 166 NYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGK---FEEVVKELELENVL 222
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D + LS + +R+ IA L+ F DEP+S LD R V R +R +
Sbjct: 223 DRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANE 277
Query: 1056 GRTVV 1060
G+ V+
Sbjct: 278 GKAVL 282
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 9e-08
Identities = 48/259 (18%), Positives = 84/259 (32%), Gaps = 72/259 (27%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL---RASGKITYCGHELNE 240
+ IVK + ++GP G GKTT + LAG+L +L S NE
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163
Query: 241 FVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKP-DPE 299
+ +
Sbjct: 164 ---------------------------------------LQNYFERLKNGEIRPVVKPQY 184
Query: 300 IDAFMKAVAVAGQETSLVT--------DYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+D K AV G+ L+ + V+K L L+ D + +SGG+ +RV
Sbjct: 185 VDLLPK--AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQ-----LSGGELQRV 237
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L+ A+ + DE S+ LD ++ + ++++ + ++V +DL
Sbjct: 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVV-------EHDLA 289
Query: 412 ------DDIILLSEGQIVY 424
D I ++ VY
Sbjct: 290 VLDYLSDVIHVVYGEPGVY 308
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 2e-17
Identities = 45/181 (24%), Positives = 76/181 (41%), Gaps = 29/181 (16%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L G + G + ++G +G GKTT + +LAG T G IE D+ ++
Sbjct: 302 LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVA----------- 350
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
Y Q TVYE L D + E+++ + + L D V
Sbjct: 351 ---YKPQYIKADYEGTVYELLS-------KIDASKLNSNFYKTELLKPLGIIDLYDREV- 399
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTV 1059
+ LS + +R+ IA L+ + I +DEP++ LD V R +R+ ++ +T
Sbjct: 400 ----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTA 455
Query: 1060 V 1060
+
Sbjct: 456 L 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 2e-14
Identities = 62/301 (20%), Positives = 108/301 (35%), Gaps = 82/301 (27%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
K L+ G +K + ++GP G GKTT + LAG GKI +
Sbjct: 294 VKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEWDLTVA 350
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ PQ YI E TV YELL+++ + +
Sbjct: 351 --YKPQ----YIKAD----YEGTV----------------YELLSKIDASKLNSNFY--- 381
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
T+ +LK LG+ D V + +SGG+ +RV L+
Sbjct: 382 ------------------KTE-LLKPLGIIDLYDREVNE-----LSGGELQRVAIAATLL 417
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------D 412
A++ +DE S LD + + ++ ++ + T +V +D+ D
Sbjct: 418 RDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV-------EHDVLMIDYVSD 470
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKNQ 470
+++ EG+ G + R+G+ FL +T ++D + R N+
Sbjct: 471 RLMVF-EGEPGKYGRALPPM----------GMREGMNRFLASIGITFRRDPDTGRPRANK 519
Query: 471 P 471
Sbjct: 520 E 520
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 7e-12
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 22/180 (12%)
Query: 891 RPGVLTALMGVSGAGKTTLMDVLAGR----KTGGYIEGDIKISGYPKN--QETFARVSGY 944
+ G++ ++G +G GK+T + +LAG+ G D I + N Q F ++
Sbjct: 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN- 103
Query: 945 CEQNDIH----SPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+I YV + + + L D + ++EV++ +EL+++ +
Sbjct: 104 ---GEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGK---LEEVVKALELENVLER--- 154
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
+ LS + +R+ IA L+ N + F DEP+S LD R R +R + G++V+
Sbjct: 155 --EIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVL 212
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 6e-05
Identities = 47/258 (18%), Positives = 85/258 (32%), Gaps = 76/258 (29%)
Query: 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTC 247
+VK + ++GP G GK+T + LAG+L
Sbjct: 38 LYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL-------------------------- 71
Query: 248 AYISQHDLHHGEMTVRETLD-FSGRCLGVGTRYELLAELSR-REKQAGIKP-DPEIDAFM 304
+L + + F G EL + + + +D +
Sbjct: 72 ----IPNLCGDNDSWDGVIRAFRGN--------ELQNYFEKLKNGEIRPVVKPQYVD--L 117
Query: 305 KAVAVAGQETSLVT--------DYVLKILGLDICADTMVGDEMRRGI---SGGQKKRVTT 353
AV G+ L+ + V+K L L+ + + R I SGG+ +RV
Sbjct: 118 IPKAVKGKVIELLKKADETGKLEEVVKALELE--------NVLEREIQHLSGGELQRVAI 169
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF-- 411
L+ A + DE S+ LD + ++++ +++V +DL
Sbjct: 170 AAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVV-------EHDLAVL 221
Query: 412 ----DDIILLSEGQIVYQ 425
D I ++ VY
Sbjct: 222 DYLSDIIHVVYGEPGVYG 239
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 3e-17
Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 26/183 (14%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L +G + G + ++G +G GKTT +L G G + + +I Y K Q F
Sbjct: 284 LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIFP- 341
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+ TV + +L +S F +EV + + L L +S V
Sbjct: 342 -----------NYDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV- 383
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVV 1060
+ LS + ++L IA L + +D+P+S LD IV + ++ + V
Sbjct: 384 ----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVT 439
Query: 1061 CTI 1063
I
Sbjct: 440 FII 442
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 8e-14
Identities = 61/301 (20%), Positives = 106/301 (35%), Gaps = 80/301 (26%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
KK L +G K + +LGP G GKTT L G++ D G +T L
Sbjct: 276 IKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEKQIL 332
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+Y Q + + TV++ L+
Sbjct: 333 ---------SYKPQRIFPNYDGTVQQYLE------------------------------- 352
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
A A +S + V K L L ++ V D +SGG+ +++ L
Sbjct: 353 ------NASKDALSTSSWFFEEVTKRLNLHRLLESNVND-----LSGGELQKLYIAATLA 401
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------D 412
A++ +D+ S+ LD + + K +K++ + +DL D
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII-------DHDLSIHDYIAD 454
Query: 413 DIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQE--VTSKKDQEQYWFRKNQ 470
II+ +G+ G + + + G+ +FL+E VT ++D E R N+
Sbjct: 455 RIIVF-KGEPEKAGLATSPVTL----------KTGMNEFLRELEVTFRRDAETGRPRVNK 503
Query: 471 P 471
Sbjct: 504 I 504
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 1e-11
Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 25/188 (13%)
Query: 889 VFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGY---- 944
+ + ++G +G GKTT++ +LAG + + + K E R G
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSK----VGKDEVLKRFRGKEIYN 76
Query: 945 -------CEQNDIHSPYVTVYESLLYSAWLR-LSSDVDTKKRKMFVDEVMELVELKSLND 996
E +H Y S + + + +D + + DEV EL+ + +L +
Sbjct: 77 YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGK---KDEVKELLNMTNLWN 133
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ LS +RL +A L+ + D+P+S LD R + + +R +
Sbjct: 134 -----KDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-N 187
Query: 1057 RTVVCTIH 1064
+ V+ H
Sbjct: 188 KYVIVVDH 195
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 3e-09
Identities = 53/329 (16%), Positives = 107/329 (32%), Gaps = 65/329 (19%)
Query: 187 LKDVS-GIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
K K + + +LG G GKTT++ LAG++ + E+ + +
Sbjct: 14 FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNF-GDPNSKVGKDEVLKRFRGK 72
Query: 246 TCAYISQHDLHHGEMTVR--ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAF 303
+ + V + ++++ + L GT E+L ++ R K
Sbjct: 73 EIYNYFKELYSNELKIVHKIQYVEYASKFLK-GTVNEILTKIDERGK------------- 118
Query: 304 MKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANV 363
D V ++L + + +SGG +R+ L+ A+V
Sbjct: 119 --------------KDEVKELLNMTNLWNKDANI-----LSGGGLQRLLVAASLLREADV 159
Query: 364 LYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF------DDIILL 417
D+ S+ LD + K +++++ + +IV +DL D I ++
Sbjct: 160 YIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVV-------DHDLIVLDYLTDLIHII 210
Query: 418 SEGQIVYQGPRD--NVLEFF----------EHMGFKCPERKGVADFLQEVTSKKDQEQYW 465
VY E+M + E K + + ++ KD +
Sbjct: 211 YGESSVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKM 270
Query: 466 FRKNQPYRYIPVSDFVEGFKSFHMGQQIA 494
+ V+ G+ I
Sbjct: 271 KWTKIIKKLGDFQLVVDNG-EAKEGEIIG 298
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 55/211 (26%), Positives = 105/211 (49%), Gaps = 24/211 (11%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIK 927
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 928 ISGYPKNQETFAR--VSGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSDVDTKKRK 979
+ ++ T R G+ Q N I P +T E+ L++ + + ++R+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLI--PLLTALENVELPLIF----KYRGAMSGEERR 122
Query: 980 MFVDEVMELVELKSLNDSMVG-LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
E +++ EL+ + P + LS Q++R+ IA L NP II D+PT LD
Sbjct: 123 KRALECLKMAELE---ERFANHKP--NQLSGGQQQRVAIARALANNPPIILADQPTWALD 177
Query: 1039 ARAAAIVMRTVRN-TVDTGRTVVCTIHQPSI 1068
++ +M+ ++ + G+TVV H ++
Sbjct: 178 SKTGEKIMQLLKKLNEEDGKTVVVVTHDINV 208
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 83.4 bits (205), Expect = 4e-16
Identities = 102/693 (14%), Positives = 194/693 (27%), Gaps = 203/693 (29%)
Query: 45 FSRSERQ----DDEEELRWAAIERLPTYDRLKKGMLNQVLEDGKVVKHEVDVSNLAVQDK 100
F E Q D A ++ D M +L + + H + + AV
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSK-EEIDHIIMSKD-AVSGT 64
Query: 101 KRLLESIL----KIVE-------EDNEKFLK-RIRHRT-DRVGIEIPKIEVRYDHLSVEG 147
RL ++L ++V+ N KFL I+ + IE R D L
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR-DRL--YN 121
Query: 148 DVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPG 207
D V + NV + L+ L L ++++ L+ ++ + G G
Sbjct: 122 DNQVFAK-----YNV--SRLQPYLKL-------RQALLELRPAKNVL-------IDGVLG 160
Query: 208 AGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLD 267
+GKT + L + + KI + + +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFW--------------------------LNL----- 189
Query: 268 FSGRCLGVGTRYELLAELSRR-EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326
C T E+L +L + + + D + ++ ++ + L+ +
Sbjct: 190 --KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN-C 246
Query: 327 LDICADTMVGD-EMRRGISGGQKKRVTTGEMLV------GTANVLYMDEISTGLDSSTTF 379
L + + V + + + K +TT V T + +D S L
Sbjct: 247 LLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 380 QIC-KFL--------KQMVHI--LDVTMIVALLQPAPETYDLFDD--------IILLS-- 418
+ K+L ++++ +++I ++ T+D + II S
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 419 -----EGQIVYQG----PRD-----NVLEFF-EHMGFKCPERKGVADFLQEVTSKKDQEQ 463
E + ++ P +L + + ++ E
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM-----VVVNKLHKYSLVE- 418
Query: 464 YWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWEL 523
++ + S +L+V + A S+V + Y I K
Sbjct: 419 ---KQPKESTI-----------SIPSIYL---ELKVKLENEYALHRSIV-DHYNIPK--- 457
Query: 524 FRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGALFFS 583
F L+ Y + + + + F +F
Sbjct: 458 ---TF-DSDDLIPPYLDQYFYS--------------HIGHHLKNIEHPERMTLFRMVFLD 499
Query: 584 LLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTY 643
F E K R H A SIL+ T+ Y
Sbjct: 500 F------RFLEQ-----------KIR-HDSTAWNA----------SGSILN-TLQQLKFY 530
Query: 644 --YTIGYDPAASRFFKQFLAFFSIHNMSLPLYR 674
Y DP R L F + + L
Sbjct: 531 KPYICDNDPKYERLVNAILDF--LPKIEENLIC 561
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 3e-07
Identities = 55/391 (14%), Positives = 110/391 (28%), Gaps = 139/391 (35%)
Query: 879 RLQLLHSVSGVF---RPGVLTALMGVSGAGKTTL-MDVLAGRKTGGYIEGDIKISGYPKN 934
RLQ + RP + GV G+GKT + +DV K+
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL----------SYKV------ 176
Query: 935 QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
Q I WL L + + V+E+ L+ L
Sbjct: 177 QCKMD--------FKIF--------------WLNLKNCNSP-------ETVLEM--LQKL 205
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEP-TSGLDARAAAIVMRTVRNTV 1053
+ S +L I + A + +P + L +V+ V+N
Sbjct: 206 L-YQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL------LVLLNVQNA- 256
Query: 1054 DTGRTVVCTIHQPSIDIFEAFD---ELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVP 1110
+ AF+ ++LL R +V +H ++
Sbjct: 257 ---------------KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD--------- 292
Query: 1111 KIKEAYNPATWMLEVSNISVENQLGIDFAEVYADSSLHQRNKELIKELSTPPPGSSDLYF 1170
P + + + L R ++L +E+ T P +
Sbjct: 293 HHSMTLTP------------DEVKSL-LLKY-----LDCRPQDLPREVLTTNPRRLSI-I 333
Query: 1171 PTKYSQPFLTQFRACFWKQYWSYWRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQD 1230
T W W++ + +T +I ++ + +
Sbjct: 334 AESIRDGLAT----------WDNWKHVNCDK----LTTIIESSLNVL---------EPAE 370
Query: 1231 LQNLFGAMYSICIFLGTSNAISVIP--VICV 1259
+ +F + +F +++ IP ++ +
Sbjct: 371 YRKMF---DRLSVFPPSAH----IPTILLSL 394
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 7e-16
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 28/218 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L +VS V G + G +G+GK+TL+ ++AG T GD+ G K R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT----SGDVLYDGERKKGYEIRR 78
Query: 941 VSGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
G Q P V++ + ++ D D V + ME V L
Sbjct: 79 NIGIAFQY----PEDQFFAERVFDEVAFAV-KNFYPDRDPVPL---VKKAMEFVGL---- 126
Query: 996 DSMVGLPGVS--GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
LS +++R+ IA +V P I+ +DEP GLD ++R V
Sbjct: 127 -DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK 185
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G+TV+ H + D +++L++ G+ ++ G
Sbjct: 186 TLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGT 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 8/96 (8%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---L 400
SGG+K+RV ++V ++L +DE GLD + + +++ L T+I+ +
Sbjct: 140 SGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW-KTLGKTVILISHDI 198
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFE 436
+ D +++L +G+ V+ G R LE ++
Sbjct: 199 ----ETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 76.0 bits (188), Expect = 2e-15
Identities = 45/200 (22%), Positives = 83/200 (41%), Gaps = 25/200 (12%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGG-YIEGDIKISGYPKNQE 936
++L +S + G +++G SG+GK+TL+ +L T G ++ + +
Sbjct: 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKEL 76
Query: 937 TFAR--VSGYCEQ--NDIHSPYVTVYES----LLYSAWLRLSSDVDTKKRKMFVDEVMEL 988
+ R G+ Q I P +T E+ +L K+ K + ++
Sbjct: 77 SLLRNRKLGFVFQFHYLI--PELTALENVIVPMLKM-------GKPKKEAKERGEYLLSE 127
Query: 989 VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L D + P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 128 LGLG---DKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 1049 VRNTVDTGRTVVCTIHQPSI 1068
+ G ++V H+ +
Sbjct: 183 FLKINEGGTSIVMVTHEREL 202
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 1e-14
Identities = 56/230 (24%), Positives = 93/230 (40%), Gaps = 47/230 (20%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L ++ + G +TA++G +G GK+TL G + + G I + I K
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 940 RVSGYCEQNDIHSP-----YVTVYESLLYSAWLRLSSDV------------DTKKRKMFV 982
G Q+ P +VY+ DV + +KR V
Sbjct: 84 ESIGIVFQD----PDNQLFSASVYQ------------DVSFGAVNMKLPEDEIRKR---V 124
Query: 983 DEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
D ++ ++ L D LS Q+KR+ IA LV P ++ +DEPT+GLD
Sbjct: 125 DNALKRTGIEHLKDKPTHC-----LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 1043 AIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ +M+ + + G T++ H + D + ++K GRVI G
Sbjct: 180 SEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGN 227
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 6e-08
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 10/117 (8%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVA---L 400
S GQKKRV +LV VL +DE + GLD +I K L +M L +T+I+A +
Sbjct: 145 SFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI 204
Query: 401 LQPAPETYDLFDDIILLSEGQIVYQGPRDNVL---EFFEHMGFKCPERKGVADFLQE 454
D++ ++ EG+++ QG V E + + P + + L+E
Sbjct: 205 ----DIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRLPRIGHLMEILKE 257
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 6e-12
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 40/203 (19%)
Query: 883 LHSVSGV---FRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQ- 935
++ GV G +T ++G +G+GK+TL++V+ G + G + + I+ +
Sbjct: 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 79
Query: 936 ------ETFARVSGYCEQNDIHS-PYVTVYE-----------SLLYSAWLRLSSDVDTKK 977
TF Q +TV E S L S + + + +
Sbjct: 80 YHYGIVRTF--------QT-PQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM 130
Query: 978 RKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1037
+ +++E ++L L D G LS Q K + I L+ NP +I MDEP +G+
Sbjct: 131 VEK-AFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 184
Query: 1038 DARAAAIVMRTVRNTVDTGRTVV 1060
A + V G T +
Sbjct: 185 APGLAHDIFNHVLELKAKGITFL 207
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 5e-08
Identities = 59/255 (23%), Positives = 94/255 (36%), Gaps = 55/255 (21%)
Query: 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRT 246
L VS V +TL++GP G+GK+TL+ + G L D G++ + ++ P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 247 CAY-IS---QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
Y I Q EMTV E L C G L + ++ E +
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPG---ESPLNSLFYKKWIPK------EEEM 130
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
KA +L+ L L D G+ +SGGQ K V G L+
Sbjct: 131 VEKAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMV----------HILDVTMIVALLQPAPETYDLFD 412
++ MDE G+ I + ++ H LD+ + + D
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL------------NYID 221
Query: 413 DIILLSEGQIVYQGP 427
+ ++ GQI+ +G
Sbjct: 222 HLYVMFNGQIIAEGR 236
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 2e-11
Identities = 40/147 (27%), Positives = 73/147 (49%), Gaps = 17/147 (11%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSP 953
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+ P
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQDYALFP 83
Query: 954 YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013
+++VY ++ Y LR V+ +R V E+ E + + L D + LS +R+
Sbjct: 84 HLSVYRNIAYG--LRNVERVERDRR---VREMAEKLGIAHLLDRKP-----ARLSGGERQ 133
Query: 1014 RLTIAVELVANPSIIFMDEPTSGLDAR 1040
R+ +A LV P ++ +DEP S +D +
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLK 160
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 5e-11
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 54/232 (23%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIKI 928
D + L VS PG AL+G SGAGK+T++ D+ +G I+G DI
Sbjct: 64 ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIR---IDGQDIS- 119
Query: 929 SGYPKNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFV 982
Q + G Q ND T+ +++ Y R++ +
Sbjct: 120 ---QVTQASLRSHIGVVPQDTVLFND------TIADNIRYG---RVTAGN---------- 157
Query: 983 DEVMELVELKSLNDSMVGLP----------GVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
DEV + ++D+++ P G+ LS +++R+ IA ++ P II +DE
Sbjct: 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDE 216
Query: 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
TS LD + ++ V RT + H+ S + A D++L++K G
Sbjct: 217 ATSALDTSNERAIQASL-AKVCANRTTIVVAHRLST-VVNA-DQILVIKDGC 265
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 64.3 bits (156), Expect = 3e-10
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 30/165 (18%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYPKNQETFA 939
LL+ + + G +G GK+TLM +A + G+ + + +
Sbjct: 449 ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRT----------- 497
Query: 940 RVSGYCEQN-DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
Y E + D +V + + S V TK+ + + + D M
Sbjct: 498 ---VYVEHDIDGTHSDTSVLDFV-------FESGVGTKEA---IKDKLIEFGFT---DEM 541
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043
+ +P +S LS + +L +A ++ N I+ +DEPT+ LD A
Sbjct: 542 IAMP-ISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVA 585
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-05
Identities = 28/116 (24%), Positives = 48/116 (41%), Gaps = 12/116 (10%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+ D++ S ++GP GAGK+TL+ L G+L SG++ Y
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT---SGEV-YTHENC------- 736
Query: 246 TCAYISQHDLHHGEMTVRET-LDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
AYI QH H E + +T ++ G E + +R+ + + +I
Sbjct: 737 RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKI 792
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 9e-05
Identities = 53/386 (13%), Positives = 110/386 (28%), Gaps = 101/386 (26%)
Query: 101 KRLLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLL 160
K ++E I I + ++ + + + + + + +
Sbjct: 364 KIVVEYIAAIGADLIDERIIDQQAWFTHITPYMTIFLHEKKAKDILDEFRKRAVDNIPVG 423
Query: 161 NVALNMLESALGLLHLVPSKKRSVR-ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219
+ + L + S + +L +K +R + GP G GK+TLM A+A
Sbjct: 424 PNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483
Query: 220 KL--GKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGT 277
G + + Y H++ D H + +V + +
Sbjct: 484 GQVDGFPTQEECRTVYVEHDI---------------DGTHSDTSVLDFV-----FESGVG 523
Query: 278 RYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337
E + + L G +
Sbjct: 524 TKEAIKD------------------------------------KLIEFGFTD-------E 540
Query: 338 EMRRGI---SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDV 394
+ I SGG K ++ ++ A++L +DE + LD+ + +L
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITS-- 598
Query: 395 TMIVALLQPAPETYDLF------DDIILLSEGQIV-YQGPRDNVLEFFEHMGFKCPERKG 447
+ + ++D + II ++ Y+G N EF + KCP K
Sbjct: 599 -ITI--------SHDSVFLDNVCEYIINYEGLKLRKYKG---NFTEFVK----KCPAAK- 641
Query: 448 VADFLQEVTSKKDQEQYWFRKNQPYR 473
+ + + Y
Sbjct: 642 ------AYEELSNTDLEFKFPEPGYL 661
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 8e-04
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
+ GLS Q+ +L +A P +I +DEPT+ LD
Sbjct: 899 IRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 5e-10
Identities = 49/223 (21%), Positives = 85/223 (38%), Gaps = 72/223 (32%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKI 928
D +L +++ + G + ++G SG+GK+TL G+ + I
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ---------VLI 68
Query: 929 SGY------PK---------NQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSS 971
G+ P Q+ R ++ +++ +
Sbjct: 69 DGHDLALADPNWLRRQVGVVLQDNVLLNR---------------SIIDNISLA------- 106
Query: 972 DVDTKKRKMFVDEVME----------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVEL 1021
M V++V+ + EL+ +++VG G LS QR+R+ IA L
Sbjct: 107 -----NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG-LSGGQRQRIAIARAL 160
Query: 1022 VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
V NP I+ DE TS LD + ++MR + GRTV+ H
Sbjct: 161 VNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 5e-05
Identities = 53/255 (20%), Positives = 102/255 (40%), Gaps = 67/255 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL +++ +K + ++G G+GK+TL + R +G++ GH+L
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI-------QRFYIPENGQVLIDGHDLALA 76
Query: 242 VPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P R + Q + + + S + + P
Sbjct: 77 DPNWLRRQVGVVLQ-----------DNVLLNR---------------SIIDNISLANPGM 110
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGEM 356
++ + A +AG D+ I L +T+VG+ +G SGGQ++R+
Sbjct: 111 SVEKVIYAAKLAG-----AHDF---ISELREGYNTIVGE---QGAGLSGGQRQRIAIARA 159
Query: 357 LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDLF 411
LV +L DE ++ LD + I + + ++ T+I+ + ++ A
Sbjct: 160 LVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRLSTVKNA------- 210
Query: 412 DDIILLSEGQIVYQG 426
D II++ +G+IV QG
Sbjct: 211 DRIIVMEKGKIVEQG 225
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 45/228 (19%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY-IEGDIKISGYP-- 932
+ + L S++ G AL+G +G+GK+T+ +L R Y EGDIKI G
Sbjct: 29 KQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLY-RF---YDAEGDIKIGGKNVN 84
Query: 933 -KNQETFARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDEV 985
N+ + + G Q N+ T+ ++LY +L +D +EV
Sbjct: 85 KYNRNSIRSIIGIVPQDTILFNE------TIKYNILYG---KLDATD----------EEV 125
Query: 986 MELVELKSLNDSMVGLP-------GVSG--LSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036
++ + L D + LP G G LS +R+R+ IA L+ +P I+ DE TS
Sbjct: 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
LD++ + + V + + RT++ H+ S I A + ++LL +G
Sbjct: 186 LDSKTEYLFQKAVED-LRKNRTLIIIAHRLST-ISSA-ESIILLNKGK 230
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 29/109 (26%), Positives = 59/109 (54%), Gaps = 19/109 (17%)
Query: 332 DTMVGDEMRRGI--SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMV 389
DT+VG+ +G+ SGG+++R+ L+ ++ DE ++ LDS T + K ++ +
Sbjct: 146 DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR 202
Query: 390 HILDVTMIV-----ALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
+ T+I+ + + A + IILL++G+IV +G ++L+
Sbjct: 203 K--NRTLIIIAHRLSTISSA-------ESIILLNKGKIVEKGTHKDLLK 242
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 15/161 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
+ VS R G + L+G SG+GKTT++ ++AG R T G + G +++ P +
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQK---- 86
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
R G QN ++TVY+++ + + + R V E++ + L+S +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDAR---VRELLRFMRLESYANRFP 143
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
LS Q++R+ +A L P ++ DEP + +D +
Sbjct: 144 -----HELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQ 179
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 4e-09
Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 37/224 (16%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKIS 929
+D Q+L +S +P + A G SG GK+T+ AG I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE---------ITID 62
Query: 930 GYP---KNQETFARVSGYCEQNDIHSPYV---TVYESLLYSAWLRLS-SDVDTKKRKMFV 982
G P + E + G+ Q+ + T+ E+L Y + D+ F
Sbjct: 63 GQPIDNISLENWRSQIGFVSQD----SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFA 118
Query: 983 DE-VMELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
V + + L ++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+
Sbjct: 119 RSFVENMPDQL----NTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSE 173
Query: 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+ ++V + + +++ GRT + H+ S I +A D++ +++G
Sbjct: 174 SESMVQKAL-DSLMKGRTTLVIAHRLST-IVDA-DKIYFIEKGQ 214
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 1e-05
Identities = 55/256 (21%), Positives = 99/256 (38%), Gaps = 68/256 (26%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLR----ASGKITYCGHELNEF 241
IL+D+S +P+ + GP G GK+T+ L R +G+IT G ++
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL-------ERFYQPTAGEITIDGQPIDNI 69
Query: 242 VPQ---RTCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ ++SQ + G T+RE L Y G++ D
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG--TIRENL-----------TY-------------GLEGD 103
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI--SGGQKKRVTTGE 355
+ + + +A + + + +T VG+ RG+ SGGQ++R+
Sbjct: 104 YTDEDLWQVLDLAF-----ARSF---VENMPDQLNTEVGE---RGVKISGGQRQRLAIAR 152
Query: 356 MLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV-----ALLQPAPETYDL 410
+ +L +DE + LDS + + K L ++ T +V + + A
Sbjct: 153 AFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRLSTIVDA------ 204
Query: 411 FDDIILLSEGQIVYQG 426
D I + +GQI G
Sbjct: 205 -DKIYFIEKGQITGSG 219
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 22/167 (13%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARV 941
L +V+ G ++G SGAGKTT M ++AG G++ V
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKLIV 77
Query: 942 SGYCEQNDIHS--------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
E I P +T +E++ + S + +KR V+EV +++++
Sbjct: 78 PP--EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHH 132
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+ + P LS Q++R+ +A LV +PS++ +DEP S LDAR
Sbjct: 133 VLNHF---P--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDAR 174
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 6e-04
Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 64/229 (27%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRA--SGKITYCGHELNE 240
V L +V+ ++ +LGP GAGKTT M +AG L +G++ + +
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-----LDVPSTGELYFDDRLVAS 71
Query: 241 ----FVP--QRTCAYISQ------HDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288
VP R + Q + +T E + F + +
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPN------LTAFENIAFPLTNMKM------------- 112
Query: 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQK 348
EI ++ VA KIL + V + R +SG Q+
Sbjct: 113 -------SKEEIRKRVEEVA--------------KILDI-----HHVLNHFPRELSGAQQ 146
Query: 349 KRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMI 397
+RV LV ++L +DE + LD+ +K++ L VT++
Sbjct: 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLL 195
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 58/257 (22%), Positives = 102/257 (39%), Gaps = 70/257 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + GKI + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------- 69
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
++ SQ + G T++E + F G Y+ R + I A
Sbjct: 70 RISFCSQFSWIMPG--TIKENIIF-------GVSYD-----EYRYRSV-------IKA-- 106
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
L D + D + ++G+ GI SGGQ+ R++ + A
Sbjct: 107 ---------CQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDA 149
Query: 362 NVLYMDEISTGLDSST---TFQ--ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T F+ +CK + IL VT + L+ A D I++
Sbjct: 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 201
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + G +
Sbjct: 202 LHEGSSYFYGTFSELQN 218
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 46/217 (21%), Positives = 94/217 (43%), Gaps = 38/217 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L ++ G L A+ G +GAGKT+L+ ++ G + EG IK SG R
Sbjct: 24 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 70
Query: 941 VSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLND 996
+S +C Q ++ T+ E++++ D + + V + +L E + +
Sbjct: 71 IS-FCSQ----FSWIMPGTIKENIIFG------VSYDEYRYRS-VIKACQLEEDISKFAE 118
Query: 997 ---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
++G G++ LS QR R+++A + + + +D P LD + + +
Sbjct: 119 KDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 177
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
+T + + ++ + D++L+L G + G
Sbjct: 178 MANKTRILVTSK--MEHLKKADKILILH-EGSSYFYG 211
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 57/257 (22%), Positives = 103/257 (40%), Gaps = 71/257 (27%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
+LKD++ ++ ++ + G GAGKT+L++ + G+L + GKI + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------- 99
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
++ SQ+ + G T++E + +G Y+ R + I A
Sbjct: 100 RISFCSQNSWIMPG--TIKENI--------IGVSYD-----EYRYRSV-------IKA-- 135
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
L D + D + ++G+ GI SGGQ+ R++ + A
Sbjct: 136 ---------CQLEED--ISKFAEKD---NIVLGE---GGITLSGGQRARISLARAVYKDA 178
Query: 362 NVLYMDEISTGLDSST---TFQ--ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416
++ +D LD T F+ +CK + IL VT + L+ A D I++
Sbjct: 179 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRIL-VTSKMEHLKKA-------DKILI 230
Query: 417 LSEGQIVYQGPRDNVLE 433
L EG + G +
Sbjct: 231 LHEGSSYFYGTFSELQN 247
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 6e-07
Identities = 46/218 (21%), Positives = 96/218 (44%), Gaps = 39/218 (17%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L ++ G L A+ G +GAGKT+L+ ++ G + EG IK SG R
Sbjct: 54 LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS----EGKIKHSG---------R 100
Query: 941 VSGYCEQNDIHSPYV---TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVE-LKSLND 996
+S +C Q + ++ T+ E+++ ++ D + + V + +L E + +
Sbjct: 101 IS-FCSQ----NSWIMPGTIKENIIGVSY-------DEYRYRS-VIKACQLEEDISKFAE 147
Query: 997 ---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
++G G++ LS QR R+++A + + + +D P LD + + +
Sbjct: 148 KDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+T + + ++ + D++L+L G + G
Sbjct: 207 MANKTRILVTSK--MEHLKKADKILILH-EGSSYFYGT 241
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 60/289 (20%), Positives = 106/289 (36%), Gaps = 82/289 (28%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQR 245
L ++ + + ++G G GK++L+ AL ++ K G + G
Sbjct: 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------- 66
Query: 246 TCAYISQHD-LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFM 304
+ AY+ Q + + ++RE + F G + E + I A
Sbjct: 67 SVAYVPQQAWIQND--SLRENILF-------GCQLE-----EPYYRSV-------IQA-- 103
Query: 305 KAVAVAGQETSLVTDYVLKIL-GLDICADTMVGDEMRRGI--SGGQKKRVTTGEMLVGTA 361
+L+ D L+IL D T +G+ +G+ SGGQK+RV+ + A
Sbjct: 104 ---------CALLPD--LEILPSGD---RTEIGE---KGVNLSGGQKQRVSLARAVYSNA 146
Query: 362 NVLYMDEISTGLDSST---TFQIC----KFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414
++ D+ + +D+ F+ LK IL VT ++ L D I
Sbjct: 147 DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRIL-VTHSMSYLPQV-------DVI 198
Query: 415 ILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQ 463
I++S G+I G +L A+FL+ S
Sbjct: 199 IVMSGGKISEMGSYQELLA----------RDGAFAEFLRTYASHHHHHH 237
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-05
Identities = 47/224 (20%), Positives = 90/224 (40%), Gaps = 50/224 (22%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
L+ ++ G L A++G G GK++L+ L K EG + I G
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV----EGHVAIKG---------S 67
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD-----TKKRKMFVDEVME---LVE-L 991
V+ Y Q AW++ S + + + + V++ L+ L
Sbjct: 68 VA-YVPQ----------------QAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDL 110
Query: 992 KSLND---SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1048
+ L + +G GV+ LS Q++R+++A + +N I D+P S +DA +
Sbjct: 111 EILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169
Query: 1049 V--RNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAG 1090
V + +T + H + D ++++ GG++ G
Sbjct: 170 VIGPKGMLKNKTRILVTHS--MSYLPQVDVIIVMS-GGKISEMG 210
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 56.4 bits (137), Expect = 3e-08
Identities = 47/166 (28%), Positives = 70/166 (42%), Gaps = 21/166 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFA 939
L+ +S PG + ++G SG GKTTL+ LAG + G I I N
Sbjct: 20 LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRE 79
Query: 940 RVSGYCEQNDIHSPYV-----TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R GY Q V TVY ++ Y ++R ++ ++EL + L
Sbjct: 80 RRLGYLVQE-----GVLFPHLTVYRNIAYGLGNGKGRTAQERQR---IEAMLELTGISEL 131
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
P LS Q++R +A L +P +I +DEP S LD +
Sbjct: 132 AGRY---P--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQ 172
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.0 bits (131), Expect = 7e-08
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 38/134 (28%)
Query: 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP 243
+ +K + V ++ L+G GAGKTT + A+AG + GKI + G ++
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQDITNKPA 75
Query: 244 QRTCAYISQHDLHH--------GEMTVRETLDFSGRCLGVGTR-------------YEL- 281
I++ + E+TV E L +G R + L
Sbjct: 76 HV----INRMGIALVPEGRRIFPELTVYENLM-----MGAYNRKDKEGIKRDLEWIFSLF 126
Query: 282 --LAELSRREKQAG 293
L E R ++ G
Sbjct: 127 PRLKE--RLKQLGG 138
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 47/197 (23%), Positives = 77/197 (39%), Gaps = 30/197 (15%)
Query: 875 VGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGY 931
V + + + G + L+G +GAGKTT + +AG R G I I+
Sbjct: 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNK 73
Query: 932 PKNQETFARVS-GYCEQNDIHSP-------YVTVYESLLYSAWLRLSSDVDTKKRKMFVD 983
P G P +TVYE+L+ A+ R D + K ++
Sbjct: 74 P----AHVINRMGIA-----LVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLE 120
Query: 984 EVMELV-ELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042
+ L LK + G LS +++ L I L++ P ++ MDEP+ GL
Sbjct: 121 WIFSLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILV 175
Query: 1043 AIVMRTVRNTVDTGRTV 1059
+ V ++ G T+
Sbjct: 176 SEVFEVIQKINQEGTTI 192
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 8e-08
Identities = 53/174 (30%), Positives = 85/174 (48%), Gaps = 16/174 (9%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G +Q L++VS G + ++G SGAGK+TL+ + R T G + +
Sbjct: 32 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 91
Query: 928 ISGYPKNQETFARVS-GYCEQ--NDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDE 984
++ +++ T AR G Q N + S TV+ ++ L L + + K V E
Sbjct: 92 LTTLSESELTKARRQIGMIFQHFNLLSS--RTVFGNVALP--LELD-NTPKDEVKRRVTE 146
Query: 985 VMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1038
++ LV L +DS P S LS Q++R+ IA L +NP ++ D+ TS LD
Sbjct: 147 LLSLVGLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 1e-04
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 23/131 (17%)
Query: 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVT-------M 396
SGGQK+RV L VL D+ ++ LD +TT I + LK + L +T M
Sbjct: 165 SGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM 224
Query: 397 IVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
V + D + ++S G+++ Q V E F H P+ F+Q
Sbjct: 225 DVV--------KRICDCVAVISNGELIEQDT---VSEVFSH-----PKTPLAQKFIQSTL 268
Query: 457 SKKDQEQYWFR 467
E Y R
Sbjct: 269 HLDIPEDYQER 279
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 8e-08
Identities = 41/200 (20%), Positives = 80/200 (40%), Gaps = 40/200 (20%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L ++S PG L+G +G+GK+TL+ EG+I+I G
Sbjct: 37 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL---NTEGEIQIDGV----------- 82
Query: 943 GYCEQNDIHSPYVTVY-----------ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991
S +T+ + ++S R + D + + +V + V L
Sbjct: 83 ------SWDS--ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGL 134
Query: 992 KSLNDSMVG------LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+S+ + G + G LS ++ + +A +++ I+ +DEP++ LD I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 1046 MRTVRNTVDTGRTVVCTIHQ 1065
RT++ TV+ +
Sbjct: 195 RRTLKQAF-ADCTVILCEAR 213
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 9e-08
Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
D++VG G LS Q++R+ IA LV NP I+ +DE TS LD + A+V +
Sbjct: 517 DTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK-ARE 574
Query: 1056 GRTVVCTIHQPS 1067
GRT + H+ S
Sbjct: 575 GRTTIVIAHRLS 586
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 8e-07
Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 58/212 (27%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG-DIK---IS 929
+L +S + G AL+G SG GK+T++ D +AG ++G +IK +
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF---LDGKEIKQLNVQ 1103
Query: 930 GYPKN-----QET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFV 982
QE F ++ E++ Y R+ S
Sbjct: 1104 WLRAQLGIVSQEPILFDC---------------SIAENIAYGDNSRVVSY---------- 1138
Query: 983 DEVMELVEL-------KSLN---DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032
+E++ + SL ++ VG G LS Q++R+ IA LV P I+ +DE
Sbjct: 1139 EEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064
TS LD + +V + + GRT + H
Sbjct: 1198 ATSALDTESEKVVQEAL-DKAREGRTCIVIAH 1228
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 9e-08
Identities = 37/152 (24%), Positives = 66/152 (43%), Gaps = 28/152 (18%)
Query: 897 ALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCEQNDIHSP 953
++G +GAGKT ++++AG G I ++ + + QN
Sbjct: 30 VILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEK----HDIAFVYQN----- 80
Query: 954 YV-----TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
Y V ++L + +R+ + KR V + ++++ L D LS
Sbjct: 81 YSLFPHMNVKKNLEFG--MRMK-KIKDPKR---VLDTARDLKIEHLLDRNP-----LTLS 129
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+++R+ +A LV NP I+ +DEP S LD R
Sbjct: 130 GGEQQRVALARALVTNPKILLLDEPLSALDPR 161
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 45/219 (20%), Positives = 75/219 (34%), Gaps = 71/219 (32%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGDIKISGYPK 933
Q+L ++ PG +TAL+G +G+GK+T+ G+ + + G P
Sbjct: 33 QVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGK---------VLLDGEPL 83
Query: 934 ---------------NQET--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTK 976
QE F R + E++ Y
Sbjct: 84 VQYDHHYLHTQVAAVGQEPLLFGR---------------SFRENIAYG-----------L 117
Query: 977 KRKMFVDEVME----------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPS 1026
R ++E+ + D+ VG G LS QR+ + +A L+ P
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ-LSGGQRQAVALARALIRKPR 176
Query: 1027 IIFMDEPTSGLDARAAAIVMRTV-RNTVDTGRTVVCTIH 1064
++ +D TS LDA V R + + RTV+
Sbjct: 177 LLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 7e-07
Identities = 49/191 (25%), Positives = 77/191 (40%), Gaps = 57/191 (29%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEG----D 925
++ +L ++ G A +G+SG GK+TL+ DV +G+ I+G D
Sbjct: 351 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL---IDGHNIKD 407
Query: 926 IKISGYPKN-----QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRK 979
Q+ S TV E++L R + +D
Sbjct: 408 FLTGSLRNQIGLVQQDNIL-FSD------------TVKENILLG---RPTATD------- 444
Query: 980 MFVDEVME----------LVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1029
+EV+E ++ L D+ VG GV LS Q++RL+IA + NP I+
Sbjct: 445 ---EEVVEAAKMANAHDFIMNLPQGYDTEVGERGV-KLSGGQKQRLSIARIFLNNPPILI 500
Query: 1030 MDEPTSGLDAR 1040
+DE TS LD
Sbjct: 501 LDEATSALDLE 511
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 8e-07
Identities = 49/176 (27%), Positives = 79/176 (44%), Gaps = 38/176 (21%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQET--- 937
L +++ G AL+G SG+GK+T+ ++ T Y EG I + G+ + T
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLI----TRFYDIDEGHILMDGHDLREYTLAS 414
Query: 938 ----FARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLSSDVDTKK--RKMFVDE-V 985
A VS Q ND TV ++ Y A S ++ R + + +
Sbjct: 415 LRNQVALVS----QNVHLFND------TVANNIAY-ARTEEYSREQIEEAARMAYAMDFI 463
Query: 986 MELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
++ L D+++G GV LS QR+R+ IA L+ + I+ +DE TS LD
Sbjct: 464 NKMDNGL----DTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTE 514
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-06
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 36/175 (20%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISGYPKNQET--- 937
L VS G AL+G SG+GK+T+ ++ T Y G I + G+
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLF----TRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 938 ----FARVSGYCEQ-----NDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFVDE-VM 986
FA VS Q ND T+ ++ Y+A + ++ R+ E +
Sbjct: 415 LRRHFALVS----QNVHLFND------TIANNIAYAAEGEYTREQIEQAARQAHAMEFIE 464
Query: 987 ELVE-LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040
+ + L D+++G G S LS QR+R+ IA L+ + ++ +DE TS LD
Sbjct: 465 NMPQGL----DTVIGENGTS-LSGGQRQRVAIARALLRDAPVLILDEATSALDTE 514
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 50.8 bits (121), Expect = 2e-06
Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 14/153 (9%)
Query: 944 YCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPG 1003
++ +A ++ + + E+V N + +
Sbjct: 180 SGGTEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVW 239
Query: 1004 VSG------LSTEQRKRLTIAVEL------VANPSIIFMDEPTSGLDARAAAIVMRTVRN 1051
LS +R L +A L S++ +DEPT LD ++ +
Sbjct: 240 EGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER 299
Query: 1052 TVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
+ V+ H ++ +A D ++ +
Sbjct: 300 YLKKIPQVILVSHDE--ELKDAADHVIRISLEN 330
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 43/169 (25%), Positives = 71/169 (42%), Gaps = 46/169 (27%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG+GK+TL+ +AG G I V ++
Sbjct: 34 LLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDE--------KDV------TELPPKDRN 76
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TVY+++ + LR + + K+ V EV +++ + L +
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK---VREVAKMLHIDKLLNRY--- 130
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS Q++R+ IA LV P ++ +DEP S LDA R +R
Sbjct: 131 P--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE---VRA 174
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 4e-06
Identities = 46/169 (27%), Positives = 71/169 (42%), Gaps = 46/169 (27%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG GKTT + ++AG + EG I V +
Sbjct: 42 LLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGD--------RDV------TYLPPKDRN 84
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TVYE++ + ++ + KR V EL++++ L +
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKR---VRWAAELLQIEELLNRY--- 138
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS QR+R+ +A +V P ++ MDEP S LDA R A MR
Sbjct: 139 PA--QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA---MRA 182
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 48/169 (28%), Positives = 70/169 (41%), Gaps = 46/169 (27%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG GKTT + +LAG G+I V NDI
Sbjct: 34 LLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDD--------VLV------NDIPPKYRE 76
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TV+E++ + R S + +KR V E+ + + +L D
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR---VVEIARKLLIDNLLDR---K 130
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS Q++R+ +A LV P ++ DEP S LDA R MR
Sbjct: 131 PT--QLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMI---MRA 174
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 40/169 (23%)
Query: 898 LMGVSGAGKTTLMDVLAGRKTGGYI-EGDIKISGYPKNQETFARVSGYCEQNDIHS---- 952
L+G SG GKTT + ++AG + G I I V+ + +
Sbjct: 34 LLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGD--------KLVADPEKGIFVPPKDRD 82
Query: 953 -----------PYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
P++TVY+++ + LR + +R V EV EL+ L L +
Sbjct: 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNRK--- 136
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDA--RAAAIVMRT 1048
P LS QR+R+ + +V P + MDEP S LDA R MR
Sbjct: 137 PR--ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR---MRA 180
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 7/80 (8%)
Query: 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1072
RL +++ L S++ +DEPT LD ++ + + V+ H ++ +
Sbjct: 70 FRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE--ELKD 127
Query: 1073 AFDELLLL-----KRGGRVI 1087
A D ++ + V+
Sbjct: 128 AADHVIRISLENGSSKVEVV 147
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 1e-04
Identities = 55/198 (27%), Positives = 78/198 (39%), Gaps = 57/198 (28%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY--IEGDIKISG-------- 930
+L V+ V G + ALMG +GAGK+TL +LAG Y G+I + G
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDP--EYTVERGEILLDGENILELSP 74
Query: 931 -------------YPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKK 977
YP E V G VT+ L + +L +V +
Sbjct: 75 DERARKGLFLAFQYP--VE----VPG-----------VTIANFLRLALQAKLGREVGVAE 117
Query: 978 RKMFVDEVMELVELK------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMD 1031
V + +EL++ LN+ G SG ++KR I LV P+ +D
Sbjct: 118 FWTKVKKALELLDWDESYLSRYLNE------GFSG---GEKKRNEILQLLVLEPTYAVLD 168
Query: 1032 EPTSGLDARAAAIVMRTV 1049
E SGLD A +V R V
Sbjct: 169 ETDSGLDIDALKVVARGV 186
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A Length = 279 | Back alignment and structure |
|---|
Score = 43.6 bits (102), Expect = 2e-04
Identities = 23/114 (20%), Positives = 35/114 (30%), Gaps = 10/114 (8%)
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALA-----GK--LGKDLRASGKITYCGHELN-EF 241
+ +V + L+ P GAGK+ L L LA G L +G + Y E
Sbjct: 24 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 82
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRC-LGVGTRYELLAELSRREKQAGI 294
+ R A + + L L E L R + +
Sbjct: 83 IHHRLHALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRL 136
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 44/200 (22%), Positives = 74/200 (37%), Gaps = 49/200 (24%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-Q 244
IL+ +S V P + ++GP G+GK+TL LAG+ ++ G + + G +L P
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-TGGTVEFKGKDLLALSPED 93
Query: 245 RTCA-------Y---ISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGI 294
R Y I GV ++ L L+ G
Sbjct: 94 RAGEGIFMAFQYPVEIP----------------------GVSNQFFLQTALNAVRSYRGQ 131
Query: 295 KPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTG 354
+ D F + + +L + + ++ + G SGG+KKR
Sbjct: 132 ETLDRFD-FQDLMEEK-----------IALLKMP---EDLLTRSVNVGFSGGEKKRNDIL 176
Query: 355 EMLVGTANVLYMDEISTGLD 374
+M V + +DE +GLD
Sbjct: 177 QMAVLEPELCILDESDSGLD 196
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 8e-04
Identities = 50/208 (24%), Positives = 78/208 (37%), Gaps = 66/208 (31%)
Query: 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLM-------DVLAGRKTGGYIEGD-IKISGYPK 933
+L ++ +PG AL+G +G+GKTT++ DV G I D I I +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----DRGQILVDGIDIRKIKR 424
Query: 934 N----------QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLS-SDVDTKKRKMFV 982
+ Q+T S TV E+L Y +D
Sbjct: 425 SSLRSSIGIVLQDTILF-ST------------TVKENLKYG---NPGATD---------- 458
Query: 983 DEVMELVELKSLNDSMVGLPG---------VSGLSTEQRKRLTIAVELVANPSIIFMDEP 1033
+E+ E +L + + LP LS QR+ L I +ANP I+ +DE
Sbjct: 459 EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEA 518
Query: 1034 TSGLDARAAAIV---MRTVRNTVDTGRT 1058
TS +D + + M + G+T
Sbjct: 519 TSNVDTKTEKSIQAAMWKLM----EGKT 542
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1389 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 9e-30 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-22 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-28 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-19 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 7e-27 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-16 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-24 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-26 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 8e-22 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 3e-25 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-19 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-24 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-24 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-16 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-24 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 6e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 7e-23 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-16 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-22 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-19 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-22 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 9e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 4e-22 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-20 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 4e-17 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-21 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 3e-18 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-20 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-17 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 7e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-17 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-14 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.002 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-05 | |
| d2cdna1 | 181 | c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium | 8e-04 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 0.001 | |
| d1nlfa_ | 274 | c.37.1.11 (A:) Hexameric replicative helicase repA | 0.002 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 0.002 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 0.003 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 0.003 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.004 | |
| d1akya1 | 180 | c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Bak | 0.004 | |
| d1n0wa_ | 242 | c.37.1.11 (A:) DNA repair protein Rad51, catalytic | 0.004 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 117 bits (294), Expect = 9e-30
Identities = 58/246 (23%), Positives = 100/246 (40%), Gaps = 20/246 (8%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+ L VS G +T ++G +G+GK+TL++V+ G + G + + K + E
Sbjct: 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAEL 76
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDT-------KKRKMFVDEVMELVE 990
+ Q +TV E+LL S +++ K + V++ +++E
Sbjct: 77 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILE 136
Query: 991 LKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVR 1050
L+ G LS Q K + I L+ NP +I MDEP +G+ A + V
Sbjct: 137 FLKLSHLYDRKAG--ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 194
Query: 1051 NTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVP 1110
G T + H+ + D L ++ G++I G E + V P
Sbjct: 195 ELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE-------EEIKNVLSDP 245
Query: 1111 KIKEAY 1116
K+ E Y
Sbjct: 246 KVVEIY 251
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 95.4 bits (237), Expect = 3e-22
Identities = 52/255 (20%), Positives = 94/255 (36%), Gaps = 35/255 (13%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ L VS V +TL++GP G+GK+TL+ + G L D G++ + ++
Sbjct: 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKE 72
Query: 243 P----QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
P Q EMTV E L C G L + +++ ++
Sbjct: 73 PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVE--- 129
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
+L+ L L D G+ +SGGQ K V G L+
Sbjct: 130 ------------------KAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALM 166
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
++ MDE G+ I + ++ +T ++ + D + ++
Sbjct: 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLEL-KAKGITFLII-EHRLDIVLNYIDHLYVMF 224
Query: 419 EGQIVYQGPRDNVLE 433
GQI+ +G + ++
Sbjct: 225 NGQIIAEGRGEEEIK 239
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (283), Expect = 1e-28
Identities = 56/229 (24%), Positives = 110/229 (48%), Gaps = 15/229 (6%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
KT +GE+ + L +V+ + G ++MG SG+GK+T+++++ + T G + +IK
Sbjct: 9 KTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIK 68
Query: 928 ISGYPKNQETFARVS--GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
+ ++ T R G+ Q P +T E++ + + ++R+ E
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALEC 128
Query: 986 MELVEL-KSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAI 1044
+++ EL + + + LS Q++R+ IA L NP II D+PT LD++
Sbjct: 129 LKMAELEERFANHKP-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEK 183
Query: 1045 VMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092
+M+ ++ + G+TVV H I++ + ++ L + G V L
Sbjct: 184 IMQLLKKLNEEDGKTVVVVTH--DINVARFGERIIYL-KDGEVEREEKL 229
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 84.9 bits (210), Expect = 7e-19
Identities = 44/262 (16%), Positives = 93/262 (35%), Gaps = 57/262 (21%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
+ + LK+V+ +K ++GP G+GK+T++ + G++ +
Sbjct: 12 KMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIK 68
Query: 238 LN-----EFVPQRTC--AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREK 290
N E R ++ Q +T E ++ ++ +S E+
Sbjct: 69 TNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVEL-------PLIFKYRGAMSGEER 121
Query: 291 QAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKR 350
+ L+ L + + + +SGGQ++R
Sbjct: 122 RK---------------------------RALECLKMAELEERF-ANHKPNQLSGGQQQR 153
Query: 351 VTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDL 410
V L ++ D+ + LDS T +I + LK++ T++V T+D+
Sbjct: 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVV-------THDI 206
Query: 411 -----FDDIILLSEGQIVYQGP 427
+ II L +G++ +
Sbjct: 207 NVARFGERIIYLKDGEVEREEK 228
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 108 bits (271), Expect = 7e-27
Identities = 49/243 (20%), Positives = 92/243 (37%), Gaps = 31/243 (12%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQET 937
+ + + G + L+G +GAGKTT + +AG R G I + +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 938 FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMEL-VELKSLND 996
+ P +TVYE+L+ A+ R D + K ++ + L LK
Sbjct: 79 NRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLK 134
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1056
+ G LS +++ L I L++ P ++ MDEP+ GL + V ++ G
Sbjct: 135 QLGG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEG 189
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGPLGHESHKLIEYFEAVPGVPKIK 1113
T++ + A +L+ G+++ G + ++
Sbjct: 190 TTILLVEQ----NALGALKVAHYGYVLET-GQIVLEGKA-----------SELLDNEMVR 233
Query: 1114 EAY 1116
+AY
Sbjct: 234 KAY 236
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 77.3 bits (190), Expect = 4e-16
Identities = 45/252 (17%), Positives = 90/252 (35%), Gaps = 42/252 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-LRASGKITYCGHELNEF 241
++ +K + V ++ L+G GAGKTT + A+AG + + ++
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHV 77
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
+ + A + + E+TV E L K I
Sbjct: 78 INRMGIALVPEGRRIFPELTVYENLMMGAY---------------------NRKDKEGIK 116
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
++ + L + G +SGG+++ + G L+
Sbjct: 117 RDLEWIF-------------SLFPRLKERLKQLGGT-----LSGGEQQMLAIGRALMSRP 158
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+L MDE S GL ++ + ++++ + T+++ Q A + +L GQ
Sbjct: 159 KLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLV-EQNALGALKVAHYGYVLETGQ 216
Query: 422 IVYQGPRDNVLE 433
IV +G +L+
Sbjct: 217 IVLEGKASELLD 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 107 bits (268), Expect = 2e-26
Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 24/219 (10%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ-E 936
++ ++ + G L+G SG GKTT + ++AG T EG I
Sbjct: 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT----EGRIYFGDRDVTYLP 74
Query: 937 TFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLND 996
R Q+ P++TVYE++ + ++ + V EL++++ L +
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLN 131
Query: 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN-TVDT 1055
+ LS QR+R+ +A +V P ++ MDEP S LDA+ + ++
Sbjct: 132 RYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKL 186
Query: 1056 GRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
T + H D EA D + ++ R G+++ G
Sbjct: 187 KVTTIYVTH----DQVEAMTMGDRIAVMNR-GQLLQIGS 220
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 101 bits (253), Expect = 2e-24
Identities = 54/271 (19%), Positives = 98/271 (36%), Gaps = 52/271 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+ + ++ +K +LLGP G GKTT + +AG G+I + ++
Sbjct: 18 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLP 74
Query: 243 PQ-RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P+ R + + Q MTV E + F + + E +
Sbjct: 75 PKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK----------FPKDEIDKRV------- 117
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ ++L ++ + +SGGQ++RV +V
Sbjct: 118 -----------------RWAAELLQIEELLNRYPAQ-----LSGGQRQRVAVARAIVVEP 155
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+VL MDE + LD+ + +K++ L VT I E + D I +++ GQ
Sbjct: 156 DVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQ 214
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
++ G V + P VA F+
Sbjct: 215 LLQIGSPTEV--------YLRPNSVFVATFI 237
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 105 bits (264), Expect = 6e-26
Identities = 57/226 (25%), Positives = 103/226 (45%), Gaps = 15/226 (6%)
Query: 871 KTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIK 927
K G +Q L++VS G + ++G SGAGK+TL+ + R T G + +
Sbjct: 9 KVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQE 68
Query: 928 ISGYPKNQETFARVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVM 986
++ +++ T AR G Q+ TV+ ++ L + + K+R V E++
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR---VTELL 125
Query: 987 ELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVM 1046
LV L +DS S LS Q++R+ IA L +NP ++ DE TS LD ++
Sbjct: 126 SLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 1047 RTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+++ G T++ H+ + + D + ++ G +I
Sbjct: 181 ELLKDINRRLGLTILLITHEMDV-VKRICDCVAVI-SNGELIEQDT 224
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 8e-22
Identities = 53/262 (20%), Positives = 93/262 (35%), Gaps = 49/262 (18%)
Query: 178 PSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHE 237
R+++ L +VS V ++ ++G GAGK+TL+ + G + G E
Sbjct: 12 HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQE 68
Query: 238 LNEFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQ 291
L R I QH TV + + E +
Sbjct: 69 LTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNT----------PKDEVK 118
Query: 292 AGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRV 351
+ +L ++GL D+ + +SGGQK+RV
Sbjct: 119 RRV------------------------TELLSLVGLGDKHDSYPSN-----LSGGQKQRV 149
Query: 352 TTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLF 411
L VL DE ++ LD +TT I + LK + L +T+++ + +
Sbjct: 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRIC 208
Query: 412 DDIILLSEGQIVYQGPRDNVLE 433
D + ++S G+++ Q V
Sbjct: 209 DCVAVISNGELIEQDTVSEVFS 230
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 104 bits (262), Expect = 3e-25
Identities = 43/209 (20%), Positives = 86/209 (41%), Gaps = 20/209 (9%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVS 942
L +++ G + A+ G +G+GKT+L+ ++ G EG IK SG RV
Sbjct: 52 LKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE--ASEGIIKHSG---------RV- 99
Query: 943 GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLP 1002
+C Q P T+ E++++ + K ++ + +++++G
Sbjct: 100 SFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLG-E 154
Query: 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCT 1062
G LS QR R+++A + + + +D P LD V + + +T +
Sbjct: 155 GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILV 214
Query: 1063 IHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ D++L+L + G + G
Sbjct: 215 TSKME--HLRKADKILILHQ-GSSYFYGT 240
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 86.5 bits (214), Expect = 6e-19
Identities = 51/331 (15%), Positives = 109/331 (32%), Gaps = 88/331 (26%)
Query: 103 LLESILKIVEEDNEKFLKRIRHRTDRVGIEIPKIEVRYDHLSVEGDVHVGTRALPTLLNV 162
++E++ EE + L++++ + V + HL + G+
Sbjct: 4 IMENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGN-------------- 49
Query: 163 ALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222
+LK+++ ++ M + G G+GKT+L++ + G+L
Sbjct: 50 ----------------------PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 223 KDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELL 282
G I + G F Q + T++E + F
Sbjct: 88 AS---EGIIKHSGR--VSFCSQFSWIM---------PGTIKENIIFGVS----------- 122
Query: 283 AELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342
+ + +KA + I +T++G+
Sbjct: 123 ------------YDEYRYKSVVKACQLQ-----------QDITKFAEQDNTVLGEGGVT- 158
Query: 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQ 402
+SGGQ+ R++ + A++ +D LD T Q+ + + + T I+ +
Sbjct: 159 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSK 217
Query: 403 PAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433
E D I++L +G + G +
Sbjct: 218 --MEHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 101 bits (253), Expect = 1e-24
Identities = 51/236 (21%), Positives = 99/236 (41%), Gaps = 19/236 (8%)
Query: 878 DRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQ 935
+ ++L +S G + L+G +GAGKTT + +++ + + G + + +
Sbjct: 13 GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT--VFGKNVVEEP 70
Query: 936 ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLN 995
++ Y + + E L + A SS + ++ V+ E+ L
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM---VERATEIAGLGEKI 127
Query: 996 DSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1055
V S S ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 128 KDRV-----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 182
Query: 1056 GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG-----HESHKLIEYFEAV 1106
G T++ + H ++ D + L+ G ++ G + +++ + E FE V
Sbjct: 183 GLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVEELKERYKAQNIEEVFEEV 236
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 86.2 bits (213), Expect = 3e-19
Identities = 54/276 (19%), Positives = 98/276 (35%), Gaps = 54/276 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
ILK +S ++ + L+GP GAGKTT + ++ + SG +T G + E
Sbjct: 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEP 70
Query: 243 PQ--RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ + +Y+ + + M E L F EI
Sbjct: 71 HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYAS--------------------SSSEI 110
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+ + + +I GL V S G +++ L+
Sbjct: 111 EEMV--------------ERATEIAGLGEKIKDRVS-----TYSKGMVRKLLIARALMVN 151
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+ +DE ++GLD ++ K LKQ +T++V+ E L D I L+ G
Sbjct: 152 PRLAILDEPTSGLDVLNAREVRKILKQA-SQEGLTILVSSHNM-LEVEFLCDRIALIHNG 209
Query: 421 QIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVT 456
IV G + + + + + + + +EV
Sbjct: 210 TIVETGTVEEL--------KERYKAQNIEEVFEEVV 237
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (254), Expect = 2e-24
Identities = 44/229 (19%), Positives = 86/229 (37%), Gaps = 28/229 (12%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQE 936
++L VS R G + +++G SG+GK+T + + + + G I I+
Sbjct: 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 74
Query: 937 TFARVS-----------GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEV 985
Q+ ++TV E+++ + + +
Sbjct: 75 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME--APIQVLGLSKHDARERALKY 132
Query: 986 MELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV 1045
+ V + LS Q++R++IA L P ++ DEPTS LD V
Sbjct: 133 LAKVGIDERAQGKY----PVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEV 188
Query: 1046 MRTVRNTVDTGRTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
+R ++ + G+T+V H ++ A ++ L G++ G
Sbjct: 189 LRIMQQLAEEGKTMVVVTH----EMGFARHVSSHVIFL-HQGKIEEEGD 232
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 79.1 bits (195), Expect = 1e-16
Identities = 49/272 (18%), Positives = 103/272 (37%), Gaps = 36/272 (13%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
+LK VS + + ++G G+GK+T + + G I G +N
Sbjct: 14 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVR 70
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLG-VGTRYELLAELSRREKQAGIKPDPEID 301
+ ++ + L L V + L + ++ E +
Sbjct: 71 DKDGQLKVAD----------KNQLRLLRTRLTMVFQHFNLWSHMTVLENVM--------E 112
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
A ++ + ++ + L +G+D A + +SGGQ++RV+ L
Sbjct: 113 APIQVLGLSKHDARERALKYLAKVGIDERAQ----GKYPVHLSGGQQQRVSIARALAMEP 168
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+VL DE ++ LD ++ + ++Q+ TM+V + + +I L +G+
Sbjct: 169 DVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEMG-FARHVSSHVIFLHQGK 226
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFLQ 453
I +G + + F + P+ + FL+
Sbjct: 227 IEEEGDPE---QVFGN-----PQSPRLQQFLK 250
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 99.6 bits (248), Expect = 3e-24
Identities = 37/189 (19%), Positives = 78/189 (41%), Gaps = 16/189 (8%)
Query: 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFAR 940
+L ++ G + G +G GKTTL+ ++ ++G+I +G P +
Sbjct: 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPITK--VKG 70
Query: 941 VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVG 1000
+ + I ++V + L A L K K + + +E VE+ L
Sbjct: 71 KIFFLPEEIIVPRKISVEDYLKAVASLY-----GVKVNKNEIMDALESVEVLDLKKK--- 122
Query: 1001 LPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTV 1059
+ LS +R+ +A L+ N I +D+P +D + V++++ + + G +
Sbjct: 123 ---LGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 1060 VCTIHQPSI 1068
+ + + S
Sbjct: 180 ISSREELSY 188
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 75.7 bits (186), Expect = 6e-16
Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 47/220 (21%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
S +L+ ++ ++ + GP G GKTTL+ ++ L G+I Y G +
Sbjct: 9 SVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPI 65
Query: 239 NEFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
+ + ++ + + +++V + L GV + +
Sbjct: 66 TKV--KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA------------- 110
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
L+ + + + +S G +RV L+
Sbjct: 111 -----------------------LESVEVLDLKKKL------GELSQGTIRRVQLASTLL 141
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIV 398
A + +D+ +D + ++ K + +++ + +I
Sbjct: 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIIS 181
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 96.5 bits (240), Expect = 7e-23
Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 28/219 (12%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP---KNQETFA 939
L +SG R G + L+G +GAGK+TL+ +AG +G +G I+ +G P + A
Sbjct: 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA 71
Query: 940 RVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMV 999
Y Q V+ L K R +++V + L
Sbjct: 72 LHRAYLSQQQTPPFATPVWHYLTLHQHD--------KTRTELLNDVAGALALDDKLGRST 123
Query: 1000 GLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
LS + +R+ +A ++ ++ +DEP + LD + + + +
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G +V + H + LLK GG+++ +G
Sbjct: 179 CQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGR 215
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 76.1 bits (187), Expect = 8e-16
Identities = 51/258 (19%), Positives = 84/258 (32%), Gaps = 60/258 (23%)
Query: 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ- 244
L +SG V+ + L+GP GAGK+TL+ +AG G I + G L +
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM----TSGKGSIQFAGQPLEAWSATK 69
Query: 245 --RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
AY+SQ V L + +R E
Sbjct: 70 LALHRAYLSQQQTPPFATPVWHYLTLHQH------------DKTRTELL----------- 106
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
+ V L LD +SGG+ +RV +++
Sbjct: 107 ----------------NDVAGALALDDKLGRSTNQ-----LSGGEWQRVRLAAVVLQITP 145
Query: 363 -------VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415
+L +DE LD + + K L + + ++++ T
Sbjct: 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSAL-CQQGLAIVMSSHDLN-HTLRHAHRAW 203
Query: 416 LLSEGQIVYQGPRDNVLE 433
LL G+++ G R+ VL
Sbjct: 204 LLKGGKMLASGRREEVLT 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 96.1 bits (239), Expect = 2e-22
Identities = 44/219 (20%), Positives = 86/219 (39%), Gaps = 12/219 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
+ L +++ G AL+G SG+GK+T+ ++ EG I + G+
Sbjct: 24 PGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLRE 81
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ QN ++ R + + + ++
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNG 141
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D+++G G LS QR+R+ IA L+ + I+ +DE TS LD + + +
Sbjct: 142 L--DTIIGENG-VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE- 197
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ RT + H+ S E DE+++++ G ++ G
Sbjct: 198 LQKNRTSLVIAHRLS--TIEQADEIVVVED-GIIVERGT 233
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 88.0 bits (218), Expect = 1e-19
Identities = 55/256 (21%), Positives = 106/256 (41%), Gaps = 44/256 (17%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
R V L++++ + + L+G G+GK+T+ + D G I GH+L E
Sbjct: 25 GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLRE 81
Query: 241 FVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + A +SQ+ + Y E SR + +
Sbjct: 82 YTLASLRNQVALVSQNVHLFNDTVANNI------------AYARTEEYSREQIE------ 123
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+A +A D++ K +D DT++G E +SGGQ++R+ L
Sbjct: 124 -------EAARMAY-----AMDFINK---MDNGLDTIIG-ENGVLLSGGQRQRIAIARAL 167
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ + +L +DE ++ LD+ + I L ++ + T +V + T + D+I+++
Sbjct: 168 LRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHR--LSTIEQADEIVVV 223
Query: 418 SEGQIVYQGPRDNVLE 433
+G IV +G +L
Sbjct: 224 EDGIIVERGTHSELLA 239
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 95.6 bits (238), Expect = 3e-22
Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 24/247 (9%)
Query: 848 LPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKT 907
+ + + D++S+ ++ +L ++ G A +G+SG GK+
Sbjct: 10 IEIKQGRIDIDHVSF-----------QYNDNEAPILKDINLSIEKGETVAFVGMSGGGKS 58
Query: 908 TLMDVLAGRKTGGYIEGDIKISGYP---KNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964
TL++++ G I I G+ + G Q D TV E++L
Sbjct: 59 TLINLIPRFYD--VTSGQILIDGHNIKDFLTGSLRNQIGLV-QQDNILFSDTVKENILLG 115
Query: 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVAN 1024
+V + + + L D+ VG GV LS Q++RL+IA + N
Sbjct: 116 RPTATDEEVVEAAKMANAHDFIM--NLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNN 172
Query: 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084
P I+ +DE TS LD + +I+ + + RT + H+ S D++++++ G
Sbjct: 173 PPILILDEATSALDLESESIIQEALDV-LSKDRTTLIVAHRLS--TITHADKIVVIE-NG 228
Query: 1085 RVIYAGP 1091
++ G
Sbjct: 229 HIVETGT 235
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 94.1 bits (234), Expect = 9e-22
Identities = 55/255 (21%), Positives = 92/255 (36%), Gaps = 43/255 (16%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
ILKD++ ++ +G G GK+TL+ + SG+I GH + +
Sbjct: 28 DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKD 84
Query: 241 FVPQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298
F+ I Q D TV+E + G E+ K A
Sbjct: 85 FLTGSLRNQIGLVQQDNILFSDTVKENILL-------GRPTATDEEVVEAAKMANAHDF- 136
Query: 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLV 358
I+ L DT VG E +SGGQK+R++ + +
Sbjct: 137 -------------------------IMNLPQGYDTEVG-ERGVKLSGGQKQRLSIARIFL 170
Query: 359 GTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418
+L +DE ++ LD + I + L + D T ++ + T D I+++
Sbjct: 171 NNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHR--LSTITHADKIVVIE 226
Query: 419 EGQIVYQGPRDNVLE 433
G IV G ++
Sbjct: 227 NGHIVETGTHRELIA 241
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.4 bits (237), Expect = 4e-22
Identities = 49/256 (19%), Positives = 101/256 (39%), Gaps = 42/256 (16%)
Query: 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNE 240
+ V +L+ ++ ++P +T L+GP G+GK+T+ L G++ G L +
Sbjct: 24 RPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQ 80
Query: 241 FVPQ---RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ + R A + Q + +++E + + G+
Sbjct: 81 YEHRYLHRQVAAVGQ-EPQVFGRSLQENIAY------------------------GLTQK 115
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
P ++ A +G I GL DT V + + +SGGQ++ V L
Sbjct: 116 PTMEEITAAAVKSGAH--------SFISGLPQGYDTEVDEAGSQ-LSGGQRQAVALARAL 166
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
+ VL +D+ ++ LD+++ Q+ + L + ++++ + D I+ L
Sbjct: 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH--LSLVEQADHILFL 224
Query: 418 SEGQIVYQGPRDNVLE 433
G I G ++E
Sbjct: 225 EGGAIREGGTHQQLME 240
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 90.7 bits (225), Expect = 1e-20
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 12/220 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
+ +L ++ RPG +TAL+G +G+GK+T+ +L G + + G P
Sbjct: 23 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ--PTGGQLLLDGKPLPQ 80
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
R Q ++ E++ Y + + + T + L
Sbjct: 81 YEHRYLHRQVAAVGQEPQVFGR-SLQENIAYGLTQKPTMEEITAAAVK-SGAHSFISGLP 138
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
D+ V G LS QR+ + +A L+ P ++ +D+ TS LDA + V + + +
Sbjct: 139 QGYDTEVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES 197
Query: 1053 VD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ R+V+ S + E D +L L+ GG + G
Sbjct: 198 PERYSRSVLLITQHLS--LVEQADHILFLE-GGAIREGGT 234
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.8 bits (233), Expect = 8e-22
Identities = 47/219 (21%), Positives = 95/219 (43%), Gaps = 13/219 (5%)
Query: 876 GEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP--- 932
D +L +++ + G + ++G SG+GK+TL ++ + + I G+
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ--VLIDGHDLAL 69
Query: 933 KNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK 992
+ R G Q D ++ +++ + V+ + + +
Sbjct: 70 ADPNWLRRQVGVVLQ-DNVLLNRSIIDNI---SLANPGMSVEKVIYAAKLAGAHDFISEL 125
Query: 993 SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1052
+ + +GLS QR+R+ IA LV NP I+ DE TS LD + ++MR +
Sbjct: 126 REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK- 184
Query: 1053 VDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
+ GRTV+ H+ S + D +++++ G+++ G
Sbjct: 185 ICKGRTVIIIAHRLS--TVKNADRIIVME-KGKIVEQGK 220
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.3 bits (198), Expect = 4e-17
Identities = 49/254 (19%), Positives = 94/254 (37%), Gaps = 39/254 (15%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
K S IL +++ +K + ++G G+GK+TL + + +G++ GH+L
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLA 68
Query: 240 EFVPQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPE 299
P + + L S + + P
Sbjct: 69 LADPNWLRRQVGVVLQDNV-----------------------LLNRSIIDNISLANPGMS 105
Query: 300 IDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVG 359
++ + A +AG + + E G+SGGQ++R+ LV
Sbjct: 106 VEKVIYAAKLAG---------AHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVN 156
Query: 360 TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419
+L DE ++ LD + I + + ++ T+I+ + T D II++ +
Sbjct: 157 NPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHR--LSTVKNADRIIVMEK 212
Query: 420 GQIVYQGPRDNVLE 433
G+IV QG +L
Sbjct: 213 GKIVEQGKHKELLS 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 91.9 bits (228), Expect = 3e-21
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 14/214 (6%)
Query: 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFA 939
+ + ++ G +G SG GK+TL+ ++AG +T + + I N A
Sbjct: 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD--LFIGEKRMNDTPPA 70
Query: 940 RVS-GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSM 998
G Q+ P+++V E++ + L + +R V++V E+++L L D
Sbjct: 71 ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR---VNQVAEVLQLAHLLDRK 127
Query: 999 VGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGR 1057
LS QR+R+ I LVA PS+ +DEP S LDA + + GR
Sbjct: 128 -----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 182
Query: 1058 TVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
T++ H D++++L GRV G
Sbjct: 183 TMIYVTHDQVE-AMTLADKIVVL-DAGRVAQVGK 214
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 83.5 bits (206), Expect = 3e-18
Identities = 56/271 (20%), Positives = 99/271 (36%), Gaps = 52/271 (19%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V + KD++ + + +GP G GK+TL+ +AG SG + +N+
Sbjct: 12 EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTP 68
Query: 243 PQRTC-AYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEID 301
P + Q + ++V E + F + G ++
Sbjct: 69 PAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKE--------VINQRV--------- 111
Query: 302 AFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTA 361
+ V ++L L D +SGGQ++RV G LV
Sbjct: 112 -----------------NQVAEVLQLAHLLDRKPKA-----LSGGQRQRVAIGRTLVAEP 149
Query: 362 NVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421
+V +DE + LD++ Q+ + ++ L TMI E L D I++L G+
Sbjct: 150 SVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR 208
Query: 422 IVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ G E + + P + VA F+
Sbjct: 209 VAQVGKPL---ELYHY-----PADRFVAGFI 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 88.1 bits (218), Expect = 8e-20
Identities = 56/218 (25%), Positives = 91/218 (41%), Gaps = 22/218 (10%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFAR 940
+ +S + G L+G SG GKTT + ++AG + G I K+ P+
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 941 VS---GYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDS 997
Q+ P++TVY+++ + LR + +R V EV EL+ L L +
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTELLNR 135
Query: 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTG 1056
LS QR+R+ + +V P + MDEP S LDA+ + ++ G
Sbjct: 136 KP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG 190
Query: 1057 RTVVCTIHQPSIDIFEAF---DELLLLKRGGRVIYAGP 1091
T + H D EA D + ++ R G + G
Sbjct: 191 VTTIYVTH----DQVEAMTMGDRIAVMNR-GVLQQVGS 223
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 81.1 bits (200), Expect = 2e-17
Identities = 56/270 (20%), Positives = 93/270 (34%), Gaps = 44/270 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
V ++++S VK +LLGP G GKTT + +AG G+I + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPE 71
Query: 243 PQRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDA 302
+ + L L ++ R+E +
Sbjct: 72 KGIFVPPKDRDIAMVFQSY---ALYPHMTVYDNIAFPLKLRKVPRQEIDQRV-------- 120
Query: 303 FMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN 362
V ++LGL + + +SGGQ++RV G +V
Sbjct: 121 ----------------REVAELLGLTELLNRKPRE-----LSGGQRQRVALGRAIVRKPQ 159
Query: 363 VLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422
V MDE + LD+ ++ LK++ L VT I E + D I +++ G +
Sbjct: 160 VFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVL 218
Query: 423 VYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
G D V + P VA F+
Sbjct: 219 QQVGSPDEV--------YDKPANTFVAGFI 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 87.2 bits (216), Expect = 2e-19
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 12/218 (5%)
Query: 877 EDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPK 933
+D Q+L +S +P + A G SG GK+T+ +L + T G I I
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI-- 69
Query: 934 NQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS 993
+ E + G+ Q+ D+ F +E + +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ- 128
Query: 994 LNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV 1053
++ VG GV +S QR+RL IA + NP I+ +DE T+ LD+ + ++V + + + +
Sbjct: 129 -LNTEVGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS-L 185
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
GRT + H+ S D++ +++ G++ +G
Sbjct: 186 MKGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGK 220
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 81.8 bits (202), Expect = 1e-17
Identities = 53/253 (20%), Positives = 91/253 (35%), Gaps = 42/253 (16%)
Query: 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV 242
S +IL+D+S +P+ + GP G GK+T+ L +G+IT G ++
Sbjct: 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNIS 70
Query: 243 PQRTCAYIS--QHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEI 300
+ + I D T+RE L + + +L+ PD
Sbjct: 71 LENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQL- 129
Query: 301 DAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGT 360
+T VG E ISGGQ++R+ +
Sbjct: 130 -------------------------------NTEVG-ERGVKISGGQRQRLAIARAFLRN 157
Query: 361 ANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420
+L +DE + LDS + + K L ++ T +V + T D I + +G
Sbjct: 158 PKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHR--LSTIVDADKIYFIEKG 213
Query: 421 QIVYQGPRDNVLE 433
QI G + ++
Sbjct: 214 QITGSGKHNELVA 226
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 85.5 bits (211), Expect = 7e-19
Identities = 57/218 (26%), Positives = 101/218 (46%), Gaps = 15/218 (6%)
Query: 879 RLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQE 936
++ L +V+ G ++G SGAGKTT M ++AG + G + D ++
Sbjct: 17 KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI 76
Query: 937 T--FARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL 994
R G Q P +T +E++ + S + +KR V+EV +++++ +
Sbjct: 77 VPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR---VEEVAKILDIHHV 133
Query: 995 NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1053
+ LS Q++R+ +A LV +PS++ +DEP S LDAR V+
Sbjct: 134 LNHFPR-----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
G T++ H P+ DIF D + +L G+++ G
Sbjct: 189 RLGVTLLVVSHDPA-DIFAIADRVGVL-VKGKLVQVGK 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 79.7 bits (196), Expect = 6e-17
Identities = 56/279 (20%), Positives = 105/279 (37%), Gaps = 57/279 (20%)
Query: 180 KKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELN 239
KK V L +V+ ++ +LGP GAGKTT M +AG +G++ + +
Sbjct: 14 KKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVA 70
Query: 240 EFVPQ------RTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAG 293
R + Q + +T E + F + + R++
Sbjct: 71 SNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEE-------IRKR--- 120
Query: 294 IKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTT 353
+ V KIL + + R +SG Q++RV
Sbjct: 121 ------------------------VEEVAKILDIHHVLNHFP-----RELSGAQQQRVAL 151
Query: 354 GEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413
LV ++L +DE + LD+ +K++ L VT++V PA + + + D
Sbjct: 152 ARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADR 210
Query: 414 IILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+ +L +G++V G + + +++ P VA +
Sbjct: 211 VGVLVKGKLVQVGKPE---DLYDN-----PVSIQVASLI 241
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 77.4 bits (190), Expect = 3e-16
Identities = 58/275 (21%), Positives = 104/275 (37%), Gaps = 55/275 (20%)
Query: 179 SKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHEL 238
S+K L ++S V+ ++LGP GAGKT + +AG D SG+I G ++
Sbjct: 8 SRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDV 64
Query: 239 NEFVPQR-TCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPD 297
+ P++ A++ Q+ M V++ L+F R + +R
Sbjct: 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDP--------KRVLDT----- 111
Query: 298 PEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEML 357
+ L ++ D +SGG+++RV L
Sbjct: 112 ------------------------ARDLKIEHLLDRNP-----LTLSGGEQQRVALARAL 142
Query: 358 VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417
V +L +DE + LD T + L + +T++ E + D I ++
Sbjct: 143 VTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVV 201
Query: 418 SEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFL 452
+G+++ G + E FE P VA F+
Sbjct: 202 MDGKLIQVGKPE---EIFEK-----PVEGRVASFV 228
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 73.2 bits (179), Expect = 7e-15
Identities = 45/211 (21%), Positives = 85/211 (40%), Gaps = 17/211 (8%)
Query: 883 LHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISG-YPKNQETFARV 941
L ++S G ++G +GAGKT ++++AG I + G +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGR--ILLDGKDVTDLSPEKHD 73
Query: 942 SGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGL 1001
+ QN P++ V ++L + ++ K V + ++++ L D
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMK------KIKDPKRVLDTARDLKIEHLLDRN--- 124
Query: 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVV 1060
LS +++R+ +A LV NP I+ +DEP S LD R + TV+
Sbjct: 125 --PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 1061 CTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091
H + + D + ++ G++I G
Sbjct: 183 HITHDQT-EARIMADRIAVV-MDGKLIQVGK 211
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 73.1 bits (179), Expect = 1e-14
Identities = 49/231 (21%), Positives = 103/231 (44%), Gaps = 24/231 (10%)
Query: 892 PGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIE-GDIKISGYPKNQETFARVSGYCEQN 948
L+G +GAGK+ ++++AG + G + I+ P + R G+ Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPER----RGIGFVPQD 78
Query: 949 DIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008
P+++VY ++ Y +V+ +R V E+ E + + L D + LS
Sbjct: 79 YALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRK-----PARLS 128
Query: 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPS 1067
+R+R+ +A LV P ++ +DEP S +D + ++M +R + ++ H
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1068 IDIFEAFDELLLLKRGGRVIYAGP----LGHESHKLIEYFEAVPGVPKIKE 1114
+ DE+ ++ GR++ G ++ ++ E+ A + K+ +
Sbjct: 189 -EAAMLADEVAVM-LNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSK 237
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 68.9 bits (168), Expect = 3e-13
Identities = 47/252 (18%), Positives = 90/252 (35%), Gaps = 55/252 (21%)
Query: 202 LLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEM 260
LLGP GAGK+ + +AG + D G++ G ++ P +R ++ Q +
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHL 85
Query: 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDY 320
+V + + R + R + E+
Sbjct: 86 SVYRNIAYGLRNVERVERDRRVREM----------------------------------- 110
Query: 321 VLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQ 380
+ + D +SGG+++RV LV +L +DE + +D T
Sbjct: 111 ------AEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV 164
Query: 381 ICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGF 440
+ + L+ + DV ++ E L D++ ++ G+IV +G +
Sbjct: 165 LMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKELFS------- 216
Query: 441 KCPERKGVADFL 452
+ VA+FL
Sbjct: 217 --AKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.8 bits (107), Expect = 7e-06
Identities = 25/195 (12%), Positives = 41/195 (21%), Gaps = 36/195 (18%)
Query: 897 ALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVT 956
+ G G GKTTL+ + R R ++
Sbjct: 4 IITGEPGVGKTTLVKKIVERLG--KRAIGFWTEEV--------RDPETKKRTGFRIITTE 53
Query: 957 VYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLT 1016
+ + S + V + + E
Sbjct: 54 GKKKIFSSKFFTSKKLVGSYGVNVQYFE----------------------ELAIPILERA 91
Query: 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1076
+I +DE + D VV TI + E
Sbjct: 92 YREAKKDRRKVIIIDEIGKMELFS-KKFRDLVRQIMHDPNVNVVATIPIRDVHPL--VKE 148
Query: 1077 LLLLKRGGRVIYAGP 1091
+ L G +I P
Sbjct: 149 IRRLP-GAVLIELTP 162
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 3/82 (3%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
++ G PG GKTTL+ + +LGK + E + I+
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKR---AIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 261 TVRETLDFSGRCLGVGTRYELL 282
+ T GV +Y
Sbjct: 61 SKFFTSKKLVGSYGVNVQYFEE 82
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.9 bits (92), Expect = 8e-04
Identities = 22/63 (34%), Positives = 31/63 (49%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
LLLGPPGAGK T + LA KLG ++G++ E + Y+ DL ++
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 261 TVR 263
T
Sbjct: 64 TNE 66
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 38.8 bits (89), Expect = 0.001
Identities = 11/63 (17%), Positives = 19/63 (30%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLH 256
+RM +L G AGK+ ++ L L + A G + +
Sbjct: 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGV 62
Query: 257 HGE 259
Sbjct: 63 SIG 65
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Score = 39.6 bits (91), Expect = 0.002
Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 190 VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD-------LRASGKITYCGHEL-NEF 241
+ +V + L+ P GAGK+ L L LA ++ +G + Y E
Sbjct: 23 LPNMV-AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDPPTA 81
Query: 242 VPQRTCAYISQHDLHHGEMTVRETLDFS 269
+ R A + + L
Sbjct: 82 IHHRLHALGAHLSAEERQAVADGLLIQP 109
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 39.2 bits (90), Expect = 0.002
Identities = 12/47 (25%), Positives = 19/47 (40%)
Query: 175 HLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221
++ L V+ LL G PG+GKT+L A+ +
Sbjct: 10 QFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEET 56
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 39.3 bits (91), Expect = 0.003
Identities = 17/47 (36%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 180 KKRSVRILKD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDL 225
LK V I K R L GP +GKTTL AL G
Sbjct: 137 DSVVYDFLKCMVYNIPKK-RYWLFKGPIDSGKTTLAAALLELCGGKA 182
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 38.1 bits (87), Expect = 0.003
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITY 233
++ ++ GP G GK+T LA +L G I
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIIN 38
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.004
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 197 SRMTLLLGPPGAGKTTLMLALAGKLGKD 224
+R L GPPG GKTTL+ + L
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSS 28
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.6 bits (86), Expect = 0.004
Identities = 16/68 (23%), Positives = 25/68 (36%)
Query: 201 LLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEM 260
+L+GPPGAGK T L + A+G + + + Q L ++
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 261 TVRETLDF 268
V D
Sbjct: 66 MVNMIKDE 73
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.004
Identities = 11/79 (13%), Positives = 23/79 (29%)
Query: 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYI 250
G ++ +T + G GKT + LA + G + E +
Sbjct: 17 QGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLA 76
Query: 251 SQHDLHHGEMTVRETLDFS 269
V + + ++
Sbjct: 77 VAERYGLSGSDVLDNVAYA 95
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1389 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.83 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.64 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.52 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.37 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.22 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.1 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.95 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.89 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.87 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.58 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.81 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.8 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.79 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.69 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.64 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.61 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.58 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.42 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.36 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.34 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.19 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.07 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.05 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.01 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.0 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.99 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.96 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.9 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.86 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.76 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.74 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.71 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.71 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.68 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.68 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.67 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.66 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.61 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.61 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.58 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.56 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.51 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.51 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.51 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.48 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.48 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.46 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.46 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.45 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.43 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.41 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.39 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.35 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.32 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.3 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.25 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.22 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.21 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.2 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.19 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.17 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.16 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.13 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.12 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.12 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.11 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.09 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.08 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.07 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.01 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.0 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.0 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.99 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.99 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.98 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.98 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.97 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.92 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.92 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.9 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.9 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.9 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.88 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.87 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.86 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.86 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.85 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.84 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.84 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.84 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.83 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 95.83 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.82 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.8 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.76 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.76 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.74 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.74 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.74 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.74 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.73 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.73 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.69 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.69 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.65 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.62 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.62 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.61 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.6 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.6 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.6 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.56 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.55 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.54 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.54 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.51 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.51 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.46 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.46 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.46 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.41 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.41 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.39 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.38 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.37 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.35 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.31 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.29 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.28 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.25 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.25 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 95.24 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.24 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.23 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.23 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.16 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.15 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.14 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 95.1 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.09 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.08 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.08 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 95.08 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.05 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.04 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.04 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.01 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.98 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.98 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.97 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.94 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.91 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.88 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.88 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 94.8 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.78 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 94.72 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.7 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.68 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 94.67 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.66 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.66 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.61 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.57 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.49 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.48 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.47 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.46 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.43 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.41 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.41 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.38 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.31 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.27 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.26 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 94.23 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.23 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 94.23 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 94.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.19 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.18 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.18 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.18 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.18 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.17 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.14 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.1 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.06 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.06 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.03 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.03 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.0 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.0 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.97 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.94 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.91 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 93.86 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.86 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.85 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.84 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.83 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.82 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 93.8 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.8 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.79 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.78 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.76 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.74 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.72 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.72 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.72 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.68 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.68 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.67 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.67 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.58 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.54 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.53 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.53 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.49 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.49 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.47 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.42 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.41 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.39 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.39 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.36 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.35 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.33 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.31 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.3 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.23 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.22 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.15 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.13 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.13 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.08 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.04 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.02 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.0 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.99 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.96 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.96 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.92 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.9 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.89 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.89 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.83 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.79 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.74 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.66 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 92.65 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.64 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.63 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.63 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.62 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 92.59 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.57 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.56 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.51 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.51 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 92.5 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.44 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.44 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.39 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.39 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.38 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.36 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 92.36 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.33 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.3 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.29 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.25 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.21 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.19 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.17 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.1 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 92.08 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.08 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 92.05 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.05 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.05 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.02 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.99 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.97 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.97 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 91.93 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.88 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 91.85 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.84 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 91.83 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.8 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 91.76 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 91.7 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.7 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.62 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.58 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.56 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.54 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 91.54 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 91.51 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.5 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 91.44 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.43 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.35 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.31 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.27 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.21 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.2 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 91.18 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 91.18 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.17 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.07 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.05 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.03 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.02 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.01 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.95 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.9 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.87 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.86 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 90.84 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.81 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.75 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.75 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.71 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.62 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.61 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.51 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.49 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.47 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 90.44 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 90.44 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.43 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 90.42 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 90.37 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.29 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.28 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 90.24 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.19 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.11 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.09 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.07 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.0 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.97 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.93 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.91 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.89 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.84 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.7 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 89.57 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.56 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.51 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.48 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 89.45 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 89.4 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.4 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.32 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 89.26 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.26 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.25 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 89.23 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.16 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.95 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 88.86 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.83 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 88.72 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 88.68 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 88.66 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.61 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.6 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 88.48 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 88.23 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.2 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.09 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.08 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 88.07 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 88.07 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 87.9 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 87.83 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.8 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 87.78 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 87.73 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 87.67 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.52 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 87.48 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.42 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 87.4 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 87.35 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 87.24 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.82 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 86.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.67 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 86.52 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.41 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 86.22 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.19 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 86.14 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 85.99 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 85.72 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 85.54 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 85.48 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 85.46 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 85.32 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.21 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 85.15 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 85.0 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.09 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.89 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.79 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 83.72 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.72 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.7 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 83.54 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.47 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.42 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 83.23 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 82.37 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 82.23 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.83 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 81.57 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.59 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 80.41 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 80.23 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=325.93 Aligned_cols=213 Identities=24% Similarity=0.333 Sum_probs=142.8
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++..+ +...+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 4 i~v~nl~k~y-------------g~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p--~sG~I~~~g~~i~ 68 (240)
T d1g2912 4 VRLVDVWKVF-------------GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP--SRGQIYIGDKLVA 68 (240)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC--SEEEEEETTEEEE
T ss_pred EEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEEC
T ss_conf 8998699998-------------999998560668869989999999998099999999648788--9898999999803
Q ss_pred H-------HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 2-------312021668424897899999999999888730599983999999999999982995543333469988788
Q 000615 935 Q-------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1389)
Q Consensus 935 ~-------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 1007 (1389)
. ...++.+|||+|++.++|.+||+|++.|...++ ..+.++.+++++++++.++|.+..+..+. .|
T Consensus 69 ~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p~-----~L 140 (240)
T d1g2912 69 DPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----EL 140 (240)
T ss_dssp EGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GS
T ss_pred CCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCHH-----HC
T ss_conf 56644424532255120022122231011667633068772---99989999999999987599667629933-----49
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 998999999999996399972030799999999999999999998849-9879999568519999862718899169599
Q 000615 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1008 SgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG~~ 1086 (1389)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|+.+ ++...+|++++|. +|++
T Consensus 141 SGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~-~~~~~~drv~vm~-~G~i 218 (240)
T d1g2912 141 SGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMN-RGVL 218 (240)
T ss_dssp CHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEE
T ss_conf 9999999999999826998898258876569899989999999998636988999959999-9999699999998-9999
Q ss_pred EEECCC
Q ss_conf 993589
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~G~~ 1092 (1389)
+..|++
T Consensus 219 v~~G~~ 224 (240)
T d1g2912 219 QQVGSP 224 (240)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998599
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=332.54 Aligned_cols=207 Identities=25% Similarity=0.361 Sum_probs=129.1
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 167550177883883999985999967999999943939999840199997960799876-7328995479988999999
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~-~r~~aYV~Q~D~h~~~lTV 262 (1389)
.++|+|||+.+++|++++|+|||||||||||++|+|...++ +|+|.+||+++.+..+ +|.++||+|++.+++.+||
T Consensus 13 ~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv 89 (232)
T d2awna2 13 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 89 (232)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEESSSCCTTSCGGGTCEEEECSSCCC------
T ss_pred EEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHCEEEEECCCCCCCCCHHH
T ss_conf 99981117788699899999899982999999996587888---888999999778886444322234334202643337
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999720104776125677885599886199999118999999985111103469999998099643454335745667
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 rEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rG 342 (1389)
+||+.|+.++++... .| ....++.+++.++|++.+|..+.+
T Consensus 90 ~eni~~~~~~~~~~~----------~~------------------------~~~~v~~~l~~~~l~~~~~~~~~~----- 130 (232)
T d2awna2 90 AENMSFGLKLAGAKK----------EV------------------------INQRVNQVAEVLQLAHLLDRKPKA----- 130 (232)
T ss_dssp -------------------------CH------------------------HHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHCCCCH----------HH------------------------HHHHHHHHHHHCCCHHHHHCCHHH-----
T ss_conf 889789998759988----------99------------------------999999999757886566489656-----
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEE
Q ss_conf 88567668999999862996839846988999687999999999998828975999981492138852386999749818
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~i 422 (1389)
|||||||||+||++|+.+|++++|||||+|||+.++.+|++.|+++.+..+.|++++.|. ..++..++|+|++|.+|++
T Consensus 131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd-~~~a~~~~dri~vm~~G~i 209 (232)
T d2awna2 131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRV 209 (232)
T ss_dssp ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESC-HHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHCCEEEEEECCEE
T ss_conf 999999999999997039988997588878898899899999999987429879999489-9999996999999979999
Q ss_pred EEECCHHHHHH
Q ss_conf 99639567999
Q 000615 423 VYQGPRDNVLE 433 (1389)
Q Consensus 423 vy~Gp~~~~~~ 433 (1389)
+.+|+++++.+
T Consensus 210 v~~G~~~el~~ 220 (232)
T d2awna2 210 AQVGKPLELYH 220 (232)
T ss_dssp EEEECHHHHHH
T ss_pred EEEECHHHHHH
T ss_conf 99808999973
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=325.27 Aligned_cols=206 Identities=24% Similarity=0.362 Sum_probs=130.6
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCH
Q ss_conf 167550177883883999985999967999999943939999840199997960799876-7328995479988999999
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~-~r~~aYV~Q~D~h~~~lTV 262 (1389)
..+|+|||+.+++|++++|+||||||||||+++|+|.+.++ +|+|.+||+++....+ +|.++||+|++.+++.+||
T Consensus 19 ~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~---sG~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 95 (239)
T d1v43a3 19 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 95 (239)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEECCCCCCCCCEEEEEEECHHHCCCCHH
T ss_conf 99981306788799899999999982999999997589998---787999164135477000158998003353422209
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999720104776125677885599886199999118999999985111103469999998099643454335745667
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 rEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rG 342 (1389)
+||+.|.++.++.. +.|. ...++.+++.+||++.+|..+..
T Consensus 96 ~enl~~~~~~~~~~----------~~~~------------------------~~~~~~~l~~~~l~~~~~~~~~~----- 136 (239)
T d1v43a3 96 YENIAFPLKIKKFP----------KDEI------------------------DKRVRWAAELLQIEELLNRYPAQ----- 136 (239)
T ss_dssp HHHHHTTCC--CCC----------HHHH------------------------HHHHHHHHHHTTCGGGTTSCTTT-----
T ss_pred HHHHHHHHHHCCCC----------HHHH------------------------HHHHHHHHHHCCCHHHHCCCHHH-----
T ss_conf 99999999873999----------9999------------------------99999999875985566099546-----
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEE
Q ss_conf 88567668999999862996839846988999687999999999998828975999981492138852386999749818
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~i 422 (1389)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.++++.+..+.|++++.|.. .++..++|+|++|.+|++
T Consensus 137 LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~i 215 (239)
T d1v43a3 137 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQL 215 (239)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEE
T ss_conf 9999988999976640499824306886668989998999999999873198079994899-999986999999989999
Q ss_pred EEECCHHHHH
Q ss_conf 9963956799
Q 000615 423 VYQGPRDNVL 432 (1389)
Q Consensus 423 vy~Gp~~~~~ 432 (1389)
+.+|+.+++.
T Consensus 216 v~~G~~~el~ 225 (239)
T d1v43a3 216 LQIGSPTEVY 225 (239)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
T ss_conf 9985999998
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=328.85 Aligned_cols=214 Identities=22% Similarity=0.345 Sum_probs=188.5
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 67883340135335221124656565155102035884781999964689946789964529988963799999959038
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++.++ +...+|+|||+.+++||+++|+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~I~v~nlsk~y-------------g~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p--~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF-------------GNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP--TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 49998799999-------------999998130678879989999999998299999999758999--878799916413
Q ss_pred CH-HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 82-31202166842489789999999999988873059998399999999999998299554333346998878899899
Q 000615 934 NQ-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 934 ~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqr 1012 (1389)
.. ...+|.+|||+|++.++|.+||+|++.|.+.++ ..+.++.++.++++++.++|.+..+..+ ..||||||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~ 142 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQR 142 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCH
T ss_pred CCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHH
T ss_conf 547700015899800335342220999999999873---9999999999999998759855660995-----46999998
Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 9999999996399972030799999999999999999998849-987999956851999986271889916959999358
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1013 krl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~ 1091 (1389)
||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|++. +..+.+|++++|. +|+++..|+
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~ 220 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMN-RGQLLQIGS 220 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEEC
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 89999766404998243068866689899989999999998731980799948999-9998699999998-999999859
Q ss_pred C
Q ss_conf 9
Q 000615 1092 L 1092 (1389)
Q Consensus 1092 ~ 1092 (1389)
+
T Consensus 221 ~ 221 (239)
T d1v43a3 221 P 221 (239)
T ss_dssp H
T ss_pred H
T ss_conf 9
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=330.66 Aligned_cols=213 Identities=27% Similarity=0.365 Sum_probs=185.4
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++.++ +...+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 1 Iev~nv~k~y-------------g~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p--~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW-------------GEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI--TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEESSSCCT
T ss_pred CEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 9999999998-------------999998111778869989999989998299999999658788--8888999999778
Q ss_pred H-HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2-312021668424897899999999999888730599983999999999999982995543333469988788998999
Q 000615 935 Q-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 935 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrk 1013 (1389)
. ...+|.+|||+|++.++|.+||+|++.|...++. .+.++.+++++++++.++|.+..+..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~LSGGqkQ 137 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQ 137 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHH
T ss_conf 886444322234334202643337889789998759---9889999999999975788656648965-----69999999
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999639997203079999999999999999999884-99879999568519999862718899169599993589
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1014 rl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++...+|++++|. +|+++..|++
T Consensus 138 RvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~-~a~~~~dri~vm~-~G~iv~~G~~ 215 (232)
T d2awna2 138 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLD-AGRVAQVGKP 215 (232)
T ss_dssp --CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999703998899758887889889989999999998742987999948999-9999699999997-9999998089
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=321.95 Aligned_cols=209 Identities=25% Similarity=0.405 Sum_probs=174.0
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5167550177883883999985999967999999943939999840199997960799876---7328995479988999
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~~ 259 (1389)
...+|+|||+.+++|+.++|+||||||||||+++|+|.+++. +|+|.+||+++.+... ++.++||+|++.++ .
T Consensus 15 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf-~ 90 (241)
T d2pmka1 15 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL-N 90 (241)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCT-T
T ss_pred CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCC---CCEEEECCEEECCCCHHHHHCEEEEEECCCCCC-C
T ss_conf 960374248998499999999999998999999997357888---889999999944002465535288982446557-8
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999720104776125677885599886199999118999999985111103469999998099643454335745
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~ 339 (1389)
.||+||+.|+..- .+.+...+++...+.. + .+..++...||.+|..
T Consensus 91 ~Ti~eNi~~~~~~-------------------------~~~~~~~~~~~~~~~~-----~---~i~~~~~~~~t~i~~~- 136 (241)
T d2pmka1 91 RSIIDNISLANPG-------------------------MSVEKVIYAAKLAGAH-----D---FISELREGYNTIVGEQ- 136 (241)
T ss_dssp SBHHHHHCTTSTT-------------------------CCHHHHHHHHHHHTCH-----H---HHTTSTTGGGSBCSTT-
T ss_pred CCCCCCCCCCCCC-------------------------CCHHHHHHHHHHHHHH-----H---HHHHHHCCHHHHCCCC-
T ss_conf 4000352235755-------------------------4388899999997557-----8---8876320134432787-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECC
Q ss_conf 66788567668999999862996839846988999687999999999998828975999981492138852386999749
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~ 419 (1389)
...|||||||||+|||+++.+|++++||||||+||+.++.+|.+.|+++.+ ++|+|+..|.+ +....+|+|++|.+
T Consensus 137 g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~ 212 (241)
T d2pmka1 137 GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL--STVKNADRIIVMEK 212 (241)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG--GGGTTSSEEEEEET
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEEC
T ss_conf 886698898987544344416513556477655598999999999999858--99899997889--99984999999989
Q ss_pred CEEEEECCHHHHHH
Q ss_conf 81899639567999
Q 000615 420 GQIVYQGPRDNVLE 433 (1389)
Q Consensus 420 G~ivy~Gp~~~~~~ 433 (1389)
|+++++|+++++++
T Consensus 213 G~Iv~~G~~~ell~ 226 (241)
T d2pmka1 213 GKIVEQGKHKELLS 226 (241)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHH
T ss_conf 99999889999982
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=325.14 Aligned_cols=201 Identities=24% Similarity=0.350 Sum_probs=143.9
Q ss_pred EEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCHHH
Q ss_conf 7550177883883999985999967999999943939999840199997960799876-732899547998899999999
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRE 264 (1389)
Q Consensus 186 IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~-~r~~aYV~Q~D~h~~~lTVrE 264 (1389)
+|+|||+.+++|++++|+||||||||||+++|+|..+++ +|+|.++|+++.+..+ +|.++||+|+..++|.+||+|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~---sG~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~e 91 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCCHHHHCCEEECCCCCCCCCCCHHH
T ss_conf 884337898799899999899982999999996476888---78899956734652165740561512111174665778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99972010477612567788559988619999911899999998511110346999999809964345433574566788
Q 000615 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1389)
Q Consensus 265 tL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rGLS 344 (1389)
|+.|+.+.++... ...++.+++.+||++-.|..+++ ||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~~~~~l~~~~l~~~~~~~~~~-----LS 129 (229)
T d3d31a2 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNPLT-----LS 129 (229)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCGGG-----SC
T ss_pred HHHHHHHHCCCCH-------------------------------------HHHHHHHHHHHCCHHHHHCCHHH-----CC
T ss_conf 8888776405538-------------------------------------99999999982565557589554-----79
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEEEE
Q ss_conf 56766899999986299683984698899968799999999999882897599998149213885238699974981899
Q 000615 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVY 424 (1389)
Q Consensus 345 GGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~ivy 424 (1389)
|||||||+||++|+.+|++|+|||||+|||+.++.++.+.++++.+..+.|++++.|.. .++.+++|+|++|.+|++++
T Consensus 130 GG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~ 208 (229)
T d3d31a2 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQ 208 (229)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEE
T ss_pred HHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEEEEECCEEEE
T ss_conf 99840140304344367714434787679989999999999999864796899974999-99999699999997999999
Q ss_pred ECCHHHHH
Q ss_conf 63956799
Q 000615 425 QGPRDNVL 432 (1389)
Q Consensus 425 ~Gp~~~~~ 432 (1389)
+|+++++.
T Consensus 209 ~g~~~el~ 216 (229)
T d3d31a2 209 VGKPEEIF 216 (229)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
T ss_conf 86999998
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=324.22 Aligned_cols=207 Identities=28% Similarity=0.360 Sum_probs=182.1
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC-------CCCEEEEECCCCCC
Q ss_conf 16755017788388399998599996799999994393999984019999796079987-------67328995479988
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV-------PQRTCAYISQHDLH 256 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~-------~~r~~aYV~Q~D~h 256 (1389)
..+|+|||+.+++|++++|+||||||||||+++|+|...++ +|+|.+||.++.... .++.++||+|++.+
T Consensus 16 ~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L 92 (240)
T d1g2912 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEECCCCHHHHCCCCCCCCEECCCCHHH
T ss_conf 99985606688699899999999980999999996487889---898999999803566444245322551200221222
Q ss_pred CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999999720104776125677885599886199999118999999985111103469999998099643454335
Q 000615 257 HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVG 336 (1389)
Q Consensus 257 ~~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG 336 (1389)
+|.+||+||+.|..+.++.. +.|. ...++.+++.+||++.+|..++
T Consensus 93 ~~~ltV~eni~~~~~~~~~~----------~~e~------------------------~~~v~~~l~~~~l~~~~~~~p~ 138 (240)
T d1g2912 93 YPHMTVYDNIAFPLKLRKVP----------RQEI------------------------DQRVREVAELLGLTELLNRKPR 138 (240)
T ss_dssp CTTSCHHHHHHHHHHHTTCC----------HHHH------------------------HHHHHHHHHHHTCGGGTTCCGG
T ss_pred CCHHHHHHHHHHHHHHCCCC----------HHHH------------------------HHHHHHHHHHCCCHHHHCCCHH
T ss_conf 31011667633068772999----------8999------------------------9999999987599667629933
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEE
Q ss_conf 74566788567668999999862996839846988999687999999999998828975999981492138852386999
Q 000615 337 DEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 337 ~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~Iil 416 (1389)
+ |||||||||+||++|+.+|++|+|||||+|||+.++.+|++.++++.+..+.|+|++.|. .+++..++|+|++
T Consensus 139 ~-----LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-~~~~~~~~drv~v 212 (240)
T d1g2912 139 E-----LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD-QVEAMTMGDRIAV 212 (240)
T ss_dssp G-----SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESC-HHHHHHHCSEEEE
T ss_pred H-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEEEE
T ss_conf 4-----999999999999998269988982588765698999899999999986369889999599-9999996999999
Q ss_pred ECCCEEEEECCHHHHHH
Q ss_conf 74981899639567999
Q 000615 417 LSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 417 Ls~G~ivy~Gp~~~~~~ 433 (1389)
|.+|++++.|+++++.+
T Consensus 213 m~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 213 MNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp EETTEEEEEECHHHHHH
T ss_pred EECCEEEEECCHHHHHH
T ss_conf 98999999859999982
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=324.11 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=179.5
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++.++... ....++|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y~~~---------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p--~sG~I~~~g~~i~ 70 (240)
T d3dhwc1 2 IKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP--TEGSVLVDGQELT 70 (240)
T ss_dssp EEEEEEEEEEECS---------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC--SEEEEEETTEEEC
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCC--CCCCEEECCEEEE
T ss_conf 7998279996999---------8148986150578869979999899989888999987588636--6773288676852
Q ss_pred ---H---HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---2---3120216684248978999999999998887305999839999999999999829955433334699887889
Q 000615 935 ---Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 935 ---~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LS 1008 (1389)
. ..+++.+|||+|+..++|.+||+|++.|...++. .+.++.++.++++++.++|.+..+..+. .||
T Consensus 71 ~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~~-----~LS 142 (240)
T d3dhwc1 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 142 (240)
T ss_dssp TTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCBS-----CCC
T ss_pred ECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCCHHHHCCHH-----HCC
T ss_conf 08755511554166430225222799649999999999849---9989999999999997699035548943-----499
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEE
Q ss_conf 98999999999996399972030799999999999999999998849-98799995685199998627188991695999
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVI 1087 (1389)
Q Consensus 1009 gGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~ 1087 (1389)
||||||++||++|+.+|++|++||||+|||+.++..|++.++++.++ |.|||+++|+.. ++...+|++++|. +|+++
T Consensus 143 GG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~-~~~~~~dri~vl~-~G~iv 220 (240)
T d3dhwc1 143 GGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVIS-NGELI 220 (240)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHH-HHHHHCSEEEEEE-TTEEE
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEE
T ss_conf 999989998640105898687446556589888567999999998646978999838999-9998699999997-99999
Q ss_pred EECCCC
Q ss_conf 935898
Q 000615 1088 YAGPLG 1093 (1389)
Q Consensus 1088 ~~G~~~ 1093 (1389)
+.|++.
T Consensus 221 ~~G~~~ 226 (240)
T d3dhwc1 221 EQDTVS 226 (240)
T ss_dssp EEEETT
T ss_pred EECCHH
T ss_conf 987999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=325.50 Aligned_cols=206 Identities=24% Similarity=0.327 Sum_probs=98.6
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC------CCCEEEEECCCCCCC
Q ss_conf 16755017788388399998599996799999994393999984019999796079987------673289954799889
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV------PQRTCAYISQHDLHH 257 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~------~~r~~aYV~Q~D~h~ 257 (1389)
..+|+|||+.+++||+++|+||||||||||+++|+|..+++ +|+|.++|.++.... .+|.++||.|+..++
T Consensus 18 ~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~---~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~ 94 (242)
T d1oxxk2 18 VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALY 94 (242)
T ss_dssp EEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCC
T ss_pred EEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEEEECCCHHHCCHHHCCCEEEECCCCCC
T ss_conf 89980407898799899999899980999999997586888---745999999951373111531204514773043346
Q ss_pred CCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99999999997201047761256778855998861999991189999999851111034699999980996434543357
Q 000615 258 GEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGD 337 (1389)
Q Consensus 258 ~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~ 337 (1389)
|.+||+||+.|+.+..+.. +.+ ....++.+++.+||++.+|..+++
T Consensus 95 p~ltv~eni~~~l~~~~~~----------~~~------------------------~~~~v~~~l~~~gL~~~~~~~p~~ 140 (242)
T d1oxxk2 95 PNLTAFENIAFPLTNMKMS----------KEE------------------------IRKRVEEVAKILDIHHVLNHFPRE 140 (242)
T ss_dssp TTSCHHHHHHGGGTTSSCC----------HHH------------------------HHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred CCCCHHHHHHHHHHHHCCC----------HHH------------------------HHHHHHHHHHHCCHHHHHHCCHHH
T ss_conf 6665777766556761379----------999------------------------999999998665917666489545
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEE
Q ss_conf 45667885676689999998629968398469889996879999999999988289759999814921388523869997
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilL 417 (1389)
|||||||||+|||+|+.+|+++++||||+|||+.++.++++.++++.+..+.|+++..|.+ .++.+++|+|++|
T Consensus 141 -----LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm 214 (242)
T d1oxxk2 141 -----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVL 214 (242)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHCCEEEEE
T ss_conf -----9999985899875776046614544786679989988998999999863598799997999-9999969999999
Q ss_pred CCCEEEEECCHHHHH
Q ss_conf 498189963956799
Q 000615 418 SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 418 s~G~ivy~Gp~~~~~ 432 (1389)
.+|+++..|+++++.
T Consensus 215 ~~G~iv~~g~~~el~ 229 (242)
T d1oxxk2 215 VKGKLVQVGKPEDLY 229 (242)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
T ss_conf 899999986999998
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=320.24 Aligned_cols=219 Identities=24% Similarity=0.402 Sum_probs=182.0
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++.+++.. .....+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 I~i~nlsk~y~~~---------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p--~sG~I~~~g~~i~ 70 (230)
T d1l2ta_ 2 IKLKNVTKTYKMG---------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTN 70 (230)
T ss_dssp EEEEEEEEEEEET---------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEECCC---------CEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCC--CCCEEEECCEECC
T ss_conf 8999079994899---------8208987133778849979999889999821655750688777--7662699999857
Q ss_pred H---HH---H-HHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 2---31---2-0216684248978999999999998887305999839999999999999829955-4333346998878
Q 000615 935 Q---ET---F-ARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKS-LNDSMVGLPGVSG 1006 (1389)
Q Consensus 935 ~---~~---~-~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-~~~~~vg~~~~~~ 1006 (1389)
. .. + ++.+|||+|++.+.|.+||.|++.+...++.....+.+++.+.+.+.++.++|.+ ..+..+ ..
T Consensus 71 ~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p-----~~ 145 (230)
T d1l2ta_ 71 DLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQ 145 (230)
T ss_dssp TCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GG
T ss_pred CCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCH-----HH
T ss_conf 6885551231255577880412417686688877578887224789999999999998876242345534880-----23
Q ss_pred CCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCE
Q ss_conf 8998999999999996399972030799999999999999999998849-987999956851999986271889916959
Q 000615 1007 LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGR 1085 (1389)
Q Consensus 1007 LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG~ 1085 (1389)
||||||||++||++|+.+|++|+|||||+|||+.++..|+++++++.++ |.|||+++|++ ++...+|++++|. +|+
T Consensus 146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~drv~~m~-~G~ 222 (230)
T d1l2ta_ 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLK-DGE 222 (230)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSEEEEEE-TTE
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCEEEEEE-CCE
T ss_conf 8999999999875652278889946876546989999999999999984399999987888--9998699899998-999
Q ss_pred EEEECCC
Q ss_conf 9993589
Q 000615 1086 VIYAGPL 1092 (1389)
Q Consensus 1086 ~~~~G~~ 1092 (1389)
++..|++
T Consensus 223 Iv~~g~~ 229 (230)
T d1l2ta_ 223 VEREEKL 229 (230)
T ss_dssp EEEEEEC
T ss_pred EEEECCC
T ss_conf 9995257
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=325.22 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=187.9
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 67883340135335221124656565155102035884781999964689946789964529988963799999959038
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~ 933 (1389)
.++++|++++++ .+...+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~-----------~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p--~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFK-----------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP--STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEG-----------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC--SEEEEEETTEEE
T ss_pred EEEEEEEEEEEC-----------CCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEE
T ss_conf 899975799988-----------9998998040789879989999989998099999999758688--874599999995
Q ss_pred CH------HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 82------312021668424897899999999999888730599983999999999999982995543333469988788
Q 000615 934 NQ------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGL 1007 (1389)
Q Consensus 934 ~~------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~L 1007 (1389)
.. ...+|.+|||+|+..++|.+||+|++.|....+ ..+.++.+++++++++.++|.+..+..++ .|
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~-----~L 141 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred ECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH-----HC
T ss_conf 13731115312045147730433466665777766556761---37999999999999866591766648954-----59
Q ss_pred CHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEE
Q ss_conf 998999999999996399972030799999999999999999998849-9879999568519999862718899169599
Q 000615 1008 STEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRV 1086 (1389)
Q Consensus 1008 SgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG~~ 1086 (1389)
|||||||++||++|+.+|++|+|||||+|||+.++..+++.++++.++ |.|||+++|+++ ++.+.+|++++|. +|++
T Consensus 142 SGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~-~~~~~~dri~vm~-~G~i 219 (242)
T d1oxxk2 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLV-KGKL 219 (242)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEE-TTEE
T ss_pred CHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEE
T ss_conf 9999858998757760466145447866799899889989999998635987999979999-9999699999998-9999
Q ss_pred EEECCC
Q ss_conf 993589
Q 000615 1087 IYAGPL 1092 (1389)
Q Consensus 1087 ~~~G~~ 1092 (1389)
+..|++
T Consensus 220 v~~g~~ 225 (242)
T d1oxxk2 220 VQVGKP 225 (242)
T ss_dssp EEEECH
T ss_pred EEECCH
T ss_conf 998699
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=320.92 Aligned_cols=209 Identities=25% Similarity=0.334 Sum_probs=182.4
Q ss_pred CCCCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC------CCEEEEECCCC
Q ss_conf 665167550177883883999985999967999999943939999840199997960799876------73289954799
Q 000615 181 KRSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP------QRTCAYISQHD 254 (1389)
Q Consensus 181 ~~~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~------~r~~aYV~Q~D 254 (1389)
+...++|+|||+.+++|++++|+|||||||||||++|+|..+++ +|+|.++|+++..... ++.++||+|+.
T Consensus 15 ~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~---sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~ 91 (240)
T d3dhwc1 15 TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHF 91 (240)
T ss_dssp SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCS---EEEEEETTEEECTTCHHHHHHHHHHEEECCSSC
T ss_pred CEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCC---CCCEEECCEEEEECCHHHHHHHHCCCCCCCCCC
T ss_conf 81489861505788699799998999898889999875886366---773288676852087555115541664302252
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 88999999999997201047761256778855998861999991189999999851111034699999980996434543
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTM 334 (1389)
Q Consensus 255 ~h~~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~ 334 (1389)
.+++.+||+||+.|..+..+... .+. ...++.+++.+||++-+|..
T Consensus 92 ~l~~~~tv~eni~~~l~~~~~~~--------------------~~~--------------~~~v~~~L~~vgL~~~~~~~ 137 (240)
T d3dhwc1 92 NLLSSRTVFGNVALPLELDNTPK--------------------DEV--------------KRRVTELLSLVGLGDKHDSY 137 (240)
T ss_dssp CCCTTSBHHHHHHHHHHTTTCCT--------------------THH--------------HHHHHHHHHHHSTTTTTSSC
T ss_pred CCCCCCCHHHHHHHHHHHCCCCH--------------------HHH--------------HHHHHHHHHHCCCCHHHHCC
T ss_conf 22799649999999999849998--------------------999--------------99999999976990355489
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEE
Q ss_conf 35745667885676689999998629968398469889996879999999999988289759999814921388523869
Q 000615 335 VGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDI 414 (1389)
Q Consensus 335 VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~I 414 (1389)
+++ |||||||||+||++|+.+|++|++||||+|||+.++.+|++.|+++.+..+.|+++..|. ..++..++|+|
T Consensus 138 ~~~-----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd-l~~~~~~~dri 211 (240)
T d3dhwc1 138 PSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE-MDVVKRICDCV 211 (240)
T ss_dssp BSC-----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC-HHHHHHHCSEE
T ss_pred HHH-----CCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC-HHHHHHHCCEE
T ss_conf 434-----999999899986401058986874465565898885679999999986469789998389-99999869999
Q ss_pred EEECCCEEEEECCHHHHH
Q ss_conf 997498189963956799
Q 000615 415 ILLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 415 ilLs~G~ivy~Gp~~~~~ 432 (1389)
++|.+|++++.|+.+++.
T Consensus 212 ~vl~~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 212 AVISNGELIEQDTVSEVF 229 (240)
T ss_dssp EEEETTEEEEEEETTTTT
T ss_pred EEEECCEEEEECCHHHHH
T ss_conf 999799999987999997
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=319.26 Aligned_cols=213 Identities=23% Similarity=0.359 Sum_probs=175.3
Q ss_pred CCCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCC
Q ss_conf 65167550177883883999985999967999999943939999840199997960799876---732899547998899
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (1389)
Q Consensus 182 ~~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~ 258 (1389)
....+|+|||+.+++|++++|+||||||||||+++|+|.+++. +|+|.+||.++.+... ++.++||+|++.+++
T Consensus 25 ~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~ 101 (251)
T d1jj7a_ 25 PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT---GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG 101 (251)
T ss_dssp TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS
T ss_pred CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9997674438998499899999999984999999986143787---6899889985311013788877654045650027
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999972010477612567788559988619999911899999998511110346999999809964345433574
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~ 338 (1389)
.||+||+.|+..-.. ..+...++....+ ..-.+..|++..||.+|.
T Consensus 102 -~tv~eni~~g~~~~~------------------------~~~~~~~~~~~~~--------~~~~i~~l~~g~~~~i~~- 147 (251)
T d1jj7a_ 102 -RSLQENIAYGLTQKP------------------------TMEEITAAAVKSG--------AHSFISGLPQGYDTEVDE- 147 (251)
T ss_dssp -SBHHHHHHCSCSSCC------------------------CHHHHHHHHHHHT--------CHHHHHTSTTGGGCBCCS-
T ss_pred -CCHHHHHHHHHCCCC------------------------HHHHHHHHHHHHH--------HHHHHHHCCCCCHHHHHC-
T ss_conf -634655454210130------------------------2788999999998--------999998561211136751-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEEC
Q ss_conf 56678856766899999986299683984698899968799999999999882897599998149213885238699974
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs 418 (1389)
....|||||||||+|||+++.+|++++||||||+||+.+..+|.+.|+++.+..++|+++..|.. +..+.+|+|++|.
T Consensus 148 ~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l--~~~~~aDrI~vl~ 225 (251)
T d1jj7a_ 148 AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL--SLVEQADHILFLE 225 (251)
T ss_dssp SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH--HHHHTCSEEEEEE
T ss_pred CCCCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEEE
T ss_conf 67668954704899860445687078716757656853689999999997650698999995979--9998599999998
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 981899639567999
Q 000615 419 EGQIVYQGPRDNVLE 433 (1389)
Q Consensus 419 ~G~ivy~Gp~~~~~~ 433 (1389)
+|+++++|+++++++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHH
T ss_conf 999999889999985
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=320.60 Aligned_cols=229 Identities=25% Similarity=0.398 Sum_probs=184.5
Q ss_pred CCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCH
Q ss_conf 99896179993029999973388767870599999999985210345787665167550177883883999985999967
Q 000615 131 IEIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGK 210 (1389)
Q Consensus 131 ~~~p~i~v~~~~l~v~~~~~~~~~~~pt~~n~~~~~~~~~~~~~~~~~~~~~~~~IL~~VSg~i~pG~ltaIlGpsGSGK 210 (1389)
++.++-+++++|+++.- .....++|+|||+.+++|+.++|+|||||||
T Consensus 10 l~~~~g~I~~~nvsf~Y--------------------------------~~~~~~vL~~isl~i~~Ge~vaivG~sGsGK 57 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQY--------------------------------NDNEAPILKDINLSIEKGETVAFVGMSGGGK 57 (255)
T ss_dssp CCCCSCCEEEEEEEECS--------------------------------CSSSCCSEEEEEEEECTTCEEEEECSTTSSH
T ss_pred CCCCCCEEEEEEEEEEE--------------------------------CCCCCCCEECEEEEECCCCEEEEECCCCCCH
T ss_conf 77778879999889995--------------------------------9999760644389983998999988999809
Q ss_pred HHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 999999943939999840199997960799876---73289954799889999999999972010477612567788559
Q 000615 211 TTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSR 287 (1389)
Q Consensus 211 STLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~ 287 (1389)
|||+++|+|.+++. +|+|.+||.++.+... ++.++||+|++.+++ .||+||+.|+...
T Consensus 58 STLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~--------------- 118 (255)
T d2hyda1 58 STLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT--------------- 118 (255)
T ss_dssp HHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS---------------
T ss_pred HHHHHHHHHCCCCC---CCCCCCCCEECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCCCC---------------
T ss_conf 99999997127863---0001539987530788886341456510156899-8799998515867---------------
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98861999991189999999851111034699999980996434543357456678856766899999986299683984
Q 000615 288 REKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMD 367 (1389)
Q Consensus 288 ~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLD 367 (1389)
...++..+++...+.. + .+..|++..||.+|+. ...||||||||++|||+++.+|++++||
T Consensus 119 ----------~~~~~~~~al~~~~l~-----~---~i~~lp~gl~t~i~~~-g~~LSgGq~QRi~iARal~~~p~ililD 179 (255)
T d2hyda1 119 ----------ATDEEVVEAAKMANAH-----D---FIMNLPQGYDTEVGER-GVKLSGGQKQRLSIARIFLNNPPILILD 179 (255)
T ss_dssp ----------CCHHHHHHHHHHTTCH-----H---HHHTSTTGGGCBCCGG-GTTSCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred ----------CCHHHHHHHHHHHCCH-----H---HHHHCCCCCCCHHCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf ----------9999999999996979-----9---9973624201033388-8984999999999999985599899983
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 698899968799999999999882897599998149213885238699974981899639567999
Q 000615 368 EISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 368 EpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~ivy~Gp~~~~~~ 433 (1389)
||||+||+.++..|.+.|+++.+ ++|+|+..|.+ +....+|+|++|.+|+++.+|+++++++
T Consensus 180 Epts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~--~~~~~~D~ii~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 180 EATSALDLESESIIQEALDVLSK--DRTTLIVAHRL--STITHADKIVVIENGHIVETGTHRELIA 241 (255)
T ss_dssp STTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 76544797799999999998753--88899996899--9998599999998999999889999986
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=317.13 Aligned_cols=213 Identities=21% Similarity=0.310 Sum_probs=170.0
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
+..+|++..+ +++.+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 I~v~nl~k~y-------------g~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p--~~G~i~i~G~~i~ 67 (238)
T d1vpla_ 3 VVVKDLRKRI-------------GKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP--SSGIVTVFGKNVV 67 (238)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEETT
T ss_pred EEEEEEEEEE-------------CCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 8999589999-------------999998062568848979999999999999999999669887--8887999867244
Q ss_pred --HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf --231202166842489789999999999988873059998399999999999998299554333346998878899899
Q 000615 935 --QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQR 1012 (1389)
Q Consensus 935 --~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqr 1012 (1389)
....++.+|||+|++..++.+|+.|++.|.+.++. .+..+..+.++++++.++|.+..+..++ .||||||
T Consensus 68 ~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lSgG~~ 139 (238)
T d1vpla_ 68 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 139 (238)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred CCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHH-----HCCHHHH
T ss_conf 6839887218675001546878667788898998617---9989999999999986797888850453-----3799898
Q ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999963999720307999999999999999999988499879999568519999862718899169599993589
Q 000615 1013 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1013 krl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
||++||++|+.+|++|+|||||+|||+.++..+++++++++++|+||++++|+++ ++...||++++|. +|++++.|++
T Consensus 140 qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~-~~~~~~drv~vl~-~G~iv~~g~~ 217 (238)
T d1vpla_ 140 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIH-NGTIVETGTV 217 (238)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEE-TTEEEEEEEH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 9999999986599988733798897989999999999999965998999959899-9999699999998-9999999289
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=319.02 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=181.4
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|+++.+ +. .+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 i~v~nlsk~y-------------~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p--~sG~I~~~G~~i~ 65 (229)
T d3d31a2 2 IEIESLSRKW-------------KN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP--DSGRILLDGKDVT 65 (229)
T ss_dssp EEEEEEEEEC-------------SS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC--SEEEEEETTEECT
T ss_pred EEEEEEEEEE-------------CC-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECC
T ss_conf 8999899994-------------99-788433789879989999989998299999999647688--8788999567346
Q ss_pred H-HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 2-312021668424897899999999999888730599983999999999999982995543333469988788998999
Q 000615 935 Q-ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRK 1013 (1389)
Q Consensus 935 ~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrk 1013 (1389)
. ...+|.+|||+|++.++|.+||+|++.|...++...+ +++++++++.+++.+..|..+. .|||||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~~~------~~~~~~~l~~~~l~~~~~~~~~-----~LSGG~~Q 134 (229)
T d3d31a2 66 DLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKD------PKRVLDTARDLKIEHLLDRNPL-----TLSGGEQQ 134 (229)
T ss_dssp TSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCCCC------HHHHHHHHHHTTCTTTTTSCGG-----GSCHHHHH
T ss_pred CCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCCCCH------HHHHHHHHHHHCCHHHHHCCHH-----HCCHHHHC
T ss_conf 521657405615121111746657788888776405538------9999999998256555758955-----47999840
Q ss_pred HHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999639997203079999999999999999999884-99879999568519999862718899169599993589
Q 000615 1014 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1014 rl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
|++||++|+.+|++|+|||||+|||+.++..+++.++++.+ .|.|||+++|++. ++.+.+|++++|. +|+++..|++
T Consensus 135 RvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~-~~~~~~drv~vm~-~G~iv~~g~~ 212 (229)
T d3d31a2 135 RVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVM-DGKLIQVGKP 212 (229)
T ss_dssp HHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEES-SSCEEEEECH
T ss_pred CHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-HHHHHCCEEEEEE-CCEEEEECCH
T ss_conf 1403043443677144347876799899999999999998647968999749999-9999699999997-9999998699
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=312.34 Aligned_cols=206 Identities=21% Similarity=0.250 Sum_probs=175.3
Q ss_pred CCCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC-------CEEEEECCCC
Q ss_conf 651675501778838839999859999679999999439399998401999979607998767-------3289954799
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ-------RTCAYISQHD 254 (1389)
Q Consensus 182 ~~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~-------r~~aYV~Q~D 254 (1389)
....+|+|||+.+++|++++|+|||||||||||++|+|...++ +|+|.++|+++.....+ +.++||.|+.
T Consensus 16 ~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~---sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~ 92 (230)
T d1l2ta_ 16 EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQF 92 (230)
T ss_dssp EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTC
T ss_pred EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCC---CCEEEECCEECCCCCHHHCCHHHCCEEEEEECCH
T ss_conf 2089871337788499799998899998216557506887777---6626999998576885551231255577880412
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC-CCCC
Q ss_conf 889999999999972010477612567788559988619999911899999998511110346999999809964-3454
Q 000615 255 LHHGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDI-CADT 333 (1389)
Q Consensus 255 ~h~~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~-~~dT 333 (1389)
.++|.+||+||+.|+...+..+.. +..+. ...+...++.+||++ .+|.
T Consensus 93 ~l~~~~tv~eni~~~~~~~~~~~~-------~~~~~------------------------~~~~~~~l~~~~L~~~~~~~ 141 (230)
T d1l2ta_ 93 NLIPLLTALENVELPLIFKYRGAM-------SGEER------------------------RKRALECLKMAELEERFANH 141 (230)
T ss_dssp CCCTTSCHHHHHHHHHHTCCSSCC-------CHHHH------------------------HHHHHHHHHHTTCCGGGTTC
T ss_pred HHCCCCCHHHHHHHHHHHHCCCCC-------CHHHH------------------------HHHHHHHHHHHCHHHHHHCC
T ss_conf 417686688877578887224789-------99999------------------------99999988762423455348
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCE
Q ss_conf 33574566788567668999999862996839846988999687999999999998828975999981492138852386
Q 000615 334 MVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDD 413 (1389)
Q Consensus 334 ~VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~ 413 (1389)
.+.. |||||||||+||+||+.+|++|++||||+|||+.++.+|++.|+++.+..+.|+|+..|.+ +....+|+
T Consensus 142 ~p~~-----LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~--~~a~~~dr 214 (230)
T d1l2ta_ 142 KPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGER 214 (230)
T ss_dssp CGGG-----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH--HHHTTSSE
T ss_pred CHHH-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH--HHHHHCCE
T ss_conf 8023-----8999999999875652278889946876546989999999999999984399999987888--99986998
Q ss_pred EEEECCCEEEEECCH
Q ss_conf 999749818996395
Q 000615 414 IILLSEGQIVYQGPR 428 (1389)
Q Consensus 414 IilLs~G~ivy~Gp~ 428 (1389)
|++|.+|++++.|+.
T Consensus 215 v~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 215 IIYLKDGEVEREEKL 229 (230)
T ss_dssp EEEEETTEEEEEEEC
T ss_pred EEEEECCEEEEECCC
T ss_conf 999989999995257
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=311.74 Aligned_cols=229 Identities=23% Similarity=0.368 Sum_probs=182.9
Q ss_pred CCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEECCEEEEEECCCCCCHH
Q ss_conf 98961799930299999733887678705999999999852103457876651675501778838839999859999679
Q 000615 132 EIPKIEVRYDHLSVEGDVHVGTRALPTLLNVALNMLESALGLLHLVPSKKRSVRILKDVSGIVKPSRMTLLLGPPGAGKT 211 (1389)
Q Consensus 132 ~~p~i~v~~~~l~v~~~~~~~~~~~pt~~n~~~~~~~~~~~~~~~~~~~~~~~~IL~~VSg~i~pG~ltaIlGpsGSGKS 211 (1389)
+-++-+++|+|+++. + . ....++|+|||+.+++|+.++|+||||||||
T Consensus 8 ~~~~g~I~~~nvsf~---Y----------------------------~-~~~~~~L~~isl~i~~Ge~iaivG~sGsGKS 55 (253)
T d3b60a1 8 DRATGDLEFRNVTFT---Y----------------------------P-GREVPALRNINLKIPAGKTVALVGRSGSGKS 55 (253)
T ss_dssp SCCCCCEEEEEEEEC---S----------------------------S-SSSCCSEEEEEEEECTTCEEEEEECTTSSHH
T ss_pred CCCCEEEEEEEEEEE---E----------------------------C-CCCCCEEECEEEEECCCCEEEEECCCCCHHH
T ss_conf 778307999988999---2----------------------------9-9997635332899859999999999998599
Q ss_pred HHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q ss_conf 99999943939999840199997960799876---732899547998899999999999720104776125677885599
Q 000615 212 TLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEMTVRETLDFSGRCLGVGTRYELLAELSRR 288 (1389)
Q Consensus 212 TLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ 288 (1389)
||+++|+|.+.+. +|+|.+||.+..+... ++.++||+|++.++. .|+++|+.|+.....
T Consensus 56 TLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~n~~~~~~~~~-------------- 117 (253)
T d3b60a1 56 TIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEEY-------------- 117 (253)
T ss_dssp HHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSCC--------------
T ss_pred HHHHHHHCCCCCC---CCEEEECCCCCCHHHHHHHHHEEEEEEECCCCCC-CCHHHHHHHCCCCCC--------------
T ss_conf 9999986216888---4689878801211106654206879950254478-620243320572208--------------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 88619999911899999998511110346999999809964345433574566788567668999999862996839846
Q 000615 289 EKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDE 368 (1389)
Q Consensus 289 ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDE 368 (1389)
+.++..+++...+. .+. +-.|++..||.+|+. ...|||||||||+|||||+.+|++++|||
T Consensus 118 ----------~~~~i~~a~~~~~l-----~~~---i~~l~~gl~t~~~~~-~~~LSGGqkQRvaiARal~~~p~ililDE 178 (253)
T d3b60a1 118 ----------SREQIEEAARMAYA-----MDF---INKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILILDE 178 (253)
T ss_dssp ----------CHHHHHHHHHTTTC-----HHH---HHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEET
T ss_pred ----------CHHHHHHHHHHHHH-----HHH---HHHCCCCCHHHHCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf ----------99999999999817-----999---973554410143488-89849999999999999954998899516
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 98899968799999999999882897599998149213885238699974981899639567999
Q 000615 369 ISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 369 pTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~ivy~Gp~~~~~~ 433 (1389)
|||+||+.++..|.+.|+++.+ ++|+|+..|.. ++...+|+|++|.+|+|+++|+++++++
T Consensus 179 pts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 179 ATSALDTESERAIQAALDELQK--NRTSLVIAHRL--STIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG--GGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 4445898899999999987522--78899998879--9998599999998999999889999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=318.33 Aligned_cols=209 Identities=23% Similarity=0.341 Sum_probs=171.2
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCCC
Q ss_conf 167550177883883999985999967999999943939999840199997960799876---73289954799889999
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~~l 260 (1389)
.++|+|||+.++||++++|+||||||||||+++|+|.+++. +|+|.+||.++++... ++.++||+|++.+++.
T Consensus 15 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~- 90 (242)
T d1mv5a_ 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG- 90 (242)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCE-
T ss_pred CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CCEEEECCEEECCCCHHHHHHHEEEECCCCCCCCC-
T ss_conf 84142258998599999999999997999999999960989---87798899884424678887436797566545785-
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999997201047761256778855998861999991189999999851111034699999980996434543357456
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~ 340 (1389)
||+||+.++...... .+...++...++.. -....+++..||.+|+. .
T Consensus 91 ti~eNi~~~~~~~~~------------------------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~i~~~-g 137 (242)
T d1mv5a_ 91 TIRENLTYGLEGDYT------------------------DEDLWQVLDLAFAR--------SFVENMPDQLNTEVGER-G 137 (242)
T ss_dssp EHHHHTTSCTTSCSC------------------------HHHHHHHHHHHTCT--------TTTTSSTTGGGCEESTT-S
T ss_pred CHHHHEECCCCCCCC------------------------HHHHHHHHHHHHHH--------HHHCCCCCCCCCCCCCC-C
T ss_conf 345430124455542------------------------35677899999755--------54203742101523687-8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCC
Q ss_conf 67885676689999998629968398469889996879999999999988289759999814921388523869997498
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G 420 (1389)
..|||||||||+|||||+.+|++++||||||+||+.++.+|++.|+++.+ ++|+|+..|.+ +....+|+|++|.+|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l--~~~~~~D~i~vl~~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL--STIVDADKIYFIEKG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH--HHHHHCSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHHCCEEEEEECC
T ss_conf 98799999999999998529989996588655698899999887888717--99899997879--999849999999899
Q ss_pred EEEEECCHHHHHH
Q ss_conf 1899639567999
Q 000615 421 QIVYQGPRDNVLE 433 (1389)
Q Consensus 421 ~ivy~Gp~~~~~~ 433 (1389)
+++++|+++++++
T Consensus 214 ~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 214 QITGSGKHNELVA 226 (242)
T ss_dssp EECCCSCHHHHHH
T ss_pred EEEEECCHHHHHH
T ss_conf 9999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=312.78 Aligned_cols=204 Identities=25% Similarity=0.284 Sum_probs=101.8
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HH-HHHEEEEECCCCCCCCCC
Q ss_conf 15510203588478199996468994678996452998896379999995903882---31-202166842489789999
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ET-FARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 880 ~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~---~~-~~~~~gyv~Q~d~~~~~l 955 (1389)
.++|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+... .. .++.++|++|+...++.+
T Consensus 17 ~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p--~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~l 94 (254)
T d1g6ha_ 17 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA--DEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEM 94 (254)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGS
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 6887121799889979999999998499999999779768--87379999996640569999983387257764247887
Q ss_pred CHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999998887305----------99983999999999999982995543333469988788998999999999996399
Q 000615 956 TVYESLLYSAWLRL----------SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1389)
Q Consensus 956 Tv~E~l~f~a~lr~----------~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p 1025 (1389)
||.|++.+.+..+. ......++..+.++++++.+++.+..+..++ .||||||||+.||++|+.+|
T Consensus 95 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P 169 (254)
T d1g6ha_ 95 TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNP 169 (254)
T ss_dssp BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHHHHHHHHHTCC
T ss_pred EEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHCCCCHH-----HCCCHHHHHHHHHHHHHHCC
T ss_conf 4232143013330345045665421353289999999999876196302059535-----69918888999999997592
Q ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 9720307999999999999999999988499879999568519999862718899169599993589
Q 000615 1026 SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1026 ~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
++|+|||||+|||+.++..+++.+++++++|.|||+++|+.+ ++.+.+|++++|. +|+++..|++
T Consensus 170 ~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~~~Drv~vm~-~G~iv~~g~~ 234 (254)
T d1g6ha_ 170 KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF-NGQIIAEGRG 234 (254)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE-TTEEEEEEES
T ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 723243976569999999999999999978998999947699-9998699999996-9989999668
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-45 Score=311.71 Aligned_cols=210 Identities=24% Similarity=0.375 Sum_probs=148.1
Q ss_pred EEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC-CCEEEEECCCCCCCCCCCHHHHHH
Q ss_conf 0177883883999985999967999999943939999840199997960799876-732899547998899999999999
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP-QRTCAYISQHDLHHGEMTVRETLD 267 (1389)
Q Consensus 189 ~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~-~r~~aYV~Q~D~h~~~lTVrEtL~ 267 (1389)
|||+.++ +++++|+||||||||||+++|+|.++++ +|+|.+||.++....+ +|.++||+|++.++|.+||+||+.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~ 92 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIA 92 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHH
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCC---CEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHH
T ss_conf 9999749-9799999799980999999997399989---62899999998869989928522523144352201557666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 72010477612567788559988619999911899999998511110346999999809964345433574566788567
Q 000615 268 FSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGISGGQ 347 (1389)
Q Consensus 268 Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rGLSGGQ 347 (1389)
|+.+.. .+.++ +..++.+++.+||++..|..+.. |||||
T Consensus 93 ~~l~~~------------~~~~~------------------------~~~v~~~l~~~gl~~~~~~~~~~-----LSGG~ 131 (240)
T d2onka1 93 YGLRNV------------ERVER------------------------DRRVREMAEKLGIAHLLDRKPAR-----LSGGE 131 (240)
T ss_dssp TTCTTS------------CHHHH------------------------HHHHHHHHHTTTCTTTTTCCGGG-----SCHHH
T ss_pred HHHCCC------------CHHHH------------------------HHHHHHHHHHCCCHHHHHCCHHH-----CCHHH
T ss_conf 532336------------77889------------------------99999999863837566579444-----89999
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEEEEECC
Q ss_conf 66899999986299683984698899968799999999999882897599998149213885238699974981899639
Q 000615 348 KKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIVYQGP 427 (1389)
Q Consensus 348 KkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~ivy~Gp 427 (1389)
||||+||+||+.+|++++|||||+|||+.++.++++.++++.+..+.|++++.|.. .++..++|+|++|.+|+++.+|+
T Consensus 132 kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp HHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEEEC
T ss_conf 89999987775167706752865558879999999999999874397699981899-99999699999998999999906
Q ss_pred HHHHHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf 56799999864987999999677997
Q 000615 428 RDNVLEFFEHMGFKCPERKGVADFLQ 453 (1389)
Q Consensus 428 ~~~~~~~F~~lGf~cp~~~~~adfl~ 453 (1389)
.+++.. ++...++.|+.
T Consensus 211 ~~el~~---------~~~~~v~~fl~ 227 (240)
T d2onka1 211 LKELFS---------AKNGEVAEFLS 227 (240)
T ss_dssp HHHHHH---------SCCSSHHHHGG
T ss_pred HHHHHC---------CCCHHHHHHHC
T ss_conf 999832---------99889999857
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.8e-45 Score=309.68 Aligned_cols=214 Identities=21% Similarity=0.267 Sum_probs=162.3
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++..+ +..++|+|||+.+++||++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 3 Lev~nl~k~y-------------g~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p--~~G~I~~~G~~i~ 67 (258)
T d1b0ua_ 3 LHVIDLHKRY-------------GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP--SEGAIIVNGQNIN 67 (258)
T ss_dssp EEEEEEEEEE-------------TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEECC
T ss_pred EEEEEEEEEE-------------CCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCEEECCEEEC
T ss_conf 9999789998-------------999988150668869979999989998299999999747667--8997799999933
Q ss_pred H----------------HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 2----------------31202166842489789999999999988873059998399999999999998299554-333
Q 000615 935 Q----------------ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-NDS 997 (1389)
Q Consensus 935 ~----------------~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-~~~ 997 (1389)
. ...++.+|||+|++.++|.+||.|++.+..... ...+..+..+.+.++++.++|.+. .+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 145 (258)
T d1b0ua_ 68 LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVGIDERAQGK 145 (258)
T ss_dssp EEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred CCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCCCCHHHHCC
T ss_conf 67752000023517679997454489983323141101021365657876--2999899999999999982995244306
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEE
Q ss_conf 34699887889989999999999963999720307999999999999999999988499879999568519999862718
Q 000615 998 MVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1389)
Q Consensus 998 ~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~i 1077 (1389)
.. ..||||||||++||++|+.+|++|+|||||+|||+.++..|++.+++++++|.|||+++|++. ++...+|++
T Consensus 146 ~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~-~~~~~adri 219 (258)
T d1b0ua_ 146 YP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 219 (258)
T ss_dssp CG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred CC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHH-HHHHHCCEE
T ss_conf 82-----205677888989999984399878852455568878888998765541036883389948999-999869999
Q ss_pred EEEECCCEEEEECCC
Q ss_conf 899169599993589
Q 000615 1078 LLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1078 lll~~gG~~~~~G~~ 1092 (1389)
++|. +|++++.|++
T Consensus 220 ~vm~-~G~iv~~g~~ 233 (258)
T d1b0ua_ 220 IFLH-QGKIEEEGDP 233 (258)
T ss_dssp EEEE-TTEEEEEECH
T ss_pred EEEE-CCEEEEECCH
T ss_conf 9997-9999998499
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.8e-45 Score=309.54 Aligned_cols=214 Identities=22% Similarity=0.355 Sum_probs=147.3
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 67883340135335221124656565155102035884781999964689946789964529988963799999959038
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~ 933 (1389)
.++.+|++.++ +...+|+|||+.+++||++||+||||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 6 ~Lev~~l~k~y-------------g~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p--~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYY-------------GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA--QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE-------------TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEC
T ss_pred EEEEEEEEEEE-------------CCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 79996189998-------------998888302578889979999999998599999999678888--803898424434
Q ss_pred CH---HHHHH-EEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 82---31202-1668424897899999999999888730599983999999999999982-9955433334699887889
Q 000615 934 NQ---ETFAR-VSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELV-ELKSLNDSMVGLPGVSGLS 1008 (1389)
Q Consensus 934 ~~---~~~~~-~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l-~L~~~~~~~vg~~~~~~LS 1008 (1389)
.. ...++ .++|++|+..+++.+||+|++.+.+..+... +..++.++++++.+ ++.+..+..++ .||
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~-----~LS 141 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKERLKQLGG-----TLS 141 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTTTTSBSS-----SSC
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHCHHHHHHCCHH-----HCC
T ss_conf 466088888742355676554577636999999888732788----89999999999874176888758543-----389
Q ss_pred HHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEE
Q ss_conf 98999999999996399972030799999999999999999998849987999956851999986271889916959999
Q 000615 1009 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIY 1088 (1389)
Q Consensus 1009 gGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~ 1088 (1389)
||||||++||++|+.+|++|+|||||+|||+.++..+++.+++++++|.||++++|+.+ ++.+.+|++++|. +|++++
T Consensus 142 GG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~-~~~~~~drv~vl~-~G~iv~ 219 (240)
T d1ji0a_ 142 GGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLE-TGQIVL 219 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEE
T ss_conf 99999999999998299874003988679999999999999999968998999958899-9999699999998-999999
Q ss_pred ECCCC
Q ss_conf 35898
Q 000615 1089 AGPLG 1093 (1389)
Q Consensus 1089 ~G~~~ 1093 (1389)
.|++.
T Consensus 220 ~g~~~ 224 (240)
T d1ji0a_ 220 EGKAS 224 (240)
T ss_dssp EEEHH
T ss_pred ECCHH
T ss_conf 84899
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-44 Score=305.29 Aligned_cols=208 Identities=25% Similarity=0.305 Sum_probs=181.6
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC--CCCEEEEECCCCCCCCCC
Q ss_conf 516755017788388399998599996799999994393999984019999796079987--673289954799889999
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV--PQRTCAYISQHDLHHGEM 260 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~--~~r~~aYV~Q~D~h~~~l 260 (1389)
.+++|+|||+.+++|++++|+||+|||||||+++|+|.+.++ +|+|.++|.+..+.. .++.++||+|++..++.+
T Consensus 14 ~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~---~G~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~l 90 (238)
T d1vpla_ 14 KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 90 (238)
T ss_dssp TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCCHHHHHHHEEEEEECCCCCCCC
T ss_conf 999980625688489799999999999999999996698878---88799986724468398872186750015468786
Q ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99999997201047761256778855998861999991189999999851111034699999980996434543357456
Q 000615 261 TVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMR 340 (1389)
Q Consensus 261 TVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~ 340 (1389)
||+|++.|.+.+.+.. +.+ . ....+.+++.++|.+-.|..+++
T Consensus 91 tv~e~l~~~~~~~~~~----------~~~----------~--------------~~~~~~~l~~~~l~~~~~~~~~~--- 133 (238)
T d1vpla_ 91 QGIEYLRFVAGFYASS----------SSE----------I--------------EEMVERATEIAGLGEKIKDRVST--- 133 (238)
T ss_dssp BHHHHHHHHHHHHCCC----------HHH----------H--------------HHHHHHHHHHHCCGGGGGSBGGG---
T ss_pred CHHHHHHHHHHHCCCC----------HHH----------H--------------HHHHHHHHHHCCCHHHHHHHHHH---
T ss_conf 6778889899861799----------899----------9--------------99999999867978888504533---
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCC
Q ss_conf 67885676689999998629968398469889996879999999999988289759999814921388523869997498
Q 000615 341 RGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEG 420 (1389)
Q Consensus 341 rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G 420 (1389)
+|||||||++||++|+.+|++++|||||+|||+.++.+|++.+++++.. +.|++++.|.. .++..++|+|++|.+|
T Consensus 134 --lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~-g~tii~~tH~l-~~~~~~~drv~vl~~G 209 (238)
T d1vpla_ 134 --YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE-GLTILVSSHNM-LEVEFLCDRIALIHNG 209 (238)
T ss_dssp --CCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-TCEEEEEECCH-HHHTTTCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCH-HHHHHHCCEEEEEECC
T ss_conf --7998989999999986599988733798897989999999999999965-99899995989-9999969999999899
Q ss_pred EEEEECCHHHHHHH
Q ss_conf 18996395679999
Q 000615 421 QIVYQGPRDNVLEF 434 (1389)
Q Consensus 421 ~ivy~Gp~~~~~~~ 434 (1389)
++++.|+++++.+.
T Consensus 210 ~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 210 TIVETGTVEELKER 223 (238)
T ss_dssp EEEEEEEHHHHHHH
T ss_pred EEEEECCHHHHHHC
T ss_conf 99999289999865
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.5e-44 Score=304.87 Aligned_cols=206 Identities=23% Similarity=0.347 Sum_probs=173.8
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC----CCEEEEECCCCCCCC
Q ss_conf 5167550177883883999985999967999999943939999840199997960799876----732899547998899
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP----QRTCAYISQHDLHHG 258 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~----~r~~aYV~Q~D~h~~ 258 (1389)
..++|+|||+.+++||+++|+||||||||||+++|+|.++++ +|+|.++|.++....+ +..++|++|+..+++
T Consensus 18 ~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~ 94 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94 (240)
T ss_dssp TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCT
T ss_pred CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCC
T ss_conf 988883025788899799999999985999999996788888---03898424434466088888742355676554577
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCCCCCCCCCC
Q ss_conf 9999999997201047761256778855998861999991189999999851111034699999980-996434543357
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKIL-GLDICADTMVGD 337 (1389)
Q Consensus 259 ~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~l-gL~~~~dT~VG~ 337 (1389)
.+||+||+.+.+........ . ....+.++..+ +|++.+|..+++
T Consensus 95 ~ltv~en~~~~~~~~~~~~~---------------------~--------------~~~~~~~~~~~~~l~~~~~~~~~~ 139 (240)
T d1ji0a_ 95 ELTVYENLMMGAYNRKDKEG---------------------I--------------KRDLEWIFSLFPRLKERLKQLGGT 139 (240)
T ss_dssp TSBHHHHHHGGGTTCCCSSH---------------------H--------------HHHHHHHHHHCHHHHTTTTSBSSS
T ss_pred CCCHHHHHHHHHHHCCCHHH---------------------H--------------HHHHHHHHHHHHCHHHHHHCCHHH
T ss_conf 63699999988873278889---------------------9--------------999999998741768887585433
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEE
Q ss_conf 45667885676689999998629968398469889996879999999999988289759999814921388523869997
Q 000615 338 EMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL 417 (1389)
Q Consensus 338 ~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilL 417 (1389)
|||||||||+||++|+.+|++|+|||||+|||+.++.++++.++++++. +.|++++.| ...++.+++|+|++|
T Consensus 140 -----LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~-g~til~~tH-~l~~~~~~~drv~vl 212 (240)
T d1ji0a_ 140 -----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQE-GTTILLVEQ-NALGALKVAHYGYVL 212 (240)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHT-TCCEEEEES-CHHHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEEC-CHHHHHHHCCEEEEE
T ss_conf -----8999999999999998299874003988679999999999999999968-998999958-899999969999999
Q ss_pred CCCEEEEECCHHHHHH
Q ss_conf 4981899639567999
Q 000615 418 SEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 418 s~G~ivy~Gp~~~~~~ 433 (1389)
.+|++++.|+++++.+
T Consensus 213 ~~G~iv~~g~~~el~~ 228 (240)
T d1ji0a_ 213 ETGQIVLEGKASELLD 228 (240)
T ss_dssp ETTEEEEEEEHHHHHT
T ss_pred ECCEEEEECCHHHHHC
T ss_conf 8999999848999842
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-44 Score=305.06 Aligned_cols=220 Identities=25% Similarity=0.355 Sum_probs=181.0
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC----CEEEEECCCCCCCC
Q ss_conf 51675501778838839999859999679999999439399998401999979607998767----32899547998899
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ----RTCAYISQHDLHHG 258 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~----r~~aYV~Q~D~h~~ 258 (1389)
..++|+|||+.+++||+++|+||+|||||||+++|+|.++++ +|+|.++|.++....++ +.++|++|+...++
T Consensus 16 ~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~ 92 (254)
T d1g6ha_ 16 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK 92 (254)
T ss_dssp TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG
T ss_pred CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCEEEECCEECCCHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 968871217998899799999999984999999997797688---73799999966405699999833872577642478
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999972010477612567788559988619999911899999998511110346999999809964345433574
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~ 338 (1389)
.+||+||+.+++..++........ .......+.+ .....+.+++.+++++.+|..+++
T Consensus 93 ~ltv~enl~~~~~~~~~~~~~~~~-------~~~~~~~~~~--------------~~~~~~~~l~~~~l~~~~~~~~~~- 150 (254)
T d1g6ha_ 93 EMTVLENLLIGEICPGESPLNSLF-------YKKWIPKEEE--------------MVEKAFKILEFLKLSHLYDRKAGE- 150 (254)
T ss_dssp GSBHHHHHHGGGTSTTSCHHHHHH-------HCSSCCCCHH--------------HHHHHHHHHHHTTCGGGTTSBGGG-
T ss_pred CCEEEEEEEEHHHHCCCCCHHHHH-------HHCCCCCHHH--------------HHHHHHHHHHHCCCCHHCCCCHHH-
T ss_conf 874232143013330345045665-------4213532899--------------999999998761963020595356-
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEEC
Q ss_conf 56678856766899999986299683984698899968799999999999882897599998149213885238699974
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs 418 (1389)
|||||||||.||++|+.+|++++|||||+|||+.++.+|.+.+++++. .+.|+++..| ...++.+++|+|++|.
T Consensus 151 ----LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsH-dl~~~~~~~Drv~vm~ 224 (254)
T d1g6ha_ 151 ----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEH-RLDIVLNYIDHLYVMF 224 (254)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECS-CCSTTGGGCSEEEEEE
T ss_pred ----CCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEEC-CHHHHHHHCCEEEEEE
T ss_conf ----991888899999999759272324397656999999999999999997-8998999947-6999998699999996
Q ss_pred CCEEEEECCHHHHHH
Q ss_conf 981899639567999
Q 000615 419 EGQIVYQGPRDNVLE 433 (1389)
Q Consensus 419 ~G~ivy~Gp~~~~~~ 433 (1389)
+|+++..|+.+++.+
T Consensus 225 ~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 225 NGQIIAEGRGEEEIK 239 (254)
T ss_dssp TTEEEEEEESHHHHH
T ss_pred CCEEEEEECHHHHHH
T ss_conf 998999966899865
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.5e-44 Score=303.49 Aligned_cols=193 Identities=25% Similarity=0.412 Sum_probs=171.0
Q ss_pred CCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH-HHHHHEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf 203588478199996468994678996452998896379999995903882-3120216684248978999999999998
Q 000615 885 SVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ-ETFARVSGYCEQNDIHSPYVTVYESLLY 963 (1389)
Q Consensus 885 ~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~-~~~~~~~gyv~Q~d~~~~~lTv~E~l~f 963 (1389)
|||+.+. +++++|+||||||||||+++|+|...+ .+|+|.++|.+..+ ...+|.+|||+|++.++|.+||+|++.|
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p--~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP--DRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC--SEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCC--CCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHH
T ss_conf 9999749-979999979998099999999739998--9628999999988699899285225231443522015576665
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHH
Q ss_conf 88730599983999999999999982995543333469988788998999999999996399972030799999999999
Q 000615 964 SAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAA 1043 (1389)
Q Consensus 964 ~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~ 1043 (1389)
.. + ..+..+++++++++++.++|.+..+..+. .||||||||++||++|+.+|++|+|||||+|||+.++.
T Consensus 94 ~l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~ 163 (240)
T d2onka1 94 GL--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKG 163 (240)
T ss_dssp TC--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHH
T ss_pred HH--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHH
T ss_conf 32--3---36778899999999986383756657944-----48999989999987775167706752865558879999
Q ss_pred HHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 999999998849-9879999568519999862718899169599993589
Q 000615 1044 IVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1044 ~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
.+++.++++.++ |.|||+++|++. ++...+|++++|. .|+++..|++
T Consensus 164 ~i~~~i~~l~~~~g~tvi~vtHd~~-~~~~~adri~vm~-~G~ii~~G~~ 211 (240)
T d2onka1 164 VLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVML-NGRIVEKGKL 211 (240)
T ss_dssp HHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEE-TTEEEEEECH
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEEECH
T ss_conf 9999999998743976999818999-9999699999998-9999999069
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.3e-43 Score=298.78 Aligned_cols=206 Identities=23% Similarity=0.304 Sum_probs=172.0
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCC----------------CCCEE
Q ss_conf 16755017788388399998599996799999994393999984019999796079987----------------67328
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFV----------------PQRTC 247 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~----------------~~r~~ 247 (1389)
.++|+|||+.+++||+++|+||||||||||+++|+|..+++ +|+|.+||.++.... .++.+
T Consensus 15 ~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~i 91 (258)
T d1b0ua_ 15 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 91 (258)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCEEECCEEECCCCCCCHHCCCCCHHHHHHHHCCE
T ss_conf 99881506688699799999899982999999997476678---997799999933677520000235176799974544
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Q ss_conf 995479988999999999997201-0477612567788559988619999911899999998511110346999999809
Q 000615 248 AYISQHDLHHGEMTVRETLDFSGR-CLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILG 326 (1389)
Q Consensus 248 aYV~Q~D~h~~~lTVrEtL~Faa~-~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lg 326 (1389)
+||.|+..+++.+||.|++.|+.. ..+. ++.+. ...+..+++.+|
T Consensus 92 g~vfQ~~~l~~~~tv~env~~~~~~~~~~----------~~~~~------------------------~~~~~~~l~~~~ 137 (258)
T d1b0ua_ 92 TMVFQHFNLWSHMTVLENVMEAPIQVLGL----------SKHDA------------------------RERALKYLAKVG 137 (258)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCC----------CHHHH------------------------HHHHHHHHHHTT
T ss_pred EEEEECHHHCCCHHCCHHHHHHHHHHCCC----------CHHHH------------------------HHHHHHHHHHCC
T ss_conf 89983323141101021365657876299----------98999------------------------999999999829
Q ss_pred CCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf 9643-454335745667885676689999998629968398469889996879999999999988289759999814921
Q 000615 327 LDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAP 405 (1389)
Q Consensus 327 L~~~-~dT~VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~ 405 (1389)
|.+- .|..++. |||||||||+||++|+.+|+++++||||+|||+.++.+|.+.|+++.+. +.|+++.. |-..
T Consensus 138 l~~~~~~~~p~~-----LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~-g~til~vt-Hdl~ 210 (258)
T d1b0ua_ 138 IDERAQGKYPVH-----LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVT-HEMG 210 (258)
T ss_dssp CCHHHHTSCGGG-----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT-TCCEEEEC-SCHH
T ss_pred CCHHHHCCCCCC-----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCC-CCCEEEEE-CCHH
T ss_conf 952443068220-----5677888989999984399878852455568878888998765541036-88338994-8999
Q ss_pred HHHHHCCEEEEECCCEEEEECCHHHHHH
Q ss_conf 3885238699974981899639567999
Q 000615 406 ETYDLFDDIILLSEGQIVYQGPRDNVLE 433 (1389)
Q Consensus 406 e~~~lfD~IilLs~G~ivy~Gp~~~~~~ 433 (1389)
++..++|+|++|.+|+++++|+++++..
T Consensus 211 ~~~~~adri~vm~~G~iv~~g~~~ev~~ 238 (258)
T d1b0ua_ 211 FARHVSSHVIFLHQGKIEEEGDPEQVFG 238 (258)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHCCEEEEEECCEEEEECCHHHHHH
T ss_conf 9998699999997999999849999983
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-44 Score=304.39 Aligned_cols=211 Identities=26% Similarity=0.438 Sum_probs=170.9
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 67883340135335221124656565155102035884781999964689946789964529988963799999959038
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~ 933 (1389)
.++|+|++|.++ .+...+|+|||+.+++|+.+||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 1 eI~~~nvsf~Y~-----------~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 67 (241)
T d2pmka1 1 DITFRNIRFRYK-----------PDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP--ENGQVLIDGHDL 67 (241)
T ss_dssp EEEEEEEEEESS-----------TTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEET
T ss_pred CEEEEEEEEEEC-----------CCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCEEEECCEEE
T ss_conf 929999999908-----------9996037424899849999999999999899999999735788--888999999994
Q ss_pred C---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC-------CCCCCCCCCCCC
Q ss_conf 8---231202166842489789999999999988873059998399999999999998299-------554333346998
Q 000615 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL-------KSLNDSMVGLPG 1003 (1389)
Q Consensus 934 ~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L-------~~~~~~~vg~~~ 1003 (1389)
. ...+++.++||+|++.++ ..|++|++.+.. .+.+.++ ++++++..++ ..-.++.++..+
T Consensus 68 ~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~~~-----~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~t~i~~~g 137 (241)
T d2pmka1 68 ALADPNWLRRQVGVVLQDNVLL-NRSIIDNISLAN-----PGMSVEK----VIYAAKLAGAHDFISELREGYNTIVGEQG 137 (241)
T ss_dssp TTSCHHHHHHHEEEECSSCCCT-TSBHHHHHCTTS-----TTCCHHH----HHHHHHHHTCHHHHTTSTTGGGSBCSTTT
T ss_pred CCCCHHHHHCEEEEEECCCCCC-CCCCCCCCCCCC-----CCCCHHH----HHHHHHHHHHHHHHHHHHCCHHHHCCCCC
T ss_conf 4002465535288982446557-840003522357-----5543888----99999997557888763201344327878
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 87889989999999999963999720307999999999999999999988499879999568519999862718899169
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~g 1083 (1389)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. +++|+|+++|+++ ....+|++++|. +
T Consensus 138 -~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~ 212 (241)
T d2pmka1 138 -AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVME-K 212 (241)
T ss_dssp -TCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGG--GGTTSSEEEEEE-T
T ss_pred -CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf -8669889898754434441651355647765559899999999999985-8998999978899--998499999998-9
Q ss_pred CEEEEECCC
Q ss_conf 599993589
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~G~~ 1092 (1389)
|+++..|++
T Consensus 213 G~Iv~~G~~ 221 (241)
T d2pmka1 213 GKIVEQGKH 221 (241)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-43 Score=298.66 Aligned_cols=217 Identities=23% Similarity=0.330 Sum_probs=171.6
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 67883340135335221124656565155102035884781999964689946789964529988963799999959038
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~ 933 (1389)
.++|+|+++.++.. ....+|+|||+.+++|+++||+|+||||||||+++|+|...+ .+|.|.++|.+.
T Consensus 11 ~I~~~nvsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p--~~G~I~i~g~~i 78 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNR----------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP--TGGQLLLDGKPL 78 (251)
T ss_dssp CEEEEEEEECCTTS----------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC--SEEEEEETTEEG
T ss_pred EEEEEEEEEECCCC----------CCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCEEC
T ss_conf 69999989988999----------999767443899849989999999998499999998614378--768998899853
Q ss_pred C---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 8---231202166842489789999999999988873059998399999-----99999999829955433334699887
Q 000615 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRK-----MFVDEVMELVELKSLNDSMVGLPGVS 1005 (1389)
Q Consensus 934 ~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~-----~~v~~vl~~l~L~~~~~~~vg~~~~~ 1005 (1389)
. ...+++.++||+|++.+++ .||+|++.|... ......... ....+.++ .|.+-.++.++.. ..
T Consensus 79 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~----~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 79 PQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLT----QKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCS----SCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHH--HCCCCCHHHHHCC-CC
T ss_conf 11013788877654045650027-634655454210----1302788999999998999998--5612111367516-76
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 88998999999999996399972030799999999999999999998849-98799995685199998627188991695
Q 000615 1006 GLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT-GRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1006 ~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~-g~tvi~t~Hqps~~~~~~fD~illl~~gG 1084 (1389)
.||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++.+. |+|+|+++|+++ ..+.+|++++|. +|
T Consensus 151 ~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~--~~~~aDrI~vl~-~G 227 (251)
T d1jj7a_ 151 QLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHILFLE-GG 227 (251)
T ss_dssp SSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH--HHHTCSEEEEEE-TT
T ss_pred CCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 689547048998604456870787167576568536899999999976506989999959799--998599999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999935898
Q 000615 1085 RVIYAGPLG 1093 (1389)
Q Consensus 1085 ~~~~~G~~~ 1093 (1389)
+++..|++.
T Consensus 228 ~iv~~Gt~~ 236 (251)
T d1jj7a_ 228 AIREGGTHQ 236 (251)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
T ss_conf 999988999
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.1e-43 Score=295.49 Aligned_cols=213 Identities=25% Similarity=0.384 Sum_probs=173.8
Q ss_pred CEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCC
Q ss_conf 26788334013533522112465656515510203588478199996468994678996452998896379999995903
Q 000615 853 LSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYP 932 (1389)
Q Consensus 853 ~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~ 932 (1389)
..++|+|++|.++. +...+|+|||+.+++|+++||+|+||||||||+++|+|...+ .+|.|.++|.+
T Consensus 15 g~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~ 81 (255)
T d2hyda1 15 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV--TSGQILIDGHN 81 (255)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC--SEEEEEETTEE
T ss_pred CEEEEEEEEEEECC-----------CCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCCEE
T ss_conf 87999988999599-----------997606443899839989999889998099999999712786--30001539987
Q ss_pred CC---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCC
Q ss_conf 88---231202166842489789999999999988873059998399999999999998299554-------33334699
Q 000615 933 KN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLP 1002 (1389)
Q Consensus 933 ~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~ 1002 (1389)
.. ...+++.++||+|++.++ ..||+||+.|.. .+...+ .+.++++..++.+. .++.++..
T Consensus 82 i~~~~~~~lr~~i~~v~Q~~~lf-~~Ti~eNi~~g~-----~~~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~~ 151 (255)
T d2hyda1 82 IKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGR-----PTATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGER 151 (255)
T ss_dssp GGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGC-----SSCCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCGG
T ss_pred CCCCCHHHHHHEEEEEECCCCCC-CCCHHHHHHCCC-----CCCCHH----HHHHHHHHHCCHHHHHHCCCCCCCHHCCC
T ss_conf 53078888634145651015689-987999985158-----679999----99999999697999973624201033388
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEEC
Q ss_conf 88788998999999999996399972030799999999999999999998849987999956851999986271889916
Q 000615 1003 GVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKR 1082 (1389)
Q Consensus 1003 ~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~ 1082 (1389)
+ ..||||||||++|||+|+.+|+|++||||||+||+.++..|++.++++. .++|+|+++|+++ ....+|++++|.
T Consensus 152 g-~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~-~~~TvI~itH~~~--~~~~~D~ii~l~- 226 (255)
T d2hyda1 152 G-VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLS--TITHADKIVVIE- 226 (255)
T ss_dssp G-TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGG--GTTTCSEEEEEE-
T ss_pred C-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEEECCHH--HHHHCCEEEEEE-
T ss_conf 8-9849999999999999855998999837654479779999999999875-3888999968999--998599999998-
Q ss_pred CCEEEEECCCC
Q ss_conf 95999935898
Q 000615 1083 GGRVIYAGPLG 1093 (1389)
Q Consensus 1083 gG~~~~~G~~~ 1093 (1389)
+|+++..|++.
T Consensus 227 ~G~iv~~G~~~ 237 (255)
T d2hyda1 227 NGHIVETGTHR 237 (255)
T ss_dssp TTEEEEEECHH
T ss_pred CCEEEEECCHH
T ss_conf 99999988999
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=2.7e-44 Score=303.25 Aligned_cols=211 Identities=27% Similarity=0.439 Sum_probs=169.5
Q ss_pred EEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC
Q ss_conf 78833401353352211246565651551020358847819999646899467899645299889637999999590388
Q 000615 855 LTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN 934 (1389)
Q Consensus 855 l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~ 934 (1389)
++++|++|+++ +.+.+|+|||+.++||+++||+|+||||||||+++|+|...+ .+|+|.++|.+..
T Consensus 2 le~knvsf~Y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i~ 67 (242)
T d1mv5a_ 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP--TAGEITIDGQPID 67 (242)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC--SBSCEEETTEEST
T ss_pred EEEEEEEEECC------------CCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEECCEEEC
T ss_conf 79998899879------------998414225899859999999999999799999999996098--9877988998844
Q ss_pred H---HHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCCCCC
Q ss_conf 2---312021668424897899999999999888730599983999999999999982995-------543333469988
Q 000615 935 Q---ETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-------SLNDSMVGLPGV 1004 (1389)
Q Consensus 935 ~---~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~~~~ 1004 (1389)
. ..+++.+|||+|++.+++. |++|++.+... ...+... +++.++..++. +..++.++..+
T Consensus 68 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g- 137 (242)
T d1mv5a_ 68 NISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDED----LWQVLDLAFARSFVENMPDQLNTEVGERG- 137 (242)
T ss_dssp TTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTS-
T ss_pred CCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHH----HHHHHHHHHHHHHHCCCCCCCCCCCCCCC-
T ss_conf 24678887436797566545785-34543012445----5542356----77899999755542037421015236878-
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCC
Q ss_conf 78899899999999999639997203079999999999999999999884998799995685199998627188991695
Q 000615 1005 SGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGG 1084 (1389)
Q Consensus 1005 ~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG 1084 (1389)
..||||||||++|||+|+.+|+||+||||||+||+.++..|++.++++. +|+|||+++|+++ ....+|++++|. +|
T Consensus 138 ~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~i~vl~-~G 213 (242)
T d1mv5a_ 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIE-KG 213 (242)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEE-TT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-CC
T ss_conf 9879999999999999852998999658865569889999988788871-7998999978799--998499999998-99
Q ss_pred EEEEECCCC
Q ss_conf 999935898
Q 000615 1085 RVIYAGPLG 1093 (1389)
Q Consensus 1085 ~~~~~G~~~ 1093 (1389)
++++.|++.
T Consensus 214 ~iv~~G~~~ 222 (242)
T d1mv5a_ 214 QITGSGKHN 222 (242)
T ss_dssp EECCCSCHH
T ss_pred EEEEECCHH
T ss_conf 999999999
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-42 Score=291.93 Aligned_cols=212 Identities=23% Similarity=0.328 Sum_probs=171.4
Q ss_pred EEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 67883340135335221124656565155102035884781999964689946789964529988963799999959038
Q 000615 854 SLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPK 933 (1389)
Q Consensus 854 ~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~ 933 (1389)
.++|+|+++.++. +...+|+|||+.+++|+.+||+|+||||||||+++|+|...+ .+|+|.++|.+.
T Consensus 13 ~I~~~nvsf~Y~~-----------~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p--~~G~I~i~g~~i 79 (253)
T d3b60a1 13 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI--DEGHILMDGHDL 79 (253)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC--SEEEEEETTEET
T ss_pred EEEEEEEEEEECC-----------CCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCCCC
T ss_conf 7999988999299-----------997635332899859999999999998599999998621688--846898788012
Q ss_pred C---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCC
Q ss_conf 8---231202166842489789999999999988873059998399999999999998299554-------333346998
Q 000615 934 N---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPG 1003 (1389)
Q Consensus 934 ~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~ 1003 (1389)
. ...+++.++||+|++.++ ..|+++++.+.. +...+.+ .++++++..++.+. .++.++..
T Consensus 80 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~----~~~~~~~----~i~~a~~~~~l~~~i~~l~~gl~t~~~~~- 149 (253)
T d3b60a1 80 REYTLASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSRE----QIEEAARMAYAMDFINKMDNGLDTIIGEN- 149 (253)
T ss_dssp TTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTT----TSCCCHH----HHHHHHHTTTCHHHHHHSTTGGGSBCCTT-
T ss_pred CHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCC----CCCCCHH----HHHHHHHHHHHHHHHHHCCCCCHHHHCCC-
T ss_conf 1110665420687995025447-862024332057----2208999----99999999817999973554410143488-
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECC
Q ss_conf 87889989999999999963999720307999999999999999999988499879999568519999862718899169
Q 000615 1004 VSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRG 1083 (1389)
Q Consensus 1004 ~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~g 1083 (1389)
...||||||||++|||+|+.+|+||+||||||+||+.++..|++.|+++. +++|+|+++|+++ ....+|++++|. +
T Consensus 150 ~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~~D~v~vl~-~ 225 (253)
T d3b60a1 150 GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLS--TIEQADEIVVVE-D 225 (253)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGG--GTTTCSEEEEEE-T
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHH--HHHHCCEEEEEE-C
T ss_conf 89849999999999999954998899516444589889999999998752-2788999988799--998599999998-9
Q ss_pred CEEEEECCC
Q ss_conf 599993589
Q 000615 1084 GRVIYAGPL 1092 (1389)
Q Consensus 1084 G~~~~~G~~ 1092 (1389)
|+++..|++
T Consensus 226 G~Iv~~G~~ 234 (253)
T d3b60a1 226 GIIVERGTH 234 (253)
T ss_dssp TEEEEEECH
T ss_pred CEEEEECCH
T ss_conf 999998899
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.5e-42 Score=290.37 Aligned_cols=198 Identities=23% Similarity=0.307 Sum_probs=159.5
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHH
Q ss_conf 16755017788388399998599996799999994393999984019999796079987673289954799889999999
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVR 263 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~D~h~~~lTVr 263 (1389)
.++|+|||+.+++|++++|+||+|||||||+++|+|.+++. +|+|.++| .++||+|+..+++ .||+
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~-~tv~ 114 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS---EGIIKHSG----------RVSFCSQFSWIMP-GTIK 114 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEECCS----------CEEEECSSCCCCS-EEHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECC----------EEEEEECCCCCCC-CEEE
T ss_conf 76773759998599999999899982999999995797478---82899999----------9999816430267-6032
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 99997201047761256778855998861999991189999999851111034699999980996434543357456678
Q 000615 264 ETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGI 343 (1389)
Q Consensus 264 EtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rGL 343 (1389)
||+.|+.... ..+++ ...+. .+....+..+.+..||.+|. ....|
T Consensus 115 eni~~~~~~~--~~~~~---------------------~~~~~-----------~~~~~~i~~l~~~~~~~~~~-~~~~L 159 (281)
T d1r0wa_ 115 ENIIFGVSYD--EYRYK---------------------SVVKA-----------CQLQQDITKFAEQDNTVLGE-GGVTL 159 (281)
T ss_dssp HHHTTTSCCC--HHHHH---------------------HHHHH-----------TTCHHHHTTSTTGGGCEECT-TCTTS
T ss_pred CCCCCCCCCC--CHHHH---------------------HHHHH-----------HHHHHHHHHCHHHHHHHHHH-HCCCC
T ss_conf 1420333456--05799---------------------99999-----------77699998461233235555-42377
Q ss_pred CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEEE
Q ss_conf 85676689999998629968398469889996879999999999988289759999814921388523869997498189
Q 000615 344 SGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQIV 423 (1389)
Q Consensus 344 SGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~iv 423 (1389)
||||||||++||+|+.+|++++|||||+|||+.+..+|++.+..... .++|+|+..|.. +....+|+|++|.+|+++
T Consensus 160 SgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~--~~l~~aDrI~vl~~G~i~ 236 (281)
T d1r0wa_ 160 SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM--EHLRKADKILILHQGSSY 236 (281)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH--HHHHTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECHH--HHHHHCCEEEEEECCEEE
T ss_conf 99999999999999869635133385544898999999999998862-899999992528--999859999999899999
Q ss_pred EECCHHHHHH
Q ss_conf 9639567999
Q 000615 424 YQGPRDNVLE 433 (1389)
Q Consensus 424 y~Gp~~~~~~ 433 (1389)
++|+++++..
T Consensus 237 ~~Gt~~eL~~ 246 (281)
T d1r0wa_ 237 FYGTFSELQS 246 (281)
T ss_dssp EEECHHHHHH
T ss_pred EECCHHHHHC
T ss_conf 9878999960
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-40 Score=278.85 Aligned_cols=194 Identities=24% Similarity=0.381 Sum_probs=159.4
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCH---HHHHHEEEEECCCCCCCCCCCHH
Q ss_conf 510203588478199996468994678996452998896379999995903882---31202166842489789999999
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQ---ETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 882 iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTv~ 958 (1389)
.|++||+.+++||++||+||||||||||+++|+|... .+|+|.++|.+... ...+...+|++|+.......++.
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~---~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 90 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVW 90 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSCC---CSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC---CCEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHH
T ss_conf 5558888994898999998999809999999948879---9559999999998699899986402451213577442098
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-------CCCCCEEE
Q ss_conf 99998887305999839999999999999829955433334699887889989999999999963-------99972030
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVA-------NPSIIFMD 1031 (1389)
Q Consensus 959 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~-------~p~illLD 1031 (1389)
+.+.+... . +.+.+.++++++.+++.+..+..+. .||||||||++||++|+. +|++|+||
T Consensus 91 ~~~~~~~~----~----~~~~~~~~~~~~~~~l~~~~~~~~~-----~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllD 157 (231)
T d1l7vc_ 91 HYLTLHQH----D----KTRTELLNDVAGALALDDKLGRSTN-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 157 (231)
T ss_dssp HHHHHHCS----C----TTCHHHHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEES
T ss_pred HHHHHCCC----H----HHHHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 87641001----4----6689999999986598767676844-----569988999999999985171338998899971
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCC
Q ss_conf 79999999999999999999884998799995685199998627188991695999935898
Q 000615 1032 EPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLG 1093 (1389)
Q Consensus 1032 EPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~~ 1093 (1389)
|||+|||+.++..+++.+++++++|.|||+++|+++ ++...+|++++|. +|++++.|++.
T Consensus 158 EPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~-~~~~~~dri~vl~-~G~iv~~G~~~ 217 (231)
T d1l7vc_ 158 EPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN-HTLRHAHRAWLLK-GGKMLASGRRE 217 (231)
T ss_dssp SCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHH-HHHHHCSBCCBEE-TTEECCCSBHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECCHH
T ss_conf 877778989999999999999867999999967799-9999799999997-99899988999
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.6e-40 Score=276.24 Aligned_cols=188 Identities=22% Similarity=0.383 Sum_probs=149.7
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHH
Q ss_conf 15510203588478199996468994678996452998896379999995903882312021668424897899999999
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYE 959 (1389)
Q Consensus 880 ~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E 959 (1389)
..+|+|||+.+++|+++||+||||||||||+++|+|...+ .+|.|.++|. ++|++|++.+++ .||+|
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p--~~G~I~~~g~----------i~~v~Q~~~l~~-~tv~e 115 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA--SEGIIKHSGR----------VSFCSQFSWIMP-GTIKE 115 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC--SEEEEECCSC----------EEEECSSCCCCS-EEHHH
T ss_pred CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCE----------EEEEECCCCCCC-CEEEC
T ss_conf 7677375999859999999989998299999999579747--8828999999----------999816430267-60321
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHH-------CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEC
Q ss_conf 99988873059998399999999999998-------29955433334699887889989999999999963999720307
Q 000615 960 SLLYSAWLRLSSDVDTKKRKMFVDEVMEL-------VELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDE 1032 (1389)
Q Consensus 960 ~l~f~a~lr~~~~~~~~~~~~~v~~vl~~-------l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDE 1032 (1389)
++.|... ..... .+++++. ..+.+..++.++..+ ..||||||||++||++|+.+|+||+|||
T Consensus 116 ni~~~~~------~~~~~----~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~LSgGqkQRv~lARaL~~~p~illLDE 184 (281)
T d1r0wa_ 116 NIIFGVS------YDEYR----YKSVVKACQLQQDITKFAEQDNTVLGEGG-VTLSGGQRARISLARAVYKDADLYLLDS 184 (281)
T ss_dssp HHTTTSC------CCHHH----HHHHHHHTTCHHHHTTSTTGGGCEECTTC-TTSCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCCCC------CCCHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 4203334------56057----99999997769999846123323555542-3779999999999999986963513338
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCC
Q ss_conf 99999999999999999998849987999956851999986271889916959999358985
Q 000615 1033 PTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGH 1094 (1389)
Q Consensus 1033 PTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~~~ 1094 (1389)
||++||+.+...+++.+......++|+|+++|++ +....+|++++|. +|++++.|++.+
T Consensus 185 Pts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~--~~l~~aDrI~vl~-~G~i~~~Gt~~e 243 (281)
T d1r0wa_ 185 PFGYLDVFTEEQVFESCVCKLMANKTRILVTSKM--EHLRKADKILILH-QGSSYFYGTFSE 243 (281)
T ss_dssp CCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCH--HHHHTCSEEEEEE-TTEEEEEECHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHH--HHHHHCCEEEEEE-CCEEEEECCHHH
T ss_conf 5544898999999999998862899999992528--9998599999998-999999878999
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-39 Score=269.42 Aligned_cols=197 Identities=25% Similarity=0.361 Sum_probs=166.5
Q ss_pred EEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCC---CEEEEECCCCCCCCCCCH
Q ss_conf 75501778838839999859999679999999439399998401999979607998767---328995479988999999
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQ---RTCAYISQHDLHHGEMTV 262 (1389)
Q Consensus 186 IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~---r~~aYV~Q~D~h~~~lTV 262 (1389)
.|+|||+.+++||+++|+||||||||||+++|+|.. +. +|+|.++|.++.....+ ...+|++|+.......++
T Consensus 14 ~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~---~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v 89 (231)
T d1l7vc_ 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SG---KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 89 (231)
T ss_dssp TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CC---SSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBH
T ss_pred EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CC---CEEEEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCH
T ss_conf 555888899489899999899980999999994887-99---55999999999869989998640245121357744209
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99999720104776125677885599886199999118999999985111103469999998099643454335745667
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRG 342 (1389)
Q Consensus 263 rEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rG 342 (1389)
.+.+.+...-+. .....+.+++.++|++..+..+++
T Consensus 90 ~~~~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~----- 125 (231)
T d1l7vc_ 90 WHYLTLHQHDKT---------------------------------------RTELLNDVAGALALDDKLGRSTNQ----- 125 (231)
T ss_dssp HHHHHHHCSCTT---------------------------------------CHHHHHHHHHHTTCTTTTTSBGGG-----
T ss_pred HHHHHHCCCHHH---------------------------------------HHHHHHHHHHHCCCHHHHCCCHHH-----
T ss_conf 887641001466---------------------------------------899999999865987676768445-----
Q ss_pred CCHHHHHHHHHHHHHHC-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEE
Q ss_conf 88567668999999862-------99683984698899968799999999999882897599998149213885238699
Q 000615 343 ISGGQKKRVTTGEMLVG-------TANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 343 LSGGQKkRvsiaeaLv~-------~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~Ii 415 (1389)
+||||||||++|++++. +|++++|||||+|||..++..+.+.+++++. .+.|++++.|. ..++.+++|+++
T Consensus 126 LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHd-l~~~~~~~dri~ 203 (231)
T d1l7vc_ 126 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHD-LNHTLRHAHRAW 203 (231)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCC-HHHHHHHCSBCC
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHHHHHCCEEE
T ss_conf 6998899999999998517133899889997187777898999999999999986-79999999677-999999799999
Q ss_pred EECCCEEEEECCHHHHH
Q ss_conf 97498189963956799
Q 000615 416 LLSEGQIVYQGPRDNVL 432 (1389)
Q Consensus 416 lLs~G~ivy~Gp~~~~~ 432 (1389)
+|.+|+++++|+++++.
T Consensus 204 vl~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 204 LLKGGKMLASGRREEVL 220 (231)
T ss_dssp BEETTEECCCSBHHHHS
T ss_pred EEECCEEEEECCHHHHH
T ss_conf 99799899988999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=2e-37 Score=258.33 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=105.7
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHH
Q ss_conf 55102035884781999964689946789964529988963799999959038823120216684248978999999999
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1389)
Q Consensus 881 ~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 960 (1389)
.+|+|||+.+++|+++||+||||||||||+++|+|...+ .+|+|.++|.+..+ .+..++|++|+..+...+|++|+
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p--~~G~I~~~g~~i~~--~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVPITK--VKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC--SEEEEEETTEEGGG--GGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEHHH--HCCCEEEEEECCCCCCCCCHHHH
T ss_conf 288420889859989999999997199999999662056--77889999896267--36708999501357888289999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH
Q ss_conf 99888730599983999999999999982995543333469988788998999999999996399972030799999999
Q 000615 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1389)
Q Consensus 961 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~ 1040 (1389)
+.+.+.++... .+.+ .+.+.++.+++.+... .+ ..||||||||+.||++|+.+|++++|||||+|||+.
T Consensus 91 l~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~-~~-----~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~ 159 (200)
T d1sgwa_ 91 LKAVASLYGVK-VNKN----EIMDALESVEVLDLKK-KL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 159 (200)
T ss_dssp HHHHHHHTTCC-CCHH----HHHHHHHHTTCCCTTS-BG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTT
T ss_pred HHHHHHHCCCC-CCHH----HHHHHHHHCCCCCCCC-CC-----CCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHH
T ss_conf 99999754886-3799----9999998748856301-26-----868971888899999886499899986862016999
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 99999999999884998799995685199998627188991
Q 000615 1041 AAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1041 ~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~ 1081 (1389)
++..+++.++++.+++.++++++|+. ...||.+..|.
T Consensus 160 ~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~ 196 (200)
T d1sgwa_ 160 SKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLH 196 (200)
T ss_dssp THHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEE
T ss_conf 99999999999986799999999162----54416123401
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=3.4e-36 Score=250.21 Aligned_cols=183 Identities=17% Similarity=0.276 Sum_probs=148.0
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCCCCHHH
Q ss_conf 67550177883883999985999967999999943939999840199997960799876732899547998899999999
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGEMTVRE 264 (1389)
Q Consensus 185 ~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~D~h~~~lTVrE 264 (1389)
++|+|||+.+++|++++|+||||||||||+++|+|.++|. +|+|.+||++..+. ++.++|++|+..+...+|++|
T Consensus 15 ~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~---~G~I~~~g~~i~~~--~~~i~~~~~~~~~~~~~t~~~ 89 (200)
T d1sgwa_ 15 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPITKV--KGKIFFLPEEIIVPRKISVED 89 (200)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGG--GGGEEEECSSCCCCTTSBHHH
T ss_pred EEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCEEEECCEEHHHH--CCCEEEEEECCCCCCCCCHHH
T ss_conf 2884208898599899999999971999999996620567---78899998962673--670899950135788828999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 99972010477612567788559988619999911899999998511110346999999809964345433574566788
Q 000615 265 TLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEMRRGIS 344 (1389)
Q Consensus 265 tL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~~rGLS 344 (1389)
++.+.+...+.... .++ +...++.+++.+. +..+++ ||
T Consensus 90 ~l~~~~~~~~~~~~---------------------~~~---------------~~~~l~~~~~~~~-~~~~~~-----LS 127 (200)
T d1sgwa_ 90 YLKAVASLYGVKVN---------------------KNE---------------IMDALESVEVLDL-KKKLGE-----LS 127 (200)
T ss_dssp HHHHHHHHTTCCCC---------------------HHH---------------HHHHHHHTTCCCT-TSBGGG-----SC
T ss_pred HHHHHHHHCCCCCC---------------------HHH---------------HHHHHHHCCCCCC-CCCCCC-----CC
T ss_conf 99999975488637---------------------999---------------9999987488563-012686-----89
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECC
Q ss_conf 567668999999862996839846988999687999999999998828975999981492138852386999749
Q 000615 345 GGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 345 GGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~ 419 (1389)
||||||+.+|++++.+|++++|||||+|||..++..+++.++++.+..+ +++++.|+. .+++|.+.+|.+
T Consensus 128 gG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~-~~ii~~~~~----l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 128 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKG-IVIISSREE----LSYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHS-EEEEEESSC----CTTSSEEEEGGG
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC-EEEEEEECH----HHHCCHHHHEEE
T ss_conf 7188889999988649989998686201699999999999999986799-999999162----544161234010
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.37 E-value=2.5e-14 Score=107.18 Aligned_cols=78 Identities=14% Similarity=0.128 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCEE
Q ss_conf 88567668999999862996839846988999687999999999998828975999981492138852386999749818
Q 000615 343 ISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQI 422 (1389)
Q Consensus 343 LSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~i 422 (1389)
+++|+++|.++++++..+|+++++|||.. +.......+..+.+.....+.+++++.|+. +...+.|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEECCCCC--CCHHHHHHHHHHHHHHCCCCCEEEEEECCH--HHHHHHCEEEEEECCEE
T ss_conf 53201378999999740997423027773--100457999999987505797899997447--78986365998719999
Q ss_pred EE
Q ss_conf 99
Q 000615 423 VY 424 (1389)
Q Consensus 423 vy 424 (1389)
+.
T Consensus 158 ~~ 159 (178)
T d1ye8a1 158 IE 159 (178)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.22 E-value=3.7e-13 Score=99.47 Aligned_cols=161 Identities=17% Similarity=0.073 Sum_probs=92.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 99996468994678996452998896379999995903882312021668424897899999999999888730599983
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVD 974 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~ 974 (1389)
.++|.||||||||||+++|+|.... ..|.+.+.+.+..... +..++..+........ ............
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~--~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~~~~~~~~~~~~- 70 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK--RAIGFWTEEVRDPETK--KRTGFRIITTEGKKKI------FSSKFFTSKKLV- 70 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG--GEEEEEEEEEC--------CCEEEEEETTCCEEE------EEETTCCCSSEE-
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCC--CCCEEEECCCCHHHHH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHH-
T ss_conf 8999989993899999999814888--8646998771328888--7653112336677788------754113455443-
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHH-
Q ss_conf 9999999999999829955433334699887889989999999999963999720307999999999999999999988-
Q 000615 975 TKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTV- 1053 (1389)
Q Consensus 975 ~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~- 1053 (1389)
+...-......+++|++++..++.++..+|+++++|||+...+ ........+.+..
T Consensus 71 ---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~~~l~ 127 (178)
T d1ye8a1 71 ---------------------GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVRQIMH 127 (178)
T ss_dssp ---------------------TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHHHHHT
T ss_pred ---------------------HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCH--HHHHHHHHHHHHHC
T ss_conf ---------------------0230376256653201378999999740997423027773100--45799999998750
Q ss_pred HCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 499879999568519999862718899169599993589
Q 000615 1054 DTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1054 ~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
+.+.++++++|+.+ ....+|++..+. +|+++.-++.
T Consensus 128 ~~~~~il~~~h~~~--~~~~~~~i~~~~-~~~i~~v~~~ 163 (178)
T d1ye8a1 128 DPNVNVVATIPIRD--VHPLVKEIRRLP-GAVLIELTPE 163 (178)
T ss_dssp CTTSEEEEECCSSC--CSHHHHHHHTCT-TCEEEECCTT
T ss_pred CCCCEEEEEECCHH--HHHHHCEEEEEE-CCEEEEECCC
T ss_conf 57978999974477--898636599871-9999998996
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.10 E-value=8.3e-10 Score=77.56 Aligned_cols=73 Identities=22% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCCCHHHHHHHHHHHHHH----HCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 788998999999999996----3999720307999999999999999999988499879999568519999862718899
Q 000615 1005 SGLSTEQRKRLTIAVELV----ANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1005 ~~LSgGqrkrl~Ia~~L~----~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl 1080 (1389)
..+|.|||+...++..++ .++++++.|||-++|++.....+.+.++..++ ..-|++|+|.|. +.+.+|+++.+
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~v 294 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHGV 294 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEEE
T ss_conf 102577766777776655654226744554320335797899999999998554-887999989889--99732428999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=1.9e-08 Score=68.68 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=61.8
Q ss_pred CCCCCHHHHHHHHHHHH----HHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEE
Q ss_conf 66788567668999999----86299683984698899968799999999999882897599998149213885238699
Q 000615 340 RRGISGGQKKRVTTGEM----LVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDII 415 (1389)
Q Consensus 340 ~rGLSGGQKkRvsiaea----Lv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~Ii 415 (1389)
..-+|+|||+...++.. ...++++++.|||-++|++.....+.+.|+..+. +.-++++. |+|++++.+|+++
T Consensus 217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitT--Hsp~~~~~~d~~~ 292 (308)
T d1e69a_ 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVIT--HNKIVMEAADLLH 292 (308)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEEC--CCTTGGGGCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEE--CCHHHHHHCCCEE
T ss_conf 1102577766777776655654226744554320335797899999999998554--88799998--9889997324289
Q ss_pred E--ECCC
Q ss_conf 9--7498
Q 000615 416 L--LSEG 420 (1389)
Q Consensus 416 l--Ls~G 420 (1389)
. +.+|
T Consensus 293 ~v~~~~g 299 (308)
T d1e69a_ 293 GVTMVNG 299 (308)
T ss_dssp EEEESSS
T ss_pred EEEEECC
T ss_conf 9999699
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=4.7e-09 Score=72.60 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=62.4
Q ss_pred CCCCHHHHHHHHHHHHH----HHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEE
Q ss_conf 78899899999999999----63999720307999999999999999999988499879999568519999862718899
Q 000615 1005 SGLSTEQRKRLTIAVEL----VANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLL 1080 (1389)
Q Consensus 1005 ~~LSgGqrkrl~Ia~~L----~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl 1080 (1389)
..+|||||.++++|.-+ ..++++++||||+++||+.....+.+.|++++..+..+++|+|+| ++....|..+.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf 332230479999999999954799977999688777899999999999999728998899995878--999736617999
Q ss_pred E
Q ss_conf 1
Q 000615 1081 K 1081 (1389)
Q Consensus 1081 ~ 1081 (1389)
.
T Consensus 409 ~ 409 (427)
T d1w1wa_ 409 Y 409 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.58 E-value=1.2e-07 Score=63.46 Aligned_cols=74 Identities=19% Similarity=0.367 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHH----HCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEE
Q ss_conf 67885676689999998----62996839846988999687999999999998828975999981492138852386999
Q 000615 341 RGISGGQKKRVTTGEML----VGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIIL 416 (1389)
Q Consensus 341 rGLSGGQKkRvsiaeaL----v~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~Iil 416 (1389)
+-+|||||.++++|-.+ +.++++++||||.++||+.....+.+.|++++. .+.-+|++.|+ |++.+.+|.++.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~--~~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLK--NTMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSC--HHHHTTCSEEEE
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCCEEEEEECC--HHHHHHCCCEEE
T ss_conf 332230479999999999954799977999688777899999999999999728-99889999587--899973661799
Q ss_pred E
Q ss_conf 7
Q 000615 417 L 417 (1389)
Q Consensus 417 L 417 (1389)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
T ss_conf 9
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.81 E-value=0.00025 Score=41.70 Aligned_cols=29 Identities=28% Similarity=0.371 Sum_probs=21.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78838839999859999679999999439
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
|=+++|++++|.||||||||+|+.-++-.
T Consensus 21 GGi~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 21 GGFFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89869849999918999999999999999
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.80 E-value=1.2e-05 Score=50.32 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=17.2
Q ss_pred EEEEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 550177883883999985999967999999943
Q 000615 187 LKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 187 L~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG 219 (1389)
|+++.+=++||++++|.|+||+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 888746978980899994799979999999997
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.79 E-value=0.00049 Score=39.78 Aligned_cols=34 Identities=24% Similarity=0.165 Sum_probs=28.8
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 5102035884781999964689946789964529
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 882 iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
-|+++.+-++||+++.|.|++|+|||||+.-++-
T Consensus 24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 6888746978980899994799979999999997
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.69 E-value=0.00033 Score=40.92 Aligned_cols=60 Identities=10% Similarity=0.189 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHH-HHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf 999999999996399972030799999999999-99999999884998799995685199998
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAA-IVMRTVRNTVDTGRTVVCTIHQPSIDIFE 1072 (1389)
Q Consensus 1011 qrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~-~i~~~l~~~~~~g~tvi~t~Hqps~~~~~ 1072 (1389)
|-+++.-....+.+.+++++||..+|-|+.... .....+..+.+.+..+++++|.. ++..
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~ 161 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTA 161 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHT
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHH
T ss_conf 678898775028977278554545686233200258888888862376137865202--3332
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.00049 Score=39.78 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHH-HHHHHHHHHC-CCEEEEEECCCCH
Q ss_conf 99999999999639997203079999999999999-9999998849-9879999568519
Q 000615 1011 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIV-MRTVRNTVDT-GRTVVCTIHQPSI 1068 (1389)
Q Consensus 1011 qrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i-~~~l~~~~~~-g~tvi~t~Hqps~ 1068 (1389)
|-+++.-......+.+++++||+.+|-++.....+ ...+..+... +..+++++|....
T Consensus 107 E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l 166 (234)
T d1wb9a2 107 EMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFEL 166 (234)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHH
T ss_conf 999999999745466088532223587745666789876454320454428985246877
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.61 E-value=0.0013 Score=36.94 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=27.5
Q ss_pred HCCCCEEEEECCCC---C--CCHHHHHHHHHHHHHHHHHCCCEEEEEEEC
Q ss_conf 62996839846988---9--996879999999999988289759999814
Q 000615 358 VGTANVLYMDEIST---G--LDSSTTFQICKFLKQMVHILDVTMIVALLQ 402 (1389)
Q Consensus 358 v~~~~vLlLDEpTS---G--LDs~ta~~I~~~Lr~la~~~~~Tviisl~Q 402 (1389)
..+++++++|..+. | -|.....++++.|+.++...+.++++..|.
T Consensus 130 ~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 130 AEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred CCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf 26765896281354226652322568999988777764479754013100
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.58 E-value=0.00049 Score=39.77 Aligned_cols=61 Identities=15% Similarity=0.093 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHHHCCCEEEEEEECCCCHHHHH
Q ss_conf 7668999999862996839846988999687999999-999998828975999981492138852
Q 000615 347 QKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICK-FLKQMVHILDVTMIVALLQPAPETYDL 410 (1389)
Q Consensus 347 QKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~-~Lr~la~~~~~Tviisl~Qps~e~~~l 410 (1389)
|-+|++-.-...+..+++++||+.+|=|+.....+.. .+..+... +..++++.|.+ |+-++
T Consensus 101 el~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~-~~~~i~tTH~~--eL~~l 162 (224)
T d1ewqa2 101 EMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHER-RAYTLFATHYF--ELTAL 162 (224)
T ss_dssp HHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH-TCEEEEECCCH--HHHTC
T ss_pred HHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHC-CCCEEEEEECH--HHHHH
T ss_conf 6788987750289772785545456862332002588888888623-76137865202--33322
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=5.9e-05 Score=45.83 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=14.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996799999994393
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
|+.++++|+||.|||||+|+|.|..
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 9808997889877888877305355
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.36 E-value=0.0022 Score=35.54 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=22.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 3588478199996468994678996452998
Q 000615 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 887 s~~i~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
...++.+.-+.+.|+.||||||||++|.+..
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i 190 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI 190 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGS
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9999837888999403566257899986530
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=0.00017 Score=42.84 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHH-HHHHHHHCCCEEEEEEECC
Q ss_conf 676689999998629968398469889996879999999-9999882897599998149
Q 000615 346 GQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKF-LKQMVHILDVTMIVALLQP 403 (1389)
Q Consensus 346 GQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~-Lr~la~~~~~Tviisl~Qp 403 (1389)
.|-+|++-.-.-.++.+++++||+.+|=++.....+... ++.+....+..++++.|.+
T Consensus 106 ~E~~~~~~il~~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 106 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred HHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 99999999997454660885322235877456667898764543204544289852468
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.19 E-value=0.00014 Score=43.31 Aligned_cols=27 Identities=44% Similarity=0.636 Sum_probs=18.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.|++.+|.|||||||||+.+.|+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00016 Score=42.96 Aligned_cols=25 Identities=32% Similarity=0.349 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999679999999439399
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
+++|.|+||||||||++.|+.++..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.05 E-value=0.0065 Score=32.43 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=12.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 7883883999985999967999999
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLA 216 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~ 216 (1389)
|=+++|+++.|.|+||+|||+|+.-
T Consensus 21 GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 21 GGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHH
T ss_conf 8996983999994799999999999
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.01 E-value=0.00019 Score=42.56 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=20.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999967999999943939
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
|++.+|+||||||||||++.|..+.+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 74999989999999999999984589
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00017 Score=42.85 Aligned_cols=28 Identities=25% Similarity=0.479 Sum_probs=21.1
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999967999999943939
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.+++..|+|||||||||+.+.|+.+++
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 9871899989999898999999999869
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.99 E-value=6.8e-05 Score=45.42 Aligned_cols=25 Identities=32% Similarity=0.636 Sum_probs=13.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8399998599996799999994393
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
|+.++++|+||.|||||+|+|.|..
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 5649998778734878987515176
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.96 E-value=0.00026 Score=41.59 Aligned_cols=26 Identities=27% Similarity=0.620 Sum_probs=23.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78199996468994678996452998
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+|+.++++|+||+|||||+|.|.+..
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~ 119 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGL 119 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 69808997889877888877305355
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.0088 Score=31.60 Aligned_cols=149 Identities=18% Similarity=0.182 Sum_probs=68.9
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 84781999964689946789964529988963799999959038823120216684248978999999999998887305
Q 000615 890 FRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL 969 (1389)
Q Consensus 890 i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 969 (1389)
+.||+++.|.|++|+|||||+.-|+.....|. . . .+..... ...+-|+.-++.. -.+.+ .+.+. .
T Consensus 26 ~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~---~-~-~~~~~~~---~~~vl~~~~E~~~---~~~~~--Rl~~~-~- 90 (274)
T d1nlfa_ 26 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGP---D-L-LEVGELP---TGPVIYLPAEDPP---TAIHH--RLHAL-G- 90 (274)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCC---C-T-TCCCCCC---CCCEEEEESSSCH---HHHHH--HHHHH-H-
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHCCC---C-C-CCCCCCC---CCCEEEEECCCHH---HHHHH--HHHHH-H-
T ss_conf 55895899992899989999999999997699---7-2-1112357---8736898512349---99999--99998-6-
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC---C--CCHHHHHH
Q ss_conf 999839999999999999829955433334699887889989999999999963999720307999---9--99999999
Q 000615 970 SSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS---G--LDARAAAI 1044 (1389)
Q Consensus 970 ~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTs---G--LD~~~~~~ 1044 (1389)
.+.+.... ......+.+.+..+... ....-... .-......+|+++++|--+. + -|......
T Consensus 91 -~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~ 157 (274)
T d1nlfa_ 91 -AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAPEWF---DGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 157 (274)
T ss_dssp -TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSHHHH---HHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHHHHH---HHHHHHCCCCCEEECCCHHHHCCCCCCCHHHHHH
T ss_conf -23686665----31233323214567420-----35789999---9988752676589628135422665232256899
Q ss_pred HHHHHHHHHHC-CCEEEEEECCC
Q ss_conf 99999998849-98799995685
Q 000615 1045 VMRTVRNTVDT-GRTVVCTIHQP 1066 (1389)
Q Consensus 1045 i~~~l~~~~~~-g~tvi~t~Hqp 1066 (1389)
+++.++.++.. +.+|+++.|..
T Consensus 158 ~~~~l~~la~~~~~~vi~v~H~~ 180 (274)
T d1nlfa_ 158 VIGRMEAIAADTGCSIVFLHHAS 180 (274)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC-
T ss_pred HHHHHHHHHHCCCCCEEHHHHCC
T ss_conf 99887777644797540131005
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.00045 Score=40.07 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=21.9
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 788388399998599996799999994393
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
|=++||+++.|.||||||||||+.-++...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 898599799999589999999999999999
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.76 E-value=0.00032 Score=40.97 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=17.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999967999999943939
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.|.+..|.|+|||||||+-+.|+-++.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9976999889999999999999999986
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.74 E-value=0.00036 Score=40.70 Aligned_cols=39 Identities=26% Similarity=0.298 Sum_probs=21.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCE
Q ss_conf 399998599996799999994393999984019999796
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGH 236 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~ 236 (1389)
++..|.|++|||||||+..|..++......-|.|..+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.71 E-value=0.00048 Score=39.86 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=22.6
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999679999999439399
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
...++.||||||||||.++|++.+..
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 79998897998899999999998651
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.71 E-value=0.00046 Score=40.00 Aligned_cols=28 Identities=32% Similarity=0.529 Sum_probs=20.7
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999967999999943939
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
++|--.+|.|||||||||+.+.|+-+++
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.68 E-value=0.0004 Score=40.37 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=16.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996799999994393
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
+..+|.||||||||||.+.|+.++
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.68 E-value=0.00046 Score=39.98 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996468994678996452998
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
|.++.|+||||||||||++.|..+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7499998999999999999998458
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.67 E-value=0.00047 Score=39.91 Aligned_cols=25 Identities=36% Similarity=0.674 Sum_probs=17.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999967999999943939
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+.+|.|||||||||+.+.|+.+++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.66 E-value=0.00066 Score=38.96 Aligned_cols=24 Identities=33% Similarity=0.598 Sum_probs=13.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 839999859999679999999439
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
|.+..|+||||||||||.+.|.-+
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 809999999999999999999863
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.61 E-value=0.00053 Score=39.59 Aligned_cols=27 Identities=44% Similarity=0.630 Sum_probs=20.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 388399998599996799999994393
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
++|--.+++|||||||||+.+.||-++
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.61 E-value=0.00055 Score=39.45 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=9.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964689946789964529
Q 000615 896 TALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag 915 (1389)
++|+|++|+|||||++.|.|
T Consensus 26 I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 26 IALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEBTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHCC
T ss_conf 99989999879999998529
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.58 E-value=0.00071 Score=38.75 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+++|.||+|||||||++.|...+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899839999999999884
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.58 E-value=0.00041 Score=40.31 Aligned_cols=27 Identities=33% Similarity=0.567 Sum_probs=21.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 388399998599996799999994393
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
+.+.+..|+|||||||||+.+.|+-++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.56 E-value=0.00088 Score=38.13 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=22.1
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78838839999859999679999999439
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
|=+++|++++|.||||||||||..-++-.
T Consensus 29 GGi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 29 GGVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SSEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869969999838999889999999998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.51 E-value=0.00073 Score=38.66 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=13.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999967999999943939
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
++.+|.|+|||||||+.+.|+.+++
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 5999989999998999999999728
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.51 E-value=0.00054 Score=39.53 Aligned_cols=23 Identities=61% Similarity=0.794 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+|.|||||||||+.+.|+-+++
T Consensus 7 I~i~G~pGsGKTTia~~La~~l~ 29 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASKSG 29 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 98989999998999999999979
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.51 E-value=0.0013 Score=37.10 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=26.1
Q ss_pred EEE-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 550-17788388399998599996799999994393
Q 000615 187 LKD-VSGIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 187 L~~-VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
|++ +.|-+++|++++|.|+||+|||||..-++-..
T Consensus 23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997207986288599999179999899999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.48 E-value=0.0022 Score=35.58 Aligned_cols=52 Identities=25% Similarity=0.395 Sum_probs=36.2
Q ss_pred HHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEE
Q ss_conf 9999963999720307999999999999999999988499879999568519999862718
Q 000615 1017 IAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDEL 1077 (1389)
Q Consensus 1017 Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~i 1077 (1389)
+..+|=.+|++++..|.. |..++...+ +.+.+|+.|+.|.|-.+ .+..++++
T Consensus 220 l~~~lR~dPDvi~igEiR---d~~ta~~a~----~aa~tGhlV~tTlHa~~--a~~~~~Rl 271 (401)
T d1p9ra_ 220 LRAILRQDPDVVMVGEIR---DLETAQIAV----QASLTGHLVMSTLHTNT--AVGAVTRL 271 (401)
T ss_dssp HHHHGGGCCSEEEESCCC---SHHHHHHHH----HHHHTTCEEEEEECCSS--SHHHHHHH
T ss_pred HHHHHHHCCCEEEECCCC---CHHHHHHHH----HHHHCCCEEEEEECCCC--HHHHHHHH
T ss_conf 999984138889845768---759999999----99724985899833676--67665432
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.48 E-value=0.00099 Score=37.79 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=18.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999679999999439
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
++..+.||||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.46 E-value=0.00032 Score=41.02 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78199996468994678996452998
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.|..++++|+||+|||||+|.|.+..
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~ 121 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPEL 121 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHH
T ss_conf 35649998778734878987515176
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.0008 Score=38.41 Aligned_cols=25 Identities=36% Similarity=0.529 Sum_probs=20.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999967999999943939
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+.+|+|||||||||+.+.|+.++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g 33 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYS 33 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999998999999999859
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0077 Score=31.98 Aligned_cols=27 Identities=44% Similarity=0.740 Sum_probs=19.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.+-+++.||||+|||++.++||..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 888678668998882289999999829
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.43 E-value=0.00065 Score=38.97 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996799999994393
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+.+|+|||||||||+.+.|+-++
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 489998999998899999999997
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.41 E-value=0.0014 Score=36.76 Aligned_cols=29 Identities=34% Similarity=0.460 Sum_probs=22.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 77883883999985999967999999943
Q 000615 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 191 Sg~i~pG~ltaIlGpsGSGKSTLL~~LaG 219 (1389)
.|=+++|++++|.||||||||||..-++-
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69955887999985898988999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.39 E-value=0.001 Score=37.73 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78199996468994678996452998
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.|+++.|.|++||||||+.+.|+.+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.35 E-value=0.00062 Score=39.12 Aligned_cols=26 Identities=46% Similarity=0.718 Sum_probs=21.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999679999999439399
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
+.+.|.||||+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 69999889997199999999999997
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00099 Score=37.81 Aligned_cols=22 Identities=45% Similarity=0.533 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+++|+|++|||||||++.|+.+
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~ 25 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPA 25 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918999899999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.0011 Score=37.40 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.|.++.|+||||+|||||++.|..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~ 25 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKT 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9809999999999999999999863
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.25 E-value=0.0016 Score=36.35 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=15.3
Q ss_pred CEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 83999985999967999999943
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG 219 (1389)
-++.+++|+|||||||+.+.|+.
T Consensus 14 p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTG
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 98999989999989999999997
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0011 Score=37.45 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..+|+|||||||||..+.|+-++.
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g 26 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYG 26 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999979999998999999999869
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.21 E-value=0.0014 Score=36.88 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
.++|+|+||+|||||++.|.|.
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998899999999679
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.20 E-value=0.0013 Score=37.00 Aligned_cols=27 Identities=33% Similarity=0.555 Sum_probs=21.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
|+.-.+++||||+|||.|.++||..+.
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 986699989999888899999862132
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.19 E-value=0.0012 Score=37.35 Aligned_cols=26 Identities=31% Similarity=0.466 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999679999999439399
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
++.+|.|+|||||||+.+.|+-++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.17 E-value=0.0011 Score=37.56 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~ 25 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.16 E-value=0.001 Score=37.74 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..|+|||||||||+.+.|+-++.
T Consensus 6 I~i~GppGsGKsT~a~~La~~~~ 28 (189)
T d1zaka1 6 VMISGAPASGKGTQCELIKTKYQ 28 (189)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999998999999999879
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.13 E-value=0.0015 Score=36.58 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|+||+|||||+|+|.|+
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998899999999689
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0018 Score=36.11 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=13.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996799999994393
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
-..+|.||||||||||++.|...+
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289743899998999999999999
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=7.4e-05 Score=45.17 Aligned_cols=32 Identities=31% Similarity=0.241 Sum_probs=20.4
Q ss_pred EEEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 501778838839999859999679999999439
Q 000615 188 KDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 188 ~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
++.+..+.+| +|+|.||+||||||+|.+|.--
T Consensus 16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEEECCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 0279974998-0899889999879999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.11 E-value=0.0015 Score=36.53 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
..+|+|+||+|||||+++|.|+-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.09 E-value=0.0024 Score=35.31 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=19.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7883883999985999967999999943
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG 219 (1389)
|=+++|++++|.||||||||+|...++.
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9976897999988998878899999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.08 E-value=0.0015 Score=36.67 Aligned_cols=24 Identities=25% Similarity=0.535 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
-.+|+|||||||||+-+.|+-++.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 699988999987999999999979
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.07 E-value=0.0011 Score=37.48 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=10.9
Q ss_pred CEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 81999964689946789964529
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
|.++.|+|++||||||+.+.|+.
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~ 41 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEE 41 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
T ss_conf 96999889999999999999999
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.01 E-value=0.0065 Score=32.44 Aligned_cols=23 Identities=57% Similarity=0.921 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.++.||||+|||+|.++|+..+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 88766898883599999998739
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.00 E-value=0.0024 Score=35.29 Aligned_cols=21 Identities=43% Similarity=0.708 Sum_probs=10.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|++|+|||||++.|.|.
T Consensus 3 V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 3 VLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999899999999677
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.00 E-value=0.0019 Score=35.95 Aligned_cols=27 Identities=33% Similarity=0.489 Sum_probs=23.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.+.++.|+|++||||||+.+.|+.+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.99 E-value=0.0015 Score=36.66 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g 25 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYG 25 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999987999999999879
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.99 E-value=0.0021 Score=35.69 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
-.+|+|.+|+|||||+|+|.|+-
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.98 E-value=0.0013 Score=36.92 Aligned_cols=20 Identities=35% Similarity=0.692 Sum_probs=10.8
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964689946789964529
Q 000615 896 TALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag 915 (1389)
+||+|++++|||||++.|+|
T Consensus 4 VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEE
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99989999879999999968
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.98 E-value=0.00012 Score=43.72 Aligned_cols=33 Identities=27% Similarity=0.255 Sum_probs=26.8
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 5102035884781999964689946789964529
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 882 iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
-+++.++.+.+| ++.|+|+|||||||++++|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.97 E-value=0.0023 Score=35.36 Aligned_cols=21 Identities=38% Similarity=0.654 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++++|++|+|||||+++|.|.
T Consensus 11 V~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 11 VAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999778
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.92 E-value=0.0022 Score=35.55 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=18.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999967999999943939
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
++..|+||||+||+||++.|..+.+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 7199999899999999999997097
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.92 E-value=0.0014 Score=36.91 Aligned_cols=38 Identities=29% Similarity=0.423 Sum_probs=26.1
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC-CCEEEEEEEECCC
Q ss_conf 1999964689946789964529988-9637999999590
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIKISGY 931 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~~-~g~~~G~i~i~g~ 931 (1389)
.+++|+|.+|||||||+..|..+.. .|..-+.|.-+++
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~ 40 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH 40 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 099998099998999999999999867983799983167
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.90 E-value=0.0019 Score=35.93 Aligned_cols=23 Identities=48% Similarity=0.725 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..|.|||||||||+-+.||-+++
T Consensus 5 I~l~G~~GsGKSTvak~La~~L~ 27 (169)
T d1kaga_ 5 IFLVGPMGAGKSTIGRQLAQQLN 27 (169)
T ss_dssp EEEECCTTSCHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999999999999999969
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.90 E-value=0.0022 Score=35.48 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.|.++.|.|++||||||+.+.|+.+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0017 Score=36.32 Aligned_cols=24 Identities=33% Similarity=0.573 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..+|+|||||||+||++.|+.+.+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.88 E-value=0.0021 Score=35.61 Aligned_cols=24 Identities=50% Similarity=0.821 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..++-||||+||||+.++||..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.002 Score=35.78 Aligned_cols=24 Identities=46% Similarity=0.607 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.+|.|||||||+|+-+.|+.++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.86 E-value=0.01 Score=31.23 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=10.3
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964689946789964529
Q 000615 896 TALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag 915 (1389)
+-|.||+|+|||+|.+++++
T Consensus 44 iLL~Gp~GtGKT~l~~ala~ 63 (265)
T d1r7ra3 44 VLFYGPPGCGKTLLAKAIAN 63 (265)
T ss_dssp EEEBCCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 78878998763047788787
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0023 Score=35.44 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+..-+.|.||+|+|||+|.+.|+..
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~ 68 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGE 68 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHH
T ss_conf 8886786689988822899999998
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0035 Score=34.19 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=33.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCCC
Q ss_conf 9999859999679999999439399998401999979607998767328995479988999
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHGE 259 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~D~h~~~ 259 (1389)
+.+|-|+|||||||+.+.|...+... .....+..++++|.|.+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~-----------------~~~~~v~~Is~D~F~~~~ 125 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRW-----------------PEHRRVELITTDGFLHPN 125 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTS-----------------TTCCCEEEEEGGGGBCCH
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHH-----------------CCCCCEEEEEEEEEECCC
T ss_conf 99996899998768999999997304-----------------689965999521568984
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0028 Score=34.89 Aligned_cols=22 Identities=27% Similarity=0.480 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+|+|.||+|||||+|+|.|.-
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999997899999995888
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.84 E-value=0.0021 Score=35.62 Aligned_cols=25 Identities=40% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999967999999943939
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+-+++.||||+|||++.++||..++
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 0799889699988999999862010
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.84 E-value=0.0021 Score=35.73 Aligned_cols=29 Identities=45% Similarity=0.741 Sum_probs=24.1
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83883999985999967999999943939
Q 000615 194 VKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 194 i~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+++.+-.+|-||||+|||+|.+++|+.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99887578878998763047788787718
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.83 E-value=0.0019 Score=35.87 Aligned_cols=23 Identities=70% Similarity=1.050 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+|+|||||||||+.+.|+-++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g 25 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLG 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99988999997999999999989
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.83 E-value=0.002 Score=35.84 Aligned_cols=23 Identities=43% Similarity=0.745 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..|+|||||||||+.+.|+-++.
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~g 27 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERFH 27 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999998999999999969
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.82 E-value=0.0034 Score=34.33 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=14.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999679999999439
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
....|.||||+|||||+..|...
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 59861179988899999999998
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.80 E-value=0.0022 Score=35.48 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..+|-|||||||||+.+.||-++.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.77 E-value=0.0034 Score=34.33 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.+++|.|||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989999999999999999997
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.76 E-value=0.038 Score=27.42 Aligned_cols=163 Identities=16% Similarity=0.048 Sum_probs=74.7
Q ss_pred EEECC-EEEEECCEEEEEECCCCCCHHHHHHHHCC--CCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHH
Q ss_conf 51020-35884781999964689946789964529--9889637999999590388231202166842489789999999
Q 000615 882 LLHSV-SGVFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVY 958 (1389)
Q Consensus 882 iL~~v-s~~i~~G~~~al~G~sGaGKTTLl~~Lag--~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~ 958 (1389)
-|+++ .|-+++|+++.|.|++|+|||+|..-++. ...++ .. ..|+.-+ .+..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~---~~----------------~~~~s~e------~~~~ 68 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFD---EP----------------GVFVTFE------ETPQ 68 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHC---CC----------------EEEEESS------SCHH
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---CC----------------CCCCCCC------CCHH
T ss_conf 798855689969839999947999999999999999998568---87----------------4201266------7999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHH--HCCCCCEEECCCC
Q ss_conf 9999888730599983999999999999982995543333469988788998-999999999996--3999720307999
Q 000615 959 ESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTE-QRKRLTIAVELV--ANPSIIFMDEPTS 1035 (1389)
Q Consensus 959 E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgG-qrkrl~Ia~~L~--~~p~illLDEPTs 1035 (1389)
+......... .+ . .+..+.............. ........ ....+.-....+ .+|++++.|--+.
T Consensus 69 ~~~~~~~~~~--~~--~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~ 136 (242)
T d1tf7a1 69 DIIKNARSFG--WD--L-------AKLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTS 136 (242)
T ss_dssp HHHHHHGGGT--CC--H-------HHHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTT
T ss_pred HHHHHHHHCC--CC--H-------HHHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 9999999849--98--4-------8988714302444210335-444430245899999999998863122200207889
Q ss_pred CC-----CHHHHHHHHHHHHHHHHCCCEEEEEECCCCH--------HHHHHHCEEEEEE
Q ss_conf 99-----9999999999999988499879999568519--------9998627188991
Q 000615 1036 GL-----DARAAAIVMRTVRNTVDTGRTVVCTIHQPSI--------DIFEAFDELLLLK 1081 (1389)
Q Consensus 1036 GL-----D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~--------~~~~~fD~illl~ 1081 (1389)
=. +......+.+.++...+.+.|++++.|.... .....+|.++.+.
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 137 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 98760572678999999999998639716884210255422246762335362999988
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.76 E-value=0.002 Score=35.86 Aligned_cols=23 Identities=43% Similarity=0.579 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+++|||||||||..+.|+-++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99987999998999999999869
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.0044 Score=33.57 Aligned_cols=28 Identities=29% Similarity=0.391 Sum_probs=19.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 5884781999964689946789964529
Q 000615 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 888 ~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
|-+++|.++-|.|++|+|||||+-.++.
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9966735899805777478999999999
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.74 E-value=0.0037 Score=34.06 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++|+|.+|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999999999999688
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.74 E-value=0.0025 Score=35.14 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
..++|.|++|+|||||.+.|+.+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.74 E-value=0.0033 Score=34.41 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.+|-||+|||||||.+.|+-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.74 E-value=0.0022 Score=35.50 Aligned_cols=23 Identities=43% Similarity=0.599 Sum_probs=18.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..|+|+|||||||+.+.||.++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~ 25 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLD 25 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99989999988999999999839
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0037 Score=34.02 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646899467899645299
Q 000615 896 TALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~ 916 (1389)
++|+|.+|+|||||+|.|.|.
T Consensus 8 I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 8 IAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEECSSSSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999979999899999999589
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.73 E-value=0.0028 Score=34.89 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=14.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+|+||||||||||.+.|+.+.+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99999999999999999997488
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.69 E-value=0.0029 Score=34.78 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-+-+.||+|+|||+|.++|+...
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHC
T ss_conf 48876689888359999999873
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.69 E-value=0.0032 Score=34.43 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
++|-.+.|.|++||||||+.+.|+.+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.68 E-value=0.0024 Score=35.26 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
..++|+|||||||+-+.||-++.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~Lg 27 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARALG 27 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89988999988999999999949
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.65 E-value=0.0023 Score=35.38 Aligned_cols=21 Identities=38% Similarity=0.605 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|+|++|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999899999899999999689
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0026 Score=35.10 Aligned_cols=24 Identities=54% Similarity=0.823 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999859999679999999439399
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
.++-||||+||||+.++|+..++.
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~ 61 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQT 61 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 898799997388999999850388
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.62 E-value=0.0026 Score=35.09 Aligned_cols=22 Identities=50% Similarity=0.803 Sum_probs=15.7
Q ss_pred EEECCCCCCHHHHHHHHHCCCC
Q ss_conf 9985999967999999943939
Q 000615 201 LLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 201 aIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.++|+|||||||+-+.||.++.
T Consensus 5 vliG~~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 5 VLVGLPGSGKSTIGRRLAKALG 26 (165)
T ss_dssp EEECSTTSSHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHC
T ss_conf 9988999988999999999849
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.61 E-value=0.0032 Score=34.50 Aligned_cols=23 Identities=39% Similarity=0.559 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-++|+|++|+|||||++.|.|++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.60 E-value=0.004 Score=33.82 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
-.+|+|+||+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0047 Score=33.38 Aligned_cols=24 Identities=42% Similarity=0.774 Sum_probs=15.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 819999646899467899645299
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
|-.++++|++++|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 989999899999899999999688
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.60 E-value=0.0024 Score=35.30 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+|+|+|++|||||+|+|+|..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999987999999996899
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.56 E-value=0.0035 Score=34.19 Aligned_cols=22 Identities=50% Similarity=0.821 Sum_probs=14.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.++-||||+|||++.++++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 6876699888308999999874
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.55 E-value=0.003 Score=34.61 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+|+|++|+|||||++.|.+..
T Consensus 16 I~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 16 LVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999989899999996788
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.54 E-value=0.0029 Score=34.74 Aligned_cols=23 Identities=61% Similarity=0.982 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+++-||||+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.54 E-value=0.0031 Score=34.60 Aligned_cols=26 Identities=27% Similarity=0.589 Sum_probs=21.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999679999999439399
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
++.+|.|+|||||||+.+.|+.++..
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999898998989999999999987
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.51 E-value=0.0034 Score=34.28 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
++||-|++|||||||.+.|+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~ 45 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQT 45 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9997898878999999999998
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.51 E-value=0.0039 Score=33.87 Aligned_cols=21 Identities=38% Similarity=0.518 Sum_probs=17.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|+||+|||||++.|.+.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999659
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.46 E-value=0.003 Score=34.61 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
++++.|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899991899839999999999
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0036 Score=34.16 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=26.1
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 35884781999964689946789964529
Q 000615 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 887 s~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.|-+++|+++.|.|++|+|||||..-++.
T Consensus 17 ~GGi~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 17 QGGIETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp TTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 58985997999995899999999999999
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.46 E-value=0.0046 Score=33.41 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|+|.||||||+++|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999907787099999999974
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.41 E-value=0.0049 Score=33.24 Aligned_cols=22 Identities=64% Similarity=0.937 Sum_probs=16.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.++.||||+||||+.++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.41 E-value=0.0047 Score=33.40 Aligned_cols=22 Identities=45% Similarity=0.552 Sum_probs=18.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+++|+||+|||||++.|.+..
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9999999999999999995899
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.39 E-value=0.0051 Score=33.13 Aligned_cols=22 Identities=36% Similarity=0.702 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
..+++|.|++|||||+|+|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.38 E-value=0.0053 Score=33.05 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+++|++|+|||||++.|.+..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHCCCC
T ss_conf 9999999989999999980899
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.37 E-value=0.0054 Score=33.00 Aligned_cols=23 Identities=43% Similarity=0.725 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
-.+++|+|++|||||++.|.|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998999998999999996888
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.0047 Score=33.38 Aligned_cols=24 Identities=21% Similarity=0.468 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
..+.|+||||+||+||++.|..+.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.31 E-value=0.0059 Score=32.74 Aligned_cols=24 Identities=25% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-.+|++|.+|+|||||++.|.|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.29 E-value=0.0053 Score=33.03 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=22.4
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 81999964689946789964529988
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
.+++.|.|++||||||+.+.|+.+..
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.28 E-value=0.0062 Score=32.58 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=15.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996799999994393
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
.++.++|.||+|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.25 E-value=0.0045 Score=33.51 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468994678996452998
Q 000615 896 TALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.|+||||||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9998999999899999999748
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.25 E-value=0.0051 Score=33.17 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-+||+|.+|+|||||+|.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.24 E-value=0.006 Score=32.67 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
..+|+|++.||||||+++|.+..
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~~ 29 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGSA 29 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 79999699854999999998236
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.24 E-value=0.0057 Score=32.84 Aligned_cols=21 Identities=48% Similarity=0.667 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|+||+|||||++.+.+.
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999679
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.23 E-value=0.0054 Score=32.96 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964689946789964529
Q 000615 894 VLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag 915 (1389)
+++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.23 E-value=0.005 Score=33.18 Aligned_cols=23 Identities=26% Similarity=0.595 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++|+|.+|+|||||+|.|.|+.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.17 E-value=0.0063 Score=32.54 Aligned_cols=21 Identities=29% Similarity=0.547 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|.||||||||++.|.+.
T Consensus 18 I~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 18 VIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999668
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.16 E-value=0.0059 Score=32.73 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++.|.|++||||||+.+.|+...
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 089998999999899999999980
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.15 E-value=0.0051 Score=33.11 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=31.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC
Q ss_conf 9999859999679999999439399998401999979607998767328995479
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH 253 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~ 253 (1389)
=.+++||+|+|||-|.+.||+.++- -=+..++...+ .+|||..+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V-----PFv~~daT~fT------eaGYvG~D 94 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA-----PFIKVEATKFT------EVGYVGKE 94 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEGGGGC----------CCCC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----CEEEEECCEEE------ECCEEECC
T ss_conf 4799899998899999999987389-----88986255114------11111044
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.0031 Score=34.59 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++|+|.+++|||||++.|.+.+
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.13 E-value=0.0067 Score=32.37 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
..+|+|++|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.09 E-value=0.0063 Score=32.52 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++++|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0077 Score=31.96 Aligned_cols=46 Identities=17% Similarity=0.292 Sum_probs=28.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCCC
Q ss_conf 999985999967999999943939999840199997960799876732899547998899
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHHG 258 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~D~h~~ 258 (1389)
+.+|-|++||||||+-+.|+-.+.... .. .....+..++++|.|.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~------------~~--~~~~~~~vi~~D~yy~~ 49 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE------------VD--YRQKQVVILSQDSFYRV 49 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG------------SC--GGGCSEEEEEGGGGBCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCHHC------------CC--CCCCCEEEEECCCCCCC
T ss_conf 999989997879999999999964101------------34--57884399934653224
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.08 E-value=0.0043 Score=33.60 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468994678996452998
Q 000615 896 TALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+||+|.+++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=95.08 E-value=0.0051 Score=33.13 Aligned_cols=28 Identities=43% Similarity=0.488 Sum_probs=19.4
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999967999999943939
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.++..++.||||+|||++.++|++.+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9767699989999888999999999859
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.05 E-value=0.0062 Score=32.58 Aligned_cols=22 Identities=18% Similarity=0.336 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
++||-|++||||||+.+.|+..
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~ 25 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQL 25 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899978799999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.04 E-value=0.0094 Score=31.41 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=12.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996799999994393
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
.|.+..+.|.|||||||+.+.|+-++
T Consensus 23 kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 23 RGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98699998999999899999999887
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.04 E-value=0.0089 Score=31.57 Aligned_cols=27 Identities=33% Similarity=0.389 Sum_probs=21.8
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 839999859999679999999439399
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
...++|.||||+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 881688898999899999999999754
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.01 E-value=0.0065 Score=32.44 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
-.+++|+|++|||||+|+|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998899998999999985898
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.98 E-value=0.006 Score=32.69 Aligned_cols=21 Identities=48% Similarity=0.623 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646899467899645299
Q 000615 896 TALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+.|+||||+|||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999999999999974
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.0046 Score=33.42 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999964689946789964529988
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
.++|+|++|||||||++.|.+...
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~~ 28 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDSV 28 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999999999889999999967999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.97 E-value=0.0038 Score=33.98 Aligned_cols=28 Identities=39% Similarity=0.380 Sum_probs=24.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8839999859999679999999439399
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
.|....+.|+|||||||+-+.|+-++..
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~ 45 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLVC 45 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 9969998899999999999999999974
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.006 Score=32.66 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=16.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 388399998599996799999994393
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
|.|.+.++-|+.||||||+.+.|+..+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.91 E-value=0.011 Score=31.03 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
++||.|++||||||+.+.|...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~l 103 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHH
T ss_conf 9999689999876899999999
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.88 E-value=0.0066 Score=32.40 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.+.|+|++||||||+.+.|+.+.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.88 E-value=0.0073 Score=32.11 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++|+|++|+|||||++.|.+.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~ 36 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDD 36 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999678
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=94.80 E-value=0.019 Score=29.43 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 8847819999646899467899645299
Q 000615 889 VFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 889 ~i~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
..+.| ...+.||+|+|||.|.+.|++.
T Consensus 120 ~~~~g-~~l~~G~pG~GKT~la~ala~~ 146 (321)
T d1w44a_ 120 RYASG-MVIVTGKGNSGKTPLVHALGEA 146 (321)
T ss_dssp EEESE-EEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCCC-EEEEECCCCCCHHHHHHHHHHH
T ss_conf 36886-3888779985088999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.78 E-value=0.032 Score=27.91 Aligned_cols=34 Identities=26% Similarity=0.243 Sum_probs=21.1
Q ss_pred EEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 75501778838839999859999679999999439
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 186 IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
.++. +...-.|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHG-VLLEVFGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEE-EEEEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEE-EEEEECCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 1789-999999999999818999989999999985
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.72 E-value=0.0091 Score=31.50 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+++|.|++||||||+.+.|+.+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~ 24 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDN 24 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 88999899998989999999999
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.70 E-value=0.0089 Score=31.56 Aligned_cols=25 Identities=28% Similarity=0.294 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3999985999967999999943939
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
-+.+|-|+.||||||+++.|+..++
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 1999889999888999999998707
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.68 E-value=0.033 Score=27.81 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9999999998999999998089
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.67 E-value=0.0069 Score=32.29 Aligned_cols=23 Identities=35% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+.+.|.|++|+|||||+..++..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~ 24 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 69999889997199999999999
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.66 E-value=0.0043 Score=33.63 Aligned_cols=25 Identities=40% Similarity=0.525 Sum_probs=22.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999679999999439399
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
=+++.||||+|||||.+.+++.+++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 0899889985299999999873798
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.66 E-value=0.01 Score=31.23 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++.|+||+||||||+.+.|+..
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
T ss_conf 48999899999889999999999
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=0.0082 Score=31.79 Aligned_cols=26 Identities=23% Similarity=0.189 Sum_probs=16.1
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 83999985999967999999943939
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+++.+|-|+.||||||+++.|+.++.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98899987888779999999999973
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.57 E-value=0.025 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=21.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 778838839999859999679999999439
Q 000615 191 SGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 191 Sg~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
+...-.|.=+++.|+||+|||||...|..+
T Consensus 8 ~~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 8 VLVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 999999999999808999989999999985
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.49 E-value=0.012 Score=30.69 Aligned_cols=22 Identities=55% Similarity=0.976 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.++-||||+||||+.++++.++
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.48 E-value=0.01 Score=31.11 Aligned_cols=29 Identities=34% Similarity=0.463 Sum_probs=25.6
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 35884781999964689946789964529
Q 000615 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 887 s~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.|-+++|+++-|.|++|+|||||..-++-
T Consensus 28 ~GGi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 28 GGGVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp TSSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79986996999983899988999999999
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.47 E-value=0.0079 Score=31.88 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=27.0
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 88388399998599996799999994393999
Q 000615 193 IVKPSRMTLLLGPPGAGKTTLMLALAGKLGKD 224 (1389)
Q Consensus 193 ~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~ 224 (1389)
.++.+.-.+|.||.||||||||++|.+..++.
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~ 193 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 193 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 99837888999403566257899986530145
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.01 Score=31.18 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 781999964689946789964529
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
..-.+||.|+.|||||||++.|+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~ 76 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGM 76 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 832897438999989999999999
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.43 E-value=0.012 Score=30.62 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 5 i~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998989999999719
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.01 Score=31.24 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=18.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.|.+.++-|+.||||||+.+.|+.++.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.41 E-value=0.012 Score=30.78 Aligned_cols=21 Identities=57% Similarity=0.716 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998999999999648
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.38 E-value=0.013 Score=30.41 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.++-||||+||||+.++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99988999870546999999972
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.31 E-value=0.015 Score=29.99 Aligned_cols=21 Identities=19% Similarity=0.629 Sum_probs=12.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|..+||||||+|+|.|.
T Consensus 27 ivVvG~~ssGKSSliNaLlG~ 47 (306)
T d1jwyb_ 27 IVVVGSQSSGKSSVLENIVGR 47 (306)
T ss_dssp EEEEECSSSSHHHHHHHHHTS
T ss_pred EEEEECCCCCHHHHHHHHHCC
T ss_conf 999818989799999999689
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=94.27 E-value=0.018 Score=29.63 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=17.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+++|++.+|||||+++|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCHHHHHHHHHHHH
T ss_conf 9999345884999999997034
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.26 E-value=0.013 Score=30.49 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=11.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 839999859999679999999439
Q 000615 197 SRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
+...+++||+|+||||.+-=||.+
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 779999899999889999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.23 E-value=0.014 Score=30.18 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=15.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++|+|.|.+|||||+|+|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 768899999899999999788
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.23 E-value=0.014 Score=30.24 Aligned_cols=26 Identities=42% Similarity=0.515 Sum_probs=22.5
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47819999646899467899645299
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
++|-.+.|+||.||||||+.+.|+.+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.019 Score=29.34 Aligned_cols=35 Identities=31% Similarity=0.506 Sum_probs=26.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECC
Q ss_conf 8839999859999679999999439399998401999979
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCG 235 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG 235 (1389)
|....+++||+|+|||.|.+.||-.+.. --|.+|.
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~l~~-----~~i~~d~ 85 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDM 85 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTC-----EEEEEEG
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHCCC-----CEEEECC
T ss_conf 7658999778750069999999863367-----7067415
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=94.21 E-value=0.0082 Score=31.79 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.++.||||+||||++++++..+.
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l~ 71 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRVS 71 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899678999899999999999987
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.19 E-value=0.014 Score=30.23 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.5
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 8199996468994678996452998
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-.++.|+||+||||||+.+.|+...
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.015 Score=30.06 Aligned_cols=23 Identities=48% Similarity=0.845 Sum_probs=17.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.++-||||+||||+.++++..+.
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l~ 60 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREIY 60 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
T ss_conf 99988998775589999999851
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.18 E-value=0.013 Score=30.39 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=25.8
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 35884781999964689946789964529
Q 000615 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 887 s~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.|-+++|+++.|.|++|+||||+..-++-
T Consensus 28 ~GGl~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 28 GGGLESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp TSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 79862885999991799998999999999
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.015 Score=30.00 Aligned_cols=21 Identities=38% Similarity=0.686 Sum_probs=16.8
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999996989999999709
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.18 E-value=0.018 Score=29.63 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=23.2
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCC--CCCCEEEEEEEECCCC
Q ss_conf 58847819999646899467899645299--8896379999995903
Q 000615 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGR--KTGGYIEGDIKISGYP 932 (1389)
Q Consensus 888 ~~i~~G~~~al~G~sGaGKTTLl~~Lag~--~~~g~~~G~i~i~g~~ 932 (1389)
+-++.|.++-+.|++|+|||||+-.++.. ..++. -++||...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~---~vyIDtE~ 98 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGV---AAFIDAEH 98 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCE---EEEEESSC
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCE---EEEEECCC
T ss_conf 986663369996488748899999999987548988---99998976
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.17 E-value=0.0031 Score=34.53 Aligned_cols=21 Identities=33% Similarity=0.656 Sum_probs=13.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|+|++|||||+++|.|.
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999999999999999589
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.14 E-value=0.015 Score=30.10 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999991989999999739
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.10 E-value=0.013 Score=30.53 Aligned_cols=23 Identities=39% Similarity=0.410 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.+.|.|++||||||+-+.|+-+.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.06 E-value=0.013 Score=30.47 Aligned_cols=23 Identities=35% Similarity=0.364 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-+||+|...||||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.06 E-value=0.0079 Score=31.89 Aligned_cols=40 Identities=18% Similarity=0.328 Sum_probs=29.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99998599996799999994393999984019999796079987673289954799889
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~D~h~ 257 (1389)
+.+|-|+|||||||+.++|...+... .-.++.++|+|.|-
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~-------------------~v~~~iI~~Dsfyr 45 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE-------------------GVKAVSIEGDAFHR 45 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH-------------------TCCEEEEEGGGGBS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------------------CCCEEEEECCCCCC
T ss_conf 99998999780999999999997156-------------------99769994777875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.03 E-value=0.018 Score=29.54 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996799999994
Q 000615 199 MTLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~La 218 (1389)
+.+|.|++||||||+.+.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.03 E-value=0.015 Score=30.02 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.+||.||+||||||+.+.|+...
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.00 E-value=0.012 Score=30.60 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1999964689946789964529988
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
..+.|.||+|+|||||.+.|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.00 E-value=0.035 Score=27.67 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=23.8
Q ss_pred EEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 75501778838839999859999679999999439
Q 000615 186 ILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 186 IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
-|+. +.....|.=+++.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.97 E-value=0.016 Score=29.96 Aligned_cols=38 Identities=24% Similarity=0.403 Sum_probs=26.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEEC
Q ss_conf 78199996468994678996452998-896379999995
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIKIS 929 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~-~~g~~~G~i~i~ 929 (1389)
..-.+||.|+.|||||||++.|.... ..|.--+-+.+|
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavD 88 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 88 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 815986117998889999999999876368751344346
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.019 Score=29.33 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=12.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+++|++|+|||||++.+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999198999999961
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.91 E-value=0.025 Score=28.65 Aligned_cols=28 Identities=32% Similarity=0.459 Sum_probs=15.8
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 5884781999964689946789964529
Q 000615 888 GVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 888 ~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
|-++.|.++-+-|++|+|||||...++.
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~ 79 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVA 79 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9866754789805876522799999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.86 E-value=0.017 Score=29.65 Aligned_cols=26 Identities=42% Similarity=0.506 Sum_probs=23.0
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47819999646899467899645299
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+.|.+++|-|+.||||||+.+.|+..
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~ 26 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEA 26 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 98059999899888999999999999
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.86 E-value=0.014 Score=30.21 Aligned_cols=25 Identities=28% Similarity=0.340 Sum_probs=20.7
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
|+.-+.++||+|+|||.|.++||..
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~ 72 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKL 72 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 9866999899998888999998621
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.85 E-value=0.019 Score=29.34 Aligned_cols=20 Identities=15% Similarity=0.414 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+++|++|+|||||++.+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899598999999982
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.85 E-value=0.019 Score=29.35 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47819999646899467899645299
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+.|.++-+.|.||||||||.+.|+.+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.84 E-value=0.014 Score=30.17 Aligned_cols=22 Identities=18% Similarity=0.373 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+||+||||||+.+.|+.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999889999989999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.83 E-value=0.018 Score=29.48 Aligned_cols=21 Identities=29% Similarity=0.634 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999829
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.82 E-value=0.018 Score=29.49 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++.++|.+|+|||||.+.|+..
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999899999999999999999
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.80 E-value=0.02 Score=29.19 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 781999964689946789964529
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.-+++-++|++||||||+.+-|+.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 998999989999989999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.80 E-value=0.016 Score=29.94 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468994678996452998
Q 000615 896 TALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.|+|++||||||+.+.||.+.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.79 E-value=0.021 Score=29.08 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-+++|-|+.||||||+++.|+...
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199988999988899999999870
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.78 E-value=0.016 Score=29.85 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=19.7
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 9972030799999999999999999998849987999956851
Q 000615 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1067 (1389)
Q Consensus 1025 p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps 1067 (1389)
.+++++||.-. |...+...+.+.+.... ....++++++.++
T Consensus 132 ~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~ 172 (252)
T d1sxje2 132 YKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMS 172 (252)
T ss_dssp CEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSC
T ss_pred CEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCC
T ss_conf 24999424333-45431112210022135-6643000102111
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.014 Score=30.30 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++|+|++|+|||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.029 Score=28.24 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=16.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.|.+.++=|+-||||||+.+.|+-++.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.019 Score=29.36 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=17.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997998999999999809
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.021 Score=29.13 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 781999964689946789964529988
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
.+.+++|-|+.||||||+++.|+....
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.72 E-value=0.029 Score=28.24 Aligned_cols=22 Identities=45% Similarity=0.758 Sum_probs=15.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+++|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998989939999999981885
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.72 E-value=0.019 Score=29.45 Aligned_cols=24 Identities=38% Similarity=0.422 Sum_probs=12.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996799999994393
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+.+++||+|+||||.+--||.++
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 689998999998899999999999
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.68 E-value=0.016 Score=29.84 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++|+|.+|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.027 Score=28.41 Aligned_cols=21 Identities=38% Similarity=0.621 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999849
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.67 E-value=0.019 Score=29.44 Aligned_cols=28 Identities=36% Similarity=0.536 Sum_probs=24.2
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 3588478199996468994678996452
Q 000615 887 SGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 887 s~~i~~G~~~al~G~sGaGKTTLl~~La 914 (1389)
.|-+++|+++.|.|++|+|||||.--++
T Consensus 30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 30 GGGIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 6995588799998589898899999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.67 E-value=0.015 Score=30.12 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+|++|+|||||++.|.+.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999659
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.021 Score=29.17 Aligned_cols=21 Identities=33% Similarity=0.738 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999993999999999629
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.58 E-value=0.014 Score=30.23 Aligned_cols=26 Identities=19% Similarity=0.383 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 47819999646899467899645299
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+.+.++.|+||+||||||+.+.|+.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 67828999899999879999999998
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.54 E-value=0.024 Score=28.75 Aligned_cols=22 Identities=23% Similarity=0.517 Sum_probs=14.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
..+|+|.-+||||||+|+|.|.
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~ 49 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 6999768989799999999689
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.53 E-value=0.022 Score=28.98 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=16.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|++|+|||||++.+.+.
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990989999999619
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=0.03 Score=28.09 Aligned_cols=31 Identities=32% Similarity=0.480 Sum_probs=27.4
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7883883999985999967999999943939
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
|-+++|++|.+.||||||||||+..++....
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 9966735899805777478999999999987
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.49 E-value=0.021 Score=29.18 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=72.1
Q ss_pred CEEEEECCEEEEEECCCCCCHHHHHHHHCCCC-CCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf 03588478199996468994678996452998-89637999999590388231202166842489789999999999988
Q 000615 886 VSGVFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYS 964 (1389)
Q Consensus 886 vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~-~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~ 964 (1389)
+.|-+++|.++.|.|++|+|||||+.-++... ..+.. ..|+.-+ .+..+.....
T Consensus 19 l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~-------------------~~~is~e------~~~~~~~~~~ 73 (242)
T d1tf7a2 19 CGGGFFKDSIILATGATGTGKTLLVSRFVENACANKER-------------------AILFAYE------ESRAQLLRNA 73 (242)
T ss_dssp TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCC-------------------EEEEESS------SCHHHHHHHH
T ss_pred HCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC-------------------CCEEECC------CCHHHHHHHH
T ss_conf 56898698499999189999999999999999872324-------------------4112126------7999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCCCEEECCCC---CCCHH
Q ss_conf 87305999839999999999999829955433334699887889989999999999-963999720307999---99999
Q 000615 965 AWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVE-LVANPSIIFMDEPTS---GLDAR 1040 (1389)
Q Consensus 965 a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~-L~~~p~illLDEPTs---GLD~~ 1040 (1389)
.. ...+ .. +. ...+.....+... ......+.- -.|... --.+|++++.|--+. +.+..
T Consensus 74 ~~--~~~~--~~-------~~-~~~~~~~~~~~~~-----~~~~~~~~~-~~i~~~i~~~~~~~vviDs~~~~~~~~~~~ 135 (242)
T d1tf7a2 74 YS--WGMD--FE-------EM-ERQNLLKIVCAYP-----ESAGLEDHL-QIIKSEINDFKPARIAIDSLSALARGVSNN 135 (242)
T ss_dssp HT--TSCC--HH-------HH-HHTTSEEECCCCG-----GGSCHHHHH-HHHHHHHHTTCCSEEEEECHHHHTSSSCHH
T ss_pred HH--CCCC--HH-------HH-HHCCCEEEEEEEC-----CHHHHHHHH-HHHHHHHHHCCCCEEEEECCHHHHCCCCHH
T ss_conf 98--2998--69-------98-5458617997300-----010179999-999999984088533220431430489999
Q ss_pred HHHHHHHHHHHHH-HCCCEEEEEECCCC---------HHHHHHHCEEEEEE
Q ss_conf 9999999999988-49987999956851---------99998627188991
Q 000615 1041 AAAIVMRTVRNTV-DTGRTVVCTIHQPS---------IDIFEAFDELLLLK 1081 (1389)
Q Consensus 1041 ~~~~i~~~l~~~~-~~g~tvi~t~Hqps---------~~~~~~fD~illl~ 1081 (1389)
.....+..+.+++ +.+.+++++.|... ..+....|.++.+.
T Consensus 136 ~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 136 AFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 999999999999998698399998567512554457764046421699999
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.49 E-value=0.015 Score=30.11 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-++|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999998989999999809
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.47 E-value=0.024 Score=28.78 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+|+|.+|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999198999999971
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.42 E-value=0.02 Score=29.28 Aligned_cols=22 Identities=32% Similarity=0.366 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468994678996452998
Q 000615 896 TALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.|+|++||||||+-+.||.+.
T Consensus 5 Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 5 IFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999994
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.41 E-value=0.031 Score=28.05 Aligned_cols=21 Identities=43% Similarity=0.596 Sum_probs=10.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
+++++||+|+||||.+-=||.
T Consensus 13 vi~lvGptGvGKTTTiAKLAa 33 (213)
T d1vmaa2 13 VIMVVGVNGTGKTTSCGKLAK 33 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999988999999999
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.022 Score=28.95 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++++|++|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.023 Score=28.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+||+||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999799999989999999998
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.39 E-value=0.023 Score=28.88 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.4
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++.|.|++||||||+.+.|+.+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L 25 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998989989899999999999
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.36 E-value=0.02 Score=29.24 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.3
Q ss_pred EEEEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 35884781999964689946789964529
Q 000615 887 SGVFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 887 s~~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.|-+++|.++.|.|++|+|||+|...++.
T Consensus 31 gGGip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 31 GGGIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp TSSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 69976897999988998878899999999
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.031 Score=28.04 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=26.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 99998599996799999994393999984019999796079987673289954799889
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQHDLHH 257 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~D~h~ 257 (1389)
+.+|-|++|||||||...|.-.+... . .....++.++.+|.+.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~---~-------------~~~~~v~~iS~DdfY~ 71 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEK---Y-------------GGEKSIGYASIDDFYL 71 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH---H-------------GGGSCEEEEEGGGGBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHH---H-------------CCCCCEEEECCCCCCC
T ss_conf 99837998788999999999999987---2-------------7786067635677778
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.025 Score=28.65 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=15.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++|+|.+|+|||||++.+.+.
T Consensus 8 i~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999739
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.025 Score=28.60 Aligned_cols=21 Identities=33% Similarity=0.768 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990889999999719
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.33 E-value=0.027 Score=28.41 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993999999999719
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.025 Score=28.60 Aligned_cols=21 Identities=33% Similarity=0.695 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996789999999868
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.30 E-value=0.024 Score=28.73 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989887789999999998
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.23 E-value=0.03 Score=28.09 Aligned_cols=21 Identities=29% Similarity=0.577 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997989999999709
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.22 E-value=0.028 Score=28.29 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 1999964689946789964529988
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
-.++++|.+|+|||||++.|.+...
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~~ 40 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNEV 40 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSC
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7999999999898999999966888
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.027 Score=28.41 Aligned_cols=20 Identities=25% Similarity=0.471 Sum_probs=12.6
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+|+|++|+|||||++.+.+
T Consensus 7 v~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 7 IAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899298999999971
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.029 Score=28.18 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999729
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.13 E-value=0.024 Score=28.79 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468994678996452998
Q 000615 896 TALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.|+|++||||||+-+.|+.+.
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 8998899998899999999984
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.08 Score=25.31 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++++|.+|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.08 E-value=0.042 Score=27.16 Aligned_cols=28 Identities=39% Similarity=0.508 Sum_probs=19.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 3883999985999967999999943939
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+||.+.+|-|+=|||||||.+.++..+.
T Consensus 31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 9982999966877658899999876422
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.04 E-value=0.023 Score=28.87 Aligned_cols=21 Identities=43% Similarity=0.559 Sum_probs=11.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
+++++||+|+||||.+-=||.
T Consensus 14 vi~lvGptGvGKTTTiAKLA~ 34 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAY 34 (211)
T ss_dssp EEEEECSCCC----HHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989999998999999999
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.028 Score=28.34 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=16.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990999999999709
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.01 E-value=0.015 Score=30.06 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
++||.|+|||||||+.+.|..
T Consensus 6 IIgIaG~SGSGKTTva~~l~~ 26 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQ 26 (288)
T ss_dssp EEEEESCC---CCTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999989997809999999999
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.043 Score=27.08 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=16.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+++|.+|+|||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 9999989929999999997286
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.99 E-value=0.022 Score=29.00 Aligned_cols=26 Identities=35% Similarity=0.626 Sum_probs=21.6
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 847819999646899467899645299
Q 000615 890 FRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 890 i~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+|+. .+||+|..+||||||++.|.+.
T Consensus 3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 3 IRSP-IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8998-7999969985499999999823
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.96 E-value=0.022 Score=28.96 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
-+.|+|.|.+|||||+++|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 7999789999899999999778
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.96 E-value=0.031 Score=28.02 Aligned_cols=21 Identities=38% Similarity=0.294 Sum_probs=15.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|+++||||||++.|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHH
T ss_conf 999947898499999999998
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.92 E-value=0.058 Score=26.23 Aligned_cols=24 Identities=42% Similarity=0.389 Sum_probs=20.2
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 819999646899467899645299
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
..++.++||+|+||||.+-=||.+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 868999899999889999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.90 E-value=0.033 Score=27.85 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+..++++||+|+||||.+-=||.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~ 29 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRY 29 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9779999899999889999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.89 E-value=0.034 Score=27.71 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
+++|+||.++|||||||.|.|.
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHCCC
T ss_conf 9998899999799999998099
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.89 E-value=0.02 Score=29.25 Aligned_cols=20 Identities=50% Similarity=0.698 Sum_probs=14.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+++|++|+|||||++.+.+
T Consensus 20 I~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999988733
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=92.83 E-value=0.079 Score=25.36 Aligned_cols=22 Identities=36% Similarity=0.552 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|++|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.79 E-value=0.027 Score=28.41 Aligned_cols=24 Identities=38% Similarity=0.569 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+.+|-|+.||||||+++.|+.++.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.74 E-value=0.029 Score=28.20 Aligned_cols=21 Identities=38% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646899467899645299
Q 000615 896 TALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+.|+|++||||||+.+.|+..
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999889999989999999998
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.66 E-value=0.043 Score=27.08 Aligned_cols=20 Identities=35% Similarity=0.657 Sum_probs=12.1
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996468994678996452
Q 000615 895 LTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~La 914 (1389)
++||.|..||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=92.65 E-value=0.063 Score=25.99 Aligned_cols=19 Identities=53% Similarity=0.679 Sum_probs=11.3
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599996799999994
Q 000615 200 TLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~La 218 (1389)
.+|+|+.|||||||..+|.
T Consensus 5 v~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 5 VALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9999488980999999999
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.64 E-value=0.021 Score=29.12 Aligned_cols=20 Identities=35% Similarity=0.710 Sum_probs=13.3
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+++|.+|+|||||++.|.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999499999999970
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.63 E-value=0.037 Score=27.48 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=15.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++++|.+|+|||||++.+.+.
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999992989999999739
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.038 Score=27.41 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++|+|.+|+|||||++.+.+.
T Consensus 8 ivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 8 CVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999997999999999749
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.62 E-value=0.067 Score=25.82 Aligned_cols=34 Identities=32% Similarity=0.273 Sum_probs=26.2
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 51020358847819999646899467899645299
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 882 iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++.....+ .|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf 178999999-9999999818999989999999985
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.60 E-value=0.036 Score=27.56 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=23.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 781999964689946789964529988
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
.|.++++-|+.||||||+.+.|+.+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 768999989988869999999999997
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=92.59 E-value=0.046 Score=26.91 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=12.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996799999994
Q 000615 199 MTLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~La 218 (1389)
+.+|.|++||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988688999999999
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.57 E-value=0.036 Score=27.55 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=21.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+..+.|.|++|+|||||++.++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 5987999869998299999999997
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.56 E-value=0.024 Score=28.72 Aligned_cols=21 Identities=43% Similarity=0.553 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|+||+|||||++.+.+.
T Consensus 15 IvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999999998789999998448
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.51 E-value=0.0079 Score=31.91 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++|+|.+++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.037 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998990989999999849
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=92.50 E-value=0.065 Score=25.89 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
-+.|+|-|.+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 4888899999889999999779
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.44 E-value=0.037 Score=27.49 Aligned_cols=23 Identities=39% Similarity=0.496 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+++|.||+||||+|+-+.|+.+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.44 E-value=0.037 Score=27.48 Aligned_cols=22 Identities=41% Similarity=0.592 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+|+.||||||+.+.|+.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEK 23 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999879999999998
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.39 E-value=0.042 Score=27.14 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
..-|.||+|+||||+.++|+...
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998799998889999999998
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.39 E-value=0.04 Score=27.29 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=22.4
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.|.++++-|+.||||||+.+.|+.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~ 25 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVET 25 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9878999899888799999999999
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.38 E-value=0.057 Score=26.26 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=25.7
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 788388399998599996799999994393
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
|=++.|++|.+.||||+|||||+..++...
T Consensus 55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 55 GGLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SSBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 986663369996488748899999999987
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.36 E-value=0.042 Score=27.12 Aligned_cols=20 Identities=40% Similarity=0.582 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
++|+|.+|+|||||++.+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999398999999982
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.36 E-value=0.037 Score=27.47 Aligned_cols=22 Identities=50% Similarity=0.638 Sum_probs=14.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
+++|-|.-||||||||+-|...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.33 E-value=0.039 Score=27.38 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++|+|.+|+|||||++.+.+.
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998993889999999719
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.30 E-value=0.042 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
++||-|+.|||||||.+.|..
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 998379987889999999999
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.29 E-value=0.061 Score=26.10 Aligned_cols=34 Identities=32% Similarity=0.278 Sum_probs=25.5
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 51020358847819999646899467899645299
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 882 iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++.. ...-.|.-+.|.|+||+|||||...|..+
T Consensus 4 ~lH~~-~v~~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 4 SMHGV-LVDIYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEE-EEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEE-EEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 28999-99999999999808999989999999985
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.25 E-value=0.045 Score=26.97 Aligned_cols=21 Identities=29% Similarity=0.581 Sum_probs=17.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++|+|++|+|||||++.+.+.
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999739
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.21 E-value=0.042 Score=27.16 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=14.7
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|.+|+|||||++.+.+.
T Consensus 9 v~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999997996989999999739
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.19 E-value=0.048 Score=26.79 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=13.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 399998599996799999994393
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
.+.+++||+|+||||.+-=||.++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 799998999999899999999999
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.17 E-value=0.052 Score=26.53 Aligned_cols=29 Identities=34% Similarity=0.625 Sum_probs=23.8
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 38839999859999679999999439399
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
.|+=+.++-||.||||||+|.++...++.
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.086 Score=25.12 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=14.1
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998997899999999719
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=92.08 E-value=0.032 Score=27.89 Aligned_cols=17 Identities=35% Similarity=0.608 Sum_probs=14.0
Q ss_pred EEEECCCCCCHHHHHHH
Q ss_conf 99985999967999999
Q 000615 200 TLLLGPPGAGKTTLMLA 216 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~ 216 (1389)
++|.|+|||||||.|-.
T Consensus 17 ~lI~g~aGTGKTt~l~~ 33 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITN 33 (306)
T ss_dssp EEECCCTTSCHHHHHHH
T ss_pred EEEEEECCCCHHHHHHH
T ss_conf 89996288438999999
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.08 E-value=0.027 Score=28.41 Aligned_cols=23 Identities=43% Similarity=0.621 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++++|++|+|||||++.+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.05 E-value=0.083 Score=25.21 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
=.+++|+..+|||||++.|.|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.05 E-value=0.062 Score=26.04 Aligned_cols=36 Identities=39% Similarity=0.706 Sum_probs=27.4
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 155102035884781999964689946789964529988
Q 000615 880 LQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 880 ~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
..+|+.++. |=.+++++|+-++|||||||.|.|...
T Consensus 22 l~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~~ 57 (277)
T d1f5na2 22 LKILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKKK 57 (277)
T ss_dssp HHHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCSS
T ss_pred HHHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999970799---879999889999979999999809987
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.05 E-value=0.05 Score=26.66 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999991989999999729
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.02 E-value=0.051 Score=26.62 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
+.|-||+|+|||-|+.+++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998889983999999999874
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.99 E-value=0.049 Score=26.72 Aligned_cols=20 Identities=35% Similarity=0.718 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+++|++|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999299999999971
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.97 E-value=0.041 Score=27.21 Aligned_cols=22 Identities=41% Similarity=0.459 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+|++||||||+.+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999889999979999999999
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.97 E-value=0.05 Score=26.63 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=15.6
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|.+|+|||||++.+...
T Consensus 7 i~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998994999999999739
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.93 E-value=0.044 Score=27.01 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+|+.||||||..+.|+-+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.88 E-value=0.053 Score=26.47 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=15.1
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
.+|+|.+|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999899588999999972
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=91.85 E-value=0.066 Score=25.88 Aligned_cols=31 Identities=39% Similarity=0.598 Sum_probs=27.6
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7883883999985999967999999943939
Q 000615 192 GIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 192 g~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
|=++.|++|.+-||+|||||||...++....
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9866754789805876522799999999997
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.84 E-value=0.037 Score=27.48 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999198999999973
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=91.83 E-value=0.052 Score=26.54 Aligned_cols=20 Identities=35% Similarity=0.438 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996799999994
Q 000615 199 MTLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~La 218 (1389)
+.+|.|++||||||+.+.|.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.80 E-value=0.056 Score=26.33 Aligned_cols=27 Identities=33% Similarity=0.407 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
+-...+++||+|+||||.+--||.++.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999988999999999999
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.031 Score=28.04 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=9.6
Q ss_pred EEEECCCCCCHHHHHHHHCC
Q ss_conf 99964689946789964529
Q 000615 896 TALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag 915 (1389)
++++|.+|+|||||++.+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 99999999088999999984
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=91.76 E-value=0.038 Score=27.40 Aligned_cols=28 Identities=18% Similarity=0.377 Sum_probs=19.0
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHH
Q ss_conf 5167550177883883999985999967999999
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLA 216 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~ 216 (1389)
+..++++. .|. ++|.|+|||||||.|-.
T Consensus 16 Q~~~v~~~-----~g~-~lV~g~aGSGKTt~l~~ 43 (318)
T d1pjra1 16 QQEAVRTT-----EGP-LLIMAGAGSGKTRVLTH 43 (318)
T ss_dssp HHHHHHCC-----SSC-EEEEECTTSCHHHHHHH
T ss_pred HHHHHHCC-----CCC-EEEEECCCCCHHHHHHH
T ss_conf 99998299-----999-89995298668999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=91.70 E-value=0.063 Score=26.01 Aligned_cols=19 Identities=42% Similarity=0.784 Sum_probs=11.7
Q ss_pred CEEEEEECCCCCCHHHHHH
Q ss_conf 8399998599996799999
Q 000615 197 SRMTLLLGPPGAGKTTLML 215 (1389)
Q Consensus 197 G~ltaIlGpsGSGKSTLL~ 215 (1389)
+.+++|-||||+||||++.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp BSEEEEECCTTSTHHHHHH
T ss_pred CCEEEEECCCCCCCEEHHH
T ss_conf 8859997689887521699
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.70 E-value=0.046 Score=26.88 Aligned_cols=22 Identities=18% Similarity=0.264 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+||+|...+|||||+++|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred CEEEECCCCCCHHHHHHHHHCC
T ss_conf 1768899999899999999788
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.62 E-value=0.057 Score=26.30 Aligned_cols=21 Identities=33% Similarity=0.593 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999994989999999859
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.58 E-value=0.059 Score=26.18 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999998995989999999709
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.56 E-value=0.06 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=9.0
Q ss_pred EEEEECCCCCCHHHHHHHH
Q ss_conf 9999646899467899645
Q 000615 895 LTALMGVSGAGKTTLMDVL 913 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~L 913 (1389)
.+.|+|.+|+|||||++-+
T Consensus 8 KilllG~~~vGKTsll~~~ 26 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQM 26 (221)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
T ss_conf 7999989999889999989
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.54 E-value=0.049 Score=26.71 Aligned_cols=22 Identities=41% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9996468994678996452998
Q 000615 896 TALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.-+.||+|+||||+.++|+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~ 59 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASEL 59 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHCC
T ss_conf 8987999973889999998503
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.54 E-value=0.049 Score=26.72 Aligned_cols=22 Identities=36% Similarity=0.359 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
..-|.||+|+||||+.++++..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 6999789997487999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.51 E-value=0.072 Score=25.61 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=13.3
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996468994678996452
Q 000615 895 LTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~La 914 (1389)
-+||+|..|||||||...|.
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.50 E-value=0.05 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.+.|+|+.||||||+-+.|+.+.
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 69998899998799999999997
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=91.44 E-value=0.062 Score=26.04 Aligned_cols=23 Identities=39% Similarity=0.544 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999679999999439
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
+-++|+|++|||||++++.+.-.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHH
T ss_conf 65899907999689999999999
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.43 E-value=0.054 Score=26.41 Aligned_cols=27 Identities=30% Similarity=0.267 Sum_probs=22.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.-.+.+++||+|+||||.+-=||.++.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998999989999998999999999999
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.35 E-value=0.056 Score=26.36 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999887338
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.31 E-value=0.051 Score=26.62 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.27 E-value=0.047 Score=26.80 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=18.6
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+|+||||.|||++...|+.+..
T Consensus 42 ~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 42 PLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
T ss_conf 67988898867799999999998
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.21 E-value=0.088 Score=25.03 Aligned_cols=34 Identities=35% Similarity=0.248 Sum_probs=25.9
Q ss_pred EEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 51020358847819999646899467899645299
Q 000615 882 LLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 882 iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-++. +...-.|.-+.|.|+||+|||||...|..+
T Consensus 5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 4889-999999999999808999999999999984
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.20 E-value=0.045 Score=26.95 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.071 Score=25.64 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 7819999646899467899645299
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
|...+.++||+|+|||.|.+.||..
T Consensus 51 p~~~~lf~Gp~GvGKT~lak~la~~ 75 (315)
T d1r6bx3 51 PVGSFLFAGPTGVGKTEVTVQLSKA 75 (315)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7658999778750069999999863
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.18 E-value=0.069 Score=25.72 Aligned_cols=17 Identities=41% Similarity=0.720 Sum_probs=8.9
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 99859999679999999
Q 000615 201 LLLGPPGAGKTTLMLAL 217 (1389)
Q Consensus 201 aIlGpsGSGKSTLL~~L 217 (1389)
+++|.+|+|||||++-+
T Consensus 6 vllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 6 LLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
T ss_conf 99989999989999988
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.063 Score=26.01 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.07 E-value=0.069 Score=25.72 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=19.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+++++||+|+||||.+-=||.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999989999999999
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.069 Score=25.73 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=17.2
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+|+|.+|+|||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999998999999999649
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.03 E-value=0.075 Score=25.49 Aligned_cols=26 Identities=35% Similarity=0.378 Sum_probs=23.8
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 84781999964689946789964529
Q 000615 890 FRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 890 i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+||.++.|-|+=||||||+.+.++.
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~ 55 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 79982999966877658899999876
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.02 E-value=0.07 Score=25.71 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.01 E-value=0.072 Score=25.61 Aligned_cols=23 Identities=30% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++++|.-.||||||+++|.|..
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.95 E-value=0.07 Score=25.70 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=15.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++|+|.+|+|||||++.+.+.
T Consensus 6 vvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999996999999999719
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.90 E-value=0.075 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++++|.-.||||||+++|.|..
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.87 E-value=0.062 Score=26.03 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+|+.||||||+.+.|+.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 9999899999989999999999
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.074 Score=25.55 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.++++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=90.84 E-value=0.091 Score=24.95 Aligned_cols=27 Identities=48% Similarity=0.740 Sum_probs=22.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 388399998599996799999994393
Q 000615 195 KPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
+|....+++||+|+|||.+.+.||-.+
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.81 E-value=0.17 Score=23.21 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99998599996799999994
Q 000615 199 MTLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~La 218 (1389)
=++++|.+|+|||||++-+.
T Consensus 8 KilllG~~~vGKTsll~~~~ 27 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMR 27 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 79999899998899999895
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.75 E-value=0.077 Score=25.41 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
++||.|..||||||..+.|..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.75 E-value=0.056 Score=26.34 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999982
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.71 E-value=0.091 Score=24.95 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.4
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 884781999964689946789964529
Q 000615 889 VFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 889 ~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
-+-.|+..+|.|++|+|||||+..++.
T Consensus 39 PigrGQr~~I~g~~g~GKT~l~~~i~~ 65 (289)
T d1xpua3 39 PIGRGQRGLIVAPPKAGKTMLLQNIAQ 65 (289)
T ss_dssp CCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 645787556867999887899999999
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.62 E-value=0.058 Score=26.22 Aligned_cols=22 Identities=36% Similarity=0.626 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++.+.+.
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.61 E-value=0.075 Score=25.48 Aligned_cols=28 Identities=32% Similarity=0.590 Sum_probs=24.5
Q ss_pred EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 8388399998599996799999994393
Q 000615 194 VKPSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 194 i~pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
+-.|+-.+|.|++|+|||||+..++...
T Consensus 40 igrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 40 IGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4578755686799988789999999977
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.51 E-value=0.074 Score=25.53 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964689946789964529
Q 000615 894 VLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag 915 (1389)
-.++|+|.+|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 3899999899298999999971
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.49 E-value=0.071 Score=25.67 Aligned_cols=23 Identities=30% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
=+.++||+|+|||-|.+.||+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l 73 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLA 73 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 47998999988999999999873
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.085 Score=25.14 Aligned_cols=21 Identities=29% Similarity=0.561 Sum_probs=14.9
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|.+|+|||||++.+.+.
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHCC
T ss_conf 999998998999999999709
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=90.44 E-value=0.097 Score=24.76 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999859999679999999439
Q 000615 199 MTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
=.+++|++.+|||||+++|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.44 E-value=0.08 Score=25.30 Aligned_cols=23 Identities=52% Similarity=0.762 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+++|-|.-||||||+++.|..+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.087 Score=25.07 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=20.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 39999859999679999999439399
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
++.++=|+-||||||+++.|+-.+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.42 E-value=0.076 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=90.37 E-value=0.082 Score=25.24 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-+.|.||+|+|||++.+.||..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 7998896999889999998620
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.29 E-value=0.2 Score=22.71 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-.++++|.+|+|||||++-+.+.
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 79999998997899999999719
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.28 E-value=0.08 Score=25.31 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-+|++|.-.+|||||++.|.|.
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~ 28 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGV 28 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999934588499999999703
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.081 Score=25.28 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++|+|||||++.+.+.
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999990889999999849
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=90.24 E-value=0.077 Score=25.44 Aligned_cols=21 Identities=48% Similarity=0.632 Sum_probs=18.8
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646899467899645299
Q 000615 896 TALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~ 916 (1389)
+-+.||+|.||||+.+++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~ 58 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHE 58 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 898897998788899999998
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.19 E-value=0.093 Score=24.90 Aligned_cols=22 Identities=41% Similarity=0.718 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.++|.+|+|||||++.+.+.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~ 26 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGV 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998992999999999728
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.11 E-value=0.084 Score=25.19 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.09 E-value=0.081 Score=25.29 Aligned_cols=20 Identities=50% Similarity=0.732 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996468994678996452
Q 000615 895 LTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~La 914 (1389)
-+||+|..|+|||||...|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999488980999999999
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.07 E-value=0.09 Score=24.99 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.++|.+|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.00 E-value=0.1 Score=24.62 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++-+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.97 E-value=0.087 Score=25.07 Aligned_cols=21 Identities=33% Similarity=0.477 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|..|+|||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999098999999961
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.93 E-value=0.14 Score=23.66 Aligned_cols=27 Identities=37% Similarity=0.447 Sum_probs=22.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+--.+|+|-|-+|||||+|+|.|+..
T Consensus 111 ~~~~v~vvG~PNvGKSsliN~L~~~~~ 137 (273)
T d1puja_ 111 RAIRALIIGIPNVGKSTLINRLAKKNI 137 (273)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCE
T ss_conf 752789986675443555425426615
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.91 E-value=0.08 Score=25.32 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.89 E-value=0.069 Score=25.75 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.84 E-value=0.1 Score=24.61 Aligned_cols=21 Identities=29% Similarity=0.514 Sum_probs=17.0
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
++++|.+|+|||||++.+...
T Consensus 5 ivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHC
T ss_conf 999999995989999999729
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.70 E-value=0.09 Score=24.98 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHCCC
Q ss_conf 999646899467899645299
Q 000615 896 TALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.-|.||+|+||||+.++++..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999899999849999999999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=89.57 E-value=0.088 Score=25.05 Aligned_cols=21 Identities=29% Similarity=0.153 Sum_probs=18.4
Q ss_pred EEEEEECCCCCCHHHHHHHHH
Q ss_conf 399998599996799999994
Q 000615 198 RMTLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~La 218 (1389)
|-.+|+|+.|||||||..+|.
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHH
T ss_conf 299999589899899999999
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.56 E-value=0.075 Score=25.49 Aligned_cols=23 Identities=22% Similarity=0.515 Sum_probs=20.5
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-.+||+|-..+|||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 37999789999899999999778
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.51 E-value=0.082 Score=25.26 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899088999999971
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.48 E-value=0.07 Score=25.71 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.++|..|+|||||++.|.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=89.45 E-value=0.12 Score=24.14 Aligned_cols=22 Identities=36% Similarity=0.453 Sum_probs=18.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCC
Q ss_conf 1999964689946789964529
Q 000615 894 VLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++||.|.-||||||..+.|+.
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.40 E-value=0.12 Score=24.25 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.40 E-value=0.12 Score=24.24 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=20.8
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
..+.|.||+|.||||+++.++...
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l 67 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELY 67 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 816888989998999999999997
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.32 E-value=0.11 Score=24.38 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.26 E-value=0.087 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.|+|.+|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.26 E-value=0.11 Score=24.32 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-+-|.||+|+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCHHHHHHHHHHH
T ss_conf 46876699888308999999874
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.25 E-value=0.11 Score=24.33 Aligned_cols=22 Identities=27% Similarity=0.299 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++-+.+.
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=89.23 E-value=0.11 Score=24.30 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
.+.++|.+|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.16 E-value=0.11 Score=24.42 Aligned_cols=22 Identities=27% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.++|.+|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.17 Score=23.21 Aligned_cols=23 Identities=39% Similarity=0.501 Sum_probs=12.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99998599996799999994393
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
..++-||||+||||+.++++..+
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 59888899875899999999984
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.86 E-value=0.13 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.83 E-value=0.14 Score=23.75 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=16.5
Q ss_pred EEEECCCCCCHHHHHHHHHCC
Q ss_conf 999859999679999999439
Q 000615 200 TLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+++|++.+|||||++.|...
T Consensus 12 i~viGHVd~GKSTL~~~Ll~~ 32 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLHD 32 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 999937898989999999998
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=88.72 E-value=0.19 Score=22.86 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=12.7
Q ss_pred CEEEEEECCCCCCHHHHHHHHC
Q ss_conf 8199996468994678996452
Q 000615 893 GVLTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~La 914 (1389)
..+++|.|..|.|||||...+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 4089997799788899999999
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.68 E-value=0.18 Score=22.96 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=12.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.++-||+|+||||+.+.++..+
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9888999875999999999821
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.66 E-value=0.13 Score=23.90 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.61 E-value=0.13 Score=23.84 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.60 E-value=0.13 Score=24.03 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.48 E-value=0.12 Score=24.08 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=38.1
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99720307999999999999999999988499879999568519999862718899169599993589853147899988
Q 000615 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1389)
Q Consensus 1025 p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~~~~~~~~~~yf~ 1104 (1389)
.+++++||.- ++...++..+...+.... ....+++++++.+ .+... +.+ --.++.+.++.. +++..+..
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~-~~~~~i~~~~~~~-~i~~~-----l~s-r~~~i~~~~~~~--~~i~~~l~ 170 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYS-NSTRFAFACNQSN-KIIEP-----LQS-QCAILRYSKLSD--EDVLKRLL 170 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTT-TTEEEEEEESCGG-GSCHH-----HHT-TSEEEECCCCCH--HHHHHHHH
T ss_pred EEEEEEECCC-CCCHHHHHHHHHHCCCCC-CCEEEEECCCCHH-HHHHH-----HHH-HHHHHHHCCCCH--HHHHHHHH
T ss_conf 5999982443-232157787752011233-3336653147430-21067-----887-777765313322--45678887
Q ss_pred H
Q ss_conf 2
Q 000615 1105 A 1105 (1389)
Q Consensus 1105 ~ 1105 (1389)
.
T Consensus 171 ~ 171 (224)
T d1sxjb2 171 Q 171 (224)
T ss_dssp H
T ss_pred H
T ss_conf 7
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=88.23 E-value=0.11 Score=24.30 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99985999967999999943939
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+|+||||.|||++...||.+..
T Consensus 46 ~lLvG~pGVGKTalv~~LA~ri~ 68 (195)
T d1jbka_ 46 PVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39983587544799999999998
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.14 Score=23.76 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++|+|.+|+|||||++.+...
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999998999999999649
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=88.09 E-value=0.19 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.2
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+|.--+|++|.-.+|||||++.|.|..
T Consensus 6 ~p~ini~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 6 QPEVNIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHSCC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 997089999724886999999997041
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.08 E-value=0.2 Score=22.75 Aligned_cols=25 Identities=28% Similarity=0.207 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999859999679999999439399
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
...|=|+-|+||||+++.|+..+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 9999888667899999999998656
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.07 E-value=0.16 Score=23.30 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|.+|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.07 E-value=0.16 Score=23.30 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=23.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC----CCCCCEEEEEEEECC
Q ss_conf 999964689946789964529----988963799999959
Q 000615 895 LTALMGVSGAGKTTLMDVLAG----RKTGGYIEGDIKISG 930 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag----~~~~g~~~G~i~i~g 930 (1389)
.+.++|.+|+|||||++-+.- .+|-|...-.+.+.+
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~~~~~~~~~~ 43 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGIHEYDFEIKN 43 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSSEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEEE
T ss_conf 9999989999989999988468988872414999996014
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=87.90 E-value=0.16 Score=23.38 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=87.83 E-value=0.1 Score=24.57 Aligned_cols=21 Identities=43% Similarity=0.871 Sum_probs=15.7
Q ss_pred EEECCCCCCHHHHHHHHHCCC
Q ss_conf 998599996799999994393
Q 000615 201 LLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 201 aIlGpsGSGKSTLL~~LaG~l 221 (1389)
+|+|+||.|||++...||.+.
T Consensus 47 llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 47 VLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp EEEECTTSCHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHH
T ss_conf 687999988999999999999
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.80 E-value=0.16 Score=23.31 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999498999999985
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=87.78 E-value=0.17 Score=23.24 Aligned_cols=19 Identities=32% Similarity=0.447 Sum_probs=9.4
Q ss_pred EEEECCCCCCHHHHHHHHC
Q ss_conf 9996468994678996452
Q 000615 896 TALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~La 914 (1389)
++++|.-++|||||++.|.
T Consensus 6 i~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 6 LIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999447999999999999
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.73 E-value=0.17 Score=23.09 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.++|.+|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.67 E-value=0.18 Score=23.05 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.52 E-value=0.18 Score=23.08 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=13.4
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99985999967999999943
Q 000615 200 TLLLGPPGAGKTTLMLALAG 219 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG 219 (1389)
+++||.+|+|||||++-+..
T Consensus 5 iv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHC
T ss_conf 99999999988999999967
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=87.48 E-value=0.19 Score=22.80 Aligned_cols=26 Identities=46% Similarity=0.721 Sum_probs=20.6
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
|+. .+.+||+|+|||-|.++||..++
T Consensus 68 ~~n-iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 68 KSN-ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCC-EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 753-24418998637899999986443
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.42 E-value=0.19 Score=22.92 Aligned_cols=24 Identities=38% Similarity=0.415 Sum_probs=20.2
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 781999964689946789964529
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
|---+|++|.-++|||||++.|..
T Consensus 2 ~~ini~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 2 PHVNVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 971999994789849999999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=87.40 E-value=0.14 Score=23.82 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.6
Q ss_pred EEEEEECCCCCCHHHHHHHHCCC
Q ss_conf 19999646899467899645299
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
-.+||+|-..+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
T ss_conf 34888899999889999999779
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.35 E-value=0.14 Score=23.79 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.24 E-value=0.16 Score=23.37 Aligned_cols=22 Identities=45% Similarity=0.706 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9998599996799999994393
Q 000615 200 TLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l 221 (1389)
.++.||||+||||+.++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9988999998899999999762
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.82 E-value=0.2 Score=22.71 Aligned_cols=22 Identities=23% Similarity=0.293 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.++++|.+|+|||||++-+.+.
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.72 E-value=0.19 Score=22.85 Aligned_cols=21 Identities=38% Similarity=0.525 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.67 E-value=0.11 Score=24.52 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
++.+.||.|.||||+++.++..
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~ 69 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKR 69 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8996789998999999999999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=86.52 E-value=0.19 Score=22.88 Aligned_cols=70 Identities=13% Similarity=0.165 Sum_probs=37.8
Q ss_pred CCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99720307999999999999999999988499879999568519999862718899169599993589853147899988
Q 000615 1025 PSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPLGHESHKLIEYFE 1104 (1389)
Q Consensus 1025 p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~~~~~~~~~~yf~ 1104 (1389)
.+++++||.- .+.......+.+.+..... ...++++++++. .+.... .. -...+.+-++.. .++..+..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~-~i~~~i-----~s-r~~~i~~~~~~~--~~i~~~l~ 168 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH-KLTPAL-----LS-QCTRFRFQPLPQ--EAIERRIA 168 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG-GSCHHH-----HT-TSEEEECCCCCH--HHHHHHHH
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH-HHHHHH-----HH-HHHHHCCCCCCC--CCCCCCCC
T ss_conf 1899996632-0002378999988631120-023201267087-759999-----98-875401235652--00011021
Q ss_pred H
Q ss_conf 2
Q 000615 1105 A 1105 (1389)
Q Consensus 1105 ~ 1105 (1389)
.
T Consensus 169 ~ 169 (227)
T d1sxjc2 169 N 169 (227)
T ss_dssp H
T ss_pred C
T ss_conf 2
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.41 E-value=0.19 Score=22.83 Aligned_cols=24 Identities=42% Similarity=0.598 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHCCCCC
Q ss_conf 999964689946789964529988
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRKT 918 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~~ 918 (1389)
++.|-|.=|||||||++-|.....
T Consensus 5 v~iitGFLGaGKTTll~~lL~~~~ 28 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNEQH 28 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCC
T ss_pred EEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 899864888999999999985678
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.22 E-value=0.22 Score=22.39 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 199996468994678996452998
Q 000615 894 VLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 894 ~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
..++|=|.-||||||+++.|+...
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 199998998885999999999987
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.19 E-value=0.22 Score=22.38 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHCCC
Q ss_conf 9999646899467899645299
Q 000615 895 LTALMGVSGAGKTTLMDVLAGR 916 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~ 916 (1389)
.+.++|.+|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.14 E-value=0.28 Score=21.71 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=21.6
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 884781999964689946789964529
Q 000615 889 VFRPGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 889 ~i~~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+-.|+..+|.|++|+|||||+..++.
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 636788777667999898999999999
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=85.99 E-value=0.21 Score=22.54 Aligned_cols=27 Identities=26% Similarity=0.131 Sum_probs=22.9
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+.+.++.+.||.|+|||++...|++..
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 976769998999988899999999985
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=85.72 E-value=0.22 Score=22.46 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=20.3
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 78199996468994678996452998
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
|+ -.-++||+|+|||-|.+.||...
T Consensus 68 ~~-niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 68 KS-NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CC-CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CC-CEEEECCCCCCHHHHHHHHHHHC
T ss_conf 75-32441899863789999998644
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=85.54 E-value=0.25 Score=22.12 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999985999967999999943939
Q 000615 199 MTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 199 ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
...|=|+-||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999989867789999999999817
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=85.48 E-value=0.27 Score=21.91 Aligned_cols=27 Identities=37% Similarity=0.463 Sum_probs=21.6
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
+|.-...++||+|+|||.|.+.|+...
T Consensus 51 kp~~~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 51 RPIGSFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 876699997888624899999999983
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=85.46 E-value=0.27 Score=21.82 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 39999859999679999999439
Q 000615 198 RMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 198 ~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+.+|.|+.||||||..+.|+.+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 89999799998899999999986
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.32 E-value=0.24 Score=22.23 Aligned_cols=59 Identities=15% Similarity=0.347 Sum_probs=30.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 334699887889989999999999963999720307999999999999999999988499879999568
Q 000615 997 SMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQ 1065 (1389)
Q Consensus 997 ~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hq 1065 (1389)
.++-.||.-.++++-..-+. +.+--+++. .+..|+-+.+...+..+.+ .+..+++.+..
T Consensus 99 nliDtPGh~dF~~ev~~al~-----~~D~allVV-da~eGv~~qT~~~~~~a~~----~~~p~i~viNK 157 (341)
T d1n0ua2 99 NLIDSPGHVDFSSEVTAALR-----VTDGALVVV-DTIEGVCVQTETVLRQALG----ERIKPVVVINK 157 (341)
T ss_dssp EEECCCCCCSSCHHHHHHHH-----TCSEEEEEE-ETTTBSCHHHHHHHHHHHH----TTCEEEEEEEC
T ss_pred EEECCCCCHHHHHHHHHHHH-----HCCCEEEEE-ECCCCCCHHHHHHHHHHHH----CCCCEEEEEEC
T ss_conf 99737873889999998875-----237249998-6566820469999999987----69986999877
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.21 E-value=0.43 Score=20.52 Aligned_cols=28 Identities=29% Similarity=0.386 Sum_probs=23.9
Q ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8838839999859999679999999439
Q 000615 193 IVKPSRMTLLLGPPGAGKTTLMLALAGK 220 (1389)
Q Consensus 193 ~i~pG~ltaIlGpsGSGKSTLL~~LaG~ 220 (1389)
.+-.|+-.+|.|++|+|||||+..++..
T Consensus 64 pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 64 PYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 6367887776679998989999999998
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.15 E-value=0.19 Score=22.91 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=9.0
Q ss_pred EEEECCCCCCHHHHHHHH
Q ss_conf 999646899467899645
Q 000615 896 TALMGVSGAGKTTLMDVL 913 (1389)
Q Consensus 896 ~al~G~sGaGKTTLl~~L 913 (1389)
++++|.-++|||||++.|
T Consensus 27 i~iiGHVD~GKSTL~~~L 44 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNI 44 (245)
T ss_dssp EEEEECGGGTHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHH
T ss_conf 999952798999999999
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.00 E-value=0.31 Score=21.49 Aligned_cols=20 Identities=25% Similarity=0.488 Sum_probs=11.2
Q ss_pred EEEEECCCCCCHHHHHHHHC
Q ss_conf 99996468994678996452
Q 000615 895 LTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~La 914 (1389)
.+.++|..|+|||||++-+.
T Consensus 4 KivllG~~~vGKTsl~~r~~ 23 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMK 23 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99999999988899999884
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.09 E-value=0.35 Score=21.12 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=12.9
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599996799999994
Q 000615 200 TLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~La 218 (1389)
.+++|+.++|||||...|.
T Consensus 9 i~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999478998999999999
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.89 E-value=0.29 Score=21.69 Aligned_cols=20 Identities=40% Similarity=0.669 Sum_probs=15.5
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38839999859999679999
Q 000615 195 KPSRMTLLLGPPGAGKTTLM 214 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL 214 (1389)
+.|..++..|.||.|||||-
T Consensus 12 ~~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 12 KEGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TTCCEEEEEECTTSCHHHHT
T ss_pred CCCCEEEEECCCCCCCCCCC
T ss_conf 99988999736879814221
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.79 E-value=0.43 Score=20.51 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.3
Q ss_pred ECCEEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 478199996468994678996452998
Q 000615 891 RPGVLTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
..+-.++++|...+|||||+|.|.|+.
T Consensus 110 ~~~~~v~vvG~PNvGKSsliN~L~~~~ 136 (273)
T d1puja_ 110 PRAIRALIIGIPNVGKSTLINRLAKKN 136 (273)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf 775278998667544355542542661
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=83.72 E-value=0.44 Score=20.48 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=20.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 88399998599996799999994393
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKL 221 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l 221 (1389)
.-....+.||+++|||+|+++|...+
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 61799998589887789999999983
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.72 E-value=0.29 Score=21.69 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 999859999679999999439399
Q 000615 200 TLLLGPPGAGKTTLMLALAGKLGK 223 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~LaG~l~~ 223 (1389)
..|=|+-||||||+++.|+..+..
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 999888778899999999998734
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=83.54 E-value=0.34 Score=21.25 Aligned_cols=34 Identities=35% Similarity=0.500 Sum_probs=25.7
Q ss_pred EEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0177883883999985999967999999943939
Q 000615 189 DVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 189 ~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.+-|.-.|.-..++.||||+|||.|.++||++..
T Consensus 115 ~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~ 148 (321)
T d1w44a_ 115 EFGGHRYASGMVIVTGKGNSGKTPLVHALGEALG 148 (321)
T ss_dssp EETTEEEESEEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 8861436886388877998508899999999863
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.47 E-value=0.32 Score=21.40 Aligned_cols=98 Identities=10% Similarity=0.173 Sum_probs=51.9
Q ss_pred HHCCCCCEEECCCCCC-CHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEE-EEECCCEEEEECCCCCCHHH-
Q ss_conf 6399972030799999-99999999999999884998799995685199998627188-99169599993589853147-
Q 000615 1022 VANPSIIFMDEPTSGL-DARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL-LLKRGGRVIYAGPLGHESHK- 1098 (1389)
Q Consensus 1022 ~~~p~illLDEPTsGL-D~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~il-ll~~gG~~~~~G~~~~~~~~- 1098 (1389)
..+.+++++|+--.=. +...+..+..++....+.|+.+|+++..+..++-..-+++. -+ ..|.++.-.|..+...+
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL-~~g~~~~i~p~d~~~~~i 173 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRF-EGGILVEIELDNKTRFKI 173 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHH-HTSEEEECCCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHH-HCCEEEEECCCCHHHHHH
T ss_conf 7621301011265505865778899999998763166389954875100134326788886-185689978882799999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHE
Q ss_conf 89998828998664334694531110
Q 000615 1099 LIEYFEAVPGVPKIKEAYNPATWMLE 1124 (1389)
Q Consensus 1099 ~~~yf~~~~g~~~~~~~~npa~~~l~ 1124 (1389)
+..+++.. |. .+++ +.++|+++
T Consensus 174 L~~~a~~r-gl-~l~~--~v~~yl~~ 195 (213)
T d1l8qa2 174 IKEKLKEF-NL-ELRK--EVIDYLLE 195 (213)
T ss_dssp HHHHHHHT-TC-CCCH--HHHHHHHH
T ss_pred HHHHHHHC-CC-CCCH--HHHHHHHH
T ss_conf 99999982-99-9999--99999998
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.42 E-value=0.33 Score=21.29 Aligned_cols=20 Identities=35% Similarity=0.634 Sum_probs=16.7
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38839999859999679999
Q 000615 195 KPSRMTLLLGPPGAGKTTLM 214 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL 214 (1389)
+.|...+..|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.23 E-value=0.44 Score=20.47 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=20.8
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 883999985999967999999943939
Q 000615 196 PSRMTLLLGPPGAGKTTLMLALAGKLG 222 (1389)
Q Consensus 196 pG~ltaIlGpsGSGKSTLL~~LaG~l~ 222 (1389)
.|++++++||-.|||||-|--.+.++.
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~~~~ 27 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVRRFQ 27 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 947999991416789999999999999
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.37 E-value=0.42 Score=20.62 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHCC
Q ss_conf 999964689946789964529
Q 000615 895 LTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag 915 (1389)
.+.++|.+|+|||||+.-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.23 E-value=0.28 Score=21.72 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9998599996799999994
Q 000615 200 TLLLGPPGAGKTTLMLALA 218 (1389)
Q Consensus 200 taIlGpsGSGKSTLL~~La 218 (1389)
.+|+|+.++|||||+.+|.
T Consensus 20 I~iiGhvd~GKTTL~d~Ll 38 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLV 38 (341)
T ss_dssp EEEECCGGGTHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHH
T ss_conf 9999688886999999999
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.83 E-value=0.47 Score=20.28 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=20.5
Q ss_pred CCEEEEEECCCCCCHHHHHHHHCC
Q ss_conf 781999964689946789964529
Q 000615 892 PGVLTALMGVSGAGKTTLMDVLAG 915 (1389)
Q Consensus 892 ~G~~~al~G~sGaGKTTLl~~Lag 915 (1389)
|.--+|++|.-++|||||++.|.+
T Consensus 2 p~ini~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 2 PHVNVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 971899995889809999999999
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=81.57 E-value=0.26 Score=21.97 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=19.4
Q ss_pred EECCEEEEEECCCCCCHHH-HH-HHH
Q ss_conf 8388399998599996799-99-999
Q 000615 194 VKPSRMTLLLGPPGAGKTT-LM-LAL 217 (1389)
Q Consensus 194 i~pG~ltaIlGpsGSGKST-LL-~~L 217 (1389)
+++|+.++|.+|.|||||+ .+ .++
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~ 31 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIV 31 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHH
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 64699499997999978799999999
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=80.59 E-value=0.49 Score=20.16 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=16.7
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 38839999859999679999
Q 000615 195 KPSRMTLLLGPPGAGKTTLM 214 (1389)
Q Consensus 195 ~pG~ltaIlGpsGSGKSTLL 214 (1389)
+.|..++..|-||.|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=80.41 E-value=0.48 Score=20.23 Aligned_cols=23 Identities=43% Similarity=0.501 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 99996468994678996452998
Q 000615 895 LTALMGVSGAGKTTLMDVLAGRK 917 (1389)
Q Consensus 895 ~~al~G~sGaGKTTLl~~Lag~~ 917 (1389)
-..|+|++|.|||++..-|+.+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEECCCCCCHHHHHHHHHHHH
T ss_conf 96798889886779999999999
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=80.23 E-value=0.47 Score=20.27 Aligned_cols=20 Identities=45% Similarity=0.747 Sum_probs=16.8
Q ss_pred ECCEEEEEECCCCCCHHHHH
Q ss_conf 47819999646899467899
Q 000615 891 RPGVLTALMGVSGAGKTTLM 910 (1389)
Q Consensus 891 ~~G~~~al~G~sGaGKTTLl 910 (1389)
+.|+...+.|-||.|||||=
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
|